Éditeur(s) : HAL CCSD Springer Verlag (Germany) Springer Verlag
Résumé : Direct numerical simulations of flow through two millimeter-scale rock samples of limestone and sandstone are performed using three diverse fluid dynamic simulators. The resulting steady-state velocity fields are compared in terms of the associated empirical probability density functions (PDFs) and key statistics of the velocity fields. The pore space geometry of each sample is imaged at 5.06−μm voxel size resolution using X-ray microtomography. The samples offer contrasting characteristics in terms of total connected porosity (about 0.31 for the limestone and 0.07 for the sandstone) and are typical of several applications in hydrogeology and petroleum engineering. The three-dimensional fluid velocity fields within the explicit pore spaces are simulated using ANSYS® FLUENT® ANSYS Inc. (2009), EULAG Prusa et al. (Comput. Fluids 37, 1193–1207 2008), and SSTOKES Sarkar et al. (2002). These computational approaches are highly disperse in terms of algorithmic complexity, differ in terms of their governing equations, the adopted numerical methodologies, the enforcement of internal no-slip boundary conditions at the fluid-solid interface, and the computational mesh structure. As metrics of comparison to probe in a statistical sense the internal similarities/differences across sample populations of velocities obtained through the computational systems, we consider (i) integral quantities, such as the Darcy flux and (ii) main statistical moments of local velocity distributions including local correlations between velocity fields. Comparison of simulation results indicates that mutually consistent estimates of the state of flow are obtained in the analyzed samples of natural pore spaces despite the considerable differences associated with the three computational approaches. We note that in the higher porosity limestone sample, the structures of the velocity fields obtained using ANSYS FLUENT and EULAG are more alike than either compared against the results obtained using SSTOKES. In the low-porosity sample, the structures of the velocity fields obtained by EULAG and SSTOKES are more similar than either is to the fields obtained using ANSYS FLUENT. With respect to macroscopic quantities, ANSYS FLUENT and SSTOKES provide similar results in terms of the average vertical velocity for both of the complex microscale geometries considered, while EULAG tends to render the largest velocity values. The influence of the pore space structure on fluid velocity field characteristics is also discussed.
ISSN: 1420-0597

hal-01174152
https://hal.archives-ouvertes.fr/hal-01174152
DOI : 10.1007/s10596-015-9486-7

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : International audience
We studied the monogenean communities of 34 species of butterflyfish from the tropical Indo-West Pacific, identifying 13 dactylogyrid species (including two species that are presently undescribed). Monogenean assemblages differed significantly between host species in terms of taxonomic structure, intensity and prevalence. Parasite richness ranged from 0 (Chaetodon lunulatus) to 11 (C. auriga, C. citrinellus and C. lunula). Host specificity varied between the dactylogyrids species, being found on 2-29 of the 34 chaetodontid species examined. Sympatric butterflyfish species were typically parasitized by different combinations of dactylogyrid species, suggesting the existence of complex host-parasite interactions. We identified six clusters of butterflyfish species based on the similarities of their dactylogyrid communities. Dactylogyrid richness and diversity were not related to host size, diet specialization, depth range or phylogeny of butterflyfish species. However, there was a weak positive correlation between monogenean richness and diversity and host geographical range. Most communities of dactylogyrids were dominated by Haliotrema aurigae and H. angelopterum, indicating the importance of the genus Haliotrema in shaping monogenean communities of butterflyfishes. This study casts light on the structure of the monogenean communities of butterflyfishes, suggesting that the diversity and complexity of community structures arises from a combination of host species-specific parameters.
ISSN: 0031-1820

hal-01380679
https://hal-univ-perp.archives-ouvertes.fr/hal-01380679
DOI : 10.1017/S0031182016001463

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé :  
We explored the relationship between soil processes, estimated through soil respiration (Rsoil), and the spatial variation in forest structure, assessed through the distribution of tree size, in order to understand the determinism of spatial variations in Rsoil in a tropical forest. The influence of tree size was examined using an index (Ic) calculated for each tree as a function of (1) the trunk cross section area and (2) the distance from the measurement point. We investigated the relationships between Ic and litterfall, root mass and Rsoil, respectively. Strong significant relationships were found between Ic and both litterfall and root mass. Rsoil showed a large range of variations over the 1-ha experimental plot, from 1.5 to 12.6 gC m−2 d−1. The best relationship between Ic and Rsoil only explained 17% of the spatial variation in Rsoil. These results support the assumption that local spatial patterns in litter production and root mass depend on tree distribution in tropical forests. Our study also emphasizes the modest contribution of tree size distribution-which is mainly influenced by the presence of the biggest trees (among the large range size of the inventoried trees greater than 10 cm diameter at 1.30 m above ground level or at 0.5 m above the buttresses)-in explaining spatial variations in Rsoil.
Plant and Soil

hal-01032200
https://hal.archives-ouvertes.fr/hal-01032200
DOI : 10.1007/s11104-011-0848-1

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
We report structural evidence of ductile strain localization in mantle pyroxenite from the spinel to plagioclase websterite transition in the Ronda Peridotite (southern Spain). Mapping shows that, in this domain, small-scale shear zones occurring at the base of the lithospheric section are systematically located within thin pyroxenite layers, suggesting that the pyroxenite was locally weaker than the host peridotite. Strain localization is associated with a sudden decrease of grain size and increasing volume fractions of plagioclase and amphibole as a result of a spinel to plagioclase phase transformation reaction during decompression. This reaction also fostered hydrogen extraction ('dehydroxylation') from clinopyroxene producing effective fluid saturation that catalyzed the synkinematic net-transfer reaction. This reaction produced fine-grained olivine and plagioclase, allowing the onset of grain-size sensitive creep and further strain localization in these pyroxenite bands. The strain localization in the pyroxenites is thus explained by their more fertile composition, which allowed earlier onset of the phase transition reactions. Geothermobarometry undertaken on compositionally zoned constituent minerals suggests that this positive feedback between reactions and deformation is associated with cooling from at least 1000°C to 700°C and decompression from 1*0 to 0*5 GPa.
ISSN: 0022-3530

hal-00941293
https://hal.archives-ouvertes.fr/hal-00941293
DOI : 10.1093/petrology/egt039

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Ro 31-8220 is a potent protein kinase C (PKC) inhibitor belonging to the chemical class of bisindolylmaleimides (BIMs). Various PKC-independent effects of Ro 31-8220 have however been demonstrated, including inhibition of the ATP-binding cassette drug transporter breast cancer resistance protein. In the present study, we reported that the BIM also blocks activity of the solute carrier organic cation transporter (OCT) 1, involved in uptake of marketed drugs in the liver, in a PKC-independent manner. Ro 31-8220, in contrast to other pan-PKC inhibitors such as staurosporine and chelerythrine, was thus shown to cis-inhibit uptake of the reference OCT1 substrate tetraethylammonium in OCT1-transfected HEK293 cells in a concentration-dependent manner (IC50 = 0.18 μM) and without altering membrane expression of OCT1. This blockage of OCT1 was also observed in human hepatic HepaRG cells that constitutionally express OCT1. It likely occurred through a mixed mechanism of inhibition. Ro 31-8220 additionally trans-inhibited TEA uptake in OCT1-transfected HEK293 cells, which likely discards a transport of Ro 31-8220 by OCT1. Besides Ro 31-8220, 7 additional BIMs, including the PKC inhibitor LY 333531, inhibited OCT1 activity, whereas 4 other BIMs were without effect. In silico analysis of structure-activity relationships next revealed that various molecular descriptors, especially 3D-WHIM descriptors related to total size, correspond to key physico-chemical parameters for inhibition of OCT1 activity by BIMs. In addition to activity of OCT1, Ro 31-8220 inhibited those of other organic cation transporters such as multidrug and toxin extrusion protein (MATE) 1 and MATE2-K, whereas, by contrast, it stimulated that of OCT2. Taken together, these data extend the nature of cellular off-targets of the BIM Ro 31-8220 to OCT1 and other organic cation transporters, which has likely to be kept in mind when using Ro 31-8220 and other BIMs as PKC inhibitors in experimental or clinical studies
ISSN: 1932-6203

hal-01255837
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01255837
DOI : 10.1371/journal.pone.0144667
PUBMED : 26657401
PUBMEDCENTRAL : PMC4675551

Éditeur(s) : HAL CCSD
Résumé : International audience
Mylonite bodies are exhumed extensions at depth of shallow structural level brittle faults. They are characterised by intense strain localisation involving large volumes of middle to lower continental crust. The analysis of shear zone geometry and microstructures is a useful tool to decipher deformation kinematics, though finite strain estimation is still relatively qualitative. Timing of the deformation has also been the focus of numerous studies using the complete spectrum of geochronometers. However, only rare examples provide geochronological data that can be unambiguously interpreted and cooling, recrystallisation and neocrystallisation are difficult to tell from each other. Thus, time-scales over which major mylonite zones develop and remain active under ductile conditions as well as their strain rate often remain poorly documented. We investigated two sections across the South-Armorican Shear Zone (SASZ), a crustal-scale pluri-km thick dextral shear zone active during a single tectonic event of late-Variscan age and associated with syntectonic granite emplacement.. Finite strain profiles on these cross-sections, quantified from average Quartz grain-size in 34 samples, show a strong deformation partitioning towards the center of the SASZ, with a decrease, for each section, from 150µm in slightly deformed zones to less than 7-5 µm in the core of the ultramylonite. Furthermore, toward the core of the SASZ, development of a penetrative shear band network progressively eliminates lenses of less deformed rocks and results in homogenisation of the Quartz grain sizes. In parallel, we performed in-situ UV-laser Ar/Ar dating on the fabric-forming white micas. White micas population can be decomposed into inherited muscovites carried by the folation and newly-formed, syn-tectonic substituted phengites located along the shear bands yielding 2 age groups for each sample. Along the profiles, the difference between these two ages evolves from 10-15 Ma in weakly deformed domains to zero toward the SASZ core. In addition, mylonite-forming phengites yielded the same age irrespectively of their position on the section or of the rock strain.. On the regional point of view, this study brings deformation-ages for the late-orogenic evolution of the South Armorican domain. Strain accumulated along the SASZ in a time-span extending to 300-298 Ma, i.e. contemporaneously with the activity of nearby major extensional shear zones. These results support a new model of crustal-scale shear zone activity, where the whole body of the shear zone is active throughout its history (defined as the largest age difference through the section), i.e. the actively deforming zone does not get progressively narrower. The strain distribution nevertheless evolves with time, with an increasingly large fraction partitioned in the ultramylonitic core.
EGU General Assembly
Vienne, Austria

insu-00839320
https://hal-insu.archives-ouvertes.fr/insu-00839320
BIBCODE : 2010EGUGA..12.9881A

Éditeur(s) : HAL CCSD
Résumé :   Diplôme : DEA
il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : DISSERTATION
Tropical rainforests are complex ecosystems, rarely investigated from ground-level. The canopy, highest part of the cover, can on the other hand be studied by several remote sensing tools. The aim of this study is to assess in what way the canopy is related to the forest structure below and the forest dynamic. We looked for correlation between the canopy texture (crown size) observed from aerial photographs and various parameters of the forest (spatial and demographic structure, forest dynamic, floristic structure). We worked on the Paracou experimental device, in French Guiana, at two different scales. 1- At a local scale (6.5 ha ; scale of the photographs 1: 4 000), we demarcated six sub-plots with big crowns in the canopy and six with small crowns. 2- At a forest scale (approximately one hundred ha ; scale of the photograph 1: 25 000), we compared 2 forest plots: one with a rough canopy texture and one with a smooth canopy texture. We found that the size of the crowns in the canopy do not express the same characteristics of the fore according to the scale of study : at the local scale, difference in crown size means a difference in basal area but not in density, while at the forest scale it is the opposite. Several hypotheses related to the sylvigenetic cycle, the floristic structure or the nature of the substratum are suggested to explain these results.
Les forêts tropicales humides (FTH) sont des écosystèmes complexes difficiles à étudier depuis le sol. Leur canopée, partie supérieure du couvert, est en revanche abordable par divers outils de télédétection. Cette étude vise à déterminer en quoi la structure de la canopée est le reflet de la structure forestière sous-jacente et de la dynamique spatio-temporelle qui s'y exerce. Nous avons donc recherché des corrélations, entre la texture de canopée (taille des couronnes) vue sur des photographies aériennes, et différents paramètres de la forêt sous-jacente (structure spatiale et démographique, dynamique forestière, structure floristique). Ce travail a été abordé sur le dispositif expérimental forestier de Paracou, en Guyane Française, à 2 échelles différentes. 1- A l'échelle de la parcelle (6,5 ha ; photographies au 1: 4 000), nous avons délimité des placettes à grosses couronnes en canopée et des placettes à petites couronnes. 2- A l'échelle du massif forestier (une centaine d'ha ; photographies IGN au 1: 25 000) nous comparons une parcelle de texture de canopée, grossière et une parcelle de texture fine. Le résultat principal de notre étude est que la taille des couronnes en canopée ne reflète pas les mêmes caractéristiques du couvert selon l'échelle de l’étude : à l'échelle de la parcelle, des différences de taille de couronnes traduisent des différences de surface terrière mais pas de densité, tandis qu'à l'échelle du massif forestier c'est l'inverse. Plusieurs hypothèses, invoquant des différences dans le stade sylvigénétique, la composition floristique ou la nature du substrat des placettes ou parcelles comparées, sont proposées pour expliquer ces résultats.
https://hal.archives-ouvertes.fr/hal-01189180

hal-01189180
https://hal.archives-ouvertes.fr/hal-01189180
PRODINRA : 12184

Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
This work investigates the structural formation and analyses of titania membranes (TM) prepared using different vacuum exposure times for molecular weight (MW) cut-off performance and oil/water separation. Titania membranes were synthesized via a sol-gel method and coated on macroporous alumina tubes followed by exposure to a vacuum between 30 and 1200 s and then calcined at 400 °C. X-ray diffraction and nitrogen adsorption analyses showed that the crystallite size and particle size of titania increased as a function of vacuum time. All the TM membranes were mesoporous with an average pore diameter of ~3.6 nm with an anatase crystal morphology. Water, glucose, sucrose, and polyvinylpyrrolidone with 40 and 360 kDa (PVP-40 kDa and PVP-360 kDa) were used as feed solutions for MW cut-off and hexadecane solution for oil filtration investigation. The TM membranes were not able to separate glucose and sucrose, thus indicating the membrane pore sizes are larger than the kinetic diameter of sucrose of 0.9 nm, irrespective of vacuum exposure time. They also showed only moderate rejection (20%) of the smaller PVP-40 kDa, however, all the membranes were able to obtain an excellent rejection of near 100% for the larger PVP-360 kDa molecule. Furthermore, the TM membranes were tested for the separation of oil emulsions with a high concentration of oil (3000 ppm), reaching high oil rejections of more than 90% of oil. In general, the water fluxes increased with the vacuum exposure time indicating a pore structural tailoring effect. It is therefore proposed that a mechanism of pore size tailoring was formed by an interconnected network of Ti-O-Ti nanoparticles with inter-particle voids, which increased as TiO2 nanoparticle size increased as a function of vacuum exposure time, and thus reduced the water transport resistance through the TM membranes. © 2016 by the authors.
ISSN: 1996-1944

hal-01683214
https://hal.univ-antilles.fr/hal-01683214
DOI : 10.3390/ma9110938

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
We assessed the occurrence of algae in five species of tank-bromeliads found in contrasting environmental sites in a Neotropical, primary rainforest around the Nouragues Research Station, French Guiana. The distributions of both algal abundance and biomass were examined based on physical parameters, the morphological characteristics of bromeliad species and with regard to the structure of other aquatic microbial communities held in the tanks. Algae were retrieved in all of the bromeliad species with mean densities ranging from ∼10(2) to 10(4) cells/mL. Their biomass was positively correlated to light exposure and bacterial biomass. Algae represented a tiny component of the detrital food web in shaded bromeliads but accounted for up to 30 percent of the living microbial carbon in the tanks of Catopsis berteroniana, located in a highly exposed area. Thus, while nutrient supplies are believed to originate from wind-borne particles and trapped insects (i.e., allochtonous organic matter), our results indicate that primary producers (i.e., autochtonous organic matter) are present in this insectivorous bromeliad. Using a 24-h incubation of size-fractionated and manipulated samples from this plant, we evaluated the impact of mosquito foraging on algae, other microorganisms and rotifers. The prey assemblages were greatly altered by the predation of mosquito larvae. Grazing losses indicated that the dominant algal taxon, Bumilleriopsis sp., like protozoa and rotifers, is a significant part of the diet of mosquito larvae. We conclude that algae are a relevant functional community of the aquatic food web in C. berteroniana and might form the basis of a complementary non-detrital food web.
ISSN: 1932-6203

hal-00819161
https://hal.archives-ouvertes.fr/hal-00819161
https://hal.archives-ouvertes.fr/hal-00819161/document
https://hal.archives-ouvertes.fr/hal-00819161/file/Brouard2011_AreAlgae.pdf
DOI : 10.1371/journal.pone.0020129

Résumé : Pour beaucoup de cultures, un sol non travaillé est une alternative de plus en plus crédible au travail intensif du sol, en particulier pour des raisons environnementales. Mais l’ananas (ananas comosus) présente un enracinement fragile très sensible à la structure, ce qui motive souvent un travail important du sol avant plantation. L’alternative d’une plantation sans travail du sol ne va donc pas de soi. L’objet de cette thèse est de répondre à la question de la faisabilité d’une culture d’ananas sans travail du sol, en remplaçant ce dernier par une plante de service « décompactante » dont les traits racinaires seraient favorables à la (re)structuration d’un sol compact. Le travail de cette thèse a donc porté sur l’évaluation de plusieurs espèces candidates, puis sur l’étude, au champ, des effets sur le sol de la plus prometteuse (Stylosanthes guianensis ). Enfin, dans le cadre d’un essai au champ comparant un système de culture innovant ananas sans travail du sol, on a étudié l’effet de la plante de service sur le fonctionnement de la culture de l’ananas. Dans un premier essai, c’est le Stylosanthes guianensis qui, comparé à huit autres espèces (Arachis pintoï, Brachiaria decumbens, Cajanus cajan, Crotalaria juncea, Cynodon dactylon, Eleusine coracana, Pueraria phaseoloides, et le maïs), a montré les traits racinaires les plus favorables à la structuration d’un sol compact. Les valeurs supérieures du diamètre racinaire moyen et de la densité de longueur racinaire (DRL) caractérisent les principaux traits impliqués. Dans un deuxième essai, les mesures de conductivité hydraulique, d’indice des vides du sol et d’analyse d’images de blocs de sol imprégné sur la répartition surfacique des différents types de porosité ont montré que la culture du Stylosanthes guianensis avait augmenté l’indice des vides du sol et provoqué l’apparition d’une porosité fissurale de grande taille, contribuant ainsi à l’amélioration de la structure du sol. Enfin, un troisième essai mettant en comparaison (i) un système de culture innovant où la culture d’ananas est implantée sans travail du sol après une culture de S. guianensis restructurante et (ii) un système conventionnel comportant un travail profond du sol (et pas de plante de service) a montré que le rendement en fruit est similaire dans les deux systèmes. Cet essai a permis de vérifier que l’enracinement de l’ananas en condition de sol non travaillé bénéficiait du précédent S. guianensis.
For many crops, direct drilling is a well-tried alternative facing the damaging effects of intensive tillage, mainly for environmental causes. But, pineapple (ananas comosus), presents a fragile rooting system which is very sensitive to soil structure. This leads frequently to intensive soil tillage before planting. Direct drilling is not so evident. The aim of this thesis is to give an answer to the feasibility of a no till system for pineapple cultivation, by using a plant with favorable roots traits for compacted soil (re)structuration. This work consisted in evaluating several candidate species, followed by the study, on the field, of the effects the most promising on soil (Stylosanthes guianensis). Finally, through a field experiment, comparing an innovating no till pineapple cultivation system we studied the use effects of Stylosanthes guianensis on the pineapple crop functioning. In a first experiment, Stylosanthes guianensis compared with eight other species (Arachis pintoï, Brachiaria decumbens, Cajanus cajan, Crotalaria juncea, Cynodon dactylon, Eleusine coracana, Pueraria phaseoloides and corn) showed better roots traits for structuring a compacted soil. Measures of average root diameter and root length density are the main implicated roots traits. In a second experiment, the measures of hydraulic conductivity, of the soil void ratio and the analysis of blocks of resin-impregnated soil on the surface distribution of the different type of porosity, all of this showed that Stylosanthes guianensis had increased the soil void ratio and had caused the creation of large-sized cracked porosity, thus contributing to the improvement of the soil structure. Finally, a third experiment involving a comparison between (i) an innovating cultivation system where pineapple is growing in a no till soil after a structuring crop of S. guianensis and (ii) a conventional system with deep tillage (without structuring crop), showed similar fruit yield. This experiment showed evidence that the rooting of pineapple in no till soil benefited from the previous Stylosanthes.

http://www.theses.fr/2014AGUY0725/document

Éditeur(s) : EDP Sciences
Résumé : Twelve diel surveys were carried out in three reservoirs of Sri Lanka viz. Minneriya, Udawalawe and Victoria, to investigate diel feeding patterns, daily ration and relative food consumption in fish populations. Stomach content weights of different size classes of various fish species in the three reservoirs in 12 diel surveys were analysed using an iterative method, MAXIMS. Predominantly herbivorous or detritivorous fish species such as Amblypharyngodon melettinus and Oreochromis niloticus exhibited one peak in the diel feeding pattern. Two peak feeding periods were evident in predominantly insectivores and/or zooplanktivores (e. g., Puntius chola and Rasbora daniconius) and interestingly in macrophyte feeders (i.e., Etroplus suratensis, Puntius filamentosus and Tilapia rendalli). It might be possible that all species with two feeding peaks in diel feeding patterns rely on vision for feeding. Food consumption per biomass (Q/B ratio) defined as amount of food consumed per unit weight of an age-structured population of fish was estimated on the basis of the average quantities of food consumed over a long period of time by various size classes in order to minimize the bias of estimates.
Douze séries d'échantillonnage ont été effectuées dans trois lacs-réservoirs du Sri Lanka : Minneriya, Udawalawe et Victoria, afin d'étudier le modèle journalier d'alimentation, les rations journalières et à la consommation relative des populations de poissons. Les poids des contenus stomacaux de différentes classes de taille ont ainsi été analysés en utilisant une méthode itérative, MAXIMS. Les espèces herbivores ou détritivores telles que Amblypharyngodon melettinus et Oreochromis niloticus montrent un pic dans l'activité de nutrition. Tandis que les espèces détrivores et/ou zooplanctivores en présentent deux (ex., Puntius chola et Rasbora daniconius) de même que des espèces se nourrissant de macrophytes (ex., Etroplus suratensis, Puntius filamentosus et Tilapia rendalli). Il est possible que la vision joue un rôle chez ces espèces présentant deux pics journaliers d'alimentation. La consommation de nourriture par rapport à la biomasse (le rapport Q/B) est défini comme la quantité d'aliment consommé par unité de poids d'une population de poissons structurée en âge, sur la base de quantités moyennes de nourriture consommée sur une longue période de temps et par diverses classes de taille, afin de minimiser les biais dans les estimations.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2006-07 , Vol. 19 , N. 3 , P. 229-237

Droits : 2006 EDP
http://archimer.ifremer.fr/doc/2006/publication-2134.pdf
DOI:10.1051/alr:2006023
http://archimer.ifremer.fr/doc/00000/2134/

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Pituitary adenomas are currently classified by histological, immunocytochemical and numerous ultrastructural characteristics lacking unequivocal prognostic correlations. We investigated the prognostic value of a new clinicopathological classification with grades based on invasion and proliferation. This retrospective multicentric case-control study comprised 410 patients who had surgery for a pituitary tumour with long-term follow-up. Using pituitary magnetic resonance imaging for diagnosis of cavernous or sphenoid sinus invasion, immunocytochemistry, markers of the cell cycle (Ki-67, mitoses) and p53, tumours were classified according to size (micro, macro and giant), type (PRL, GH, FSH/LH, ACTH and TSH) and grade (grade 1a: non-invasive, 1b: non-invasive and proliferative, 2a: invasive, 2b: invasive and proliferative, and 3: metastatic). The association between patient status at 8-year follow-up and age, sex, and classification was evaluated by two multivariate analyses assessing disease- or recurrence/progression-free status. At 8 years after surgery, 195 patients were disease-free (controls) and 215 patients were not (cases). In 125 of the cases the tumours had recurred or progressed. Analyses of disease-free and recurrence/progression-free status revealed the significant prognostic value (p < 0.001; p < 0.05) of age, tumour type, and grade across all tumour types and for each tumour type. Invasive and proliferative tumours (grade 2b) had a poor prognosis with an increased probability of tumour persistence or progression of 25- or 12-fold, respectively, as compared to non-invasive tumours (grade 1a). This new, easy to use clinicopathological classification of pituitary endocrine tumours has demonstrated its prognostic worth by strongly predicting the probability of post-operative complete remission or tumour progression and so could help clinicians choose the best post-operative therapy.
ISSN: 0001-6322

hal-00875723
https://hal.archives-ouvertes.fr/hal-00875723
DOI : 10.1007/s00401-013-1084-y
PUBMED : 23400299

Éditeur(s) : Springer
Résumé : The structure and summertime production of planktonic communities and the role of nondiatom planktonic cells were studied in coastal ponds, which are areas traditionally used for fattening and greening table-sized oysters. The abundance and biomass of nano-microplanktonic protists were determined at weekly intervals between February 1998 and February 1999 in a coastal pond without oysters in the French Atlantic coast near La Rochelle. The production of these microbiotas was determined in the summer period. The structure of plankton communities revealed the following observations: (1) microphytoplanktonic cells were mostly diatoms and dinoflagellates, (2) microzooplanktonic cells were mainly ciliates, and (3) nanoplanktonic cells were represented by pigmented (80-90% of the nanoplankton biomass) and colorless nanoflagellates. Diatoms were dominated by Naviculiineae. Dinoflagellates were dominated by Peridiniales. Oligotrichida were predominant in the ciliate community. Protist biomass levels were nine times higher from April to August (summer period 1033 mu g C L-1) than from September to March (winter period 114 mu g C L-1). Whatever the season, nanoflagellates were dominant in the water column (66 and 53% of the entire protist biomass in the summer and winter periods, respectively). Nanoflagellates represented the highest production of nano-microplanktonic communities (76% of carbon protist production) in the coastal pond in summer and showed the shortest generation time (7.1 h). Dinoflagellates came after nanoflagellates in production (19.5% of carbon protist production). Diatoms represented only a supplementary carbon resource available for higher trophic levels, whereas, until now, they were considered as the principal food of oysters in coastal ponds. Ciliates were a small source of carbon, but their growth rate was high. We suggest, first, that nanoflagellates represented the primary resource available in the pond and could constitute an important food resource for higher trophic levels, such as oysters, farmed in this type of pond. Overall, the system appeared to be more autotrophic than heterotrophic. Because inorganic nutrients are quickly exhausted in a semiclosed pond, pigmented flagellates dominated the carbon biomass, production and biomass of bacteria were high (thus, the microbial food web appeared to be active in this pond), and mixotrophy seemed to be an important trophic mode there.
Microbial Ecology (0095-3628) (Springer), 2007-05 , Vol. 53 , N. 4 , P. 537-548

Droits : 2007 Springer
http://archimer.ifremer.fr/doc/2007/publication-2641.pdf
DOI:10.1007/s00248-006-9087-z
http://archimer.ifremer.fr/doc/00000/2641/

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
[1] The Pyrenees, north of the North Pyrenean fault, display a complex structure involving a succession of peridotite massifs, basement massifs, and mid-Cretaceous to Late Cretaceous basins located in a narrow domain, which was affected by a mid-Cretaceous, preorogenic, high-temperature, low-pressure metamorphism. The Late Cretaceous basins were interpreted either as pull-apart basins formed during transcurrent motion of Iberia relative to Eurasia or as remnants of a larger extensional basin. Recent models support that peridotite massifs result from the exhumation of the mantle during this preorogenic event. The northern boundary of the Agly basement massif shows evidence of ductile deformation of the basal formations of the Agly sedimentary cover. Macroscopic and microscopic kinematics indicators consistent with asymmetry of crystallographic fabrics suggest normal sense of shear and thus suggest detachment, at least partial, of the Mesozoic cover from its basement. Triassic to Early Cretaceous limestones are mylonitic and consistently shows a foliation, a NS- to NE-trending lineation, shear criteria suggesting top-to-the-north shearing and locally boudinage. At the microscopic scale, mylonites are characterized by a very fine grain size, frequently <10 µm. They contain larger, partially recrystallized calcite parent grains and undeformed quartz grains with calcite fringes crystallized in pressure shadows. In these mylonites, calcite systematically shows a weak but well-defined crystallographic-preferred orientations, suggesting HT dislocation creep combined to diffusion creep and possibly grain boundary sliding in the finest fraction of the mylonites. Paleotemperatures determined using Raman spectrometry suggest synkinematic temperature conditions in the range 340-390°C, in good agreement with observed microstructures and calcite CPO. The mylonitic fabric in Mesozoic limestones is folded by EW-trending Pyrenean folds north of the Agly basement massif, attesting that this fabric formed before the Pyrenean orogeny. These data consistently support preorogenic extension under medium-temperature conditions of the northern Agly massif and likely of the massif itself. Since simultaneously (~100 Ma) a mid-Cretaceous basin opened south of the basement massif, we suggest a model of preorogenic exhumation of the Agly massif in response to the regional extension associated to the rotation of Iberia. This model may explain the exhumation of the North Pyrenean massifs during a single preorogenic event that allowed the opening of extensional basins and the exhumation of the lithospheric mantle. All these structures being subsequently reworked during the Pyrenean orogeny.
ISSN: 0278-7407

hal-00852833
https://hal.archives-ouvertes.fr/hal-00852833
DOI : 10.1002/tect.20015

Éditeur(s) : Université de la Méditerranée
Résumé : This study was supported by the Atlantic working site of the « Programme National d’Océanographie Côtière » (PNOC, PNEC since 1999). The objectives were (1) to check the existence and to understand the mechanisms of winter phytoplankton blooms in the bay of Biscay influenced by the Gironde waters (2) to determine the limiting nutrient of the primary production associated to these blooms and to follow the seasonal evolution of the limiting nutrient, (3) to understand the consequences of this early limitation on the structuration of algal populations in spring. Since phosphorus was supposed to be the major limiting nutrient of algal growth in the Gironde plume, the different forms of the phosphorus cycle as well as the bacterial compartment, central in this cycle, were also studied in term of stocks and fluxes. The sampling strategy consisted in three cruises in 1998, BIOMET 2 (January), BIOMET 3 (beginning of March), PEGASE (June) and six cruises in 1999, PLAGIA 1 to 6 (late February, late April, late May, late June, the middle of July and the beginning of October). Winter algal blooms, essentially diatoms, were actually observed both in the typical waters of the plume (S < 34.5) and at the limit of the plume and adjacent atlantic oceanic waters (S > 34.5) in the successives years 1998 and 1999. These blooms were initiated by the occurrence of short anticyclonic windows in winter, acting on physical processes which dominate the evolution and characteristics of the Gironde plume (runoff, wind direction and speed) and, ultimately, on the evolution of the depth of the mixed layer (haline stratification) and available light (decrease of turbidity). The algal growth was actually phosphorus limited in the typical waters of the plume at the end of the winter bloom, in spring and became nitrogen and phosphorus limited in summer until the first autumn gales restored the nutritive balance. More oceanic waters (S > 34.5) were probably N+P limited from the end of the winter-the beginning of spring to autumn. Phosphorus limitation of winter blooms, associated with girondine unbalanced nutritive supplies (high NO3/PO4 ratios) favoured the development of small cells at the beginning of spring and the later presence of spring blooms (June 1998, late May 1999) composed of pico and nanophytoplankton (nanoflagellates), instead of typical diatom spring blooms for temperate waters. This size reduction of algal communities is strongthened by the competition between phytoplankton and bacteria for the phosphate uptake, bacteria being more competitives at low concentrations and being phosphorus limited sometimes in spring. The decreasing size of algal cells probably acted on the structuration of the whole food web. The study of the different forms of phosphorus displayed the importance of the Dissolved Organic Phosphorus (DOP) pool. The potential biological lability and the capacity of algae and bacteria to use the DOP in spring when phosphate are undetectable was shown by the very high specific activities of alkaline phosphatases and the very rapid cycling of phosphate monoesters. According to the few estimations of actual phosphatasic activity and phosphate assimilation fluxes, the hydrolysis of DOP associated with the coupled assimilation of liberated phosphate would represent 91 to 99 % of the phosphorus fluxes into algal and bacterial cells when phosphate were exhausted. In such conditions DOP could satisfy most of microorganisms phosphorus needs.
Cette thèse s’inscrit dans le cadre du Chantier Atlantique du Programme National d’Océanographie Côtière (PNOC, PNEC depuis 1999). Les objectifs de ce travail étaient (1) de vérifier l’existence et comprendre le déterminisme de blooms phytoplanctoniques hivernaux dans les eaux du Golfe de Gascogne influencées par la Gironde, (2) de préciser le facteur limitant de la production primaire associée à ces blooms et de suivre l’évolution saisonnière de ce facteur et (3) de comprendre les conséquences de cette limitation précoce sur la structuration des populations algales au printemps. Le phosphore étant supposé être le principal élément limitant de la croissance algale dans le panache de la Gironde, les différentes composantes du cycle du phosphore ainsi que le compartiment bactérien, central dans ce cycle, ont été étudiés en terme de stock et de flux. La stratégie d’échantillonnage a consisté en trois campagnes en 1998, BIOMET 2 (janvier), BIOMET 3 (début mars), PEGASE (juin) et six campagnes en 1999, PLAGIA 1 à 6 (fin février, fin avril, fin mai, fin juin, mi-juillet et début octobre). Des efflorescences algales hivernales, constituées essentiellement de diatomées, ont effectivement été observées de façon récurrente dans les eaux typiques du panache (S < 34,5) et à la limite du panache et des eaux océaniques atlantiques adjacentes (S > 34,5) au cours des deux années successives 1998 et 1999. Ces blooms ont été engendrés par l’apparition de courtes fenêtres anticycloniques en période hivernale, ces fenêtres interférant sur les processus physiques qui prévalent sur l’évolution et les caractéristiques du panache de la Gironde (régime des débits, orientation et force du vent) et, de façon ultime, sur l’évolution de la profondeur de la couche de mélange (halostratification) et la disponibilité en lumière (diminution de la turbidité). La croissance algale était limitée par le phosphore dans les eaux typiques du panache à la fin du bloom hivernal, au printemps et devint limitée en azote et en phosphore en période estivale et ceci jusqu’à ce que les premières tempêtes automnales rétablissent l’équilibre nutritif des eaux. Les eaux à caractère plus océanique (S > 34,5) étaient plus probablement limitées par N+P dès la fin de l’hiverdébut du printemps et ce jusqu’à l’automne. La limitation des blooms hivernaux par le phosphore, associée à des apports nutritifs girondins déséquilibrés en phosphate (rapports NO3/PO4 élevés) a favorisé le développement de cellules de petite taille au début du printemps et la présence ultérieure de blooms printaniers (juin 1998, fin mai 1999) composés de pico- et de nanophytoplancton (nanoflagellés), blooms « atypiques » pour des eaux tempérées à cette saison. Cette structuration des communautés algales est renforcée par la compétition entre le phytoplancton et les bactéries pour l’acquisition du phosphate, les bactéries étant plus compétitives aux faibles teneurs en phosphate et pouvant être elles-mêmes limitées par le phosphore à certains moments du printemps. La diminution de taille des cellules algales a probablement une incidence sur la structure de taille de l’ensemble du réseau trophique. L’étude des différentes composantes du phosphore montre l’importance du pool de Phosphore Organique Dissous (POD), sa labilité biologique potentielle et la capacité des communautés algales et bactériennes à utiliser ce pool au printemps quand les phosphates sont indétectables (activités spécifiques des phosphatases alcalines très élevées, recyclage très rapide des monoesters de phosphate). Au vu des quelques estimations de l’activité phosphatasique réelle et des flux d’assimilation de phosphate, l’hydrolyse du POD associée à l’assimilation couplée du phosphate libéré représenterait 91 à 99 % des flux de phosphore vers les cellules algales et bactériennes, quand les phosphates du milieu sont déficients. Dans de telles conditions, le POD pourrait satisfaire l’essentiel des besoins des microorganismes en phosphore.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00013/12463/9298.pdf
http://archimer.ifremer.fr/doc/00013/12463/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This study addresses the mechanical and chemical behavior of allanite during shear zone formation under high-pressure metamorphism. Understanding physico-chemical processes related to the retention or resetting of Pb isotopes in allanite during geological processes is essential for robust petrochronology. Dating of allanite in meta-granodiorite showing variable amounts of strain (from an undeformed protolith to mylonite) at Monte Mucrone (Sesia Zone, NW Italy) gave surprising results. Based on structural and petrographic observations the shear zones at Mt Mucrone are Alpine, yet allanite located within an eclogite facies mylonite yielded Permian ages (208Pb/232Th average age: 287 ± 7 Ma). These mm-sized allanite grains are rimmed by an aggregate of coarse-grained garnet + phengite, thought to derive from former epidote. These aggregates were immersed in a weak matrix that experienced granular flow, and they were thus chemically and mechanically shielded during Alpine mylonitization. In undeformed samples (8a and 8b), two populations of epidote group minerals were found. Allanite forms either coronas around Permian monazite or individual grains with patchy zoning. Both types yield Permian ages (208Pb/232Th age: 291 ± 5 Ma). On the other hand, grains of REE-rich clinozoisite of Cretaceous age are found in undeformed rocks. These grains appear as small fragments with embayed surface outlines and minute satellites or rims around Permian allanite. These (re)crystallized grains are Sr-rich and show mosaic zoning. These results indicate that allanite crystals retained their chemical and isotopic characteristics, and thus their Permian age, as a result of strong strain partitioning between the epidote group porphyroclasts and the eclogite facies matrix in HP-mylonites. The observed partial mobilization of Pb isotopes, which lead to the Cretaceous-aged rims or grains in undeformed samples was facilitated by (re)crystallization of allanite and not by mere Pb diffusion alone under the HP conditions.
ISSN: 0024-4937

insu-00679730
https://hal-insu.archives-ouvertes.fr/insu-00679730
DOI : 10.1016/j.lithos.2011.01.005

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The full numerical simulation of turbulent flows in the context of industrial applications remains a very challenging problem. One of the difficulties is the presence of a large number of interacting scales of different orders of magnitude, ranging from the macroscopic scale to the Kolmogorov dissipation scale. In order to better understand and simulate these interactions, new algorithms of incremental type have recently been introduced, stemming from the theory of infinite-dimensional dynamical systems (see, e.g., the algorithms of Foias, Jolly et al. (1988), Foias, Manley and Temam (1988), Laminie et al. (1993, 1994), Marion and Temam (1989, 1990), and Temam (1990)). These algorithms are based on decompositions of the unknown functions into a large- and a small-scale component, one of the underlying ideas being to approximate the corresponding attractor. In the context of finite element methods, the decomposition of a solution into small- and large-scale components appears when we consider hierarchical bases (Yserentant, 1986; Zienkiewicz et al., 1982). In the present article we derive several estimates of the size of the structures for the linear and nonlinear terms which correspond to interactions of different hierarchical components of the velocity field, and also their time variation. The one-step time variation of these terms can be smaller than the expected accuracy of the computation. Using this remark, we implement an adaptive spatial and temporal multilevel algorithm which treats differently the small- and large-scale components of the flow. We derive several a priori estimates in order to study the perturbation introduced into the approximated equations. All the interaction terms between small- and large-scale structures are frozen during several time steps. Finally, we implement the multilevel method in order to simulate a bidimensional flow described by the Burgers equations. We perform a parametric study of the procedure and its efficiency. The gain in CPU time is significant and the trajectories computed by our multi-scale method remain close to the trajectories obtained with the classical Galerkin method.
ISSN: 0168-9274

hal-00730710
https://hal.archives-ouvertes.fr/hal-00730710

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : En l’espace de trente ans, la petite île de Saint-Barthélemy (25 km²) est sortie de son isolement séculaire pour s’imposer parmi les grandes destinations du tourisme de luxe dans le monde. Dans le cadre de cette étude, l’idée est d’identifier les éléments structurels et les différents facteurs conjoncturels qui permettent de comprendre la situation touristique de Saint-Barthélemy. L’exiguïté du territoire en lui-même peut être perçue comme un handicap fondamental ou, inversement, comme un atout considérable. Tout dépend du projet de développement. Il faut savoir tirer profit des spécificités du territoire considéré. Dans le cas de Saint-Barthélemy, l’exiguïté favorise la rareté et cette rareté convoitée n’est accessible qu’aux personnes les plus argentées. La rareté convoitée conduit au luxe. L’isolement est relatif : cette destination n’est pas accessible aux avions gros porteurs, l’essentiel du marché aérien est contrôlé par deux petites compagnies locales et l’espace aérien est ouvert aux petits avions privés. Le luxe ne se décrète pas, il ne se planifie pas. Le tourisme de luxe, c’est l’élection d’un territoire par des élites qui s’y retrouvent pour jouir de leur fortune à l’écart du monde.
Within thirty years, the small island of Saint-Barthelemy (25 km²) is out of its secular isolation to be among major luxury tourism destinations in the world. In this study, the idea is to identify structural element and different cyclical factors that help to understand Saint-Barthelemy tourism situation. The small size of the territory itself can be seen as a fundamental handicap or, conversely, as a considerable asset. Everything depends on development project. It is necessary to know how to take advantage of specific characteristics of this type of territory. In Saint-Barthelemy case, scarcity is coveted; this coveted rarity is accessible only for rich people. The coveted rarity leads to luxury. Isolation is relative: this destination is not accessible to the jumbo jets. The airline market is controlled essentially by two small local companies and the airspace is open to charter flies and private aircrafts. Some other companies provide more or less regular flights from nearby airports of San Juan (Puerto Rico), Sint-Maarten and Guadeloupe. Luxury cannot be decreed, it is not planned. Luxury tourism is the election of a territory by elites who gather there to enjoy away from the rest of the world.
Saint-Barthélemy

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6831
http://journals.openedition.org/etudescaribeennes/6831

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Several studies, both theoretical and experimental, show that sedimentary rocks have fractal pore-grain interface. The real rocks are 3-d structures with highly tortuous and often fractal pore spaces. Before attempting simulation of this daunting geometry, we present here, as a preliminary study, a simpler 2-d version. In this paper, a computer simulated 2-d sedimentary rock structure is generated by the relaxed bidisperse ballistic deposition model. Grains of two different sizes are dropped ballistically on a linear substrate. By changing the fraction of the two types of particles, the porosity of the rock structure can be tuned. The structure undergoes compaction through the relaxation of possible unstable overhangs. The micro structure of the pore space is investigated. The pore mass and the rock-pore interface show a fractal behaviour with the same fractal dimension indicating that the pore volume is a fractal. Our simulation results indicate that the process of compaction of grains during the deposition process seems to erase the dependency of the fractal dimension on the grain size distribution. The two point density correlation is measured for the pore space. It shows anisotropy which is an outcome of the growth rule. X-ray tomography of two-dimensional sections of real sedimentary rocks obtained from Mallorca Island is subjected to the same study and the results compared with those obtained from simulation. The simulation results agree qualitatively with the real rock sample. We also study diffusion on the pore space. Diffusion is found to be anomalous as is expected in fractal spaces. It also bears the signature of anisotropy of the structure. Diffusion studies on the real rock sample could not yield conclusive results as the system size is not large enough.
ISSN: 0926-9851

hal-00761818
https://hal.archives-ouvertes.fr/hal-00761818
DOI : 10.1016/j.jappgeo.2012.09.002

Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : International audience
Key message: Genetic diversity appears to be unaffected by disturbance in a stand of the light-demanding Neotropical treeV. michelii. Although spatial genetic structure is modified in post-disturbance cohorts, mixing of seeds from different mother trees in canopy gaps appears to efficiently maintain genetic admixture. Context: The interplay between genetic and demographic processes has major consequences on population viability. Population size affects demographic trends, while genetic diversity insures viability by reducing risks of inbreeding depression and by maintaining adaptive potential. Yet, the consequences of increases in census size (as opposed to effective size) on genetic diversity of forest populations are poorly known. Aims: We have studied the structure of genetic diversity in populations of saplings of the light-responsive tree, Virola michelii (Myristicaceae, the nutmeg family), in two plots having undergone different levels of canopy-gap opening disturbance. This allowed us to test the “intermediate disturbance” hypothesis, which generally applies to species diversity, at the intra-specific scale. Methods: Levels and distribution of genetic diversity were compared between plots and between life stages. Sapling parentage was analysed to infer each adult tree’s contribution to regeneration. Results: Genetic diversity was higher, and spatial genetic structure was stronger in the post-disturbance than in the control seedling population. Parentage analysis suggested that a limited number of parents contributed to most of the regeneration, but that efficient mixing of their progeny may have enhanced the diversity of saplings occupying canopy gaps. Conclusion: A mixture of demo-genetic processes may contribute to maintain genetic diversity in spite of, or possibly due to, ecosystem disturbance in V. michelii.
ISSN: 1286-4560

hal-01502942
https://hal-agroparistech.archives-ouvertes.fr/hal-01502942
https://hal-agroparistech.archives-ouvertes.fr/hal-01502942/document
https://hal-agroparistech.archives-ouvertes.fr/hal-01502942/file/art_10.1007_s13595-015-0508-3-1_%7B869D58F4-272C-491F-A903-DAD6CDBDC042%7D.pdf
DOI : 10.1007/s13595-015-0508-3