Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
We analyse P-wave receiver functions across the western Gulf of Aden and southern Red Sea continental margins in Western Yemen to constrain crustal thickness, internal crustal structure and the bulk seismic velocity characteristics in order to address the role of magmatism, faulting and mechanical crustal thinning during continental breakup. We analyse teleseismic data from 21 stations forming the temporary Young Conjugate Margins Laboratory (YOCMAL) network together with GFZ and Yemeni permanent stations. Analysis of computed receiver functions shows that (1) the thickness of unextended crust on the Yemen plateau is ∼35km; (2) this thins to ∼22km in coastal areas and reaches less than 14km on the Red Sea coast, where presence of a high-velocity lower crust is evident. The average Vp/Vs ratio for the western Yemen Plateau is 1.79, increasing to ∼1.92 near the Red Sea coast and decreasing to 1.68 for those stations located on or near the granitic rocks. Thinning of the crust, and by inference extension, occurs over a ∼130-km-wide transition zone from the Red Sea and Gulf of Aden coasts to the edges of the Yemen plateau. Thinning of continental crust is particularly localized in a <30-km-wide zone near the coastline, spatially co-incident with addition of magmatic underplate to the lower crust, above which on the surface we observe the presence of seaward dipping reflectors (SDRs) and thickened Oligo-Miocene syn-rift basaltic flows. Our results strongly suggest the presence of high-velocity mafic intrusions in the lower crust, which are likely either synrift magmatic intrusion into continental lower crust or alternatively depleted upper mantle underplated to the base of the crust during the eruption of the SDRs. Our results also point towards a regional breakup history in which the onset of rifting was synchronous along the western Gulf of Aden and southern Red Sea volcanic margins followed by a second phase of extension along the Red Sea margin.
ISSN: 0956-540X

hal-00825194
https://hal.archives-ouvertes.fr/hal-00825194
https://hal.archives-ouvertes.fr/hal-00825194/document
https://hal.archives-ouvertes.fr/hal-00825194/file/RF_Hakim2012_GJI.pdf
DOI : 10.1093/gji/ggt072

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Understanding the factors underlying the spatio-temporal distribution of infectious diseases provides useful information regarding their prevention and control. Dengue fever spatio-temporal patterns result from complex interactions between the virus, the host, and the vector. These interactions can be influenced by environmental conditions. Our objectives were to analyse dengue fever spatial distribution over New Caledonia during epidemic years, to identify some of the main underlying factors, and to predict the spatial evolution of dengue fever under changing climatic conditions, at the 2100 horizon. We used principal component analysis and support vector machines to analyse and model the influence of climate and socio-economic variables on the mean spatial distribution of 24,272 dengue cases reported from 1995 to 2012 in thirty-three communes of New Caledonia. We then modelled and estimated the future evolution of dengue incidence rates using a regional downscaling of future climate projections. The spatial distribution of dengue fever cases is highly heterogeneous. The variables most associated with this observed heterogeneity are the mean temperature, the mean number of people per premise, and the mean percentage of unemployed people, a variable highly correlated with people's way of life. Rainfall does not seem to play an important role in the spatial distribution of dengue cases during epidemics. By the end of the 21st century, if temperature increases by approximately 3°C, mean incidence rates during epidemics could double. In New Caledonia, a subtropical insular environment, both temperature and socio-economic conditions are influencing the spatial spread of dengue fever. Extension of this study to other countries worldwide should improve the knowledge about climate influence on dengue burden and about the complex interplay between different factors. This study presents a methodology that can be used as a step by step guide to model dengue spatial heterogeneity in other countries.
ISSN: 1935-2727

Droits : http://creativecommons.org/licenses/by/
pasteur-01247037
https://hal-riip.archives-ouvertes.fr/pasteur-01247037
https://hal-riip.archives-ouvertes.fr/pasteur-01247037/document
https://hal-riip.archives-ouvertes.fr/pasteur-01247037/file/journal.pntd.0004211.pdf
DOI : 10.1371/journal.pntd.0004211

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La construction historique des sociétés caribéennes est indissociable des mouvements migratoires séculaires qui les ont animées. Le cadre politico-juridique favorable aux migrations antillaises vers leur métropole rend compte de la vigueur des courants migratoires issus des territoires dépendants de la région ainsi que de leur orientation quasi-exclusive vers les métropoles. La problématique migratoire se pose en des termes différents concernant les territoires indépendants. L’analyse de trois populations caribéennes — les Portoricains, les Franco-antillais, les Haïtiens — interroge la particularité des contextes politico-institutionnels des sociétés d’origine en lien avec les modalités singulières de leur colonisation. Au regard de la remarquable diversité des statuts politiques des territoires de la Caraïbe, l’analyse du lien entre migration et fait colonial nécessite de s’interroger sur l’influence de ces derniers sur la temporalité, l’ampleur, la composition et la spatialisation des mouvements de populations.
The making of Caribbean societies is indissociable from long-term migration movements. The favourable politico-legal framework of Caribbean migrations towards their metropoles accounts for the strength of migration streams from politically dependent territories in the region. It also accounts for their spatial configuration as ‘migratory couples’. The issue is different as far as independent territories are concerned. The analysis of three Caribbean populations – Puerto Ricans, French West Indians, Haitians – questions the particularity of the politico-institutional contexts of source societies in relation with the singular modalities of their colonization. Given the remarkable diversity of political statuses in the Caribbean, the analysis of the relation between migration and the colonial history requires to question the influence of these statuses on the temporality, the scale, the composition and the spatialization of population movements.

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.922
http://journals.openedition.org/etudescaribeennes/922

Éditeur(s) : Elsevier
Résumé : High P-wave velocities (7.1-7.8 km/s) lower crustal bodies (LCBs) imaged along volcanic margins are commonly interpreted as plume and break-up-related thick mafic underplating. This interpretation is partly challenged in this paper based on new seismic observations and modelling of the outer Voring Basin (Norway). An exceptional strong amplitude reflection, the T Reflection, is particularly well defined below the North Gjallar Ridge (NGR) between 7 and 8 s TWT. The T Reflection is located near the volcanic lava flows emplaced during the NE Atlantic breakup (similar to 55-54 Ma ago) and coincides with the top of the LCB, forming a mid-crustal dome. Based on structural and temporal relationships, we show that the dome clearly influences the structural development of the NGR and predates the continental breakup at least by 10-15 Ma. Using a thermo-kinematical model, we tried also to investigate and quantify the relationships between the extension, LCB and the magmatic production. Modelling suggests that significant Paleocene-Early Eocene magmatism can be produced without any temperature anomaly in the mantle if differential stretching occurs during the break-up initiation. The conclusion of 2D thermo-kinematical parametric analysis is that the magmatic model predicts, either little extension (beta < 2) with no melting or high extension (beta > 5) with significant melting along the outer Voring Basin. We suggest that the continental part of the LCB could not necessarily be breakup-related and so magmatic, as has often been stated previously. It is concluded here that the continental part of the LCB observed beneath the outer Voring Basin may be partly (or fully) attributed to inherited, high-pressure granulite/eclogite lower crustal rocks. The real amount of mafic material emplaced along the outer Voring Basin could be 20-40% less than thought.
Tectonophysics (0040-1951) (Elsevier), 2006 , Vol. 412 , N. 3-4 , P. 255-278

Droits : 2005 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2006/publication-1042.pdf
DOI:10.1016/j.tecto.2005.10.038
http://archimer.ifremer.fr/doc/00000/1042/

Éditeur(s) : Inter-research
Résumé : Environmental conditions experienced by aquatic organisms are archived in biogenic carbonates such as fish otoliths, bivalve shells and coral skeletons. These calcified structures present an accretionary growth and variations in optical properties - color or opacity - that are used to reconstruct time. Full and reliable exploitation of the information extracted from these structures is, however, often limited as the metabolic processes that control their growth and their optical properties are poorly understood. Here, we propose a new modeling framework that couples both the growth of a biogenic carbonate and its optical properties with the metabolism of the organism. The model relies on well-tested properties of Dynamic Energy Budget (DEB) theory. It is applied to otoliths of the Bay of Biscay anchovy (Engraulis encrasicolus) for which a DEB model has been previously developed. The model reproduces well-known otolith patterns and thus provides us with mechanisms for the metabolic control of otolith size and opacity at the scale of an individual lifespan. Two original contributions using this framework are demonstrated. First, the model can be used to reconstruct the temporal variations in the food assimilated by an individual fish. Reconstructing food conditions of past and present aquatic species in their natural environment is key ecological information to better understand population dynamics. Second, we show that non-seasonal checks can be discriminated from seasonal checks, which is a well-recognized problem when interpreting fish otoliths. We discuss further developments of the model and the experimental settings required to test this new promising framework.
Marine Ecology-progress Series (0171-8630) (Inter-research), 2012 , Vol. 447 , P. 151-164

Droits : 2012 Inter-Research
http://archimer.ifremer.fr/doc/00060/17082/14593.pdf
DOI:10.3354/meps09492
http://archimer.ifremer.fr/doc/00060/17082/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Microalgae in the division Haptophyta play key roles in the marine ecosystem and in global biogeochemical processes. Despite their ecological importance, knowledge on seasonal dynamics, community composition and abundance at the species level is limited due to their small cell size and few morphological features visible under the light microscope. Here, we present unique data on haptophyte seasonal diversity and dynamics from two annual cycles, with the taxonomic resolution and sampling depth obtained with high-throughput sequencing. From outer Oslofjorden, S Norway, nano- and picoplanktonic samples were collected monthly for 2years, and the haptophytes targeted by amplification of RNA/cDNA with Haptophyta-specific 18S rDNA V4 primers. We obtained 156 operational taxonomic units (OTUs), from c. 400.000 454 pyrosequencing reads, after rigorous bioinformatic filtering and clustering at 99.5%. Most OTUs represented uncultured and/or not yet 18S rDNA-sequenced species. Haptophyte OTU richness and community composition exhibited high temporal variation and significant yearly periodicity. Richness was highest in September-October (autumn) and lowest in April-May (spring). Some taxa were detected all year, such as Chrysochromulina simplex, Emiliania huxleyi and Phaeocystis cordata, whereas most calcifying coccolithophores only appeared from summer to early winter. We also revealed the seasonal dynamics of OTUs representing putative novel classes (clades HAP-3-5) or orders (clades D, E, F). Season, light and temperature accounted for 29% of the variation in OTU composition. Residual variation may be related to biotic factors, such as competition and viral infection. This study provides new, in-depth knowledge on seasonal diversity and dynamics of haptophytes in North Atlantic coastal waters. See also the Perspective by Massana
ISSN: 0962-1083

hal-01545321
https://hal.archives-ouvertes.fr/hal-01545321
DOI : 10.1111/mec.13160

Éditeur(s) : HAL CCSD Institute of Electrical and Electronics Engineers Inc.
Résumé : International audience
An important issue in epilepsy research is to understand the structural and functional modifications leading to chronic epilepsy, characterized by spontaneous recurrent seizures, after initial brain insult. To address this issue, we recorded and analyzed electroencephalography (EEG) and quantitative magnetic resonance imaging (MRI) data during epileptogenesis in the in vivo mouse model of Medial Temporal Lobe Epilepsy (MTLE, kainate). Besides, this model of epilepsy is a particular form of drug-resistant epilepsy. The results indicate that high-field (4.7T) MRI parameters (T2-weighted; T2-quantitative) allow to detect the gradual neuro-anatomical changes that occur during epileptogenesis while electrophysiological parameters (number and duration of Hippocampal Paroxysmal Discharges) allow to assess the dysfunctional changes through the quantification of epileptiform activity. We found a strong correlation between EEG-based markers (invasive recording) and MRI-based parameters (non-invasive) periodically computed over the 'latent period' that spans over two weeks, on average. These results indicated that both structural and functional changes occur in the considered epilepsy model and are considered as biomarkers of the installation of epilepsy. Additionally, such structural and functional changes can also be observed in human temporal lobe epilepsy. Interestingly, MRI imaging parameters could be used to track early (day-7) structural changes (gliosis, cell loss) in the lesioned brain and to quantify the evolution of epileptogenesis after traumatic brain injury. © 2016 IEEE.
38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016
Unknown, Unknown or Invalid Region

hal-01467552
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01467552
DOI : 10.1109/EMBC.2016.7591605

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Les îles ont longtemps été étudiées comme de simples lieux périphériques, inscrits dans le prolongement de logiques continentales ; des espaces dépourvus de sens en dehors du prisme des puissances métropolitaines. A travers le champ des études insulaires, il s’agit désormais de croiser les différentes expériences insulaires, de poser les contextes de développement et d’étudier les configurations et les temporalités spécifiques des îles. Étudier les îles nécessite de prendre la mesure de ces territoires -loin de toute vision monolithique-, d’analyser leur espace au regard des réalités sociale et politique, de cerner leur poids économique et leur contexte de développement, des héritages de l’histoire à la prise en compte de leur voisinage géographique. Il s’agit de prendre en considération les logiques exogènes qui font l’île et d’interroger les dynamiques internes.Le sujet d’étude est l’île, l’objet «île », l’île dans la gestion de son espace, la définition de son projet territorial, le positionnement de l’île dans son environnement respectif et les opportunités et stratégies dans l’économie mondialisée. La richesse des enseignements des territoires et des sociétés insulaires débordent le simple cadre spatial de l’île qui peut être entendue comme une synecdoque, un microcosme commode et raisonnable du continent.
Islands were studied for a long time as simple peripheral territories, territories which flesh out the seamless continuation of continental logic, meaningless territories without the prism and perspective of metropolitan power. Through the field of the island studies, critical questions cross various island experiences and their context of development and their configurations; or otherwise study specific temporalities, connectivities and materialities, in the context of globalization. To study islands requires taking the measure of these territories, far from any monolithic vision, to analyze their space with regard to their social and political realities, to identify their economic clout and their context of development and the legacies of the history, in consideration of their geographical neighbourhood. It is a question of considering the exogenous logics which make the island and interrogate its internal dynamics.The subject of study is the island, "island" as object, the island in the management of its space, the definition of its territorial project, the positioning of the island in its environmental perspective and the opportunities it enjoys and the strategies it deploys in the globalized economy. The wealth of scholarship of and about islands and island societies extends beyond the simple spatial frame of the island; ‘the Island’ can be understood as a synecdoche, a convenient, manageable and reasonable microcosm of the continent.

Droits : info:eu-repo/semantics/openAccess
http://journals.openedition.org/etudescaribeennes/7272

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Heterogeneous patterns of malaria transmission are thought to be driven by factors including host genetics, distance to mosquito breeding sites, housing construction, and socio-behavioural characteristics. Evaluation of local transmission epidemiology to characterize malaria risk is essential for planning malaria control and elimination programmes. The use of geographical information systems (GIS) techniques has been a major asset to this approach. To assess time and space distribution of malaria disease in Bandiagara, Mali, within a transmission season, data were used from an ongoing malaria incidence study that enrolled 300 participants aged under six years old ". Methods: Children's households were georeferenced using a handheld global position system. Clinical malaria was defined as a positive blood slide for Plasmodium falciparum asexual stages associated with at least one of the following signs: headache, body aches, fever, chills and weakness. Daily rainfall was measured at the local weather station. Landscape features of Bandiagara were obtained from satellite images and field survey. QGIS™ software was used to map malaria cases, affected and non-affected children, and the number of malaria episodes per child in each block of Bandiagara. Clusters of high or low risk were identified under SaTScan W software according to a Bernoulli model. Results: From June 2009 to May 2010, 296 clinical malaria cases were recorded. Though clearly temporally related to the rains, Plasmodium falciparum occurrence persisted late in the dry season. Two " hot spots " of malaria transmission also found, notably along the Yamé River, characterized by higher than expected numbers of malaria cases, and high numbers of clinical episodes per child. Conversely, the northeastern sector of the town had fewer cases despite its proximity to a large body of standing water which was mosquito habitat. Conclusion: These results confirm the existence of a marked spatial heterogeneity of malaria transmission in Bandiagara, providing support for implementation of targeted interventions. Background Malaria is one of the leading causes of morbidity and mortality in the world, with an estimated 3.3 billion people at risk of malaria [1]. The incidence of malaria worldwide is estimated to be 216 million cases per year, with 81% of these cases occurring in sub-Saharan Africa. Malaria kills approximately 655,000 people per year; 91% of deaths occur in sub-Saharan Africa [1], mostly in children under five years of age. In Mali, West Africa, malaria represents 36.5% of consultation motives in health center, it is a leading cause of morbidity and mortality children of less than five years of age and the first reason of anaemia in pregnant women [2]. Malaria transmission is seasonal. Malaria parasite transmission and clinical disease are characterized by important microgeographic variation, often between adjacent villages, households or families [3-8]. This local heterogeneity is driven by a variety of factors including human genetics [9,10], distance to potential breeding sites [11,12], housing construction
ISSN: 1475-2875

hal-01307672
https://hal-amu.archives-ouvertes.fr/hal-01307672
https://hal-amu.archives-ouvertes.fr/hal-01307672/document
https://hal-amu.archives-ouvertes.fr/hal-01307672/file/1475-2875-12-82.pdf
DOI : 10.1186/1476-072X-2-5

Éditeur(s) : Amer Geophysical Union
Résumé : Large rivers are key hydrologic components in oceanography, particularly regarding air-sea and land-sea exchanges and biogeochemistry. We enter now in a new era of Sea Surface Salinity (SSS) observing system from Space with the recent launches of the ESA Soil Moisture and Ocean Salinity (SMOS) and the NASA Aquarius/Sac-D missions. With these new sensors, we are now in an excellent position to revisit SSS and ocean color investigations in the tropical northwest Atlantic using multi-year remote sensing time series and concurrent in situ observations. The Amazon is the world's largest river in terms of discharge. In its plume, SSS and upper water column optical properties such as the absorption coefficient of colored detrital matter (acdm) are strongly negatively correlated (<-0.7). Local quasi-linear relationships between SSS and acdm are derived for these plume waters over the period of 2010-2013 using new spaceborne SSS and ocean color measurements. Results allow unprecedented spatial and temporal resolution of this coupling. These relationships are then used to estimate SSS in the Amazon plume based on ocean color satellite data. This new product is validated against SMOS and in situ data and compared with previously developed SSS retrieval models. We demonstrate the potential to estimate tropical Atlantic SSS for the extended period from 1998 to 2010, prior to spaceborne SSS data collection.
Journal Of Geophysical Research-oceans (0148-0227) (Amer Geophysical Union), 2015-05 , Vol. 120 , N. 5 , P. 3177-3192

Droits : 2015. American Geophysical Union. All Rights Reserved.
http://archimer.ifremer.fr/doc/00255/36610/35742.pdf
DOI:10.1002/2014JC010109
http://archimer.ifremer.fr/doc/00255/36610/

Résumé : The management of marine fish stocks has stayed non-spatial, considering spatial distributions and their consequences on demography as implicit. But the impacts of climate change and the anthropisation of habitats now require to consider spatial procedures explicitly. The work presented here starts with the question of evaluating population abundance, which requires the modelling of spatial distributions (section 1). Then an ecological understanding of the multi-scale nature of distributions is investigated (section 2). Last, we study how demographic population dynamics depends on the spatial organisation of life cycles (section 3). In this work, the approach has been to combine data acquisition at sea with statistical characterisation and modelling. The application of geostatistics to fisheries survey data provided a solution to abundance evaluation and mapping for many different survey designs. A variety of models were implemented (stationary, non-stationary, non-linear, multivariate, spatio-temporal), depending on the statistical characteristics of the data and the problem posed. Sampling bias were identified by combining different survey methods. New procedures for assessing stocks based on indicators including spatial ones were developed, which prepared for ecosystem assessments. (...)
La gestion des stocks de poissons marins est longtemps restée a-spatiale, considérant implicites les mécanismes d’organisation spatiale qui soutiennent la distribution géographique des ressources et leur dynamique démographique. Mais l’impact du changement climatique et l’anthropisation des habitats nécessitent d’en tenir compte explicitement. Partant de questions d’évaluation qui ont nécessité la modélisation des distributions spatiales (section 1), le déterminisme écologique de ces distributions a ensuite été abordé à différentes échelles (section 2) puis ont été envisagées les conséquences de l’organisation spatiale sur la dynamique démographique des populations (section 3). L’approche scientifique suivie intègre l’acquisition de données à la mer, la caractérisation statistique et la modélisation. L’application de la géostatistique aux données des campagnes halieutiques permet de proposer une solution à l’estimation d’abondance et la cartographie pour une variété de plans d’échantillonnage. Différents modèles sont mis en oeuvre (stationnaires, non-stationnaires, non-linéaires, multivariés, spatio-temporels) en fonction du comportement des données et du problème posé. Des biais d’échantillonnage sont identifiés en combinant différentes méthodes d’échantillonnage. Des procédures nouvelles d’évaluation de stocks à partir d’indicateurs dont des indicateurs spatiaux sont développées, qui préparent à l’évaluation des écosystèmes. (...)

Droits : Ifremer, UPMC
http://archimer.ifremer.fr/doc/00013/12410/9197.pdf
http://archimer.ifremer.fr/doc/00013/12410/

Éditeur(s) : Interciencia
Résumé : Zooplankton abundance, biomass and composition were evaluated in various temporal scales in a seasonal coastal upwelling system at Margarita Island, Venezuela. Scales of temporal variation include weeks, months and seasons (relaxation, upwelling and transition). Seasons were delimitated by upwelling index and sea temperature. The sampling period comprise Sept/2002 - July/2003. Zooplankton samplings were made by horizontal trawls (1-10m depth), using 200,mu m nets, 2-6km from the coastal margin. Total abundance show important variation at week scales, with different patterns between locations, while seasonal differences of abundance are marginal. Biomass only shows seasonal variation due significant reduction in the transition season. Zooplankton assemblages show changes at scale of weeks, with different local patterns, and seasonal changes. Changes in assemblage between the relaxation and upwelling seasons include reduction (during upwelling) of abundance in copepods, cladocerans, salpidae, chaetognates, fish and crustacea larvae. Except by cirripedia larvae, those were important in the upwelling assemblages. Transition shows high variation, with reduction of biomass and assemblage composition similar to upwelling, except by an isolated event. Small scale variation in the zooplankton could be related to physical processes at small scales, eg. turbulence, local circulation, small eddies and filaments, and biological response. Additional sources of nutrient input, eg. riverine input and internal waves, could support local plankton productivity and abundance during relaxation. Detection of high variation in zooplankton abundance and composition at small scales, with local interaction, bring a new light over zooplankton estimation in time series in this system.
La abundancia, la biomasa y la composición del zooplancton costero fueron analizadas a varias escalas temporales en un área afectada por surgencia costera estacional (Isla de Margarita, Venezuela); considerando para ello escalas de semanas, meses y periodos, así como la variación local. La estimación del zooplancton fue realizada a partir de arrastres horizontales (1-10m de profundidad) utilizando redes de 200μ entre 2 y 6 km de la línea de costa, entre set/2002 y jul/2003. La abundancia total presentó alta variabilidad a escala de semanas, con patrones diferentes entre localidades, mientras que la diferencia entre periodos es marginal. La biomasa únicamente mostró variación a escala de periodos por una disminución durante el periodo de transición. La composición presentó fluctuaciones a escalas temporales pequeñas, con patrones de variación diferentes localmente, así como a escala de periodos. Los cambios en composición entre el periodo de relajación y el de surgencia incluyen disminución en la abundancia de copépodos, cladóceros, salpas, quetognatos, larvas de peces y crustáceos; excepto por las larvas de cirrípedos que forman un componente importante durante la surgencia. Se postula que procesos físicos a pequeña escala, como la turbulencia, la circulación local o la formación de pequeños giros o filamentos, y los procesos biológicos, condicionan esta elevada variabilidad a escalas pequeñas. La existencia de fuentes de enriquecimiento adicionales como aportes de ríos y ondas internas pudiera condicionar la presencia de elevada abundancia y biomasa, en especial durante periodos de relajación. Los cambios en composición resaltan la importancia del aporte de merozooplancton costero. Palabras clave / Biomasa / Escalas Temporales / Surgencia / Venezuela / Zooplancton Costero /
Interciencia (0378-1844) (Interciencia), 2014-02 , Vol. 39 , N. 2 , P. 122-128

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00187/29851/28297.pdf
http://archimer.ifremer.fr/doc/00187/29851/

Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
The Anopheles midgut hosts diverse bacterial communities and represents a complex ecosystem. Several evidences indicate that mosquito midgut microbiota interferes with malaria parasite transmission. However, the bacterial composition of salivary glands and ovaries, two other biologically important tissues, has not been described so far. In this study, we investigated the dynamics of the bacterial communities in the mosquito tissues from emerging mosquitoes until 8 days after a blood meal containing Plasmodium falciparum gametocytes and described the temporal colonization of the mosquito epithelia. Bacterial communities were identified in the midgut, ovaries, and salivary glands of individual mosquitoes using pyrosequencing of the 16S rRNA gene. We found that the mosquito epithelia share a core microbiota, but some bacteria taxa were more associated with one or another tissue at a particular time point. The bacterial composition in the tissues of emerging mosquitoes varied according to the breeding site, indicating that some bacteria are acquired from the environment. Our results revealed temporal variations in the bacterial community structure, possibly as a result of the mosquito physiological changes. The abundance of Serratia significantly correlated with P. falciparum infection both in the midgut and salivary glands of malaria challenged mosquitoes, which suggests that interactions occur between microbes and parasites. These bacteria may represent promising targets for vector control strategies. Overall, this study points out the importance of characterizing bacterial communities in malaria mosquito vectors.
ISSN: 1664-302X

hal-01546162
https://hal.archives-ouvertes.fr/hal-01546162
DOI : 10.3389/fmicb.2015.01500

Éditeur(s) : Université Bretagne Ouest
Résumé : This work deals with the fishing effects on the diversity dynamics of demersal fish communities, focusing on the biotic interactions. Multispecies indices are used in order to characterize the demersal fish community dynamics of the Bay of Biscay and of the Gulf of Lions. These are the diversity indices, the temporal variability of the total biomass and of the slope of the number size spectra and the slope of the species-area curves (spatial segregation). The yearly bottom trawl surveys EVHOE, CHALIST and MEDITS, carried out in these two areas since 1983 by IFREMER for the stocks assessment provide the data. The differences between areas are related to a fishing index (mean value of the annual landings of demersal fish per surface area). Other areas are included in the analysis when the index values are available from the published literature (North Sea, Scotian Shelf, Kenya, French Guyana). It is argued from the diversity indices analysis that the Gulf of Lions community is more diverse and less disturbed than the Bay of Biscay one. This result is not consistent with a fishing effect but with biogeography. The total biomass variability and the slope variability of size spectra are higher in the most harvested areas than in the least ones. On the contrary, the species-area slope is the lowest in the most harvested areas. Theoretically, biotic interactions decrease the total biomass variability and the spectra slope variability because of compensations and increase the species area slope because of competitive exclusion. It is concluded that harvesting alters biotic interactions and favour local coexistence by decreasing competitive exclusion. The species diversity maintenance depends on competitive exclusion. Hence, biodiversity is threatened not only by a direct fishing effect but also by a dynamics alteration.
Ce mémoire aborde le problème de l'impact de l'exploitation par la pêche sur la dynamique de diversité des peuplements de poissons démersaux. Les effets de la pêche sur le rôle des interactions biotiques entre espèces dans la dynamique des peuplements sont plus particulièrement analysés à l'aide de descripteurs multispécifiques. Les descripteurs utilisés sont les indices de diversité, la variabilité temporelle de la biomasse totale et de la pente multispécifique du spectre de poids et la pente des droites d'accumulation d'espèces mesurant la ségrégation spatiale. Les valeurs de ces indices sont calculées à partir des données de campagnes annuelles de chalutage de fond EVHOE, CHALIST et MEDITS, menées par l'IFREMER depuis 1983 pour l'évaluation des ressources halieutiques dans le golfe de Gascogne et dans le golfe du Lion. Les différences de caractéristiques de dynamique entre les deux peuplements révélées par ces descripteurs sont mises en relation avec un indice d'exploitation (valeur moyenne des débarquements annuels, divisée par la surface du plateau de la région concernée). D'autres régions ont été intégrées dans cette analyse lorsque les valeurs des indicateurs étaient disponibles dans la littérature (Mer du Nord, plateau de Nouvelle-Ecosse, Kenya et Guyane Française). Les indices de diversité utilisés permettent de mettre en évidence que le peuplement du golfe du Lion est plus diversifié et moins soumis à perturbations que celui du golfe de Gascogne. Ces caractéristiques semblent dues à l'histoire biogéographique de ces deux régions et non à un effet de la pêche. La variabilité de la biomasse totale et celle de la pente du spectre multispécifique augmentent depuis les régions les moins exploitées vers les plus exploitées. A l'inverse, la ségrégation spatiale diminue. En théorie, les interactions entre espèces diminuent la variabilité temporelle de la biomasse totale et de la pente du spectre multispécifique, à cause de compensations entre espèces, et augmentent la ségrégation spatiale par exclusion compétitive. L'interprétation donnée des résultats obtenus est ainsi une altération des interactions entre les espèces par l'exploitation. En prélevant de la biomasse, l'exploitation augmente la disponibilité des ressources pour les individus non pêchés. En conséquence, l'exclusion compétitive diminue et la coexistence locale des individus est facilitée. A long terme, la diversité est donc menacée, non seulement par raréfaction des espèces prélevées par l'exploitation mais aussi parce que les interactions sont altérées et que le maintien de la diversité en dépend pour partie.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2000/these-6670.pdf
http://archimer.ifremer.fr/doc/00000/6670/

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : International audience
Surface displacements due to temporal changes in environmental mass redistributions are observable in the coordinate time series of many Global Navigation Satellite System (GNSS) sites. In this study, we investigated the effect of loading on estimates of tectonic velocity computed from campaign-style GNSS observations. The study region is in the Pyrenees mountain range between France and Spain (ResPyr campaigns). In this area, seismic activity is continuous and moderate and the expected amplitude of the horizontal tectonic velocity is less than 0.5 mm/yr. In order to determine the velocity, 4 sparse GNSS campaigns were carried out from 1995 to 2010. Considering this small rate of deformation, loading phenomena can contribute a non-negligible artifact to the velocity computation that could affect our geodynamical interpretation. In this investigation, we specifically considered the atmospheric, hydrological, and non-tidal ocean loading phenomena. The computed loading deformations for this region show the horizontal displacements are dominated by the non-tidal ocean loading (maximum 4 mm for the North and 3.1 mm for the East components); the main vertical contributions are due to the atmospheric and continental water storage loading (maximum 14.3 for the atmosphere and 8.1 mm for the hydrology, respectively). We have found that the dominant loading effect on the horizontal velocity is the non-tidal ocean loading (mean of 0.11 mm/yr), whereas the vertical component is dominated by the hydrological loading (mean of 0.21 mm/yr). Since the study area is in a mountainous region, we also analyzed the difference between the atmospheric and the topography dependent atmospheric loading models at our GNSS campaign sites. We did not find any significant difference between the two atmospheric loading models in terms of horizontal velocity. Finally, we performed simulations to identify the optimum timing and frequency of future GNSS campaigns in this area that would minimize the loading effects on tectonic velocity estimates.
ISSN: 0039-3169

hal-00963629
https://hal.archives-ouvertes.fr/hal-00963629
DOI : 10.1007/s11200-012-0458-2

Éditeur(s) : Inter-Research
Résumé : The species richness pattern of groundfish species in the entire northern Mediterranean Sea was examined at 3 spatial scales: region, large biogeographical zone and basin. We analysed 1914 trawl hauls collected using a single sampling design in the trawlable areas of the continental shelves between the Strait of Gibraltar and the Strait of Dardanelles (from 36.3 to 45.7 degrees N and 5.3 degrees W to 28 E). Spatial pattern in species diversity was assessed using complementary methods (Chao2 estimates of total species richness, mean species richness and beta diversity). No matter which scale was used, the expected longitudinally decreasing trend in species richness, which has been widely described in previous studies, did not appear when comparing estimates of total species richness per unit of area. Only the mean species richness pattern showed a moderate eastwards decrease at the largest spatial scale, but the trend progressively disappeared as the scale of analysis was reduced. In contrast to what is usually expected, our results suggest that Atlantic inflow does not play a key role in the present spatial pattern of fish species richness within the northern Mediterranean Sea. Furthermore, we show that the Aegean Sea can no longer be considered the least species-diverse zone in the northern Mediterranean Sea. Our results provide the first description of a quantitative 'reference state', with which the temporal changes in species richness patterns throughout the entire northern Mediterranean Sea can be compared in the future.
Marine Ecology Progress Series (0171-8630) (Inter-Research), 2007-07 , Vol. 341 , P. 191-203

Droits : 2007 Inter-Research
http://archimer.ifremer.fr/doc/2007/publication-3569.pdf
DOI:10.3354/meps341191
http://archimer.ifremer.fr/doc/00000/3569/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Certaines villes corses comme Bastia, Bonifacio, Calvi ou Corte possèdent des centres anciens enchâssés dans des ouvrages d’art militaire, aux fonctions défensives à l’origine : les citadelles. Cet article invite à interroger le patrimoine des citadelles urbaines insulaires, non pas en lui-même, mais en tant qu’objet de construction sociale et symbolique pris dans des processus de patrimonialisation qui engagent diverses logiques d’actions et modalités d’interventions, différents acteurs et usages. C’est donc cette pluralité instable des usages et des représentations du patrimonial qui a été privilégiée pour appréhender les enjeux sociaux, culturels, politiques et symboliques liés localement à ces processus. Cette communication s’appuie en particulier d’éléments extraits d’une enquête de terrain réalisée à Calvi, dans la microrégion de Balagne située dans l’ouest de la Corse.
Some Corsican cities like Bastia, Bonifacio, Calvi or Corte have old centers enshrined in military engineering works build originally for defensive functions: the citadels. This article invited to question the patrimony of insular urban citadels not for itself, but like the object of social and symbolic system, taken in patrimonialization process who engaged various logics of actions and conditions of operations, many actors and uses. So, it’s this unstable pluralism of patrimonial uses and representations that had been prioritized to grasp the social, cultural, politic and symbolic stakes bounded locally at these processes. This paper is based on field’s works realized in Calvi, in Balagna area, located in west Corsica.
Corse

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6714
http://journals.openedition.org/etudescaribeennes/6714

Résumé : This paper calls back the needs of cartography of the interface between lands and sea and assesses the characteristics of this interface in terms of knowledge as spatial and temporal constraints. After a brief typology of the different thematic cartographies of coasts and their applications we develop the contribution of the digital high resolution satellite image and we lean on an example (inventory of aquaculture sites in inter-tropical zone) which meets the three basic needs of localization, quantification and economic planning.
On rappelle les besoins de cartographie de l’interface entre terres et mers et on fait un bilan des caractéristiques de cette interface en termes de connaissances, de contraintes spatiales et temporelles. Après une typologie succincte de la cartographie des littoraux et de leurs applications on développe l‘apport de l’image numérique satellite de haute résolution et on s’appuie sur un exemple (celui de la présélection de sites aquacoles en zone intertropicale) qui répond aux trois besoins fondamentaux besoins de localisation, de quantification (inventaire) et de planification (prévision).

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00189/29991/28439.pdf
http://archimer.ifremer.fr/doc/00189/29991/

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The effects of biodiversity on the transmission of infectious diseases now stand as a cornerstone of many public health policies. The upper Amazonia and Guyana shield are hot-spots of biodiversity that offer genuine opportunities to explore the relationship between the risk of transmission of Chagas disease and the diversity of its triatomine vectors. Over 730 triato-mines were light-trapped in four geomorphological landscapes shaping French-Guiana, and we determined their taxonomic status and infection by Trypanosoma cruzi. We used a model selection approach to unravel the spatial and temporal variations in species abundance , diversity and infection. The vector community in French-Guiana is typically made of one key species (Panstrongylus geniculatus) that is more abundant than three secondary species combined (Rhodnius pictipes, Panstrongylus lignarius and Eratyrus mucronatus), and four other species that complete the assemblage. Although the overall abundance of adult triatomines does not vary across French-Guiana, their diversity increases along a coastal-inland gradient. These variations unravelled a non-monotonic relationship between vector biodiversity and the risk of transmission of Chagas disease, so that intermediate biodiversity levels are associated with the lowest risks. We also observed biannual variations in triatomine abundance, representing the first report of a biannual pattern in the risk of Cha-gas disease transmission. Those variations were highly and negatively correlated with the average monthly rainfall. We discuss the implications of these patterns for the transmission of T. cruzi by assemblages of triatomine species, and for the dual challenge of controlling Amazonian vector communities that are made of both highly diverse and mostly intrusive species.
ISSN: 1935-2727

Droits : http://creativecommons.org/licenses/by/
hal-01298091
https://hal-univ-perp.archives-ouvertes.fr/hal-01298091
https://hal-univ-perp.archives-ouvertes.fr/hal-01298091/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01298091/file/journal.pntd.0004427.PDF
DOI : 10.1371/journal.pntd.0004427

Résumé : Preliminary analysis of the impact of an environmental change on ichtyologic fauna marinates and fishing in Guyanese water enter within the framework of the program CHALOUPE (dynamic Change of the exploited marine biodiversity and the viability of the Fisheries) coordinated by Ifremer Cayenne and financed by the ANR (National Agency of Research). The study focuses on: -analysis temporal variations of various environmental parameters (sea surface temperature and salinity, the phenomenon El Niño) -fish physical characteristics (tolerances of temperature and salinity, maximum height, distribution…) - analysis of the unloadings per unit of effort of the inshore fishing and an economic analysis of the selling price of fish Data are found on data bases and are given by scientists. The statistical studies and the cartographic representations show that there is an increase in temperature of water in Guiana since the end of the Nineties. The model AquaMaps® simulates the potential consequences of this reheating on the fish distribution. Certain stocks of fishing are weakened. For the moment, if the composition of the captures of inshore fishing changes, that seems more due to a change of fishing strategy than due to an impact of the climatic change. In addition, the average value of the capture increased for reason commercial.
Les analyses de l’impact d’un changement environnemental sur la faune ichtyologique marine et la pêche dans les eaux guyanaises entrent dans le cadre du programme CHALOUPE (CHAngement gLObal, dynamiqUe de la biodiversité marine exploitée et de la viabilité des Pêcheries) coordonné par l’Ifremer Cayenne et financé par l’ANR (Agence Nationale de la Recherche). L’étude porte sur : -l’analyse des variations temporelles de différents paramètres environnementaux (température et salinité de surface des eaux, le phénomène El Niño) à l’échelle de quelques décennies -les caractéristiques physiques des poissons (tolérances de températures et de salinité (taille maximum, répartition…) ; -l’analyse des débarquements par unité d’effort de la pêche côtière depuis les années 70 ; -une analyse économique de la pêche ; Les données sont récoltées à partir de bases de données et au près de différents chercheurs. Les études statistiques et les représentations cartographiques démontrent qu’il y a bien une augmentation de température des eaux en Guyane depuis la fin des années 90. Le modèle statistique sous AquaMaps® permet de simuler les conséquences potentielles de ce réchauffement sur la répartition des poissons. Dans un tel contexte, certains stocks de pêche sont fragilisés. Pour le moment, si la composition des captures de la pêche côtière se modifie dans le même temps, cela semble plus du fait de changement de stratégie de pêche que du fait de l’impact du changement climatique. Par ailleurs, la valeur moyenne de la capture a augmenté pour des raisons commerciales.

Droits : 2006 Ifremer
http://archimer.ifremer.fr/doc/00077/18855/16429.pdf
http://archimer.ifremer.fr/doc/00077/18855/