Éditeur(s) : Gauthier-Villars
Résumé : An experimental techniques to estimate the influence of dissolved organic matter (DOM) on remote sensing of chlorophyll in water has been developed, based on the relationship between fluorescence and absorption of light by a substance. The profiles of fluorescence, chlorophyll content in sea water and estimates of light attenuation in water samples were used in the paper. These data have permitted to calculate the regressions linking fluorescence and light absorption at 450 nm by chlorophyll (ABC450) and by DOM (ABD450). The remote sensing needs no correction for DOM if M450 = 100* (ABC450/ABD450) much greater than 100. This technique has been applied to data collected during the international Skagex field experiment in the straits of Skagerrak and Kattegat in spring and autumn of 1990. It was found that M450 <= 100 everywhere in the subsurface layer. Unfavorable conditions for remote sensing of chlorophyll prevailed in the straits because of the uptake of DOM-rich water from the continent and the accumulation of phytoplankton in deeper layers. These and another processes can increase relative content of colored DOM even in waters of open ocean.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1992 , Vol. 15 , N. 3 , P. 255-259

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00100/21159/18778.pdf
http://archimer.ifremer.fr/doc/00100/21159/

Éditeur(s) : Elsevier
Résumé : Red drum larvae were fed from day 11 to day 24 post-hatch, with Artemia (LP group) or two isoproteinic-formulated diets with varying lipid levels, 15% (L15 group) and 30% (L30 group). The lipid fraction was composed of a mixture of cod liver oil and soy lecithin. Larvae fed Artemia exhibited the greatest length, L30 diet induced a larvae length significantly greater than that obtained with L15 diet (P < 0,05). No difference was observed in larvae survival among the three dietary groups. The increase in dietary lipid concentration led to an increase in amylase and trypsin secretion levels in 24-day-old larvae. The pancreatic secretion level measured in L30 group was close to that of LP group, suggesting that the maturation of the pancreatic functions was normally developed. Red drum larvae fed the diet containing the higher lipid content (L30) exhibited a more developed brush border membrane digestion in the intestine than larvae fed L15 diet (P < 0.05). Phospholipase A2 was stimulated by the increase of phospholipids in the diet, but no difference was observed for lipase between the two compound diet-fed groups; the LP group exhibited the lowest lipase activity. A plateau in lipase activity may have occurred in red drum larvae from 15% fat level in the diet, suggesting that the maximal lipase activity was reached with 12% neutral lipid in the diet. The positive effects observed with high dietary fat may be due to the phospholipid fraction of the lipid mixture used.
Aquaculture (0044-8486) (Elsevier), 2000-04 , Vol. 184 , N. 3-4 , P. 339-347

Droits : 2000 Elsevier
http://archimer.ifremer.fr/doc/2000/publication-503.pdf
DOI:10.1016/S0044-8486(99)00325-7
http://archimer.ifremer.fr/doc/00000/503/

Éditeur(s) : Springer
Résumé : The distribution of summer phytoplankton across the Straits of Magellan (SOM) was studied with the aims of tracing differences among the distinct subregions of the area and contributing to the knowledge of its biodiversity. Samples collected at 25 stations were observed and counted in light microscopy. Selected samples were observed with transmission electron microscopy. The main unifying feature of the phytoplankton in the SOM was the high abundance and numerical dominance of small-sized (<10 μm) eukaryotic species, among which coccoid cells of <3 μm size were predominant (56.2 ± 30.6 of the total phytoplankton abundance). They mostly belonged to the prasinophyte Pycnococcus provasolii, which was abundant (0.8–6,834 cells × 103 ml−1) at all stations with the exception of those in proximity to the Atlantic entrances, where it was not recorded. Small-sized (<3 and 3–5 μm) diatoms (Minidiscus trioculatus, Lennoxia faveolata and other undetermined centric species) attained high densities (<3,757 cells 103 ml−1) especially at stations of the Patagonian sectors, whereas microplanktonic diatoms were only found at the two entrances of the Straits. Dinoflagellates were constituted mainly by >10 μm forms in the Andean subregion and <10 μm naked species in the Patagonian subregion, contributing up to 75.9 and 41.8% of the total carbon in these two areas, respectively. In the Patagonian subregion, flagellates mainly constituted by <5 μm forms and by cryptomonads <10 μm comprised up to 53.9% of the total biomass. Several species identified in this study have never been reported in other investigations in the SOM, while others, including Pycnococcus provasolii and Lennoxia faveolata, have rarely been recorded elsewhere. Overall, the summer phytoplankton of the Straits does not resemble that of any other region of the world’s seas. Although some of the predominant species might have been overlooked elsewhere, their abundance and relative importance apparently constitute a distinctive feature of the SOM.
Polar Biology (0722-4060) (Springer), 2011 , Vol. 34 , N. 9 , P. 1269-1284

Droits : The Author(s) 2010. This article is published with open access at Springerlink.com
http://archimer.ifremer.fr/doc/00026/13722/10828.pdf
DOI:10.1007/s00300-010-0937-2
http://archimer.ifremer.fr/doc/00026/13722/

Éditeur(s) : Inter-Research
Résumé : The pathogenicity of Vibrio penaeicida Strains KH-1 and AM101, their culture-free supernatant (CFS), and their protein fraction obtained by 40% of ammonium sulfate precipitation (PFs40) were assessed in experimental challenges against juvenile Litopenaeus vannamei. Live Vibrio cells, CFS, and PFs40 from the AM101 strain produced a significantly higher mortality (p < 0.05) compared to the KH-1 strain. Toxicity and median lethal doses (LD50) of Fast Protein Liquid Chromatography (FPLC) products were evaluated on L. vannamei. The first FPLC fraction sample (A) from PFs40 of the AM101 strain displayed LD50 values of 1.68 and 5.61 mu g protein ind.(-1), respectively. The second FPLC process from Fraction A showed a peak (A1) also with toxic effects to shrimp. PFs40, Fraction A, and Peak At showed a 38.5 kDa molecular band (SDS-PAGE), with activity on a gelatin protease zymogram. The lethal effect of PFs40 and Fraction A was inhibited by Proteinase K, CuCl2, E-64, and heat (60 and 100 degrees C) treatments, but was not inhibited by EDTA-Na-2, aprotinin, and soy trypsin treatments. These results and the zymogram inhibition test suggest the presence of a cysteine protease-like proteinaceous exotoxin as a dominant protease, secreted by V. penaeicida Strain AM101.
Diseases of aquatic organisms (0177-5103) (Inter-Research), 2005-11 , Vol. 67 , N. 3 , P. 201-207

Droits : Inter-Research 2005
http://archimer.ifremer.fr/doc/2005/publication-3618.pdf
DOI:10.3354/dao067201
http://archimer.ifremer.fr/doc/00000/3618/

Éditeur(s) : Wiley-blackwell
Résumé : The reef fauna connectivity of the West Indian Ocean (WIO) is one of the least studied globally. Here we use genetic analyses of the grouper Epinephelus merra (Bloch 1793) to determine patterns of connectivity and to identify barriers to dispersal in this WIO marine area. Phylogeographic and population-level analyses were conducted on cytochrome b sequences and microsatellites (13 loci) from 557 individuals sampled in 15 localities distributed across the West Indian Ocean. Additional samples from the Pacific Ocean were used to benchmark the WIO population structure. The high level of divergence revealed between Indian and Pacific localities (of about 4.5% in sequences) might be the signature of the major tectonic and climatic changes operating at the Plio-Pleistocene transition, congruently with numerous examples of Indo-Pacific speciation. In comparison, the E. merra sequences from the Indian Ocean constitute a monophyletic clade with a low average genetic distance (d < 0.5%). However both genetic markers indicated some structure within this ocean. The main structure revealed was the isolation of the Maldives from the WIO localities (a different group signature identified by clustering analysis, great values of differentiation). Both marker types reveal further significant structure within the WIO, mainly the isolation of the Mascarene Islands (significant AMOVA and isolation-by-distance patterns) and some patchy structure between the northernmost localities and within the Mozambique Channel. The WIO genetic structure of E. merra appeared congruent with main biogeographic boundaries and oceanographic currents.
Marine Ecology-an Evolutionary Perspective (0173-9565) (Wiley-blackwell), 2015-09 , Vol. 36 , N. 3 , P. 447-461

Droits : 2014 Blackwell Verlag GmbH
http://archimer.ifremer.fr/doc/00189/30046/28566.pdf
DOI:10.1111/maec.12153
http://archimer.ifremer.fr/doc/00189/30046/

Éditeur(s) : Elsevier
Résumé : The gametogenic cycle and the reproductive effort of the blacklip pearl oyster, Pinctada margaritifera, cultivated in Takapoto lagoon were studied for a 1-year period (March 1997-April 1998) by bimonthly observations of gonadal sections, dry tissue weights and gonadal index in a population of pearl oyster composed of three age-groups. pearl oysters attained sexual maturity in the end of their first year (height approximate to 40 mm), implying that P. margaritifera is a late-maturing species in comparison with other Pteriidae. This species was also confirmed to be a marked protandrous successive hermaphrodite in culture, with 100 % of males at first maturity and 75 % in older pearl oyster (height > 120 mm). The general pattern of gametogenic activity, fairly synchronous in both sexes, was comparable with that of other tropical bivalves: reproduction occurs continuously throughout the year with a maximal activity during the warm season (November-May). No resting period was observed. Quantitative growth data showed that P. margaritifera exhibits an annual synchronised polymodal spawning pattern, with two spawning peaks in age-group I (height approximate to 70 mm) and five in age-groups II (height approximate to 100 mm) and III (height approximate to 120 mm). Spawning was sometimes incomplete, nevertheless a clear relationship between gamete production (P-R, g) and size (height H, mm) was obtained: P-R = 5.26 x 10(-7) H-2.91 (R-2 = 0.99, p < 0.05). Estimation of P-R was used to calculate the annual reproductive effort in P. margaritifera. Reproductive effort (%) was similar to those calculated for temperate species and showed a progressive increase with the age of pearl oyster, from 7 % in age-group I to 38 % in age-group III. This study showed that, in a fairly stable tropical environment such as the Takapoto lagoon, P. margaritifera is a multiple spawner, which uses an opportunistic reproductive strategy, allowing investment all year around, of any surplus energy into gamete production. Surplus energy is ensured by the high pumping rates developed by this non-symbiotic bivalve to succeed in low seston conditions. (C) 2000 Ifremer/Cnrs/Inra/Ird/Cemagref/Editions scientifiques et medicales Elsevier SAS.
Le cycle et l'effort de reproduction de l'huître perlière à lèvres noires, Pinctada margaritifera, cultivée dans le lagon de Takapoto, ont été étudiés sur une période annuelle (de mars 1997 à avril 1998), par un suivi bimensuel des stades de maturation et des indices gonadiques, sur une population en élevage composée de trois groupes d'âge (1, 2 et 3 ans). Cette étude a confirmé que P. margaritifera est une espèce qui se reproduit tardivement par rapport aux autres Ptériidés (elle atteint sa maturité sexuelle à la fin de sa première année, pour une hauteur approximative de 40 mm). Par ailleurs, elle présente, en élevage, une protandrie marquée (100 % de mâles à première maturité, 75 % pour des huîtres âgées de trois ans). Le schéma général de sa gamétogenèse, relativement synchrone dans les deux sexes, est comparable à celui des autres bivalves tropicaux : la reproduction est quasiment continue (aucune période de repos sexuel) avec une activité accrue en saison chaude (de novembre à mai). L'analyse des variations du poids de la gonade suggère l'existence de deux pics d'émission de gamètes chez les huîtres de un an et cinq pics chez les huîtres de 2 et 3 ans (cycle de reproduction de type polymodal). Bien que ces émissions de gamètes soient parfois incomplètes, une relation entre la production de gamètes (PR, en g) et la taille de l'huître perlière (hauteur, H, en mm) a été établie : PR = 5,26 x 10-7 H2,91 (R2 = 0,99, p < 0,05). Ces résultats ont permis de calculer l'effort de reproduction de P. margaritifera à Takapoto et sur un bilan annuel : il augmente avec l'âge de l'huître perlière de 7 % pour le groupe d'âge I à 38% pour le groupe d'âge III. Ces valeurs annuelles sont similaires à celles calculées chez les bivalves de milieux tempérés. Cette étude a donc montré que, dans un environnement tropical assez stable tel que celui du lagon de Takapoto, P. margaritifera présente une reproduction continue, avec plusieurs pics d'émission de gamètes par an. Cette stratégie « opportuniste » permet l'investissement, de tout surplus d'énergie en production de gamètes, tout au long de l'année. Malgré la faible concentration du milieu en nourriture, ces surplus d'énergie sont assurés par les fortes capacités de filtration développées par cette espèce tropicale non-symbiotique.
Aquatic Living Resources (0990-7440) (Elsevier), 2000 , Vol. 13 , N. 1 , P. 37-48

Droits : 2000 Ifremer/Cnrs/Inra/Ird/Cemagref/Éditions scientifiques et médicales Elsevier SAS
http://archimer.ifremer.fr/doc/2000/publication-1391.pdf
DOI:10.1016/S0990-7440(00)00135-2
http://archimer.ifremer.fr/doc/00000/1391/

Éditeur(s) : Elsevier Science Bv
Résumé : Recent oceanographic surveys revealed the existence of five volcaniclastic deep-sea fans off La Reunion Island. The Cilaos fan is a large volcaniclastic submarine fan, connected to rivers that episodically experience torrential floods through a narrow and steep shelf-slope system. New piston cores presented in this study together with echosounder profiles give new insight into the evolution, of this extensive and sand-rich turbidite system. The Cilaos fan extends over 15,000 km(2) on an abyssal plain and is compartmentalized by topographic highs. Located southwest of the island, the sedimentary system consists of a canyon area and a deep sea fan divided into a proximal and a distal fan. The proximal fan is characterized by its wide extent and coarse-grained turbidites. The distal fan is characterized by elongated structures and fine-grained turbidites. A detailed morphological study of the fan which includes the analysis of swath bathymetry, backscatter, echosounder, and piston core data shows that the Cilaos fan is a complex volcaniclastic deep-sea fan, highly influenced by preexisting seafloor irregularities. The canyons and the slope area show a complex and evolving sediment feeding system with a direct sediment input by the river and irregular sediment supply by submarine landslide. Three main construction stages are identified for this system: (1) an old incision phase of the channels forming wide turbidites extending over the entire distal fan; (2) a period of no or low activity characterized by a thick layer of hemipelagic mud; and (3) a local reactivation of the channel in the proximal fan. Each stage seems to be linked to a different sediment source with a progressively increasing contribution of hemipelagic sediment and mud in younger stages. (C) 2011 Elsevier B.V. All rights reserved.
Marine Geology (0025-3227) (Elsevier Science Bv), 2011-10 , Vol. 288 , N. 1-4 , P. 1-17

Droits : 2011 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00056/16704/14203.pdf
DOI:10.1016/j.margeo.2011.06.011
http://archimer.ifremer.fr/doc/00056/16704/

Éditeur(s) : Gauthier-villars
Résumé : The new bathymetric, magnetic and mainly seismic data acquired during the Zoesis cruise, reveal the presence of compressional features in the ''Fairway Ridge-Fairway Basin-Lord Howe Rise (northern part)'' area, west of New Caledonia. The compressive strain is especially responsible for the formation of the Fairway Ridge. The compression is emphasized by a regional unconformity that could be dated late Eocene, according to DSDP data in the area, and therefore synchronous with the late Eocene obduction of the New Caledonia ophiolites. The westward extension of the late Eocene compressive strain in the New Caledonia area is more developed than previously thought.
De nouvelles données bathymétriques, magnétiques et principalement de sismique réflexion, recueillies durant la campagne Zoesis, révèlent l'existence de figures compressives à l'ouest de la Nouvelle-Calédonie, a travers l'ensemble <( ride de Fairway - bassin de Fairway - partie nord de la ride de Lord Howe D. La tectonique compressive, en particulier responsable de la formation de la ride de Fairway, est soulignée par une discordance régionale qui, compte tenu des données de forages DSDP sur la région, serait d'âge Eocene supérieur et donc synchrone du charriage de la nappe ophiolitique sur le bâti Calédon&. Les effets de I'épisode compressif fini-éocène qui affecte la Nouvelle-Calédonie sont ressentis bien plus à l'Ouest que précédemment supposé.
Comptes Rendus de l'Academie des Sciences Serie II (1251-8069) (Gauthier-villars), 1994-11 , Vol. 319 , N. 9 , P. 1063-1069

Droits : Académie des Sciences
http://archimer.ifremer.fr/doc/00183/29457/27888.pdf
http://archimer.ifremer.fr/doc/00183/29457/

Éditeur(s) : Elsevier
Résumé : The accumulation of nine heavy metals in fine-grained sediments from the mangrove fringed coast of French Guiana is evaluated. The dynamic features of the South American tropical coastline, from the Amazon to the Orinoco Rivers, result in mangrove sediments being alternately submitted to phases of erosion and net sedimentation a few tens of years long. This process influences the distribution of the heavy metals associated with these frequently re-mobilized deposits. Sedimentary cores and mangrove plant samples were collected, at different seasons, in various swamps characterized by different properties (content of sedimentary organic matter, distance from sea water and fresh water). The ranges of measured concentrations expressed in mu mol g(-1) were the following: Cu (0.06 to 0.61), Co (0.12 to 0.68), Pb (0.08 to 0.18), Ni (0.32 to 0.76), Cr (0.61 to 1.40), Zn (1.25 to 5.94), Mn (4.36 to 45.4) and Fe (441 to 1128). No differences were found between sediments from mangroves developing upstream and downstream of urban areas, i.e. Cayenne and Kourou. This suggests that the content of mangrove sediments in heavy metals along the coastline of French Guiana is essentially the result of the continuous alternation of accumulation and transport phases occurring upstream after departing from the Amazon watershed. The sources of this heavy metals content are thus difficult to identify. However it is well known that the alluvium produced by the natural erosion of the Amazonian soils is naturally enriched in mercury. Also, the run-off from gold mining activities is known to contribute to mercury pollution. Ranges in total Hg were between 0.15 and 2.57 nmol g(-1), with mean values close to 0.41 nmol g(-1), and were clearly correlated with total organic carbon except for some outstanding high values, which may be a result of rapid geochemical changes. Heavy metal concentrations showed variations with depth. The redox conditions and the decay processes affecting the organic matter control the cycling of iron and manganese, which in turn control the concentrations and associations of heavy metals. These preliminary results suggest that the variations in heavy metal content with depth or between mangrove areas result largely from diagenetic processes rather than changes in metal input resulting from local human activities. (c) 2005 Elsevier B.V. All rights reserved.
Marine Chemistry (0304-4203) (Elsevier), 2006 , Vol. 98 , N. 1 , P. 1-17

Droits : 2005 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2006/publication-1041.pdf
DOI:10.1016/j.marchem.2005.06.001
http://archimer.ifremer.fr/doc/00000/1041/

Éditeur(s) : Gauthier-Villars
Résumé : Mud fields located In the inner part of shelves in front of large estuaries are preferential environments for the investigation of the mechanisms and evolution in time of the supply of such sedimentary bodies. The study of different constituents of the particulate organic matter trapped in the sediments of the West Gironde mud patch contributes to the knowledge of the input origins. This study was carried out with different techniques, including pyrolysis-gas chromatography-mass spectrometry and high performance liquid chromatography, on samples from a core collected in the centre of the mud field. At the bottom of the core, the increase of sugars, amino-sugars and some aromatic hydrocarbons may indicate a more marine character of organic components. The same appears to be the case at the top of the core, where, despite a finer sedimentation, biochemical characteristics could show a more pronounced marine influence than in the middle part. In the middle part of the core, on the other hand, the increase in phenols could result from an increase in lignin-derived. terrestrial inputs. The increase in pyrolysis-derived cyclopentenone may indicate the same terrestrial influence, because this component has its origin in aliphatic polycarboxylic acids resulting from sail leaching. The continental character of the sedimentation is also reflected in the increase of the silt-clay fractions representative of suspended matter originating in the Gironde estuary, associated with a slight carbonate decrease. The taxonomic significance of some phenols is noteworthy: this is especially the case of the cinnamyls which, in the middle part of the core, emphasize the input of herbaceous debris and of the hydroxybenzyls which, at the bottom, provide evidence of the algal origin of part of the organic material. Thus, by means of pyrolysis results and HPLC phenol analysis, it is possible to establish the more or less continental signature of organic components trapped in the ''Ouest-Gironde'' mud patch. This study of organic matter, which confirms earlier sedimentological and micropaleontological data, constitutes a new approach, adapted to the identification of the origin of carbon sources.
Oceanolica Acta (0399-1784) (Gauthier-Villars), 1997 , Vol. 20 , N. 5 , P. 687-695

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00093/20426/18093.pdf
http://archimer.ifremer.fr/doc/00093/20426/

Éditeur(s) : Wiley-blackwell Publishing, Inc
Résumé : We present the results from processing and interpreting five lines from the 1992 Erable multichannel seismic reflection experiment extending from the southeastern margin of Flemish Cap into the northern Newfoundland Basin. These profiles reveal significant along strike variations in the rifting styles experienced by Flemish Cap. In the southwest, a 100-km-wide transition zone is identified between thinned continental crust and thin oceanic crust. Similar to the conjugate Galicia Bank and Iberian margins, this transition zone contains a section of deep basement adjacent to a series of shallower ridges and is interpreted as exhumed serpentinized mantle. Along strike towards the northeast, this transition zone pinches out completely within 100 km and is replaced by thin oceanic crust directly adjacent to thinned continental crust. By interpreting nearby seismic profiles and profiles on the conjugate margins using the same classification criteria, we construct regional maps of the distribution of crustal domains on both sides of the North Atlantic. These maps reveal significant variations in rifting style on the conjugate margins and along strike of each margin and also highlight the role of ancient transfer zones in compartmentalizing these rifting variations into four distinct regions. We propose that the limited localization of shallow topographically high serpentinized peridotite ridges on the Newfoundland-Iberia and Flemish Cap-Galicia Bank conjugate margins, was directly related to an increase in the rate of extension following the separation of Flemish Cap and Galicia Bank which exhumed deeper, less serpentinized mantle.
Geophysical Journal International (0956-540X) (Wiley-blackwell Publishing, Inc), 2010-03 , Vol. 180 , N. 3 , P. 976-U4

Droits : 2010 RAS
http://archimer.ifremer.fr/doc/00001/11202/7876.pdf
DOI:10.1111/j.1365-246X.2009.04477.x
http://archimer.ifremer.fr/doc/00001/11202/

Éditeur(s) : Academic Press Ltd- Elsevier Science Ltd
Résumé : Extracellular products (ECPs) of the pathogenic Vibrio aestuarianus 01/32 were previously reported to display lethality in Crassostrea gigas oysters and to cause morphological changes and immunosuppression in oyster hemocytes. To identify the source of this toxicity, biochemical and genetic approaches were developed. ECP protease activity and lethality were shown to be significantly reduced following incubation with metal chelators, suggesting the involvement of a zinc metalloprotease. An open reading frame of 1836 bp encoding a 611-aa metalloprotease (designated yam) was identified. The deduced protein sequence showed high homology to other Vibrio metalloproteases reported to be involved in pathogenicity. To further confirm the role of this enzyme in ECP toxicity, a plasmid carrying the yarn gene under the control of an araC-P-BAD expression cassette was transferred to a Vibrio splendidus related strain, LMC20012(T), previously characterized as non-pathogenic to oysters. Expression of Vam conferred a toxic phenotype to LMG20012(T) ECPs in vivo and cytotoxicity to oyster hemocytes in vitro. Collectively, these data suggest that the Vam metalloprotease is a major contributor to the toxicity induced by V aestuarianus ECPs and is involved in the impairment of oyster hemocyte functions. (C) 2010 Elsevier Ltd. All rights reserved.
Fish & Shellfish Immunology (1050-4648) (Academic Press Ltd- Elsevier Science Ltd), 2010-11 , Vol. 29 , N. 5 , P. 753-758

Droits : 2010 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00015/12649/9588.pdf
DOI:10.1016/j.fsi.2010.07.007
http://archimer.ifremer.fr/doc/00015/12649/

Résumé : Cet atlas de sensibilité du littoral aux pollutions marines a été produit dans le cadre du projet "Elaboration des Atlas Polmar et DCE" confié par l'Etat (DEAL - La Réunion) au laboratoire universitaire LETG-Brest Géomer de Brest en lien avec la délégation IFREMER océan Indien. Le dispositif spécifique Polmar constitue un volet spécifique du dispositif opérationnel ORSEC départemental. Théoriquement révisé tous les cinq ans, il doit notamment fournir "un inventaire précis et hiérarchisé des zones à protéger en priorité". Etabli sous la forme d'un atlas de sensibilité des littoraux, annexe obligatoire du dispositif spécifique Polmar-Terre, cet inventaire est un document synthétique d'aide à la décision dans le contexte préparatoire et opérationnel de la lutte anti-pollution. L'opération confiée au laboratoire LETG-Brest Géomer, s'est organisée en 3 phases : •Phase 1 : Inventaire des données pertinentes pour produire l’atlas de sensibilité. Cette étape a consisté tout particulièrement à rassembler et à exploiter l’information géographique produite et diffusée par les services de l’Etat et par ses partenaires dans le cadre de leurs missions sur le littoral. Des données complémentaires ont également été recherchées dans la documentation ou sur le terrain. L'inventaire reprend la méthodologie développée pour la production des atlas de Haute et de Basse Normandie dans le cadre de la MIMEL. Pour chaque jeu de données, le travail a consisté à identifier les sources (propriétaires et contacts), les formats, les modalités d'acquisition, de diffusion et de mise à jour. Les données disponibles ont ensuite été collectées et structurées conformément aux principes d'archivages et de catalogages normalisés par la directive européenne INSPIRE pour les infrastructures de données. •Phase 2 : Structuration de l’information géographique. L’ensemble des données et des informations exploitées ou produites a été intégré dans le serveur de cartographie SEXTANT et ainsi mis à disposition de l'ensemble des partenaires, afin d'améliorer l'approche globale et partagée des milieux marins et littoraux. Le SIG créé permettra de garantir une mise à jour en continu de l'atlas de l'île de La Réunion. Sa pérennité nécessitera cependant une démarche partenariale et la mise en oeuvre d'un suivi. •Phase 3 : Exploitation de l’information géographique pour produire l’atlas de sensibilité du littoral réunionnais. L’atlas de sensibilité a été produit dans un format numérique accessible à partir de la Base de Données SEXTANT Remata de l'Ifremer. A terme, il sera intégré au serveur de cartographie CARMEN permettant d’accéder aux données employées pour la production des atlas afin de pouvoir éditer à la demande des cartes au contenu et à l’échelle personnalisés. L’intérêt de cette version numérique réside également dans sa capacité de diffusion largement accrue. Une version PDF de l’atlas et son édition papier ont également été préparées. Une déclinaison numérique sur un portail Sextant dédié (http://www.ifremer.fr/sextant/fr/web/POLMAR_REUNION) a été développé par la Délégation Ifremer Océan Indien. L'intérêt majeure de cette version WEB et de garantir une réactualisation immédiate des cartes de l'ATLAS dès qu'une mise à jour de données sera effective sur Sextant.

Droits : 2012 Ifremer, DEAL La Réunion - Direction de l'Environnement, de l'Aménagement et du Logement, IUEM, UBO
http://archimer.ifremer.fr/doc/00144/25479/23632.pdf
http://archimer.ifremer.fr/doc/00144/25479/

Éditeur(s) : Elsevier
Résumé : During the SEDIFAN 1 cruise we surveyed the bathymetry and the acoustic properties of the surface sediment of the Celtic Deep Sea Fan. We also collected Kullenberg cores in order to study recent sedimentary processes. From the bathymetry survey it is relatively easy to recognize the main areas of modern fan. The upper fan included a large sedimentary ridge which constitutes the right levee of the prominent meandering Whittard valley. After its confluence with the Shamrock valley the course of the Whittard valley is abruptly deflected to the south. At a short distance to the south the valley divides into two upper-fan channels, the Celtic channel to the west being the deeper one. This point constitutes the centre of a radiating pattern which is developed on a 150 degrees quadrant and a radius of about 100 km. The acoustic imagery displays contrasted features, related to change in lithology within the first metre beneath the sea bottom and to the sea floor roughness. The Austell ridge exhibits a contrasted pattern of elongated areas with high and low acoustic backscattering levels. This pattern is related to the development of abyssal dunes, the amplitude of which is of metric order. Particularly remarkable is a lobe-shaped low back-scattering area in the western part of the middle fan, also noteworthy are a lineated facies to the west and a braided facies to the east of the fan. The laminated silty-clayey sequences deposited on the Whittard ridge and on the Trevelyan levee were deposited during the deglaciation. We interpret these as turbidity currents overflow deposits from the Whittard valley. At the end of isotopic stage 3 and during stage 2, the English Channel was a large plain flooded by the Channel River. During this period a broad delta developed at 100 m below the present-day depth and a wide spectrum of material was bound to be supplied to the deep sea and contributed particularly to the deposition of the Whittard ridge silty-clayey sequences. The stage 2 deposits are characterized by rhythmic levels enriched in monosulfides. These types of deposits are common in areas affected by fluvial discharges. Excluding the sedimentary ridge and the channel levees the surface deposits sampled with the Kullenberg corer are sandy. These sands are deposited in various contexts on the interfluve between the western and eastern channels and at channel mouths. They were emplaced during high sea level stands as a result of high energy gravity processes. The precise sources of these sands have not yet been identified, however benthic foraminifers from included ooze pebbles have living depths of between 500 and 1 000 m. The gravity processes which eroded this marry ooze may have been triggered on the upper slope. The Celtic shelf is presently a high energy platform where the conjunction of storms and spring tides call lead to enhanced sediment transport from near-shore to the deep sea. The relict or palimpsest deposits of the glacial delta also constitute a large reservoir of sandy material which can also be subject to reworking.
Le programme Enam 2 (European North Atlantic Margin) concerne l'étude des processus sédimentaires quaternaires du Spitzberg au golfe de Gascogne. Dans le cadre de ce programme, la reconnaissance de l'Éventail profond celtique était l'objectif de la campagne Sedifan 1 au cours de laquelle nous avons établi la morphologie de l'éventail et obtenu une image acoustique des fonds sédimentaires. La morphologie permet de mettre en évidence une organisation en éventail. On note aussi le développement remarquable d'une ride sédimentaire au niveau de l'éventail supérieur. Les sédiments prélevés révèlent la présence de dépôts sableux, témoins d'une activité récente qui pourrait être liée à l'importance de l'hydrodynamisme sur les Grands Bancs de la plate-forme celtique.
Oceanologica Acta (0399-1784) (Elsevier), 2000 , Vol. 23 , N. 1 , P. 109-116

Droits : 2000 Ifremer/CNRS/IRD/Editions scientifiques et medicales Elsevier SAS
http://archimer.ifremer.fr/doc/2000/publication-525.pdf
DOI:10.1016/S0399-1784(00)00116-X
http://archimer.ifremer.fr/doc/00000/525/

Éditeur(s) : HAL CCSD
Résumé : The present study addresses the question of increasing need in water supply. One line of research consists in investigating karst aquifers that represent significant water supplies for the areas around the Mediterranean. This work aims at developing a methodology of predictive evaluation of karst distribution and karst thickness within the carbonate massifs. It is based on the study of the Tethysian carbonate platform from the area of Montpellier, South of France. This area underwent a polyphased, complex, tectonic evolution, involving successive karst forming events. The approach is based on the relationships between eustacy and geodynamics, on one hand, and base-level variation recorded within palaeokarsts, on the other hand. Sedimentary fill of palaeokarsts allows to identify distinct karstification phases and sometimes to date them. It is a marker of base-level variations, which we attempt to quantify, that is responsible for karst formation and karst filling and sealing. For three palaeokarsts of regional extent, we analyze : karst sedimentary-fill, the distribution along upstream-downstream profile, the vertical extension of palaeokarsts, indicative of the base-level lowering. - The " Bauxite palaeokarst " results from the two-stage evolution of the " Isthme Durancien " : i) Bauxitic weathering of the Neocomian cover over the southern Massif Central , related to an inversion during Barremian ; ii) ≥1600 m uplift and exhumation during Aptian-Albian, inducing erosion of alterites, upstream, and deposition of detrital bauxites, downstream. - The " Early Paleocene palaeokarsts with marine sedimentary-fill " indicate base level variations of more than 350m in the upstream area. It is suggested here that such base-level variations, exceeding eustacy and recorded in tabular undeformed series, result from desiccation-flooding events in an endoreic silled basin. - The " Miocene palaeokarst with Cevennes-sourced sediment-fill " records a Serravalian-Tortonian base-level drop, depicted by canyon incision in the hinterland of the Gulf of Lion Margin. Uplift values of ≥ 400m upstream, about 250m in an intermediate area and 10's of m downstream, are measured. The present 3D geometry and distribution of carbonate massifs (exposed and covered) are modeled in the study area, from the Cevennes to the Mediterranean. The 3D geological model integrates seismic reflection, borehole and gravimetric data. Tectonic restoration of a N-S section, extracted from the 3D model, allows to reconstruct paleo-base-levels with respect with the carbonate massifs, at different stages of deformation and successive phases of karstification. The 3D paleo-flows through carbonates across the study area, are thus constrained, especially during the Messinian desiccation stage. Application of the results to hydrogeology leads to the following : - Uplift of upstream hinterland (Cretaceous, Miocene) produces large amplitude karsts, but they do not make significant reservoirs. - Karstification responsible for the development of important and deep karst reservoirs is related to desiccation of endoreic basins (early Paleocene and Messinian). - Theses two events have produced two main deep karst reservoirs, with a gravimetric signature : (1) Upstream of Montpellier Thrust, between Pic St Loup, Les Matelles Fault and Hérault Basin, a deep karsts developed over 900m thickness in the Malm limestone, during Paleocene. (2) Downstream (south) of Montpellier Thrust, the coastal karsts extend offshore over more than 10km, they are sealed by a thick Miocene to Quaternary cover, and they result from the Messinian event.
Cette étude s'inscrit dans un contexte de demande croissante en ressources en eau, conduisant à mieux contraindre et estimer la distribution des aquifères karstifiés qui représentent une ressource importante, notamment sur le pourtour méditerranéen. Le but de ce travail est d'élaborer une méthode prédictive de la distribution de la karstification et de l'épaisseur de massifs carbonatés karstifiés, notamment pour les karsts profonds. La méthodologie est développée à partir de l'étude des karsts de la plateforme carbonatée téthysienne du Languedoc montpelliérain; région qui a subi une histoire tectonique complexe et polyphasée, entrainant des phases de karstification successives. Elle est basée sur la compréhension des relations entre eustatisme, géodynamique et niveau de base, enregistrées par les paléokarsts de la région. Le remplissage sédimentaire des paléokarsts permet d'identifier les épisodes de karstification et de les dater ; c'est un marqueur des variations -que l'on cherche à quantifier- du niveau de base local responsable de la formation et du comblement des karsts. On analyse 3 paléokarsts d'extension régionale dont on peut étudier : le remplissage karstique, la distribution le long de profils amont-aval et l'extension verticale indicatrice de l'amplitude de l'abaissement du niveau de base dont il est issu. On en déduit les causes géodynamiques à l'origine de leur formation: - Le " paléokarst des bauxites " à remplissage caractéristique, résulte de l'évolution en 2 phases de " l'Isthme Durancien " : altération bauxitique de la couverture néocomienne sur le sud du Massif Central, liée à une inversion au Barrémien, suivi d'une surrection ≥ 1600m à l'Aptien-Albien, causant l'érosion des altérites en amont et le dépôt des bauxites détritiques en aval. - Le " paléokarst à remplissage marin paléocène inférieur " indique des variations du niveau de base local ≥350m dans la zone amont sud-cévenole. On propose que ces variations de niveau de base d'amplitude très supérieures aux variations eustatiques et dans une zone faiblement déformée, résultent d'assèchements et d'ennoiements d'un bassin endoréique à seuil. - Le " paléokarst à remplissage détritique d'origine cévenole ", enregistre la chute du niveau de base au Serravalien-Tortonien, qui se traduit par l'incision de canyons dans l'arrière-pays de la marge du Golfe du Lion. On détermine une surrection de plus de 400 mètres à l'amont, près de 250m dans les blocs faillés intermédiaires et quelques dizaines de mètres dans la zone avale. En parallèle, on établit la géométrie et la distribution actuelles des massifs carbonatés dans la zone d'étude (y compris sous couverture), en construisant un modèle géologique 3D, des Cévennes à la Méditerranée. On intègre les données de sismique réflexion, de forages et les données gravimétriques. La restauration tectonique séquentielle d'une coupe Nord-Sud extraite du modèle géologique permet d'appréhender la position des paléo-niveaux de base par rapport aux massifs carbonatés, pour chaque époque de karstification. On déduit l'organisation 3D des paléo-écoulements à travers la géométrie complexe des massifs carbonatés languedociens, notamment pendant l'évènement messinien. En terme d'évaluation de la ressource en eau, on déduit que: - Les surrections de l'arrière-pays (Crétacé " moyen ", Miocène) produisent des karsts de grande amplitude, mais ne constituent pas de réservoirs significatifs. - La karstification à l'origine de réservoirs exploitables importants et profonds est créée par l'assèchement de bassins endoréiques, qui ont affecté la région au Paléocène inférieur et au Messinien . - Ces deux évènements sont à l'origine de deux principaux réservoirs karstiques profonds qui ont une signature gravimétrique : (1) En amont du chevauchement de Montpellier, entre le Pic Saint Loup, la faille des Matelles et le bassin de l'Hérault, le karst profond se développe sur une épaisseur atteignant 900m, et est attribuée à l'événement du Paléocène. (2) Au Sud du chevauchement de Montpellier les karsts côtiers s'étendent jusqu'à plus de 10 km au large, scellés par une épaisse couverture Miocène et Plio-Quaternaire, et résultent de l'événement Messinien.
https://tel.archives-ouvertes.fr/tel-00936257

tel-00936257
https://tel.archives-ouvertes.fr/tel-00936257
https://tel.archives-ouvertes.fr/tel-00936257/document
https://tel.archives-ouvertes.fr/tel-00936257/file/thA_se_husson_couleurs.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
The aim of this study was to examine the heart rate (HR) response to Olympic windsurfing competition and to check if there was any correlation between racing HR, performance, and the variables measured during laboratory maximal exercise. Ten elite windsurfers [age: 20.93 (3.46) years; height: 178.10 (6.34) cm; body mass: 66.79 (5.90) kg] performed a laboratory maximal oxygen consumption (VO2max) trial and national windsurf competitions wearing a HR monitor. One hundred and forty-three individual races were examined. Racing HR was expressed as a percentage of (1) HRmax (maximal treadmill HR) and (2) HRreserve (HRmax)HRrest). The performance (racing classification: RC, which is inversely proportional to performance) was significantly correlated to the racing HR response in both light wind (LW): LW)RC=)0.12(%HRreserve)+13.03; r=)0.71, r2=0.50, p<0.001, and medium wind (MW): MW)RC=)0.11(%HRreserve)+10.99; r=)0.66, r2=0.43, p<0.001. The results showed similar correlations between performance and %HRmax. Post racing lactate concentration was higher in LW compared to MW [7.14 (0.21) and 5.18 (2.02) mmolÆl)1, respectively]. There was a negative correlation between the highest racing HR (%HRreserve) of each athlete and the second ventilatory threshold expressed as a percentage of VO2max (r=-0.71, p<0.05). To summarize, this study showed that light and medium wind Olympic windsurfing performances are highly dependent on the capacity of the athlete to maintain a high HR for long periods of time. Furthermore, windsurfing is highly dependent on the athlete's physical fitness level as shown by the correlations between racing HRs and laboratory physiological variables.
EUROPEAN JOURNAL OF APPLIED PHYSIOLOGY

hal-00720564
https://hal.univ-antilles.fr/hal-00720564
https://hal.univ-antilles.fr/hal-00720564/document
https://hal.univ-antilles.fr/hal-00720564/file/Chamari_Wind_surf_and_Heart_rat.pdf

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
BACKGROUND: Histoplasmosis is an endemic fungal infection in French Guiana. It is the most common AIDS-defining illness and the leading cause of AIDS-related deaths. Diagnosis is difficult, but in the past 2 decades, it has improved in this French overseas territory which offers an interesting model of Amazonian pathogen ecology. The objectives of the present study were to describe the temporal trends of incidence and mortality indicators for HIV-associated histoplasmosis in French Guiana. METHODS: A retrospective study was conducted to describe early mortality rates observed in persons diagnosed with incident cases of HIV-associated Histoplasma capsulatum var. capsulatum histoplasmosis admitted in one of the three main hospitals in French Guiana between 1992 and 2011. Early mortality was defined by death occurring within 30 days after antifungal treatment initiation. Data were collected on standardized case report forms and analysed using standard statistical methods. RESULTS: There were 124 deaths (45.3%) and 46 early deaths (16.8%) among 274 patients. Three time periods of particular interest were identified: 1992-1997, 1998-2004 and 2005-2011. The two main temporal trends were: the proportion of early deaths among annual incident histoplasmosis cases significantly declined four fold (χ2, p<0.0001) and the number of annual incident histoplasmosis cases increased three fold between 1992-1997 and 1998-2004, and subsequently stabilized. CONCLUSION: From an occasional exotic diagnosis, AIDS-related histoplasmosis became the top AIDS-defining event in French Guiana. This was accompanied by a spectacular decrease of early mortality related to histoplasmosis, consistent with North American reference center mortality rates. The present example testifies that rapid progress could be at reach if awareness increases and leads to clinical and laboratory capacity building in order to diagnose and treat this curable disease.
ISSN: 1935-2727

inserm-01065109
http://www.hal.inserm.fr/inserm-01065109
http://www.hal.inserm.fr/inserm-01065109/document
http://www.hal.inserm.fr/inserm-01065109/file/PLOS_Neglected_Tropical_Dis_2014.pdf
http://www.hal.inserm.fr/inserm-01065109/file/2014_Adenis_-_HIV-associated_histoplasmosis_early_mor.pdf

Éditeur(s) : HAL CCSD American Society for Microbiology
Résumé : International audience
A rapid and specific high-performance liquid chromatography method with UV detection (HPLC-UV) for the simultaneous determination of 12 beta-lactam antibiotics (amoxicillin, cefepime, cefotaxime, ceftazidime, ceftriaxone, cloxacillin, imipenem, meropenem, oxacillin, penicillin G, piperacillin, and ticarcillin) in small samples of human plasma is described. Extraction consisted of protein precipitation by acetonitrile. An Atlantis T3 analytical column with a linear gradient of acetonitrile and a pH 2 phosphoric acid solution was used for separation. Wavelength photodiode array detection was set either at 210 nm, 230 nm, or 298 nm according to the compound. This method is accurate and reproducible (coefficient of variation [CV] < 8%), allowing quantification of beta-lactam plasma levels from 5 to 250 μg/ml without interference with other common drugs. This technique is easy to use in routine therapeutic drug monitoring of beta-lactam antibiotics.
ISSN: 0066-4804

hal-00875271
https://hal.archives-ouvertes.fr/hal-00875271
https://hal.archives-ouvertes.fr/hal-00875271/document
https://hal.archives-ouvertes.fr/hal-00875271/file/Simultaneous_Determination-accepted.pdf
PUBMED : 21788467

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Metasedimentary rocks in the transition zone between the Pernambuco-Alagoas Domain and the Sergipano Belt (southern Borborema Province, NE Brazil) were studied in order to place constraints on the geological evolution of this portion of West Gondwana. High-grade metamorphic conditions are recorded by the garnet-sillimanite assemblage and common anatexis in pelitic paragneisses. Two samples dated by LA-ICP-MS in the north yielded a predominance of early Neoproterozoic detrital zircons, with age peaks between 990 Ma and 827 Ma, with the youngest grain suggesting deposition after 670 Ma. Low Th/U zircons (Th/U < 0.1) in these samples display a significant spread in ages, from 691 to 568 Ma. One sample in the south is dominated by a homogenous population of Paleoproterozoic grains, with a 2200 Ma peak. The southernmost sample also contains Paleoproterozoic zircons but the most abundant population is Neoproterozoic, and characterized by age peaks at c. 670, 647 and 623 Ma. These results show that deposition of sediments in the southern PEAL Domain and in the northern Sergipano Belt occurred in the Late Neoproterozoic. The differing age spectra between samples are correlated with potential source rocks in the study area or in its proximity, reflecting variable input from local sources. The data are interpreted to indicate that during the course of an extensional event at c. 673-647 Ma, Tonian granitic intrusions and synextensional metamorphic rocks were unroofed and eroded to provide zircons for sediments deposited in the north, whereas Paleoproterozoic and synextensional magmatic rocks were the main sources for sediments in the south. Peak metamorphic conditions and contractional deformation are constrained to c. 630-600 Ma.
ISSN: 0895-9811

hal-01468011
https://hal.archives-ouvertes.fr/hal-01468011
DOI : 10.1016/j.jsames.2016.09.010

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We report new data on the geochemical evolution, metasomatic and deformation processes in the lower layers of cratonic lithospheric mantle based on a detailed study of extraordinarily fresh and large deformed peridotite xenoliths from the Udachnaya kimberlite pipe, Siberia. Based on our T-P estimates, the deformed peridotites are localized in a depth range of 170 to 220 km near the base of cratonic mantle. The degree of deformation is not correlated with the depth and equilibration temperatures of the xenoliths. The deformed peridotites are depleted in magmaphile major elements indicating their residual nature, but are enriched in incompatible trace elements, Fe and K. The deformed peridotites experienced a complex evolution, i.e., they were formed initially as high-degree melt extraction residues and later were subjected to three main stages of metasomatic modification. (1) An old, mostly cryptic metasomatism by melt/fluid of carbonatitic composition, which formed garnets with sinusoidal REE patterns (Smn/Ern > 1). (2) Silicate metasomatism, which led to the most significant changes in mineralogical and chemical composition of the deformed peridotites. (3) Fe and Ti metasomatism just before the entrainment of the deformed rocks into kimberlite magma. Enrichment of the peridotites in large-ion lithophile elements (K, Rb, Ba) is related to the formation of kelyphitic rims around garnet. The nature of the metasomatic agent of silicate metasomatism was evaluated from mass-balance of measured and calculated whole-rock compositions, ratios of highly incompatible elements (D < 0.1) and fractional crystallization modeling. All this evidence indicates that the agent of silicate metasomatism had a composition intermediate between that of kimberlites and HIMU OIB. The metasomatic processes responsible for the formation of deformed peridotites and precipitation of megacryst suites cannot be widespread at the base of the cratonic mantle. Rather, they are local features only existing in the cratonic mantle below kimberlite fields and localized along the metasomatic vein system.
ISSN: 0024-4937

hal-00941010
https://hal.archives-ouvertes.fr/hal-00941010
DOI : 10.1016/j.lithos.2012.11.014