Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Ciguatera Fish Poisoning (CFP) is a non-bacterial seafood poisoning well characterized in the remote archipelagos of French Polynesia, yet poorly documented in the Society archipelago, most notably on Moorea, the second most populated island in French Polynesia, which counts a high proportion of fishermen fishing on a regular basis. To address this knowledge gap, a holistic study of the ciguatera issue was conducted on Moorea. First, ciguatera risk was analysed in terms of incidence rate, fish species most commonly involved and risk stratification in Moorea lagoon based on 2007–2013 epidemiological data. A mean incidence rate of 8 cases per 10,000 inhabitants for the study period and an average under-reporting rate of 54% were found. Taking into account hospitalization and medication fees, and loss of productive days, the health-related costs due to CFP were estimated to be USD $1613 and $749 for each reported and unreported case, respectively, with an overall cost of USD $241,847 for the study period. Comparison of the present status of CFP on Moorea with a risk map established in the late 1970’s showed that the spatial distribution of the risk has stayed relatively stable in time, with the north shore of the island remaining the most prone to ciguatera. Evaluation of the current knowledge on CFP among different populations groups, i.e. fishermen, residents and visitors, was also conducted through direct and indirect interviews. About half of the fishermen interviewed were actually able to identify risky fishing areas. While, overall, the CFP risk perception in the fishing community of Moorea seemed accurate, although not scientifically complete, it was sufficient for the safe practice of their fishing activities. This may be due in part to adaptive responses adopted by 36% of the fishermen interviewed, such as the avoidance of either high-risk fishing sites or toxic species. At the residents and visitors’ level, the study points out a striking lack of awareness of the CFP issue among visitors, as compared to local residents. Indeed, less than 25% of Moorea visitors vs. an average of 98% in residents were aware of CFP or of its presence on the island. Interestingly, evaluation of the fish consumption preferences showed that 70% of visitors do not consume lagoon fish during their stay, not for fear of CFP, but mainly due to the lack of availability of these species in recreational facilities or because they have nutritional preference for pelagic fish. This lack of awareness, along with the report by several CFP patients of the consumption of fish species yet banned for sale, stress the need for improved communication efforts on this critical issue among both residents and visitors on Moorea. The implementation of a public outreach strategy is proposed, based on both existing information networks and low-cost communication actions through information displays at various strategic locations, e.g. Tahiti-Faa’a international airport, the ferry boat station, recreational facilities, as well as the major trading points on Moorea Island.
ISSN: 1568-9883

hal-01391648
https://hal-univ-perp.archives-ouvertes.fr/hal-01391648
DOI : 10.1016/j.hal.2016.10.003

Éditeur(s) : HAL CCSD
Résumé : International audience
Background In life sciences, there is a growing need for new informatics tools designed to provide automated solutions in order to analyze big amounts of images obtained from high-throughput imaging systems. Among the most widely used assays in neurotoxicity, endocrinology and brain diseases, the neurite outgrowth assay is popular. New method Cell-to-cell quantification of the main morphological features of neurite outgrowth assays remains very challenging. Here, we provide a new pipeline developed on Fiji software for analysis of series of two-dimensional images. It allows the automated analysis of most of these features. Results We tested the accuracy and usefulness of the software by confirming the effects of estradiol and hypoxia on in vitro neuronal differentiation, previously published by different authors with manual analysis methods. With this new method, we highlighted original interesting data. Comparison with existing method(s) The innovation brought by this plugin lies in the fact that it can process multiple images at the same time, in order to obtain: the number of nuclei, the number of neurites, the length of neurites, the number of neurites junctions, the number of neurites branches, the length of each branch, the position of the branch in the image, the angle of each branch, but also the area of each cell and the number of neurites per cell. Conclusions This plugin is easy to use, highly sensitive, and allows the experimenter to acquire ready-to-use data coming from a vast amount of images. © 2016 Elsevier B.V.
Journal of Neuroscience Methods

hal-01367152
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01367152
DOI : 10.1016/j.jneumeth.2016.07.011
PUBMED : 27450924

Éditeur(s) : HAL CCSD
Résumé : Land-use changes have deep consequences on species diversity, community structure and ecosystem functioning. Consequently, many works have tried to understand the effects of such changes on the diversity and functional properties of organisms. It has been demonstrated that species traits are oftenly more important than the identity of species per se in order to account understand the ecological roles of species. Besides, while the majority of assessments about land-use change effects on ecosystem functioning have focused on primary producers, the contribution of other organisms is essential to maintain the functioning and resilience of ecosystems.Ants are interesting organisms to track land-use changes due to their abundance, ubiquity and ecological dominance. Ants are present in most of terrestrial biomes and participate in several ecosystem processes through their consumption of food resources. They are also easy to sample and standard methods exist to provide accurate comparisons between studies. While a number of studies have demonstrated abrupt changes in ant species composition along environmental gradients, only a reduced number of such studies have tried to understand how ant community changes affect ecosystem processes. Moreover, the traits responsible for the stability of ant communities in response to land-use changes are little known. It is therefore necessary to develop a methodology that enables a proper identification of ant participation to different ecosystem processes and their contribution to ecosystems’ resistance and resilience.In this thesis I aim to bring some light about i) how land-use changes affect ant community structure? ii) what traits are responsible of the ecological success of a species or it’s extinction from a given environment? iii) how changes in the species or trait composition affect the participation intensity of ants in different ecosystem processes ?
Les perturbations d’origine anthropique sont à l’origine de l’érosion de la biodiversité avec des conséquences sur la structure des communautés et pour le fonctionnement des écosystèmes. La vitesse de ces changements a stimulé de nombreuses recherches portant sur les effets de ces modifications sur la biodiversité des organismes et leurs propriétés fonctionnelles. En effet il a été montré que les traits des espèces sont plus importants que leur identité elle-même pour tenir compte de leurs rôles écologiques. Même si la majorité de ces travaux ont étudié la réponse des producteurs primaires sur les écosystèmes terrestres, la contribution d’autres organismes est toutefois essentielle pour maintenir un fonctionnement et une résilience des écosystèmes corrects.Les fourmis sont des organismes cibles intéressants pour étudier de telles modifications du fait de leur abondance et de leur dominance écologique. En effet elles ont une distribution cosmopolite et participent à de nombreuses fonctions dans l’écosystème terrestre. Elles sont également faciles à étudier et des méthodes d’échantillonnage standard existent. Bien que de nombreuses recherches aient démontré des modifications dans la composition spécifique des fourmis dans des gradients environnementaux, un nombre réduit d’entre elles ont étudié la contribution de ces organismes sur le fonctionnement des écosystèmes. De plus, les traits responsables de la stabilité des communautés de fourmis en réponse à ces modifications sont encore peu connus. Il est donc nécessaire de développer une méthodologie capable d‘identifier la participation des fourmis dans des processus écosystémiques permettant également de quantifier leur activité afin de comprendre comment ces organismes agissent sur les capacités de résistance et résilience des écosystèmes.Ainsi, cette thèse vise mettre en lumière i) en quoi la simplification des habitats liée aux activités humaines a des répercussions sur les communautés de fourmis, ii) quels sont les traits responsables du succès écologique d’une espèce ou de son déclin au sein d’un environnement donné, et iii) comment ces variations en composition spécifique impactent l’intensité de participation des fourmis aux processus écosystémiques.
https://hal.archives-ouvertes.fr/tel-01389102

NNT : 2016YANE0004
tel-01389102
https://hal.archives-ouvertes.fr/tel-01389102
https://hal.archives-ouvertes.fr/tel-01389102v2/document
https://hal.archives-ouvertes.fr/tel-01389102/file/these.pdf

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
A calibration method aimed at converting X-ray intensities into absolute units has been tested in different electron microprobes. The calibration requires measurement of the X-ray peak profile and measurement and calculation of the bremsstrahlung intensity emitted from a reference sample, at the energy of the X-ray line of interest. Specifically, measurements of the U M alpha and M beta lines emitted from UO2 and bremsstrahlung intensities emitted from an Al reference sample have been performed on five different instruments. The aim of the work is to determine to what accuracy X-ray intensities emitted from reference samples of actinide elements are transferable among different electron microprobes (virtual standard). The influence of the focussing geometry and different crystals and proportional counters used is analysed. Strategies to reduce the uncertainties affecting the absolute calibration of the studied lines are discussed.
ISSN: 0026-3672

hal-00411437
https://hal.archives-ouvertes.fr/hal-00411437
DOI : 10.1007/s00604-007-0856-2

Éditeur(s) : HAL CCSD Elsevier
Résumé : In the context of an ongoing monitoring study on the impacts of gold-mining activities on critical ecosystem processes, we explored the use of soil Denitrifying Enzyme Activity (DEA) and Substrate Induced Respiration (SIR) as ecosystem indicators in tropical rainforests of French Guiana. We also propose DEA/SIR ratio as ecosystem attribute able to describe the state of an ecosystem and to reflect changes in ecological processes. With this purpose, we measured SIR, DEA and DEA/SIR ratio in five gold-mining areas and five surrounding natural reference rainforests. We also measured indicators in two conditions of spontaneous regeneration of vegetation (stratified or not) and two conditions of soil rehabilitation (prior preparation of soils or not). We showed a high variability of DEA, SIR and DEA/SIR ratio in the natural reference forests. This pointed out the necessity to identify relevant reference systems - i.e. proving a close match in all relevant ecological dimensions - to compare with closed perturbed systems in order to assess the levels of alterations after disturbances. Results showed a high impact of gold mine on microbial processes with a strong decrease of DEA (10-fold lower), SIR (2-fold lower) and DEA/SIR ratio (8-fold lower) in perturbed areas in comparison with natural reference forests. The type of spontaneous vegetation (stratified or not) influenced the values of indicators as well as prior rehabilitation of soils, demonstrating the capacity of DEA. SIR and DEA/SIR ratio to respond in proportion to the perturbation (robustness) and to the different levels of restoration (sensitivity). The systematic decrease of the ratio DEA/SIR observed in the studied perturbed situations demonstrates clearly that the structure of microbial communities has been also modified. The ratio DEA/SIR proved to be robust and sensitive, and able to describe in fairly fine way changes of soil microbial communities in terms of structure and function in gold mine areas and during processes of restoration. We propose to use DEA, SIR and DEA/SIR ratio as bioindicators of both structural and functional aspects of C and N cycling in soils. Together with others bioindicators based on key supporting functions in soils, these indicators should accurately evaluate the ecological potential of natural ecosystems and the levels of degradation in case of land-use changes. (C) 2012 Elsevier Ltd. All rights reserved.
ISSN: 1470-160X

hal-01190730
https://hal.archives-ouvertes.fr/hal-01190730
DOI : 10.1016/j.ecolind.2012.01.021
PRODINRA : 213639

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Although first-order rate constants are basic ingredients of physical chemistry, biochemistry and systems modeling, their innermost nature is derived from complex physical chemistry mechanisms. The present study suggests that equivalent conclusions can be more straightly obtained from simple statistics. The different facets of kinetic constants are first classified and clarified with respect to time and energy and the equivalences between traditional flux rate and modern probabilistic modeling are summarized. Then, a naive but rigorous approach is proposed to concretely perceive how the Arrhenius law naturally emerges from the geometric distribution. It appears that (1) the distribution in time of chemical events as well as (2) their mean frequency, are both dictated by randomness only and as such, are accurately described by time-based and spatial exponential processes respectively.
Physica A: Statistical Mechanics and its Applications

hal-00845518
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00845518
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00845518v2/document
ARXIV : 1307.4583
DOI : 10.1016/j.physa.2013.05.036

Éditeur(s) : HAL CCSD
Résumé : Gravitropism is a major process in vertical growth as it allows the positioning of plant in the gravity field and thus, for trees, it takes part in the light foraging strategies. Without any gravitropism, trees would adopt a weeping habit or fall on the ground due to the increasing with growth supported weight, especially at the advance regeneration stage (sapling stage) in the understorey, where tree are very slender and poorly stiff. Most of the gravitropic studies are made by physiologists in order to understand the process and thus are associated to complex laboratory methods (genetic engineering, anatomical studies, accurate 2D ou 3D measurements of form changes with time). In order to study the ecological relevance and the specific diversity of gravitropic performances in natural forests, we developed a framework that uses different kinds of datas. Synchronical analysis has been done i) at the population level in large sample of trees and ii) at the tree level from destructive measurement of the dissymmetry maturation strains known to be the main motor of the posture control reaction of trees. In both cases, biomechanical models allows to estimate some aspects of the dynamic gravitropic process. Diachronical analysis has been done in natural conditions on permanent plots, or in a more traditional way, by observing in greenhouse experiments the righting movements of plants artificially tilted. In the first case, the problem is the high variability of natural disturbances and the slowness of growth and movements in the dark understorey. The second choice allows a measurement of a capacity (i.e. the ability of the species to react in quite extreme conditions of verticality disturbance but good for growth light and nutrient conditions) that is more easy to analyse, but is maybe not so relevant for estimating the ecological strategy (some species could have developed a high efficience of gravitropic reaction in natural conditions by avoiding the mechanical disturbance or adapting the reaction to slow growth and changing environments in natural conditions). All approaches use the same basic biomechanical modelling, i) to analyse simultaneously the reaction and the disturbance (due to the weight increase) during growth, or ii) to combine different parameters (geometry, growth, weight, maturation strains) involved in shape changes and posture control. They give a classification of the species according to their gravitropic performances. Results on 15 species are discussed, with relation to shade-tolerance or avoidance.
6th Plant Biomechanics Conference
Cayenne, France

hal-00565956
https://hal.archives-ouvertes.fr/hal-00565956

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : 1. This study focuses on the importance in hyperdiverse regions, such as the Amazonian forest, of accelerating and optimising the census of invertebrate communities.2. We carried out low-intensity sampling of tropical moth (Lepidoptera) assemblages in disturbed forest fragments in Brazil.3. We combined DNA barcoding and taxonomists' expertise to produce fast and accurate surveys of local diversity, including the recognition and census of undescribed and endemic species.4. Integrating expert knowledge of species distributions, we show that despite limited sampling effort, our approach revealed an unexpectedly high number of new and endemic species in severely threatened tropical forest fragments.5. These results highlight the risk of silent centinelan extinctions and emphasise the urgent need for accelerated invertebrate surveys in high-endemism and human-impacted tropical forests.
EISSN: 1752-458X

hal-01602363
https://hal.archives-ouvertes.fr/hal-01602363
DOI : 10.1111/icad.12187
PRODINRA : 389851

Éditeur(s) : HAL CCSD Berlin: A. Asher & Co.
Résumé : International audience
In this work, we compare IASI-retrieved vertical water vapour profiles and related precipitable water over a complex region, namely the Rhine Valley area, during the pre-operational period of IASI exploitation (June?August 2007). Both IASI water vapour mixing ratio profiles and integrated water vapour content are retrieved from L1C radiances spectra using two techniques and compared with water vapour related observations acquired during the Convective and Orographically-induced Precipitation Study (COPS) field campaign that took place in this area at that time (i.e. lidars, radiosoundings and a global positioning system - GPS - station network). This work addresses the issue of IASI vertical spatial resolution and its capability to detect two-layer water vapour structures such as those observed in a mountainous area and which play an important role in convective initiation or inhibition. We found that this capability mostly relies on the type of a-priori background vector (climatology or space-time colocated ECMWF analysis), which is used within the retrieval scheme. Systematic comparison of water vapour products derived from 71 IASI spectra confirms that IASI can retrieve water vapour amounts in 2 km width layers, in the lower troposphere, with an accuracy of approximately 10%.
ISSN: 0369-1845

hal-00923710
https://hal.archives-ouvertes.fr/hal-00923710
https://hal.archives-ouvertes.fr/hal-00923710/document
https://hal.archives-ouvertes.fr/hal-00923710/file/masiello.pdf
DOI : 10.1127/0941-2948/2013/0430

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : The acquisition of reliable data sets representative of hydrological regimes and their variations is a critical concern for water resource assessment. For the subsurface, traditional approaches based on probe measurements, core analysis, and well data can be laborious, expensive, and highly intrusive, while only yielding sparse data sets. For this study, an innovative field survey, merging relative microgravimetry, magnetic resonance soundings, and hydrological measurements, was conducted to evaluate both surface and subsurface water storage variations in a semiarid Sahelian area. The instrumental setup was implemented in the lower part of a typical hillslope feeding to a temporary pond. Weekly measurements were carried out using relative spring gravimeters during 3 months of the rainy season in 2009 over a 350 × 500 m2 network of 12 microgravity stations. Gravity variations of small to medium amplitude (≤220 nm s−2) were measured with accuracies better than 50 nm s−2, revealing significant variations of the water storage at small time (from 1 week up to 3 months) and space (from a couple of meters up to a few hundred meters) scales. Consistent spatial organization of the water storage variations were detected, suggesting high infiltration at the outlet of a small gully. The comparison with hydrological measurements and magnetic resonance soundings involved that most of the microgravity variations came from the heterogeneity in the vadose zone. The results highlight the potential of time lapse microgravity surveys for detecting intraseasonal water storage variations and providing rich space-time data sets for process investigation or hydrological model calibration/evaluation
ISSN: 0043-1397

hal-00857351
https://hal.archives-ouvertes.fr/hal-00857351
DOI : 10.1002/wrcr.20235

Éditeur(s) : HAL CCSD
Résumé : International audience
The fusion of regions from segmentation is often a required step in order to analyze objects in the scene. It allows to group under a same closure property the partitions of an image, which denote the same object. In this way, several studies have been made. Most of the algorithms are based on global information to evaluate the relevance of region combinations and fusion. In this paper, we propose a merging process based on Gestalt vision's theory. The particularity of our method is to preserve photographer's region of interest thanks to the definition of a new criterion based on Di Zenzo gradient. Thus, region fusion preserves photographer's relevant objects of the scene. The performance of the proposed method is evaluated using various natural images, including Berkeley image database and its accuracy is shown.
Color and Imaging Conference
San Jose, CA, United States

hal-00637144
https://hal.archives-ouvertes.fr/hal-00637144

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
I use GPS interseismic velocities and classic 2D elastic half-space models with a screw dislocation to estimate the long-term fault slip rate, locking depth, and the offset between the surface fault trace and the location of the dislocation below the seismogenic zone for 13 segments along 8 major strike-slip faults. Using deduced strike-slip rates and the position of the dislocation to normalize the interseismic velocities to facilitate comparison of spatial patterns of deformation, I show that no substantial differences can be detected, ruling out a large asymmetry in interseismic velocities across the 8 faults used in this study. Only the Carrizo Plain segment of the San Andreas Fault shows a significant asymmetry that cannot be explained by shifting the position of the dislocation at depth relative to the fault trace. However, the resulting perturbation is less than 10% of total strike-slip rate. Fault traces are usually curved, defining a concave side. When the dislocation at depth is significantly offset from the fault trace, the shift is always toward the block on the concave side of the fault trace. This suggests that the fault zone in the lower crust may develop a simpler geometry more consistent with relative motion across the fault than its upper seismogenic part constrained by the structural complexity of the brittle crust. Since the faults used in this study are at different times in their interseismic period, comparing the interseismic velocity fields across them allows identification of possible variations of the interseismic velocities with time. When normalized by slip rate and dislocation location, all the faults show the same interseismic strain with no significant differences between deduced locking depths. These comparisons suggest that if temporal variations occur as suggested by some dynamic earthquake cycle models, they are small and below the accuracy of the available geodetic measurements.
ISSN: 0040-1951

hal-01171753
https://hal.archives-ouvertes.fr/hal-01171753
DOI : 10.1016/j.tecto.2015.01.013

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
In this study, we quantify and analyze the spatial and temporal evolution of the surface displacement of Kahrod landslide located in the center of Alborz range (Iran) within the Haraz valley. This landslide represents a threat for this main drainage axis and its numerous infrastructures. We present three sets of displacement vectors based on GPS technique. An 8-benchmark network has been surveyed four times on a 1-year period basis. It provides accurate information on the rate of displacement within the landslide, and addresses the problem of the mechanical resistance of a small hillock, down slope, under the stress imposed by the landslide. Then. this network is densified (57 marks) and measured twice in 6 months using a rapidstatic approach. This yields to a dense description of surface deformation over the whole landslide. Finally, a 1-year time series of permanent GPS recordings is presented and compared to rainfall. Furthermore, we analyze Envisat radar differential interferograms (DInSAR) spanning the same period as permanent GPS. These geodetic data allow to precisely determine the limits of the current sliding zone and to describe the spatial and temporal evolution of surface displacement. The combination of geodesy and field observations leads to a precise description of the past and present kinematics behavior of Kahrod landslide. The chaotic nature of the sliding mass suggests a first catastrophic landslide in a first episode. During the period of observation, the landslide appears to deform quite steadily, and the evidence of short-term correlation between rainfall and deformation amplitude needs to be confirmed by future measurements. Carrying on the acquisition of GPS and InSAR data within the sliding mass but also within adjacent bedrock should give fundamental information with regards to major activation processes (river sapping, water seeping, earthquakes, or failure within the frontal hill of bedrock) and their potential consequences.
ISSN: 1435-9529

hal-00411318
https://hal.archives-ouvertes.fr/hal-00411318
DOI : 10.1016/j.enggeo.2008.02.013

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Isotopes have been widely used for source identification since the early twentieth century. Recent advances in analytical techniques have increased the precision and the accuracy of isotope analysis. As a result, the use of isotopes has spread to several fields (e.g., ecology, food chemistry, archaeology, environmental health and pollution, and forensic sciences). This review examines the principal uses of stable-isotope analyses for tracing origins or sources, along with statistical methods employed for data interpretation, in recent papers (2007―09) dealing essentially with food authentication, ecology, environmental pollution and other applications, including geology, police forensics, hydrology and archaeometry. The main elements analyzed were H, C, N, O, S, Sr and Pb. For isotope-data interpretation, statistical methods appear to depend essentially on the field, the objectives of the study and the number of parameters. They were not often stated explicitly because the studies were exploratory and aimed primarily at assessing the relevance of the analytical techniques used to identify sources. We critically discuss the adequacy of these methods.
ISSN: 0165-9936

hal-00687383
https://hal.archives-ouvertes.fr/hal-00687383

Éditeur(s) : HAL CCSD Ethnobotany Research and Applications
Résumé : We examined the limitations of parataxonomic inventories for developing management plans for woody plant resources in tropical rain forests of southwestern Amazonia. Using compilations of herbarium labels, forest personnel interviews and published species descriptions, we assessed the accuracy of common names as parataxonomic units (PUs). We identified 384 common names for 310 harvested woody plant species in the Brazilian state of Acre, of which only 50% were unique to a single taxonomic species. About 10% of common names referred to more than one species, more than half of which included multiple genera. For the 106 species from the Acre sample common to the MAP region including Madre de Dios, Peru and Pando, Bolivia, we identified 198 common names. Splitting was much more frequent in this sample, with more than 80% of species having more than one common name. When the Acre sample was expanded to 131 species from the Brazilian Amazon region, including the states of Amazonas and Para, we identified 740 common names, with nearly 90% of species being represented by more than one common name. Errors and inaccuracy of parataxonomy may contribute to market instability if product orders can not be homogenized within regional markets, and to unsustainable harvests if species are mistakenly lumped into single parataxonomic units. We discuss several programs currently being implemented by our collaborative team in the region to address this issue, including field guides based on digital photography, field courses, and workshops featuring discussions between regional inventory personnel and botanists.
ISSN: 1547-3465

hal-01032404
https://hal.archives-ouvertes.fr/hal-01032404

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
Impact of GPS (Global Positioning System) data assimilation is assessed here using a high-resolution numerical weather prediction system at 2.5 km horizontal resolution. The Zenithal Tropospheric Delay (ZTD) GPS data from mesoscale networks are assimilated with the 3DVAR AROME data assimilation scheme. Data from more than 280 stations over the model domain have been assimilated during 15-day long assimilation cycles prior each of the two studied events. The results of these assimilation cycles show that the assimilation of GPS ZTD with the AROME system performs well in producing analyses closer to the ZTD observations in average. Then the impacts of assimilating GPS data on the precipitation forecast have been evaluated. For the first case, only the AROME runs starting a few hours prior the triggering of the convective system are able to simulate the convective precipitation. The assimilation of GPS ZTD observations improves the simulation of the spatial extent of the precipitation, but slightly underestimates the heaviest precipitation in that case compared with the experiment without GPS. The accuracy of the precipitation forecast for the second case is much better. The analyses from the control assimilation cycle provide already a good description of the atmosphere state that cannot be further improved by the assimilation of GPS observations. Only for the latest day (22 November 2007), significant differences have been found between the two parallel cycles. In that case, the assimilation of GPS ZTD allows to improve the first 6 to 12 hours of the precipitation forecast.
ISSN: 0992-7689

hal-00403847
https://hal.archives-ouvertes.fr/hal-00403847
https://hal.archives-ouvertes.fr/hal-00403847/document
https://hal.archives-ouvertes.fr/hal-00403847/file/angeo-27-2739-2009.pdf

Éditeur(s) : HAL CCSD
Résumé : Background Acute splenic sequestration is one of the major clinical forms of sickle cell disease. This potentially life-threatening complication is defined by a rapid sequestration of sickle red blood cells in the spleen. Approximately 30% of young patients will develop this complication and 49% of them will have recurrences. Methods The decision tree method is a statistical method that can act as a medical decision tool in the case of a complex biological problem. The decision tree method is used here to determine the variables involved in the severity and recurrence of acute splenic sequestration crises. Results A prior decision tree shows that platelet level, variation in spleen size, patient age and hygrometry also called relative humidity define acute splenic sequestration severity. A second one shows that spleen size variation, atmospheric pressure and patient age define recurrence. Conclusions For the first time, biological and environmental parameters are combined to discover some interesting rules which can lead to more accurate evaluations of acute splenic sequestration severity and recurrence. Thus, this method provides a sharp diagnostic tool which could improve medical treatment for better patient care.
https://hal.archives-ouvertes.fr/hal-00201460

hal-00201460
https://hal.archives-ouvertes.fr/hal-00201460
https://hal.archives-ouvertes.fr/hal-00201460v2/document
https://hal.archives-ouvertes.fr/hal-00201460/file/DT_Marianne_v2.pdf

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Dating the timing of motion on crustal shear zones is of tremendous importance for understanding the assembly of orogenic terranes. This objective is achieved in this paper by combining petrological and structural observations with novel developments in in situ U-Th-Pb geochronology of allanite. A greenschist facies shear zone within the Mont Blanc Massif is documented. Allanite is synkinematic and belongs to the mylonitic assemblage. LA-ICP-MS U-Th-Pb isotope analyses of allanite reveal high contents and highly radiogenic isotopic compositions of the common-Pb component. The use of measured Pb-isotope compositions of associated minerals (feldspars and chlorite) is critical for accurate common-Pb correction, and provides a powerful mechanism for linking allanite growth to the metamorphic assemblage. A mean 208Pb/232Th age of 29.44 ± 0.95 Ma is accordingly taken for synkinematic allanite crystallisation under greenschist facies conditions. This age reflects the timing of the Mont Blanc underthrusting below the Penninic Front and highlights the potential of directly dating deformation with allanite.
ISSN: 0954-4879

hal-00963545
https://hal.archives-ouvertes.fr/hal-00963545
DOI : 10.1111/ter.12066

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
In this paper, the generalized Stokes problem αu−νΔu+∇p=f, ∇u=0, is considered, where ν denotes the kinematic viscosity, α is a positive parameter proportional to the inverse of the time-step, and the source term f gathers the external forcing, the nonlinear term, and the explicit part of the linear term. The system is derived from a time discretization for the Navier-Stokes equation governing the motion of a two-dimensional incompressible fluid. A domain decomposition numerical method is developed for solving the system. The original domain is divided into several nonoverlapping subdomains, and in each subdomain the concerned equations are discretized by certain finite element methods. A new feature of the method is that the pressure p is required to be piecewise linear rather than piecewise constant, so that the nonphysical oscillations in the solution using piecewise linear pressure are eliminated. However, a difficulty in using piecewise linear pressure is that the Stokes problem in each subdomain involves Dirichlet boundary conditions on pressure at the interface, which is not a real Stokes problem. To avoid the difficulty, a modification is proposed which removes the continuity conditions on the pressure across the interface. In this way, the Stokes problem in each subdomain has only Dirichlet boundary conditions on the velocity. Formulations and discussions for both the methods are presented, which shows that the modified method is simpler than the original one. Numerical experiments are displayed to show the efficiency of the methods, especially that the modified method has the same accuracy as the original one.
ISSN: 0749-159X

hal-00730200
https://hal.archives-ouvertes.fr/hal-00730200

Éditeur(s) : HAL CCSD
Résumé : International audience
The Corinth Rift is the most seismically active zone in Europe. The area is characterized by very localized NSextension at a rate of1.5cm/year, the occurrence of frequent and intensive microseismic crises and occasionalmoderate to large earthquakes like in 1995 (Mw=6.1).Since the year 2000, the Corinth Rift Laboratory (CRL, http://crlab.eu) consisting in a multidisciplinary naturalobservatory, aims at understanding the mechanics of faulting and earthquake nucleation in the Rift. Recent studieshave improved our view about fault geometry and mechanics within CRL, but there is still a critical need for a betterknowledge of the structure at depth both for the accuracy of earthquake locations and for mechanical interpretationof the seismicity.In this project, we aim to analyze the complete seismological database (13 years of recordings) of CRL by usingrecently developed methodologies of structural imaging, in order to determine at the same time and with highresolution, the local 3D structure and the earthquake locations.We perform an iterative joint determination of 3D velocity model and earthquake coordinates. In a first step, Pand S velocity models are determined using first arrival time tomography method proposed by Taillandier et al.(2009). It consists in the minimization of the cost function between observed and theoretical arrival times which isachieved by the steepest descent method (e.g. Tarantola 1987). This latter requires computing the gradient of thecost function by using the adjoint state method (Chavent 1974). In a second step, earthquakes are located in thenew velocity model with a non-linear inversion method based on a Bayesian formulation (Gesret et al. 2015). Step1 and 2 are repeated until the cost function no longer decreases.We present preliminary results consisting in: (1) the adjustement of a 1D velocity model that is used as initialmodel of the 3D tomography and (2) a first attempt of the joint determination of 3D velocity model and earthquakelocation.In addition to the tomographic imaging, we perform a preliminary receiver function analysis of teleseismic datarecorded by the broadband stations of the CRL network. The RF analysis should provide the interface depthsbeneath seismometers and increase the imaging resolution of the upper crustal structures provided by the 3Dtomography. In this first attempt, we adjust the 1D velocity model that produces a synthetic RF as similar aspossible to the observed RF for a subset of data. We compare the identified interfaces with structures imaged bythe tomography.
EGU general assembly 2016
Vienne, Austria

hal-01306224
https://hal-mines-paristech.archives-ouvertes.fr/hal-01306224