Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The analysis of three cataclastic band sets from Provence (France) reveals that the band density, their conjugate angles, their ratio of shear displacement to compaction, and the amount of cataclasis within the bands differ and can be expressed as functions of tectonic setting and petrophysical properties. We identify (1) a dense and closely spaced network of shear-enhanced (reverse) compaction bands; (2) a regularly spaced less dense network of reverse compactional shear bands; and (3) a localized network of normal shear bands. The field data show that strain localization is favored in an extensional regime and is characterized by shear bands with a large shear to compaction ratio and a small conjugate band angle. In contrast, distributed strain is favored in a contractional regime and is characterized by compactional bands with a low ratio of shear to compaction and a large conjugate band angle. To explain the mechanical origin of this strain localization, we quantify the yield strength and the stress evolution in extensional and contractional regimes in a frictional porous granular material. We propose a model of strain localization in porous sands as a function of tectonic stresses, burial depth, material properties, strain hardening and fluid pressure. Our model suggests that stress reduction, inherent to extensional regime, favors strain localization as shear bands, whereas stress increase during contraction favors development of compactional bands.
ISSN: 0191-8141

hal-00856921
https://hal.archives-ouvertes.fr/hal-00856921
DOI : 10.1016/j.jsg.2012.11.011

Éditeur(s) : HAL CCSD Wiley
Résumé :
How Quaternary climatic and geological disturbances influenced the composition of Neotropical forests is hotly debated. Rain fall and temperature changes during and/or immediately after the Last Glacial Maximum (LGM) are thought to have strongly affected the geographical distribution and local abundance of tree species. The paucity of the fossil records in Neotropical forests prevents a direct reconstruction of such processes. To describe community-level historical trends in forest composition, we turned therefore to inferential methods based on the reconstruction of past demographic changes. In particular, we modelled the history of rainforests in the Eastern Guiana Shield over a time scale of several thousand generations, through the application of Approximate Bayesian Computation (ABC) and Maximum Likelihood (ML) methods to diversity data at nuclear and chloroplast loci in eight species or subspecies of rainforest trees. Depending on the species and on the method applied, we detected population contraction, expansion or stability, with a general trend in favour of stability or expansion, with changes presumably having occurred during or after the LGM. These findings suggest that Guiana Shield rain forests have globally persisted, while expanding, through the Quaternary, but that different species have experienced different demographic events, with a trend towards the increase in frequency of light-demanding, disturbance-associated species.
ISSN: 0962-1083

hal-01512150
https://hal.archives-ouvertes.fr/hal-01512150
https://hal.archives-ouvertes.fr/hal-01512150/document
https://hal.archives-ouvertes.fr/hal-01512150/file/Barthe_et_al-_%7B0B6A8C5E-DDFF-4C4E-822C-4E7BC22A6C9B%7D.pdf
DOI : 10.1111/mec.13949

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Polygonal faulting is a widespread phenomenon in sedimentary basins worldwide. It changes basin-scale fluid flow patterns and alters the physical properties of the sediments making it important for hydrocarbon exploration and geohazard analysis. It is generally accepted that polygonal fault patterns derive from dewatering and compaction of the host sediments, but there is debate regarding the processes that control polygonal faulting. New multibeam-bathymetry data from the Hatton Basin, NE Atlantic, show up to 10 m deep and 200-600 m wide troughs at the seabed. They connect to each other forming polygons that are several hundred metres across, i.e. of similar size as buried polygonal fault systems observed in 3D seismic data. The troughs are symmetrical and resemble elongated pockmarks. Previously unpublished high-resolution 2D seismic data from the same area show seismic disturbance zones similar to pipes observed under pockmarks elsewhere as well as faults that have all the characteristics of polygonal fault systems. The observation of the wide disturbance zones is enigmatic, as they appear to follow the polygonal seafloor pattern. The observed extent of the polygonal sediment contraction system is substantial covering almost 37,000 km2. We calculate that some 2600 km3 of possibly carbon-bearing fluids have been expelled from this system and we expect that this will affect the benthic ecosystems, although so far there is only limited evidence for chemosynthetic habitats.
ISSN: 0025-3227

hal-00772468
https://hal.archives-ouvertes.fr/hal-00772468
DOI : 10.1016/j.margeo.2012.09.013

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : Simple sequence repeat (SSR) markers are widely used tools for inferences about genetic diversity, phylogeography and spatial genetic structure. Their applications assume that variation among alleles is essentially caused by an expansion or contraction of the number of repeats and that, accessorily, mutations in the target sequences follow the stepwise mutation model (SMM). Generally speaking, PCR amplicon sizes are used as direct indicators of the number of SSR repeats composing an allele with the data analysis either ignoring the extent of allele size differences or assuming that there is a direct correlation between differences in amplicon size and evolutionary distance. However, without precisely knowing the kind and distribution of polymorphism within an allele (SSR and the associated flanking region (FR) sequences), it is hard to say what kind of evolutionary message is conveyed by such a synthetic descriptor of polymorphism as DNA amplicon size. In this study, we sequenced several SSR alleles in multiple populations of three divergent tree genera and disentangled the types of polymorphisms contained in each portion of the DNA amplicon containing an SSR. The patterns of diversity provided by amplicon size variation, SSR variation itself, insertions/deletions (indels), and single nucleotide polymorphisms (SNPs) observed in the FRs were compared. Amplicon size variation largely reflected SSR repeat number. The amount of variation was as large in FRs as in the SSR itself. The former contributed significantly to the phylogenetic information and sometimes was the main source of differentiation among individuals and populations contained by FR and SSR regions of SSR markers. The presence of mutations occurring at different rates within a marker's sequence offers the opportunity to analyse evolutionary events occurring on various timescales, but at the same time calls for caution in the interpretation of SSR marker data when the distribution of within-locus polymorphism is not known.
ISSN: 1932-6203

hal-01190764
https://hal.archives-ouvertes.fr/hal-01190764
PRODINRA : 214530
PUBMED : 22808236
DOI : 10.1371/journal.pone.0040699

Éditeur(s) : HAL CCSD Pergamon
Résumé : This paper presents an experimental study of the deformation of Beaucaire marl subjected to drained triaxial tests under a wide range of confining pressure. Several methods of observation have been used: X-ray computed tomography, scanning electronic microscopy, quantitative image analysis of thin sections and mercury porosimetry. The analysis at the grain scale shows the existence of various deformation modes depending on the mean stress level. These modes are classified with reference to the brittle and ductile regimes. In specimens deformed under low confining pressure, macro-cracks are localised in a band more contracting than the rest of the specimen. In specimens deformed under moderate confining pressure, a series of micro-scale shear bands characterised by a grain re-orientation towards the direction of macro-shear is detected in the zones of localised deformation. The material in between the micro-scale shear bands is contracting more than the rest of the specimen in some cases; in other cases, a schistosity is detected also in the rest of the specimen outside the localisation zones. In the specimen deformed under high confining pressure, no localisation occurs, and a schistosity is observable throughout the specimen.
ISSN: 1365-1609

hal-00411208
https://hal.archives-ouvertes.fr/hal-00411208
DOI : 10.1016/j.ijrmms.2007.08.007

Éditeur(s) : Amer Geophysical Union
Résumé : The objective of the paper is to analyze the degree of realism of the Parallel Ocean Program ( POP) model of the Los Alamos Laboratory using the combined TOPEX/Poseidon and ERS-1/2 (TPERS) sea level anomaly (SLA) data sets and to present a detailed study of mesoscale characteristics in the North Atlantic. This description spans 8 years of data from 1993 to 2000. At first, we focus on the analysis of the mean eddy kinetic energy ( EKE) and show that the major characteristics of mesoscale variability are realistically simulated despite an overestimation of the EKE model in the Gulf Stream region. We then describe the SLA space and timescales and propagation velocities at a resolution never achieved before. There is a high level of agreement between the model and altimeter values regarding spatial scales and propagation velocities. POP timescales are, however, significantly longer in the subtropical regions. The westward zonal propagation velocity of both the model and the observations are higher than the speed computed from standard Rossby wave theory. The effect of mean current advection on POP and TPERS propagation velocities is also clearly seen in the Labrador Current and in the Gulf Stream and its recirculations. Finally, a study of the seasonal and interannual variability of the high-frequency (HF) EKE is carried out. The model reproduces accurately most of the HF-EKE seasonal variations in the Caribbean Sea and at high latitudes despite a phase advance. A clear HF-EKE interannual variability is then evidenced. Our hypothesis is that a contraction of the subpolar and subtropical gyres due to the North Atlantic Oscillation (NAO) could explain a reduction of the eddy activity in the North Atlantic Current, in the Newfoundland basin, and in the Azores Current. In the Caribbean Sea, the interannual variability of the EKE for both POP and TPERS seems to be caused by an interannual variability of the wind stress.
Journal Of Geophysical Research-oceans (0148-0227) (Amer Geophysical Union), 2004-12 , Vol. 109 , N. C1205 , P. 16 PP.

Droits : 2004 AGU
http://archimer.ifremer.fr/doc/00087/19841/17491.pdf
DOI:10.1029/2004JC002360
http://archimer.ifremer.fr/doc/00087/19841/

Éditeur(s) : Elsevier Science Bv
Résumé : The red drum Sciaenops ocellatus is an estuarine-dependent sciaenid that has supported important recreational and commercial fisheries for many years. Since the 1980s, this species has been farmed in different regions of the world and studies have been conducted to find natural ways to improve its culture. Sciaenops ocellatus is well known for making calls but studies on this characteristic have been mainly restricted to passive acoustics. The aim of this study was to provide acoustic-related information that could be useful in rearing practices. We have studied in detail fish calling characteristics, described their sound-producing mechanism and tested the recordings in different kinds of confinements (floating cages, concrete and fibreglass tanks). Contrary to previous studies, calls were recorded mainly in the morning, between 06:00 and 09:00. Sounds are made only by males; females do not have sound-producing apparatus. The anatomy, muscle ultrastructure data and calling characteristics show conclusively that calls result from the contraction of high speed muscles which are characterized by the very small diameter (7 μm) of the muscle cells. Preliminary results suggest sound characteristics can give information on the fish physiology but further studies are needed. The effects of resonance of fibreglass tanks are experimentally highlighted, showing unequivocally that all the characteristics of fish calls are completely distorted, even in big tanks (13 m3). These findings should be taken into account when using pre-recorded sounds in the rearing of this species because it can affect communication during courtship activity.
Aquaculture (0044-8486) (Elsevier Science Bv), 2014-08 , Vol. 432 , P. 204-211

Droits : 2014 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/00190/30127/28589.pdf
DOI:10.1016/j.aquaculture.2014.05.017
http://archimer.ifremer.fr/doc/00190/30127/

Éditeur(s) : HAL CCSD Society for Molecular Biology and Evolution
Résumé : International audience
Microsatellites (SSRs) are highly susceptible to expansions and contractions. When located in a coding sequence, the insertion or the deletion of a single unit for a mono-, di-, tetra-, or penta(nucleotide)-SSR creates a frameshift. As a consequence, one would expect to find only very few of these SSRs in coding sequences because of their strong deleterious potential. Unexpectedly, genomes contain many coding SSRs of all types. Here, we report on a study of their evolution in a phylogenetic context using the genomes of four primates: human, chimpanzee, orangutan, and macaque. In a set of 5,015 orthologous genes unambiguously aligned among the four species, we show that, except for tri- and hexa-SSRs, for which insertions and deletions are frequently observed, SSRs in coding regions evolve mainly by substitutions. We show that the rate of substitution in all types of coding SSRs is typically two times higher than in the rest of coding sequences. Additionally, we observe that although numerous coding SSRs are created and lost by substitutions in the lineages, their numbers remain constant. This last observation suggests that the coding SSRs have reached equilibrium. We hypothesize that this equilibrium involves a combination of mutation, drift, and selection. We thus estimated the fitness cost of mono-SSRs and show that it increases with the number of units. We finally show that the cost of coding mono-SSRs greatly varies from function to function, suggesting that the strength of the selection that acts against them can be correlated to gene functions.
ISSN: 1759-6653

hal-01544762
https://hal.archives-ouvertes.fr/hal-01544762
DOI : 10.1093/gbe/evt003

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In intrauterine pregnancies of uncertain viability with a gestational sac without a yolk sac (with a mean of three orthogonal transvaginal ultrasound measurements <25 mm), the suspected pregnancy loss should only be confirmed after a follow-up scan at least 14 days later shows no embryo with cardiac activity (Grade C). In intrauterine pregnancies of uncertain viability with an embryo <7 mm on transvaginal ultrasound, the suspected pregnancy loss should only be confirmed after a follow-up scan at least 7 days later (Grade C). In pregnancies of unknown location after transvaginal ultrasound (i.e. not visible in the uterus), a threshold of at least 3510 IU/l for the serum human chorionic gonadotrophin assay is recommended; above that level, a viable intrauterine pregnancy can be ruled out (Grade C). Postponing conception after an early miscarriage in women who want a new pregnancy is not recommended (Grade A). A work-up for women with recurrent pregnancy loss should include the following: diabetes (Grade A), antiphospholipid syndrome (Grade A), hypothyroidism with anti-thyroid peroxidase (anti-TPO) and anti-thyroglobulin (anti-Tg) antibodies (Grade A), vitamin deficiencies (B9, B12) (Grade C), hyperhomocysteinaemia (Grade C), hyperprolactinaemia (Grade B), diminished ovarian reserve (Grade C), and a uterine malformation or an acquired uterine abnormality amenable to surgical treatment (Grade C). The treatment options recommended for women with a missed early miscarriage are vacuum aspiration (Grade A) or misoprostol (Grade B); and the treatment options recommended for women with an incomplete early miscarriage are vacuum aspiration (Grade A) or expectant management (Grade A). In the absence of both chorioamnionitis and rupture of the membranes, women with a threatened late miscarriage and an open cervix, with or without protrusion of the amniotic sac into the vagina, should receive McDonald cerclage, tocolysis with indomethacin, and antibiotics (Grade C). Among women with a threatened late miscarriage and an isolated undilated shortened cervix (<25 mm on ultrasound), cerclage is only indicated for those with a history of either late miscarriage or preterm delivery (Grade A). Among women with a threatened late miscarriage, an isolated undilated shortened cervix (<25 mm on ultrasound) and no uterine contractions, daily treatment with vaginal progesterone up to 34 weeks of gestation is recommended (Grade A). Hysteroscopic section of the septum is recommended for women with a uterine septum and a history of late miscarriage (Grade C). Correction of acquired abnormalities of the uterine cavity (e.g. polyps, myomas, synechiae) is recommended after three early or late miscarriages (Grade C). Prophylactic cerclage is recommended for women with a history of three late miscarriages or preterm deliveries (Grade B). Low-dose aspirin and low-molecular-weight heparin at a preventive dose are recommended for women with obstetric antiphospholipid syndrome (Grade A). Glycaemic levels should be controlled before conception in women with diabetes (Grade A)
ISSN: 0301-2115

hal-01295639
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01295639
DOI : 10.1016/j.ejogrb.2016.02.015
PUBMED : 27039249

Éditeur(s) : HAL CCSD Optical Society Optical Society - SOA Publishing
Résumé : International audience
We show that the canonical single frequency sarcomeric SHG intensity pattern (SHG-IP) of control muscles is converted to double frequency sarcomeric SHG-IP in preserved mdx mouse gastrocnemius muscles in the vicinity of necrotic fibers. These double frequency sarcomeric SHG-IPs are often spatially correlated to double frequency sarcomeric two-photon excitation fluorescence (TPEF) emitted from Z-line and I-bands and to one centered spot SHG angular intensity pattern (SHG-AIP) suggesting that these patterns are signature of myofibrillar misalignement. This latter is confirmed with transmission electron microscopy (TEM). Moreover, a good spatial correlation between SHG signature of myofibrillar misalignment and triad reduction is established. Theoretical simulation of sarcomeric SHG-IP is used to demonstrate the correlation between change of SHG-IP and -AIP and myofibrillar misalignment. The extreme sensitivity of SHG microscopy to reveal the submicrometric organization of A-band thick filaments is highlighted. This report is a first step toward future studies aimed at establishing live SHG signature of myofibrillar misalignment involving excitation contraction defects due to muscle damage and disease.
ISSN: 2156-7085

hal-00952823
https://hal.archives-ouvertes.fr/hal-00952823
https://hal.archives-ouvertes.fr/hal-00952823/document
https://hal.archives-ouvertes.fr/hal-00952823/file/boe-5-3-858_002.pdf
DOI : 10.1364/BOE.5.000858

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
We provide new constraints on the modes of mantle exhumation and denudation in the pre-orogenic Pyrenees by investigating the poorly known peridotites located east of the Lherz body, in eastern Ariè ge (Vicdessos, Urs, Bestiac, Caussou and Prades main peridotitic bodies). We show that: (1) numerous peridotite bodies, not described so far, are constituted by decametric to sub-metric outcrops scattered between and around the main outcrops identified by Monchoux (1970); (2) most of the peridotites form blocks and lenses of various sizes, from millimetric monocrystalline grains to hectometric olistoliths, embedded in debris flows involving mainly Mesozoic metasediments; these peridotites can therefore be linked to the S-type peridotites of Lagabrielle et al. (2010), and share similarities with the peridotites of Lherz region (Clerc et al., 2012). All originated from tectono-sedimentary processes associated with mantle exhumation in relation with extreme thinning and breakoff of the continental basement; (3) the various petrographic characters of these peridotites and their heterogeneity in serpentinisation degree imply a peculiar mode of exhumation, which merges mantle fragments inherited from different structural levels; (4) the lack of tectonic structures such as faults and shear planes associated with the ultramafic-rich breccia formation and the presence of neoformation of metamorphic minerals within the matrix preclude their origin as cataclasites related to the Latest Cretaceous and Tertiary Pyrenean contractional deformation. The peridotites of eastern Ariè ge are indisputable witnesses of the presence of an inverted hyper-extended Cretaceous passive margin forming the current North Pyrenean zone. The geometry of the extensional system was complex and probably associated with strike-slip faults and transcurrent motion. ß 2016 The Authors. Published by Elsevier Masson SAS on behalf of Acadé mie des sciences. This is an open access article under the CC BY-NC-ND license (http://creativecommons. org/licenses/by-nc-nd/4.0/).
ISSN: 1631-0713

Droits : http://creativecommons.org/licenses/by-nc-nd/
insu-01280502
https://hal-insu.archives-ouvertes.fr/insu-01280502
https://hal-insu.archives-ouvertes.fr/insu-01280502/document
https://hal-insu.archives-ouvertes.fr/insu-01280502/file/1-s2.0-S1631071316000043-main.pdf
DOI : 10.1016/j.crte.2015.12.003

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
ISSN: 0362-546X

hal-00816761
https://hal.univ-antilles.fr/hal-00816761
DOI : 10.1016/0362-546X(93)90065-Z

Éditeur(s) : HAL CCSD Wiley
Résumé :  
The chloroplast genome has been widely used to describe genetic diversity in plant species. Its maternal inheritance in numerous angiosperm species and low mutation rate are suitable characters when inferring historical events such as possible recolonization routes. Here we have studied chloroplast DNA variation using PCR-RFLP (polymerase chain reaction-restriction fragment length polymorphism) with seven pairs of primers and four restriction enzymes in 14 populations of Vouacapoua americana (Caesalpiniaceae) a neotropical tree sampled throughout French Guiana. Population diversity (Hs), total gene diversity (Ht) and differentiation among populations (GST) were estimated using Nei's method as 0.09, 0.87 and 0.89, respectively. This is consistent with the limited gene flow associated with synzoochory in this species. The genetic structure observed in the north of French Guiana suggests that historical events such as contractions and recent recolonizations have had a large impact on the distribution of genetic diversity in this species.
ISSN: 0962-1083

hal-01032176
https://hal.archives-ouvertes.fr/hal-01032176
DOI : 10.1046/j.1365-294x.2000.01027.x

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
We use lithospheric-scale analog models to study the reactivation of pre-existing heterogeneities under oblique shortening and its relation to the origin of arcuate orogens. Reactivation of inherited rheological heterogeneities is an important mechanism for localization of deformation in compressional settings and consequent initiation of contractional structures during orogenesis. However, the presence of an inherited heterogeneity in the lithosphere is in itself not sufficient for its reactivation once the continental lithosphere is shortened. The heterogeneity orientation is important in determining if reactivation occurs and to which extent. This study aims at giving insights on this process by means of analog experiments in which a linear lithospheric heterogeneity trends with various angles to the shortening direction. In particular, the key parameter investigated is the orientation (angle α) of a strong domain (SD) with respect to the shortening direction. Experimental results show that angles α ≥ 75° (high obliquity) allow for reactivation along the entire SD and the development of a linear orogen. For α ≤ 60° (low obliquity) the models are characterized by the development of an arcuate orogen, with the SD remaining partially non-reactivated. These results provide a new mechanism for the origin of some arcuate orogens, in which orocline formation was not driven by indentation or subduction processes, but by oblique shortening of inherited heterogeneities, as exemplified by the Ouachita orogen of the southern U.S.
ISSN: 0278-7407

insu-01498544
https://hal-insu.archives-ouvertes.fr/insu-01498544
https://hal-insu.archives-ouvertes.fr/insu-01498544/document
https://hal-insu.archives-ouvertes.fr/insu-01498544/file/Calignano_et_al-2017-Tectonics.pdf
DOI : 10.1002/2016TC004424

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
We decipher late-orogenic crustal flow characterized by feedback relations between partialmelting and deformation in the Variscan Montagne Noire gneiss dome. The dome shape and finite strainpattern of the Montagne Noire Axial Zone (MNAZ) result from the superimposition of three deformations(D1, D2 and D3). The early flat-lying S1 foliation is folded by D2 upright ENE-WSW folds and transposed in thecentral and southern part of the MNAZ into steep D2 high-strain zones consistent with D2 NW-SE horizontalshortening, in bulk contractional coaxial deformation regime that progressively evolved to noncoaxial dextraltranspression. The D2 event occurred under metamorphic conditions that culminated at 0.65 ± 0.05 GPa and 720± 20°C. Along the anatectic front S1 and S2 foliations are transposed into a flat-lying S3 foliation with top-to-NEand top-to-SW shearing in the NE and SW dome terminations, respectively. These structures define a D3 transitionzone related to vertical shortening during coaxial thinning with a preferential NE-SW to E-W directedstretching. Depending on structural level, the metamorphic conditions associated with D3 deformation rangefrom partial melting conditions in the dome core to subsolidus conditions above the D3 transition zone. Wesuggest that D2 and D3 deformation events were active at the same time and resulted from strain partitioningon both sides of the anatectic front that may correspond to a major rheological boundary within the crust.
ISSN: 0278-7407

hal-01208098
https://hal.archives-ouvertes.fr/hal-01208098

Résumé : Introduction: To develop its 2005-2009 strategic plan, IFREMER made two prospective analysis studies in 2003: a thematic prospective analysis and a sectorial prospective analysis. The "aquafarming" sectorial prospective analysis, based primarily on an IFREMER idea, particularly brought to light the difference in nature of problems posed by the future evolution of shellfish farming, fish farming and other stockbreeding (pearl farming and shrimp farming). In addition, the prospective analyses made on an international scale by the FAO (2002, 2004) and the IFPRI (2003) emphasise that the development of aqua farming is the required condition for satisfying world demand of consumer aquatic products, given the foreseeable weak growth, indeed, the stagnation of caught-fish production. Considering the weak development of sea fish farming in France, a country with a long tradition of shellfish farming, it has seemed necessary to deepen the thinking about the prospective analysis devoted to sea fish farming by widening it to include all players interested in this production sector. The goal is to ensure that the strategic plan's objectives, stated in the 2005-2008 four-year contract, define a strategy fully compliant with one of IFREMER's three missions in particular: Contribute to the economic development of the maritime world.
Introduction : Pour élaborer son plan stratégique 2005-2009, l'Ifremer a réalisé en 2003 deux exercices de prospective : une prospective thématique, et une prospective sectorielle. La prospective sectorielle « aquaculture », fondée essentiellement sur une réflexion Ifremer, a mis notamment en évidence la différence de nature des problèmes posés par les évolutions futures de la conchyliculture, de la pisciculture et des autres élevages (perliculture et crevetticulture). Par ailleurs, les prospectives réalisées à l'échelle internationale par la FAO (2002, 2004) et l'IFPRI (2003) soulignent que le développement de l'aquaculture est la condition nécessaire de satisfaction de la demande mondiale d'approvisionnement en produits aquatiques de consommation, compte tenu de la prévisible faible croissance, voire stagnation, de la production des pêches de capture. Considérant le faible développement de la pisciculture marine en France, pays de longue tradition conchylicole, il est apparu nécessaire d'approfondir la réflexion prospective consacrée à la pisciculture marine, en l'élargissant à tous les acteurs concernés par ce secteur de production. Le but est de s'assurer que les objectifs du plan stratégique, déclinés dans le contrat quadriennal 2005-2008, définissent une stratégie pleinement conforme à l'une des trois missions de l'Ifremer : contribuer au développement économique du monde maritime.

Droits : 2006 Ifremer
http://archimer.ifremer.fr/doc/2006/rapport-1506.pdf
http://archimer.ifremer.fr/doc/00000/1506/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Field observations of highly porous and permeable sandstone in the Orange area (S-E Basin, France) show that networks of shear-enhanced compaction bands can form in a contractional regime at burial depths of about 400 m ± 100 m. These bands show equal compaction and shear displacements, are organized in conjugate and densely distributed networks, and are restricted to the coarse-grained (mean grain diameter of 0.6 ± 0.1 mm) and less porous (porosity of 26 ± 2%) sand layers. The bands are crush microbreccia with limited grain comminution and high grain microfracture density. They show reductions of permeability (mD) ranging from 0 to little more than 1 order of magnitude. They show no control on the alteration products related to meteoric water flow, which suggests that these shear-enhanced compaction bands have no or only negligible influence on subsurface fluid flow. Their selective occurrence and small (20%) reduction in transmissibility in densely populated layers prevented them from compartmentalizing the sandstone reservoirs. A comparison with compaction-band populations in the Navajo and Aztec sandtsones (western U.S.) emphasizes the role of burial depth and the presence of chemical compaction processes for the sealing potential of deformation bands.
ISSN: 0191-8141

hal-00807309
https://hal.archives-ouvertes.fr/hal-00807309
DOI : 10.1016/j.jsg.2012.11.008

Éditeur(s) : HAL CCSD Société géologique de France
Résumé : International audience
The Messinian salinity crisis (MSC) is characterized by gigantic erosion that remodels the margins while a thick, essentially evaporitic and detrital, sedimentary sequence forms in the deep basins. Based on recent (MAURESC, 2003) and earlier (MESEA 1, 1990; MAGIRAA, 1996; GEOBREST, 2002) seismic reflection data, this work brings to light the record of the MSC on the Provençal margin, which has until now been rarely explored from this perspective. Beyond its strictly regional interest, this study fits into a larger synthesis of MSC seismic markers in the Mediterranean and Black Sea marine domain [Lofi et al., 2011] and employs the new nomenclature established on this occasion. The results obtained reveal a Messinian detrital body (CU unit) of 625 metres maximum thickness at the foot of the margin, accumulating at the mouths of the principal canyons. Its form, facies and extension assimilate it to clastic fans, fed by subaerial erosion linked to the MSC. The relative geometry of CU and the Messinian units MU and UU deposited in the deep basin give indications to their chronostratigraphic relations. The deposition of the CU unit is posterior to the basal part of the mobile unit consisting of halite (MU), but contemporary to its top. These results agree with the recent scenarii, which propose that the precipitation of MU in the basin began early, during the lowering of the sea level, and ended at a low level during the MSC [Blanc, 2000; Martin et al., 2001; Sage et al., 2005; Ryan, 2009]. The UU unit surmounts MU and is subdivided into two sub-units with perceptibly different seismic facies : UU1 at the base and UU2 at the summit. UU1 could correspond to a unit containing more halite and/or more clastic material than UU2. The UU1 sub-unit could be partially contemporary to the CU unit. Concerning salt tectonics and its markers, three structural provinces have been evidenced in the sector of study, respectively : an upslope domain in extension (normal faults), an intermediary domain in translation (tabular MU) and a downslope domain in contraction (salt diapirs). These domains are directly linked to the gravity spreading and/or gliding of the brittle sedimentary cover formed by the CU, UU and Plio-Quatenary units and of the mobile level, MU. In the study area, a close relation between the distribution and thickness of CU and salt tectonics has additionally been evidenced at the mouths of the large Messinian canyons, being best expressed where CU is thick.
EISSN: 1777-5817

hal-00622998
https://hal-brgm.archives-ouvertes.fr/hal-00622998
DOI : 10.2113/gssgfbull.182.2.181

Éditeur(s) : HAL CCSD Société géologique de France
Résumé : International audience
The Messinian salinity crisis (MSC) is characterized by gigantic erosion that remodels the margins while a thick, essentially evaporitic and detrital, sedimentary sequence forms in the deep basins. Based on recent (MAURESC, 2003) and earlier (MESEA 1, 1990; MAGIRAA, 1996; GEOBREST, 2002) seismic reflection data, this work brings to light the record of the MSC on the Provençal margin, which has until now been rarely explored from this perspective. Beyond its strictly regional interest, this study fits into a larger synthesis of MSC seismic markers in the Mediterranean and Black Sea marine domain [Lofi et al., 2011] and employs the new nomenclature established on this occasion. The results obtained reveal a Messinian detrital body (CU unit) of 625 metres maximum thickness at the foot of the margin, accumulating at the mouths of the principal canyons. Its form, facies and extension assimilate it to clastic fans, fed by subaerial erosion linked to the MSC. The relative geometry of CU and the Messinian units MU and UU deposited in the deep basin give indications to their chronostratigraphic relations. The deposition of the CU unit is posterior to the basal part of the mobile unit consisting of halite (MU), but contemporary to its top. These results agree with the recent scenarii, which propose that the precipitation of MU in the basin began early, during the lowering of the sea level, and ended at a low level during the MSC [Blanc, 2000; Martin et al., 2001; Sage et al., 2005; Ryan, 2009]. The UU unit surmounts MU and is subdivided into two sub-units with perceptibly different seismic facies : UU1 at the base and UU2 at the summit. UU1 could correspond to a unit containing more halite and/or more clastic material than UU2. The UU1 sub-unit could be partially contemporary to the CU unit. Concerning salt tectonics and its markers, three structural provinces have been evidenced in the sector of study, respectively : an upslope domain in extension (normal faults), an intermediary domain in translation (tabular MU) and a downslope domain in contraction (salt diapirs). These domains are directly linked to the gravity spreading and/or gliding of the brittle sedimentary cover formed by the CU, UU and Plio-Quatenary units and of the mobile level, MU. In the study area, a close relation between the distribution and thickness of CU and salt tectonics has additionally been evidenced at the mouths of the large Messinian canyons, being best expressed where CU is thick.
EISSN: 1777-5817

hal-00498286
https://hal.archives-ouvertes.fr/hal-00498286

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Second harmonic generation (SHG) microscopy is a powerful tool for studying submicron architecture of muscles tissues. Using this technique, we show that the canonical single frequency sarcomeric SHG intensity pattern (SHG-IP) of premetamorphic xenopus tadpole tail muscles is converted to double frequency (2f) sarcomeric SHG-IP in metamorphic climax stages due to massive physiological muscle proteolysis. This conversion was found to rise from 7% in premetamorphic muscles to about 97% in fragmented muscular apoptotic bodies. Moreover a 66% conversion was also found in non-fragmented metamorphic tail muscles. Also, a strong correlation between predominant 2f sarcomeric SHG-IPs and myofibrillar misalignment is established with electron microscopy. Experimental and theoretical results demonstrate the higher sensitivity and the supra resolution power of SHG microscopy over TPEF to reveal 3D myofibrillar misalignment. From this study, we suggest that 2f sarcomeric SHG-IP could be used as signature of triad defect and disruption of excitation–contraction coupling. As the mechanism of muscle proteolysis is similar to that found in mdx mouse muscles, we further suggest that xenopus tadpole tail resorption at climax stages could be used as an alternative or complementary model of Duchene muscular dystrophy.
ISSN: 1047-8477

hal-01134174
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01134174
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01134174/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01134174/file/Recher%20et%20al_JSB-2015_hal.pdf
DOI : 10.1016/j.jsb.2015.03.003