Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Studies on tree biomechanical design usually focus on stem stiffness, resistance to breakage or uprooting, and elastic stability. Here we consider another biomechanical constraint related to the interaction between growth and gravity. Because stems are slender structures and are never perfectly symmetric, the increase in tree mass always causes bending movements. Given the current mechanical design of trees, integration of these movements over time would ultimately lead to a weeping habit unless some gravitropic correction occurs. This correction is achieved by asymmetric internal forces induced during the maturation of new wood. The long-term stability of a growing stem therefore depends on how the gravitropic correction that is generated by diameter growth balances the disturbance due to increasing self weight. General mechanical formulations based on beam theory are proposed to model these phenomena. The rates of disturbance and correction associated with a growth increment are deduced and expressed as a function of elementary traits of stem morphology, cross-section anatomy and wood properties. Evaluation of these traits using previously published data shows that the balance between the correction and the disturbance strongly depends on the efficiency of the gravitropic correction, which depends on the asymmetry of wood maturation strain, eccentric growth, and gradients in wood stiffness. By combining disturbance and correction rates, the gravitropic performance indicates the dynamics of stem bending during growth. It depends on stem biomechanical traits and dimensions. By analyzing dimensional effects, we show that the necessity for gravitropic correction might constrain stem allometric growth in the long-term. This constraint is compared to the requirement for elastic stability, showing that gravitropic performance limits the increase in height of tilted stem and branches. The performance of this function may thus limit the slenderness and lean of stems, and therefore the ability of the tree to capture light in a heterogeneous environment.
ISSN: 0022-5193

hal-00534316
https://hal.archives-ouvertes.fr/hal-00534316
DOI : 10.1016/j.jtbi.2008.10.011

Éditeur(s) : HAL CCSD Lippincott, Williams & Wilkins
Résumé : International audience
Purpose of review Toxoplasmosis in immunocompromised patients is associated with a high mortality rate. Molecular techniques are important tools to diagnose acute disease in immunocompromised patients, but there are various methods with variable efficiency. Some of them have been validated for the diagnosis of congenital toxoplasmosis, but the impact of their use has not been evaluated in immunocompromised patients. Recent findings Toxoplasmosis is of increasing importance in non-HIV immunocompromised patients. In addition, the picture of disease shows greater severity in South America, both in immunocompetent study participants and in congenitally infected infants. These epidemiological differences could influence the sensitivity of diagnostic methods. This review analyzes recent data on molecular diagnosis and compares them with older ones, in light of progress gained in molecular techniques and of recent epidemiological findings. Most recent studies were conducted in South America and used PCR targeting the B1 gene. PCR on blood could allow diagnosing a significant proportion of patients with ocular toxoplasmosis in Brazil. Summary Quantitative PCR methods with specific probes should be used to improve sensitivity and warrant specificity. Performance of quantitative PCR targeting the repeated 529 bp sequence for the diagnosis of toxoplasmosis in immunocompromised patients needs evaluation in field studies in South America and in western countries.
ISSN: 0951-7375

hal-01390970
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01390970
DOI : 10.1097/QCO.0000000000000275
PUBMED : 27191201

Éditeur(s) : HAL CCSD
Résumé : Coral reefs are amongst the richest and more emblematic ecosystems of the world. These hotspots of biodiversity provide many services to Human societies, bringing leisure and economic added values. In many areas, especially developing countries, these ecosystems are submitted to both climate change (rise of sea temperature and level, acidification) and human coastal pressures (urbanisation, resources exploitation). In this context, an increasing number of Marine Protected Areas is settled on coral reefs environments in order to ensure their conservation and to mitigate local pressures. Hence, one of MPAs Managers' missions is to bring ecological and social data together to build integrated indicators of effectiveness. In Reunion Island, a MPA called the Marine reserve of La Réunion was settled in 2007 along a densely urbanised and populated fringing reef coast. In order to better evaluate its MPA effectiveness, the manager requires the integration of social stakes to the management plan. A uses monitoring protocol was developed in this purpose using an ultra light aircraft and a camera. Data on 15 different recreational and non-recreational uses were acquired between 2010 and 2013, flying 48 times a year, and entered into a Geographic Information System. A huge resulting database allowed the building of an initial knowledge of the spatio-temporal distribution of uses within the Reserve. It also enabled the analysis of the uses' evolution regarding various factors of variations (amenities, facilities, shark attacks, tourism, etc.). Finally, we assessed the contribution to management efficiency using social indicators (governance, pressure indicators), and to interdisciplinary research in bringing ecologic and uses data together. This thesis brings a brand new information about coastal human activity and spatio-temporal dynamics of direct pressures on reef. This tool, designed to be reproducible and cost-optimized, enables the production of a set of indicators. Its integration to the management plan exclusively depends on the strategic choices of the manager.
Les récifs coralliens figurent parmi les biomes côtiers les plus emblématiques de la planète. Ces points chauds de la biodiversité mondiale sont convoités par les sociétés humaines pour leurs qualités paysagères et leur plus-value économique. Exposés au même titre que de nombreux écosystèmes côtiers aux changements climatiques (élévation de la température, acidification des océans), ils sont de toutes parts soumis à une anthropisation littorale mal maitrisée (urbanisation, surexploitation des ressources). Dans ce contexte, de plus en plus d' Aires Marines Protégées (AMP) s'établissent sur des écosystèmes anthropisés, les amenant à intégrer l'Homme au coeur de la gestion. À La Réunion où l'urbanisation littorale est dense et où le paysage des usages littoraux ne cesse de s’étoffer, une Réserve Naturelle Marine (RNMR) a été établie en 2007 sur un récif frangeant. L’évaluation de l’efficacité de cette AMP par son gestionnaire doit se faire par le biais d'un ensemble d'indicateurs écologiques et socio-économiques. C’est en vue d’apporter des connaissances sur la fréquentation et les usages pratiqués au sein de la RNMR que cette thèse a été initiée. Elaboré sur la base d'un suivi en ULM, un protocole a été reproduit chaque année entre 2010 et 2013 et a permis la constitution d'une base de données spatialisée, dont l'exploitation a produit trois types de résultats: i) une connaissance initiale de la répartition spatio-temporelle des usages au sein de la RNMR; ii) une compréhension de l'évolution des dynamiques spatio-temporelles à la lumière des facteurs de variations identifiés (aménagements, aménités, crise requin, tourisme, etc.), et iii) une contribution à la gestion par le développement d'indicateurs sociaux (gouvernance, pressions), et à la recherche interdisciplinaire par une confrontation des données de fréquentation et des données écologiques du milieu. La réflexion menée dans le cadre de cette thèse apporte un éclairage nouveau sur les usages et la fréquentation des littoraux coralliens à La Réunion, et leur traduction en termes de pression anthropique directe. Pensé pour être reproductible et optimisé en termes de coût, cet outil permet la production d’un ensemble d’indicateurs dont l’intégration au plan de gestion dépend exclusivement des choix stratégiques du gestionnaire.
https://tel.archives-ouvertes.fr/tel-01308703

Droits : http://creativecommons.org/licenses/by-nc-sa/
tel-01308703
https://tel.archives-ouvertes.fr/tel-01308703
https://tel.archives-ouvertes.fr/tel-01308703/document
https://tel.archives-ouvertes.fr/tel-01308703/file/Th%C3%A8se_Lemahieu.pdf

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : Though the root biomass of tropical rainforest trees is concentrated in the upper soil layers, soil water uptake by deep roots has been shown to contribute to tree transpiration. A precise evaluation of the relationship between tree dimensions and depth of water uptake would be useful in tree-based modelling approaches designed to anticipate the response of tropical rainforest ecosystems to future changes in environmental conditions. We used an innovative dual-isotope labelling approach (deuterium in surface soil and oxygen at 120-cm depth) coupled with a modelling approach to investigate the role of tree dimensions in soil water uptake in a tropical rainforest exposed to seasonal drought. We studied 65 trees of varying diameter and height and with a wide range of predawn leaf water potential (I-pd) values. We confirmed that about half of the studied trees relied on soil water below 100-cm depth during dry periods. I-pd was negatively correlated with depth of water extraction and can be taken as a rough proxy of this depth. Some trees showed considerable plasticity in their depth of water uptake, exhibiting an efficient adaptive strategy for water and nutrient resource acquisition. We did not find a strong relationship between tree dimensions and depth of water uptake. While tall trees preferentially extract water from layers below 100-cm depth, shorter trees show broad variations in mean depth of water uptake. This precludes the use of tree dimensions to parameterize functional models.
ISSN: 0029-8549

hal-01032433
https://hal.archives-ouvertes.fr/hal-01032433
DOI : 10.1007/s00442-013-2724-6

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background - Pregnant women are a vulnerable population. Although regular follow-ups are recommended during pregnancy, not all pregnant women seek care. This pilot study wanted to assess whether the integration of data from administrative health information systems and socio-economic features allows identifying disparities in prenatal care trajectories.Methods - Prenatal care trajectories were extracted from the permanent sample of the French health insurance information system linked to the hospital discharge information system. The records of 2518 women who gave birth without complications in France in 2009 were analyzed. State sequence data analysis was performed to identify homogeneous groups of prenatal care trajectories. Socio-economic data were used to characterize their living environment.Results -We identified three groups of homogeneous prenatal care trajectories: (i) women with relatively high prenatal care consumption (~11 %), (ii) women with no prenatal care (~21 %), and (iii) women with an intermediate level of prenatal care (~66 %). Analysis of the socio-economic data demonstrated the association between disparities in prenatal care trajectories and the women’s living environment. Women with relatively high care consumption generally lived in socio-economically privileged areas (better education levels, employment status and housing conditions) compared with women with few or no prenatal care.Conclusions -Although ecological, our approach demonstrates that data from health administrative information systems could be used to describe prenatal care. However, more individual variables and an improvement of the data quality are needed to efficiently monitor the content and timing of prenatal care. Moreover, state sequence analysis, which was used in this context for the first time, proves to be an interesting approach to explore care trajectories. Finally, the integration of heterogeneous sources of data, including contextual information, might help identifying areas that require health promotion actions toward vulnerable populations, such as pregnant women.
ISSN: 1472-6963

hal-01169792
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169792
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169792/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169792/file/Mining%20care%20trajectories%20using%20health%20administrative.pdf
DOI : 10.1186/s12913-015-0857-5

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Outbreaks of the corallivorous crown-of-thorns seastar Acanthaster planci (COTS) represent one of the greatest disturbances to coral reef ecosystems in the Indo-Pacific, affecting not only coral reefs but also the coastal communities which rely on their resources. While injection approaches are increasingly used in an attempt to control COTS densities, most of them display severe drawbacks including logistical challenges, high residual environmental impacts or low cost-effectiveness. We tested a new alternative control method based upon acidic injections of cheap, 100% natural products. We investigated the lethal doses, intra-and inter-specific disease transmission and immune responses of COTS when injected with fresh lime juice (extracted from local Citrus arantifolia) and white spirit vinegar. High COTS mortality was achieved with small volumes: 10–20 ml per seastar induced death in 89%/ 97% of injected specimens after an average 34.3 h/29.8 h for lime juice and vinegar respectively. Highest efficiency was reached for both solutions with double shots of (2 × 10 ml) in two different areas on the body: 100% mortality occurred within 12–24 h, which is similar or faster compared with other current injection methods. Multiple immune measures suggested that death was very likely caused by pH stress from the acidic solutions rather than a bacterial infection. Contagion to either conspecifics or a variety of other reef species was not observed, even at COTS densities 15 times higher than the highest naturally reported. 10 to 20 l lime juice/vinegar could kill up to a thousand COTS at a cost of less than 0.05 USD per specimen; no permits or special handling procedures are required. We conclude that injections of lime juice and vinegar offer great advantages when compared to current best practises and constitute a cheap and natural option for all reefs affected by COTS.
ISSN: 1932-6203

Droits : http://creativecommons.org/licenses/by/
hal-01208272
https://hal-univ-perp.archives-ouvertes.fr/hal-01208272
https://hal-univ-perp.archives-ouvertes.fr/hal-01208272/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01208272/file/journal.pone.0137605.pdf
DOI : 10.1371/journal.pone.0137605

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
: Zebrafish, Danio rerio, is increasingly used as an animal model to study the effects of pharmaceuticals and environmental estrogens. As most of these estrogens have only been tested on human estrogen receptors (ERs), it is necessary to measure their effects on zebrafish ERs. In humans there are two distinct nuclear ERs (hERα and hERβ), whereas the zebrafish genome encodes three ERs, zfERα and two zfERβs (zfERβ1 and zfERβ2). In this study, we established HeLa-based reporter cell lines stably expressing each of the three zfERs. We first reported that estrogens more efficiently activate the zfERs at 28°C as compared to 37°C, thus reflecting the physiological temperature of zebrafish in wildlife. We then showed significant differences in the ability of agonist and antagonist estrogens to modulate activation of the three zfER isotypes in comparison to hERs. Environmental compounds (bisphenol A, alkylphenols, mycoestrogens) which are hER panagonists and hERβ selective agonists displayed greater potency for zfERα as compared to zfERβs. Among hERα selective synthetic agonists, PPT did not activate zfERα while 16α-LE2 was the most zfERα selective compound. Altogether, these results confirm that all hER ligands control in a similar manner the transcriptional activity of zfERs although significant differences in selectivity were observed among subtypes. The zfER subtype selective ligands that we identified thus represent new valuable tools to dissect the physiological roles of the different zfERs. Finally, our work also points out that care has to be taken in transposing the results obtained using the zebrafish as a model for human physiopathology.
ISSN: 0041-008X

inserm-01067804
http://www.hal.inserm.fr/inserm-01067804
http://www.hal.inserm.fr/inserm-01067804/document
http://www.hal.inserm.fr/inserm-01067804/file/pintot_et_al._manuscript.pdf
DOI : 10.1016/j.taap.2014.07.020

Éditeur(s) : HAL CCSD Water Quality Research Journal of Canada
Résumé : International audience
The adsorption of some major pharmaceutical products (sulfamethoxazole, caffeine, iopromide and carbamazepine) in water was evaluated using four types of activated carbon, three powdered activated carbon (PAC) and one fluidized, coagulated and flocculated activated carbon (FAC) extracted from a Carboplus®P pilot. These substances were the most frequently quantified (in 50% of samples at least) in surface waters of the Vilaine's basin (Brittany, France) during three sampling campaigns. Jar test experiments were carried out in order to assess the removal efficiency of the four activated carbons. Carbamazepine and caffeine were well removed with PAC with a maximum removal rate of 80% whereas it was more difficult for sulfamethoxazole and iopromide with a maximum of 39%. For each molecule, removal rates are clearly dependent on PAC nature. The overall results with FAC are clearly distinguishable from PAC tests with gains of performance on all target molecules (from 80 to >95%).
Water Quality Research Journal of Canada

hal-00878098
https://hal.archives-ouvertes.fr/hal-00878098
DOI : 10.2166/wqrjc.2013.138

Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : International audience
Background : This study examines the radial trend in wood stiffness of tropical rainforest trees. The objective was to determine if the type of growing environment (exposed plantation or dense primary forest) would have an effect on this radial trend. Methods : The axial elastic modulus of wood samples, representing a pith to bark cross-section, of six trees from several French Guianese species (two of Eperua falcata, one of Eperua grandiflora, two of Carapa procera and one of Symphonia gloubulifera) was measured using a dynamic "forced vibration" method. Results : Primary forest trees were observed to have a decrease in wood stiffness from pith to bark, whereas plantation trees, from the same genus or species, displayed a corresponding increase in wood stiffness. Juvenile wood stiffness appears to vary depending on the environment in which the tree had grown. Conclusion : We suggest that the growth strategy of primary forest trees is to produce wood resistant to selfbuckling so that the height of the canopy may be obtained with the maximum of efficiency. In contrast, the growth strategy of the trees growing in an exposed plantation is to produce low-stiffness wood, important to provide flexibility in wind. Further experiments to study the behaviour of more species, with more individuals per species, growing across a range of physical environments, are required.
ISSN: 1286-4560

hal-00644335
https://hal.archives-ouvertes.fr/hal-00644335
https://hal.archives-ouvertes.fr/hal-00644335/document
https://hal.archives-ouvertes.fr/hal-00644335/file/McLean_al.pdf
DOI : 10.1007/s13595-011-0085-z

Éditeur(s) : HAL CCSD
Résumé : For their survival, plants need to grow in height to access light resource while ensuring their mechanical stability. Growth in height amplifies the mechanical constraints due to wind and gravity. Nevertheless these constraints represent morphogenetic signals that plants respond to by modifying their growth. There are two regulatory processes of growth by mechanical signals: thigmomorphogenesis and gravitropism. Thigmomorphogenesis expresses by a reduction of growth in height and an increase of growth in girth under the effect of mechanical signals. This is a way for plants to grow with controlling slenderness of their axes to avoid buckling (beating down). In some cases (storm, sudden exposure to a new mechanical environment) this process is not sufficient to prevent buckling, gravitropism then acts to restore axes orientation in case of no lethal buckling. With measuring several traits, we have demonstrated that these processes have a fundamental ecological role in the control of tree habit and the vertical structuration of ecosystems. As studies of climate changes seem to predict a higher frequency of storms it is important to study the diversity of their efficiency.
Colloque Adaptation au Changement Climatique de l'Agriculture et des Ecosystèmes

hal-00797377
https://hal.archives-ouvertes.fr/hal-00797377

Résumé : Cette thèse concerne la modélisation des dynamiques de maladies foliaires de cultures pérennes tropicales à différentes échelles spatiales. Cette approche de modélisation est appliquée à la cercosporiose noire du bananier. Il s’agit d’explorer et de déterminer les paramètres environnementaux et de résistance de l’hôte ayant une influence significative sur la dynamique spatiotemporelle de la maladie et d’apporter des éléments associés au contrôle de la cercosporiose noire.Deux modèles ont été développés dans le cadre de cette thèse. La dynamique épidémiologique au niveau de la plante est décrite par un modèle mécaniste décomposé en un modèle de croissance de la plante et un module épidémiologique décrivant le cycle épidémique du pathogène. L’architecture du bananier est prise en compte par le biais de compartiments foliaires positionnés dans l’espace. Le modèle a été validé par un jeu de données indépendant. Les expérimentations numériques et l’analyse de sensibilité du modèle réalisées par les méthodes de Morris et de e-FAST ont permis de mieux comprendre le fonctionnement épidémique de cette maladie et d’identifier les paramètres influant le plus la dynamique épidémique en particulier la vitesse d’extension des lésions, la durée d’incubation et l’efficacité d’infection .L’approche bayésienne a permis de prendre en compte l’information a priori disponible pour ces trois paramètres sur lesquels a porté l’inférence statistique. L’analyse de sensibilité du modèle a également permis d’identifier l’influence de deux paramètres liés à la croissance de la plante : le nombre de feuilles sur une plante et le rythme d’émission foliaire Un modèle de dynamique spatio-temporelle de la cercosporiose noire a été développé à l’échelle d’un territoire à partir d’enquêtes effectuées enMartinique pendant la période d’invasion de cette maladie de septembre 2010 à mai 2012. Les données récoltées étant censurées, l’inférence des paramètres du modèle a été réalisée dans un cadre bayésien en utilisant un algorithme d’augmentation de données. Le modèle et l’inférence développés permettent de reconstruire la dynamique spatio-temporelle de l’invasion et de prédire la fin d’invasion sur le territoire.Les deux modèles de dynamiques spatio-temporelles développés à deux échelles spatiales différentes ont permis d’acquérir des informations importantes pour construire des outils de conception de méthode de contrôle de la cercosporiose noire des bananiers.
This thesis concerns the modeling of the dynamics of foliar diseases of tropical tree crops at different spatial scales. This modeling approach is applied to black Sigatoka of banana. It is to explore and determine the environmental parameters and host resistance has a significant influence on the spatiotemporal dynamics of the disease and to provide elements associated with the control of Sigatoka noire.Deux models were developed as part of this thesis. The epidemiological dynamics at the plant is described by a mechanistic model decomposed into a growth model of the plant and an epidemiological unit describing the pathogen epidemic cycle. The architecture of the banana is taken into account through foliar compartments positioned in space. The model was validated by an independent data set. Numerical experiments and model sensitivity analysis performed by the methods of Morris and e-FAST enabled to better understand the functioning of this epidemic disease and identify the parameters affecting the most dynamic epidemic especially speed extension of the lesions, the incubation period and efficiency of Bayesian .L'approche infection allowed to take into account prior information available for these three parameters that were the statistical inference. The model sensitivity analysis also identified the influence of two parameters related to plant growth: the number of leaves on a plant and rate of leaf emission A dynamic model of space-time Black Sigatoka has been developed at the scale of a territory from surveys enMartinique during the period of invasion of the disease from September 2010 to May 2012. The data collected being censored, inference of model parameters has was performed in a Bayesian framework, using a data augmentation algorithm. The model developed and inference possible to reconstruct the spatiotemporal dynamics of the invasion and predict the end of the invasion territoire.Les two spatio-temporal dynamics models developed at two different spatial scales has been gained important information for build tools design method of control of black Sigatoka of banana.

http://www.theses.fr/2015AGUY0835/document

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
The 1415 m deep IODP Hole U1309D (Mid-Atlantic Ridge, 30 degrees N) is the second deepest hole drilled into slow spreading oceanic lithosphere. The recovered section comprises essentially gabbroic rocks, with a large range of compositions. The most primitive end-members of the gabbroic sequence, herein referred to as olivine-rich troctolites (ol > similar to 70%), have textures and geochemical compositions intermediate between that of mantle peridotites and primitive cumulates, indicative of melt impregnation processes. We carried out a detailed microstructural study to further characterize the petrogenetic processes leading to their formation, as well as discuss their mode of emplacement and relationship with neighboring mantle lithosphere. In olivine-rich troctolites, olivines range from coarse-grained subhedral crystals, commonly containing well-developed subgrains, to medium-grained rounded crystals with fewer or no substructures. They are embedded in large, undeformed pyroxene and plagioclase poikiloblasts. Olivine substructures reveal dislocation creep that is consistent with activation of the main high-temperature slip systems, dominantly (010)[100]. Olivine crystallographic preferred orientation is very weak but generally shows a relatively stronger, uncommon [001] concentration. These unusual olivine fabrics are interpreted as resulting from melt impregnation of a previously deformed olivine matrix: the solid olivine framework is disrupted by olivine corrosion along grain and subgrain boundaries, and the high-temperature plastic fabric is modified in a liquid-dominated regime. Based on mineral composition and fabrics and in comparison with what is observed in impregnated mantle rocks elsewhere, we posit that olivine represents relicts of mantle peridotites disaggregated by large melt influx, although the mantle origin of olivine is not unequivocally demonstrated yet. Whatever the initial lithology, impregnation by large volumes of melt has strongly modified the original composition and microstructure. If the mantle origin hypothesis is correct, the original olivine fabric could have been efficiently weakened by dunitization prior to disruption of the olivine framework by melt impregnation. Incorporation, at the base of the lithosphere, of small slivers of impregnated dunite into gabbroic sections, trapped between successive igneous units, may be a common mechanism of lower crustal accretion at slow spreading ridges. Extensive melt-rock interaction processes are expected to contribute significantly to the final chemical composition of erupted lavas.
ISSN: 1525-2027

hal-00496391
https://hal.archives-ouvertes.fr/hal-00496391
DOI : 10.1029/2009GC002995

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : The analysis of fine-scale spatial genetic structure (FSGS) within populations can provide insights into eco-evolutionary processes. Restricted dispersal and locally occurring genetic drift are the primary causes for FSGS at equilibrium, as described in the isolation by distance (IBD) model. Beyond IBD expectations, spatial, environmental or historical factors can affect FSGS. We examined FSGS in seven African and Neotropical populations of the late-successional rain forest tree Symphonia globulifera L. f. (Clusiaceae) to discriminate the influence of drift-dispersal vs. landscape/ecological features and historical processes on FSGS. We used spatial principal component analysis and Bayesian clustering to assess spatial genetic heterogeneity at SSRs and examined its association with plastid DNA and habitat features. African populations (from Cameroon and São Tomé) displayed a stronger FSGS than Neotropical populations at both marker types (mean Sp = 0.025 vs. Sp = 0.008 at SSRs) and had a stronger spatial genetic heterogeneity. All three African populations occurred in pronounced altitudinal gradients, possibly restricting animal-mediated seed dispersal. Cyto-nuclear disequilibria in Cameroonian populations also suggested a legacy of biogeographic history to explain these genetic patterns. Conversely, Neotropical populations exhibited a weaker FSGS, which may reflect more efficient wide-ranging seed dispersal by Neotropical bats and other dispersers. The population from French Guiana displayed an association of plastid haplotypes with two morphotypes characterized by differential habitat preferences. Our results highlight the importance of the microenvironment for eco-evolutionary processes within persistent tropical tree populations.
ISSN: 1932-6203

hal-01608324
https://hal.archives-ouvertes.fr/hal-01608324
DOI : 10.1371/journal.pone.0182515
PRODINRA : 403154
PUBMED : 28771629

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Serpentinization of the oceanic lithosphere contributes significantly to the geochemical cycle from spreading ridges to subduction zones. In situ trace element analysis of oceanic serpentinites from the Mid-Atlantic Ridge and the Greater Antilles (Cuba, Dominican Republic) shows that all serpentine minerals are enriched in fluid-mobile elements (FME: As, Sb, B, Li, Cs, Pb, U, Ba, Sr). We observe no loss of these elements from abyssal to subduction environments during prograde metamorphism. Moreover, the transition from lizardite/chrysotile to antigorite during subduction is marked by a strong over-enrichment in As and Sb in antigorite, indicating late contamination by a sedimentary source. This suggests that a second stage of serpentinization occurs in the earlier stages of subduction, when newly formed or reactivated normal faults ease fluid penetration, and/or in the subduction channel. Our study shows that, from spreading ridges to forearc environments, serpentines act as sponges for FME. We posit that, until ultimate antigorite breakdown, serpentinites efficiently transport significant amounts of FME down to great depths in the mantle.
ISSN: 0954-4879

insu-00603792
https://hal-insu.archives-ouvertes.fr/insu-00603792
DOI : 10.1111/j.1365-3121.2011.00995.x

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Adverse pregnancy outcomes entail a large health burden for the mother and offspring; a part of it might be avoided by better understanding the role of environmental factors in their etiology. Our aims were to review the assessment tools to characterize fecundity troubles and pregnancy-related outcomes in human populations and their sensitivity to environmental factors. For each outcome, we reviewed the possible study designs, main sources of bias, and their suggested cures. In terms of study design, for most pregnancy outcomes, cohorts with recruitment early during or even before pregnancy allow efficient characterization of pregnancy-related events, time-varying confounders, and in utero exposures that may impact birth outcomes and child health. Studies on congenital anomalies require specific designs, assessment of anomalies in medical pregnancy terminations, and, for congenital anomalies diagnosed postnatally, follow-up during several months after birth. Statistical analyses should take into account environmental exposures during the relevant time windows; survival models are an appropriate approach for fecundity, fetal loss, and gestational duration/preterm delivery. Analysis of gestational duration could distinguish pregnancies according to delivery induction (and possibly pregnancy-related conditions). In conclusion, careful design and analysis are required to better characterize environmental effects on human reproduction.
ISSN: 0193-936X

hal-01002724
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01002724
DOI : 10.1093/epirev/mxt011
PUBMED : 24363355

Éditeur(s) : HAL CCSD
Résumé : International audience
In the context of climate change, this study presents the ability of major/trace elements together with strontiumisotopes to trace back water paths at small scale and to deconvolve the geochemical signal of a small watershedsubject to intense flash floods episodes (Peyne, Hérault, France). Two small sub-basins draining distinct lithologiesin their heads (Plio-Villafranchian conglomerate versus Triassic gypsum-rich marls and dolomites) and the sameMiocene lithology downstream are investigated.Major elements and Ca/Na vs. Mg/Na ratios classically applied at large scale to distinguish carbonate from silicateweathering, allow here discriminating the three main lithologies from the two sub-basins. Trace elements Rband Sr coupled to calcium, also allow this lithological discrimination but in addition the Ca/Rb vs. Sr/Rb tracersappear to be much more discriminant for the various hydrological conditions. Thus, in combination with detailedlithological descriptions, they allow identifying the different facies that imprint the water signature through water-rock interaction according to the hydrological conditions.Strontium isotopes and Rb/Sr ratio, discriminate more precisely the drained lithologies of the 2 sub-basins. Firstly,the 87Sr/86Sr ratios allow identifying the nature of the lithologies and their main component(s) contributing to theSr budget in water and thus imprint the isotopic signature. Secondly, Sr isotopes evidenced two distinct Miocenefacies: the detritric faction (sandy marls), and the marine carbonates.The geochemical signatures of the brook samples draining both compartments were compared to the signatureof the Peyne River outlet just before the confluence into the Hérault River. It appears that the signature of thePeyne River, integrating all the water draining the basin, is relatively stable whatever the hydrological conditionsand mainly marked by the Miocene formations. Sr isotopes further highlight that this signature seems to resultfrom the mixing of both Miocene facies present in the lower part of the Peyne watershed, i.e. the sandy marls andthe carbonates. The typical signatures of the Plio-Villafanchian conglomerates and Triassic gypsiferous marls anddolomites of the headwaters of each sub-basin are completely hidden by the Miocene signatures. This should berelated to the large drainage area of the Miocene compared to other lithologies, despite the high solubility of thegypsum formations releasing large quantities of dissolved elements in solution.Understanding water paths at small scale is even more efficient when the geochemical approach is coupled with adetailed geological description. Indeed, the geochemical tracers are extremely dependent on the facies sequences(morphology) and of the soil nature (mineralogical composition), this is particularly sensitive at small scale.In the context of climate change increasing the intensity of rain events in the Mediterranean region, and resultingin catastrophic floods events (flash floods), tracing the origin of water contributing to the runoff is of primaryimportance and this must be investigated at small scale. Geochemical and isotopic fingerprinting thus constituteexcellent tools which can help to define the area of interest to be monitored in the framework of flood forecast andwarning networks
EGU General Assembly 2015
Vienne, Austria

hal-01118622
https://hal-brgm.archives-ouvertes.fr/hal-01118622

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Geochemical studies of primitive basalts have documented the presence of crustal-derived garnet pyroxenite in their mantle sources. The processes whereby melts with the signature of garnet pyroxenite are produced in the mantle are, however, poorly understood and somewhat controversial. Here we investigate a natural example of the interaction between melts of garnet pyroxenite derived from recycled plagioclase-rich crust and surrounding mantle in the Ronda peridotite massif. Melting of garnet pyroxenite at ∼1.5 GPa generated spinel websterite residues with MREE/HREE fractionation and preserved the positive Eu anomaly of their garnet pyroxenite precursor in whole-rock and clinopyroxene. Reaction of melts from garnet pyroxenite with depleted surrounding peridotite generated secondary fertile spinel lherzolite. These secondary lherzolites differ from common spinel lherzolite from Ronda and elsewhere by their lower-Mg# in clinopyroxene, orthopyroxene and olivine, lower-Cr# in spinel and higher whole-rock Al2O3, CaO, Sm/Yb and FeO⁎ at a given SiO2. Remarkably, secondary spinel lherzolite shows the geochemical signature of ghost plagioclase in the form of positive Eu and Sr anomalies in whole-rock and clinopyroxene, reflecting the transfer of a low-pressure crustal imprint from recycled pyroxenite to hybridized peridotite. Garnet pyroxenite melting and melt-peridotite interaction, as shown in the Ronda massif, may explain how the signature of subducted or delaminated crust is transferred to the mantle and how a garnet pyroxenite component is introduced into the source region of basalts. The efficiency of these processes in conveying the geochemical imprint of crustal-derived garnet pyroxenite to extruded lavas depends on the reactivity of pyroxenite melt with peridotite and the mantle permeability, which may be controlled by prior refertilization reactions similar to those documented in the Ronda massif. Highly fertile heterogeneities produced by pyroxenite-peridotite interaction, such as secondary spinel lherzolite in Ronda, may nucleate magmatic channels that remain chemically isolated from the ambient mantle and act as preferential pathways for melts with the signature of recycled crust.
ISSN: 0012-821X

hal-00814010
https://hal.archives-ouvertes.fr/hal-00814010
DOI : 10.1016/j.epsl.2012.11.047

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The presence of two regional seismic networks in southeastern France provides us high-quality data to investigate upper mantle flow by measuring the splitting of teleseismic shear waves induced by seismic anisotropy. The 10 three-component and broadband stations installed in Corsica, Provence, and western Alps efficiently complete the geographic coverage of anisotropy measurements performed in southern France using temporary experiments deployed on geodynamic targets such as the Pyrenees and the Massif Central. Teleseismic shear waves (mainly SKS and SKKS) are used to determine the splitting parameters: the fast polarization direction and the delay time. Delay times ranging between 1.0 and 1.5 s have been observed at most sites, but some larger delay times, above 2.0 s, have been observed at some stations, such as in northern Alps or Corsica, suggesting the presence of high strain zones in the upper mantle. The azimuths of the fast split shear waves define a simple and smooth pattern, trending homogeneously WNW–ESE in the Nice area and progressively rotating to NW–SE and to NS for stations located further North in the Alps. This pattern is in continuity with the measurements performed in the southern Massif Central and could be related to a large asthenospheric flow induced by the rotation of the Corsica–Sardinia lithospheric block and the retreat of the Apenninic slab. We show that seismic anisotropy nicely maps the route of the slab from the initial rifting phase along the Gulf of Lion (30–22 Ma) to the drifting of the Corsica–Sardinia lithospheric block accompanied by the creation of new oceanic lithosphere in the Liguro–Provençal basin (22–17 Ma). In the external and internal Alps, the pattern of the azimuth of the fast split waves follows the bend of the alpine arc. We propose that the mantle flow beneath this area could be influenced or perhaps controlled by the Alpine deep penetrative structures and that the Alpine lithospheric roots may have deflected part of the horizontal asthenospheric flow around its southernmost tip.
ISSN: 0040-1951

hal-00109313
https://hal.archives-ouvertes.fr/hal-00109313
https://hal.archives-ouvertes.fr/hal-00109313/document
https://hal.archives-ouvertes.fr/hal-00109313/file/barruol_TGRS_Tphy2004_hal.pdf
DOI : 10.1016/j.tecto.2004.08.002

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Leaf dark respiration (R-dark) represents an important component controlling the carbon balance in tropical forests. Here, we test how nitrogen (N) and phosphorus (P) affect R-dark and its relationship with photosynthesis using three widely separated tropical forests which differ in soil fertility.R-dark was measured on 431 rainforest canopy trees, from 182 species, in French Guiana, Peru and Australia. The variation in R-dark was examined in relation to leaf N and P content, leaf structure and maximum photosynthetic rates at ambient and saturating atmospheric CO2 concentration.We found that the site with the lowest fertility (French Guiana) exhibited greater rates of R-dark per unit leaf N, P and photosynthesis. The data from Australia, for which there were no phylogenetic overlaps with the samples from the South American sites, yielded the most distinct relationships of R-dark with the measured leaf traits.Our data indicate that no single universal scaling relationship accounts for variation in R-dark across this large biogeographical space. Variability between sites in the absolute rates of R-dark and the R-dark : photosynthesis ratio were driven by variations in N- and P-use efficiency, which were related to both taxonomic and environmental variability.
ISSN: 0028-646X

hal-01559483
https://hal.univ-lorraine.fr/hal-01559483
DOI : 10.1111/nph.13992

Résumé : L’ingénierie agroécologique vise à produire des savoirs actionnables, pour concevoir des systèmes de cultures économiquement et écologiquement performants, par la valorisation de régulations naturelles. Notre problématique est centrée sur la santé des cultures, et plus particulièrement sur la bactérie phytopathogène Ralstonia solanacearum, agent du flétrissement bactérien alors qu’une souche extrêmement agressive menace la production de tomates en plein champ en Martinique. La nécessité d’explorer et de développer des alternatives aux méthodes conventionnelles de protection des plantes (variétés résistantes, pesticides), actuellement inefficaces, invite à la mise en œuvre d’une démarche de conception innovante. Nos travaux montrent que la mobilisation d’une barrière rhizosphérique est une stratégie de régulation biologique alternative. Différents processus y contribuent, telle que la mycorhization, symbiose entre racines et champignons mycorhiziens à arbuscules, présents dans la plupart des sols. Nous montrons que la mobilisation de réseaux de mycorhizes indigènes à partir d’un sol agricole permet une mycorhization précoce de la tomate. De plus, l’association de plantes aux propriétés mycorhizotrophes et assainissantes en conditions contrôlées montre des effets bioprotecteurs partiels et ouvre de nouvelles perspectives de combinaisons entre processus. Ces combinaisons sont mobilisables par des leviers d’actions multi-scalaires. Nous avons produit une grille d’analyse générique de ces leviers d’action pour la conception, par des trajectoires d’innovation multidirectionnelles, de « systèmes de culture bioprotégés ». Dans le contexte agricole martiniquais, une démarche d’apprentissage permet en effet l’émergence d’une dynamique de co-conception de systèmes de cultures recourant aux plantes mycorhizotrophes. Nos travaux proposent des outils pour une exploration collective de nouvelles stratégies de gestion durable de la santé des cultures.
Agroecological engineering aims to produce actionable knowledge to design economically and environmentally efficient cropping systems, based on the exploitation of natural regulation mechanisms. Our issue is centered on crop health, especially on the plant pathogenic bacterium Ralstonia solanacearum (bacterial wilt agent), of which an extremely aggressive strain threatens field tomato production in Martinique. The need to explore and develop alternatives to conventional methods of plant protection (resistant varieties, pesticides), ineffective in our case, calls for the implementation of an innovative design approach. Our work shows that the protection of the roots via the formation of a self-sustaining rhizospheric barrier may be an alternative biological control strategy. Different processes contribute, such as mycorrhizal symbiosis between roots and arbuscular mycorrhizal fungi, which are present in most soils. We show that the mobilization of indigenous mycorrhizal networks from an agricultural soil allows early mycorrhization of tomatoes. In addition, the association of plants with mycorrhizal and sanitizing properties in controlled conditions showed partial bioprotective effects and opens up new prospects for combinations between processes. These combinations may be exploited in various ways. We produced a generic analysis grid of key levers to design "healthy cropping systems " through multi-directional innovation trajectories. In Martinique's agricultural context, a learning process allows the emergence of a dynamic co-design of cropping systems using mycorrhizal plants. Our work thus provides tools for collective exploration of new sustainable management strategies for crop health.

http://www.theses.fr/2015AGUY0828/document