Éditeur(s) : Edp Sciences S A
Résumé : The present work examines the usefulness of the combination of multivariate analyses and further one-way analysis of variance in the search for links between causes and effects in heterologous stimulation of spawning in fish. Stimulations with both 20 and 50 mu g . kg(-1) doses of [D Trp(6)] luteinizing hormone-releasing hormone analogue (LH-RHa) were effective in inducing and synchronizing spawning of red drum, Sciaenops ocellatus. Oocyte development monitoring using ovarian biopsy allowed treatment injections at different stages of maturation. The influence at stimulation time of female oocyte development state upon further development was shown. An interesting potential of second stimulation, leading to high quality spawns, was established and factors of success were identified. The best conditions for stimulation success were simultaneously late stage of oocyte development characterized by the beginning of oil droplet coalescence, high ovarian homogeneity quoted by the proportion of most developed oocytes in the biopsy sample, and low dose of hormone (20 mu g . kg(-1)) for both first and second stimulations.
Ce travail examine l’intérêt de la combinaison d’analyses multivariées et de l’analyse de variance à un facteur pour la recherche de liens au sein d’expérimentations aquacoles faisant intervenir une diversité de causes et d’effets. L’injection de l’analogue [D Trp6] de la gonado-libérine (LH-RHa) est efficace aux doses de 20 et 50 íg×kg–1 pour provoquer et synchroniser les pontes chez l’ombrine, Sciaenops ocellatus. Un suivi du développement ovocytaire par biopsie ovarienne permet en outre de réaliser des injections à différents stades de maturation et l’influence du stade ovocytaire de la femelle, au moment de la stimulation sur la qualité de la ponte, est ainsi mise en évidence. Un potentiel intéressant suite à une seconde stimulation aboutissant à des pontes de qualité, est établi et des facteurs de réussite sont identifiés. Les meilleures conditions pour le succès de la stimulation sont simultanément : le dernier stade de développement ovocytaire, caractérisé par le début de coalescence de la gouttelette lipidique, la forte homogénéité ovarienne représentant la proportion des ovocytes les plus développés au sein de l’échantillon obtenu par biopsie, la faible dose hormonale (20 íg×kg–1) à la fois pour les premières et les secondes stimulations.
Aquatic Living Resources (0990-7440) (Edp Sciences S A), 2000-01 , Vol. 13 , N. 1 , P. 19-27

Droits : 2000 Ifremer/Cnrs/Inra/Ird/Cemagref/Éditions scientifiques et médicales Elsevier SAS. All rights reserved
http://archimer.ifremer.fr/doc/00187/29875/28361.pdf
DOI:10.1016/S0990-7440(00)00137-6
http://archimer.ifremer.fr/doc/00187/29875/

Résumé : Árbol frutal de hasta 20 m, con copa densa, redondeada o elongada.. Hojas alternas, elípticas a obovadas, agudas o acuminadas en el ápice, cuneadas a redondeadas en la base, penninervadas. Panículas más cortas que las hojas, subterminales; flores perfectas, verdoso-amarillentas; lóbulos del cáliz pubescentes en ambas superficies. Fruto muy variable en forma, tamaño, color y calidad de la pulpa.
Arbre fruitier pouvant atteindre 20 m, tête dense, arrondie ou allongée. Feuilles alternes, elliptiques à obovales, aiguës ou acuminées à la pointe, cunéiformes à arrondies à la base, penninervées. Panicules plus courtes que les feuilles, subterminales; fleurs parfaites, vert-jaunâtres; lobes du calice pubescents sur les deux surfaces. Fruit très variable, drupe généralement ovale, écorce verte, pulpe molle renfermant une seule grande graine.
Tree 14-40 m high. Leaves alternate, simple, entire, elliptic to obovate, acute or acuminate at the tip, cuneate or rounded at the base, penninerved, 6-30 cm x 3.5-19 cm. upper surface glabrescent, lower surface glaucose; inflorescence axilary, compact or loose panicles; flowers perfect, greenish-yellowish, perianth segments 4-6 mm long; fruit a pear-shaped drupe, shiny, green or purplish, up to ca.15 cm long; seed fleshy, loose in the pericarp at maturity.
Originaria de América tropical, cultivada en las zonas tropicales y subtropicales.
Originaire d’Amérique tropicale, cultivée dans les zones tropicales et subtropicales.
Native to tropical America, cultivated in tropical and subtropical regio

http://www.tramil.net/fototeca/plant272

Résumé : Aux USA, et plus particulièrement en Caroline du sud, l'étude de la croissance de l'ombrine, a commencé dès 1947, à partir des populations naturelles retenues dans les marais salants (Lunts 1951, d'après Smith et al, 1985) puis se sont poursuivies (Theling and Loyacano 1976), également en Louisiane (Beckman et al, 1988 ; Boothby et Avault, 1971 ; Bass et Avault, 1975). En élevage, très peu de données existent sur les performances de croissance de cette espèce jusqu'à une taille commercialisable. Hopkins et al, (1987) fait part de quelques résultats en bassin de terre. Peu de travaux existent sur les besoins alimentaires de l'espèce (Daniels et Robinson, 1986 Williams et Robinson, 1988, Robinson, 1988). Dans le cadre du programme de mise au point technique de l'élevage de l'ombrine, l'acquisition des premières données zootechniques en grossissement est réalisée grâce aux élevages présentés dans le tableau 1: Les élevages 1 à 6 ont été menés chez des aquaculteurs . 2P et 2G sont issus d'un même élevage après tri. L'élevage 6 s'interrompt brutalement en juillet suite à une crise distrophique survenant en bassin de terre. Les élevages 7 et 8 sont des élevages de géniteurs (origine 1987 et 1985). Les géniteurs de l'élevage 8 sont utilisés au cours des expérimentations de maturation et de ponte (cf document 2). Les élevages 9 et 10 comparent l'effet de 2 aliments, à 37% et 54% de protéines respectivement...

Droits : 1990 Ifremer
http://archimer.ifremer.fr/doc/00132/24372/22385.pdf
http://archimer.ifremer.fr/doc/00132/24372/

Éditeur(s) : 10 th Meeting of the World Mariculture Society. Honolulu, January 1979
Résumé : Three shrimp species, Penaeus monodon, P. stylirostris (Panama and Mexican strains) and P. vannamei have matured and spawned in captivity at the Centre Océanologique du Pacifique (COP) laboratory. The shrimp, originally stocked as juveniles or postlarvae, were reared to adult size in tanks and ponds and have completed the cycle: F3 generation for P. monodon, F2 for P. stylirostris (Panama strain) and P. vannamei and F1 for P. stylirostris (Mexican strain). Maturation occurs naturally under our rearing conditions or is induced by unilateral eyestalk ablation. Details are given on mating behavior, ovarian development, number of spawnings, egg viability and maintenance of captive brood stock. Partial results so far obtained for P. monodon and P. stylirostris clearly show a reared brood stock could sustain a commercial hatchery. [NOT CONTROLLED OCR]

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1979/acte-4423.pdf
http://archimer.ifremer.fr/doc/00000/4423/

Éditeur(s) : Elsevier
Résumé : Until recently, it was considered impossible to feed newly hatched marine fish species with a compound diet. Substituting a compound diet for live prey was performed several weeks after hatching, depending on the species. Compound diets were well ingested at the early stage but larvae died with a gut full of food, suggesting that larvae were unable to digest the compound diet. The hypothesis was that younger larvae have insufficient digestive enzymes to thrive on compound diets, and that exogenous enzymes, provided from live prey, are necessary for early stages.The organogenesis of marine fish larvae is not completely achieved at hatching and histological studies have revealed that the anatomy of the digestive tract undergoes developmental changes over some weeks. Nevertheless, biochemical studies over 20 years have shown that most of the digestive enzymes are present in young larvae. Recent studies have provided better understanding of digestion mechanisms in larvae and have led to proposed dietary compositions meeting larvae nutritional requirements. Pancreatic digestive enzymes are detected before mouth opening. Their synthesis is not induced by diet ingestion, but secretory mechanisms in the pancreas, and so enzymatic action, become efficient chronologically after those of synthesis. Inadequate diets can delay the onset of secretion mechanisms. The ratio of secreted enzymes to total enzymes indicates the nutritional value of the diet ingested by the larvae.At the intestinal level, cytosolic enzymes, which are peptidases, exhibit high activity in the early stages, suggesting a high capacity in larvae to digest protein hydrolysate. Indeed, larvae growth and survival is improved by the incorporation of a moderate concentration of peptide or hydrolysate in the diet. Peptidase activity abruptly decreases around day 25 in sea bass, concurrent with an increase in enzymes of the brush border membranes. This corresponds to a normal maturation process of enterocytes. Compound diets can slightly delay the onset of this maturation process, and inadequate diet can prevent it, leading to near death of the larvae. A proper onset of the maturation process has been associated with high larvae survival.The early developmental stage larvae exhibit high hydrolytic capacity, related to their weight. Enzyme activity pattern is age-dependent, but can be modulated by diet composition. Thus, larvae have the ability to digest and thrive on compound diet, if this diet is well adapted. Larvae have different specificities in digestion and nutritional requirements when compared to juveniles. Taking these specificities into consideration, recent research has led to the formulation of a compound diet that was well adapted for larvae from mouth opening, and could totally replace live prey.
Aquaculture (0044-8486) (Elsevier), 2001-08 , Vol. 200 , N. 1-2 , P. 161-180

Droits : 2001 Elsevier Science B.V. All rights reserved
http://archimer.ifremer.fr/doc/2001/publication-447.pdf
DOI:10.1016/S0044-8486(01)00699-8
http://archimer.ifremer.fr/doc/00000/447/

Éditeur(s) : HAL CCSD
Résumé : The spectrin-based skeleton is an essential scaffold underlying different lipid bilayers in all animal cells. Spectrins (Sp), as giant extended flexible heterotetramers (αβ)2, constitute the filaments of this network, the nodes of which are cross-linked by actin filaments. The functions of the Sp-based skeleton, which are well defined in red blood cells (required for shape, resistance to shear stress and deformability) are less well understood in non-erythroid cells.The non-erythroid Sp might participate in the establishment and/or the maintenance of specialized membrane subdomains by accumulating integral membrane proteins (such as ionic channels, ionic pumps, receptors and cell adhesion molecules) as revealed by loss of the main non-erythroid β-Sp. However the effect of non-erythroid α-Sp are less well established. In mammals, α-Sp are encoded by two genes: one for αI-Sp mainly expressed in mature erythrocyte, the second one for αII-Sp which is expressed in all nucleated cells.In the pursuit of αII-Sp functions, we have checked the effect of αII-Sp knock down by siRNA melanoma human cell line. Our data revealed that spectrin depletion is associated with i) an arrest of cell cycle at G1 state ii) a loss of cell adhesion in spite of increase in some integrins iii) some modifications of actin organisation.
Le squelette dépendant de la spectrine, localisé sous la bicouche lipidique, est un échafaudage essentiel de toutes les cellules animales. La Spectrine (Sp), structure géante, robuste mais flexible d'hétéro tétramères (αβ)2, constitue les filaments de ce réseau, dont chaque nœud interagit avec des filaments d'actine. Les fonctions du squelette de Sp, qui sont bien définies dans le globule rouge (rôle dans sa forme, dans sa résistance aux forces de cisaillement et dans sa déformabilité) sont moins bien connues dans les cellules non-érythroïdes. La Sp non-érythroïde pourrait participer à l'établissement et/ou au maintien de sous-domaines membranaires spécialisés dans l'accumulation de protéines de membrane (telles que les canaux ioniques, les pompes ioniques, les récepteurs et les molécules d'adhérence) comme nous le font penser les invalidations de la Sp-β non-érythroïde. Cependant le rôle de la Sp-α non-érythroïde est moins bien établi. Chez les mammifères, la Sp-α est codée par deux gènes: un pour Sp-αI, principalement exprimée dans l'érythrocyte mature, le second pour Sp-αII qui est exprimée dans toutes les cellules nucléées. Pour étudier les fonctions de la Sp-αII, nous avons utilisé une approche de SiRNA sur des cellules de mélanome humain. Nos données montrent que la diminution de Sp-αII est associée à I) un arrêt en G1 du cycle cellulaire II) une perte d'adhérence des cellules malgré l'augmentation de quelques intégrines III) des modifications dans l'organisation du réseau d'actine.
https://tel.archives-ouvertes.fr/tel-00377569

Droits : info:eu-repo/semantics/OpenAccess
tel-00377569
https://tel.archives-ouvertes.fr/tel-00377569
https://tel.archives-ouvertes.fr/tel-00377569/document
https://tel.archives-ouvertes.fr/tel-00377569/file/these_210409_entiere.pdf
https://tel.archives-ouvertes.fr/tel-00377569/file/II-Spectrin_Is_Critical_for_Cell_Adhesion_and_Cell_Cycle.PDF

Éditeur(s) : HAL CCSD Wiley
Résumé :  
The forests in Cat Tien National Park, appear as a mosaic of different communities, distinct from each other with respect to their floristic and structural parameters. The objectives of this study are (1) to characterize the different formations occurring in the lowland part and (2) to identify the main successional trends in the area. Understanding forest succession is important for silviculture and restoration of forests and land rehabilitation, as adequate information on the ecological role of local species in the functioning of the forests is not available in Vietnam. Five plots (1 ha each) were established in the lowland part of Cat Tien National Park, where all the trees ≥ 10 cm d.b.h. (diameter at breast height) were located, measured and identified. A systematic sampling was made to assess the regeneration. Three plots (A, C and D) can be considered as secondary forests on the basis of their structural parameters. Plots A and C are dominated by Lagerstrmia calyculata and plot D by Dipterocarpus alatus. The other two plots can be regarded as mature forests. Plot B corresponds to a semideciduous formation dominated by Lagerstrmia calyculata and Fabaceae species, and plot E to an evergreen one dominated by dipterocarp species. The floristic composition of plots A and C will change in the future because dominant canopy species are rare or absent in regeneration. A correspondence analysis performed on the number of trees per species shows two kinds of successional trends: one from A to B on shallow and drier soils, and another from C to E on deeper and wetter soils.
ISSN: 0305-0270

hal-01032094
https://hal.archives-ouvertes.fr/hal-01032094
DOI : 10.1046/j.1365-2699.2000.00347.x

Éditeur(s) : HAL CCSD BioScientifica
Résumé : International audience
The general rules established from mammalian species for the regulation of spermatogenesis by gonadotropins may not be fully relevant in fish. Particularly, Fsh is as potent as Lh to stimulate steroidogenesis and the Fsh receptor is expressed in Leydig cells. In seasonal breeders, Fsh is likely the major gonadotropin involved in spermatogenesis onset and Lh is required to support spermatogenesis progression and gamete release. However, the genes that relay the action of Fsh and Lh have been poorly investigated in fish. The present study was aimed at identifying gonadotropin-dependent genes expressed in the testis during fish puberty. We cultured pubertal trout testicular explants for 96 h, with or without gonadotropin, and analyzed transcriptome variations using microarrays. Fsh and Lh had similar effects on a large group of genes while other genes were preferentially regulated by one or the other gonadotropin. We showed that most of the responsive genes were expressed in somatic cells and exhibited relevant patterns during the seasonal reproductive cycle. Some genes preferentially modulated by Lh could be involved in testicular cell fate (pvrl1 and bty) or sperm maturation (ehmt2 and racgap1) and will deserve further examination. Besides Fsh's effects on the steroidogenic pathway, our study demonstrates that Fsh coordinates relevant stimulatory and inhibitory paracrine factors known to regulate early germ cell proliferation and differentiation. Some of these genes belong to major regulatory pathways including the Igf pathway (igf1b/igf3 and igfbp6), the Tgfb pathway (amh, inha, inhba, and fstl3), the Wnt pathway (wisp1), and pleiotrophin (mdka).
ISSN: 0952-5041

inserm-00812401
http://www.hal.inserm.fr/inserm-00812401
DOI : 10.1530/JME-12-0197
PUBMED : 23045716

Éditeur(s) : HAL CCSD
Résumé : International audience
Astrocytes send out long processes that are terminated by endfeet at the vascular surface and regulate vascular functions as well as homeostasis at the vascular interface. To date, the astroglial mechanisms underlying these functions have been poorly addressed. Here we demonstrate that a subset of messenger RNAs is distributed in astrocyte endfeet. We identified, among this transcriptome, a pool of messenger RNAs bound to ribosomes, the endfeetome, that primarily encodes for secreted and membrane proteins. We detected nascent protein synthesis in astrocyte endfeet. Finally, we determined the presence of smooth and rough endoplasmic reticulum and the Golgi apparatus in astrocyte perivascular processes and endfeet, suggesting for local maturation of membrane and secreted proteins. These results demonstrate for the first time that protein synthesis occurs in astrocyte perivascular distal processes that may sustain their structural and functional polarization at the vascular interface.
Cell Discovery

hal-01545319
https://hal.archives-ouvertes.fr/hal-01545319
DOI : 10.1038/celldisc.2017.5

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : Environmental variables affect many processes of fish biology and their fluctuations are thought to be one of the main factors in variability of fish stocks. Recent work has shown that the variability of the environment in the frequency domain (i.e., the environmental noise) can interact with endogenous processes (e.g., density dependence) and affect fluctuations of animal populations. In this study, we investigate whether fluctuations of large pelagics' time series are affected by environmental noise and whether life-history traits of species modulate this response. By analysing several environmental variables and a large dataset of tuna and billfish catch per unit effort (CPUE) time series from the Atlantic, we show that in environments dominated by long-term fluctuations (i.e., red noise) CPUE time series were less variable and displayed smoother fluctuations. Furthermore, larger, slower-growing and later-maturing species were found to be more sensitive to changes of environmental noise than species with a shorter turnover rate. Our results suggest that environmental noise interacts with fish biology; understanding how it is integrated into biological processes might provide important insights to understand the responses of fish stocks dynamics to exploitation and environmental changes. (C) 2010 Elsevier Ltd. All rights reserved.
Progress In Oceanography (0079-6611) (Pergamon-elsevier Science Ltd), 2010-07 , Vol. 86 , N. 1-2 , P. 267-275

Droits : 2010 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00011/12230/9083.pdf
DOI:10.1016/j.pocean.2010.04.025
http://archimer.ifremer.fr/doc/00011/12230/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In this study, we report the cloning of three transcripts for leptin receptor in the European sea bass, a marine teleost of economic interest. The two shortest variants, generated by different splice sites, encode all functional extracellular and intracellular domains but missed the transmembrane domain. The resulting proteins are therefore potential soluble binding proteins for leptin. The longest transcript (3605 bp), termed sblepr, includes all the essential domains for binding and transduction of the signal. Thus, it is proposed as the ortholog for the human LEPR gene, the main responsible for leptin signalling. Phylogenetic analysis shows the sblepr clustered within the teleost leptin receptor group in 100% of the bootstrap replicates. The neuroanatomical localization of sblepr expressing cells has been assessed by in situ hybridization in brains of sea bass of both sexes during their first sexual maturation. At histological level, the distribution pattern of sblepr expressing cells in the brain shows no clear differences regarding sex or reproductive season. Transcripts of the sblepr have a widespread distribution throughout the forebrain and midbrain until the caudal portion of the hypothalamus. A high hybridization signal is detected in the telencephalon, preoptic area, medial basal and caudal hypothalamus and in the pituitary gland. In a more caudal region, sblepr expressing cells are identified in the longitudinal torus. The expression pattern observed for sblepr suggests that in sea bass, leptin is very likely to be involved in the control of food intake, energy reserves and reproduction
ISSN: 0016-6480

hal-01290500
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01290500
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01290500/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01290500/file/Leptin%20receptor%20gene%20in%20the%20European%20sea%20bass%20postprint.pdf
DOI : 10.1016/j.ygcen.2016.03.017

Éditeur(s) : HAL CCSD Springer-Verlag Berlin Heidelberg
Résumé : International audience
Reaction wood produces very peculiar maturation stresses at the tree periphery i.e. compressive stress or very high tensile stress, for compression and tension wood respectively, as compared to moderately high tensile stress for normal wood. This means that both its mechanical state and its mechanical and physical properties differ from normal wood. Compression wood shows big differences from normal wood in conifers, for all physical and mechanical properties: higher density and axial crushing strength (MOR) but lower modulus of elasticity (MOE), far higher axial (longitudinal) shrinkage but lower radial and tangential shrinkage, sometimes even lower than the axial shrinkage. For tension wood things are less simple and can vary a lot from hardwood species to species. Globally there are no systematic differences in density and transverse shrinkage, MOE tends to be a little higher while MOR is slightly lower. However, axial shrinkage is much higher for tension wood with a gelatinous layer (G layer) than normal wood due to the specific gel like organization of cellulose microfibrils in the G layer. For tension wood without a G layer(which is rather frequent) axial shrinkage in the first drying operation is around two times higher than in normal wood mainly because of a kind of hygro-thermal release of locked in maturation stress. Overall the very high tensile stress and stored elastic energy in tension wood lead to problemsin wood processing (end splitting and board warping), which is far less the case for compression wood. But due to the large difference in properties relative to normal wood, compression wood occurrence is always a big problem for the in service behaviour of timber, which is seldom the case for tension wood.
The biology of reaction wood

ISBN : 978-3-642-10813-6
hal-01135273
https://hal.archives-ouvertes.fr/hal-01135273

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Longmen Shan (Sichuan, China) is characterised by an unusual morphology which results from a Triassic prism tectonics and a more recent Neogene thick-skin thrusting. Among its specific features is the high elevation of the internal zones in continuity with the Songpan Garze fold-and-thrust belt (SG), which is associated with an abrupt 20 km Moho offset between the Sichuan Basin and the Tibetan plateau as revealed by the analysis of teleseismic data acquired by a dense seismic network. The jump in crustal thickness is located at the apex of the Wenchuan shear zone (WSZ) and marks the western boundary of the metamorphosed units of SG characterized by temperatures varying from 590 degrees C down to 300 degrees C as commonly observed in mature accretionary wedges. Both the structural style marked by intense shortening in tight kink folds and geophysical data suggest the presence of an horizontal discontinuity at similar to 15 km depth over a thick crust (similar to 63 km).;The Longmen Shan east of the WSZ is characterized by thick-skin detachment which thrusts the internal sedimentary units and the Proterozoic basement over the series of the Sichuan Basin deposited on a thinner crust of similar to 44 km thick. The major front is the Beichuan Fault Zone (BFZ) which brought the internal zones onto Triassic and Jurassic series with lower temperatures (less than 400 degrees C). Locally, temperatures of similar to 425 degrees C are found just below the klippes.;These results are in agreement with an original contact of the SG zone represented by an accretionary wedge of sediments thrusted over the margin of the continental crust of the Yangtze craton in the early stage (Indosinian) of the evolution. The present-day slow E-W component of the convergence, added to the difference in crustal thickness caused the Yangtze crust to indent the Songpan Tibetan crust which was softened by a high thermal regime. As a response the edge of the Tibet crust was inflated to the bottom (up to 70 km), whereas to the top, the crystalline massif were exhumed and pushed the deformation eastward as emerging and blind thrusts. This configuration reflects a moderate shortening of the crust which behaves as a soft thick material abutting the resistant and cold Yangtze crust.
ISSN: 0040-1951

hal-00534849
https://hal.archives-ouvertes.fr/hal-00534849
DOI : 10.1016/j.tecto.2010.03.018

Éditeur(s) : HAL CCSD Walter de Gruyter
Résumé : absent
Holzforschung

hal-01031939
https://hal.archives-ouvertes.fr/hal-01031939
DOI : 10.1515/HF.2005.057

Éditeur(s) : Caribbean & Latin American Aquaculture 2007, 6 - 9 novembre 2007, San Juan, Puerto Rico
Résumé : The Pacific blue shrimp Litopenaeus stylirostris was introduced in New Caledonia thirty years ago. Because of its high inbreeding, a SPF strain domesticated in Hawaii, genetically differentiated from the Caledonian strain, had to be imported. The two strains’ reproductive performances were compared at different periods and cross breedings were assessed. The average results show that Caledonian animals give twice as many nauplii than the Hawaiian animals. The best cross breeding is obtained with Caledonian male x Hawaiian female. A possible explanation is the later age or weight of maturity for the Hawaiian strain compared to the Caledonian strain, difference which could come from the geographical origins and/or the zootechnical and climatic domestication conditions.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00198/30881/29249.pdf
http://archimer.ifremer.fr/doc/00198/30881/

Éditeur(s) : HAL CCSD
Résumé : International audience
MOTIVATION: Imaging mass spectrometry (IMS) is a maturating technique of molecular imaging. Confidence in the reproducible quality of IMS data is essential for its integration into routine use. However, the predominant method for assessing quality is visual examination, a time consuming, unstandardized and non-scalable approach. So far, the problem of assessing the quality has only been marginally addressed and existing measures do not account for the spatial information of IMS data. Importantly, no approach exists for unbiased evaluation of potential quality measures. RESULTS: We propose a novel approach for evaluating potential measures by creating a gold-standard set using collective expert judgements upon which we evaluated image-based measures. To produce a gold standard, we engaged 80 IMS experts, each to rate the relative quality between 52 pairs of ion images from MALDI-TOF IMS datasets of rat brain coronal sections. Experts' optional feedback on their expertise, the task and the survey showed that (i) they had diverse backgrounds and sufficient expertise, (ii) the task was properly understood, and (iii) the survey was comprehensible. A moderate inter-rater agreement was achieved with Krippendorff's alpha of 0.5. A gold-standard set of 634 pairs of images with accompanying ratings was constructed and showed a high agreement of 0.85. Eight families of potential measures with a range of parameters and statistical descriptors, giving 143 in total, were evaluated. Both signal-to-noise and spatial chaos-based measures performed highly with a correlation of 0.7 to 0.9 with the gold standard ratings. Moreover, we showed that a composite measure with the linear coefficients (trained on the gold standard with regularized least squares optimization and lasso) showed a strong linear correlation of 0.94 and an accuracy of 0.98 in predicting which image in a pair was of higher quality. AVAILABILITY AND IMPLEMENTATION: The anonymized data collected from the survey and the Matlab source code for data processing can be found at: https://github.com/alexandrovteam/IMS_quality. CONTACT: theodore.alexandrov@embl.de
Bioinformatics (Oxford, England)

hal-01163754
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01163754
DOI : 10.1093/bioinformatics/btv266
PUBMED : 26072506

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : The fixation of carbon in tropical forests mainly occurs through the production of wood and leaves, both being the principal components of net primary production. Currently field and satellite observations are independently used to describe the forest carbon cycle, but the link between satellite-derived forest phenology and field-derived forest productivity remains opaque. We used a unique combination of a MODIS enhanced vegetation index (EVI) dataset, a wood production model based on climate data and direct litterfall observations at an intra-annual timescale in order to question the synchronism of leaf and wood production in tropical forests. Even though leaf and wood biomass fluxes had the same range (respectively 2.4 +/- 1.4 and 2.2 +/- 0.4 Mg C ha(-1) yr(-1)), they occurred separately in time. EVI increased with leaf renewal at the beginning of the dry season, when solar irradiance was at its maximum. At this time, wood production stopped. At the onset of the rainy season, when new leaves were fully mature and water available again, wood production quickly increased to reach its maximum in less than a month, reflecting a change in carbon allocation from short-lived pools (leaves) to long-lived pools (wood). The time lag between peaks of EVI and wood production (109 days) revealed a substantial decoupling between the leaf renewal assumed to be driven by irradiance and the water-driven wood production. Our work is a first attempt to link EVI data, wood production and leaf phenology at a seasonal timescale in a tropical evergreen rainforest and pave the way to develop more sophisticated global carbon cycle models in tropical forests.
ISSN: 1726-4170

hal-01268497
https://hal.archives-ouvertes.fr/hal-01268497
DOI : 10.5194/bg-10-7307-2013
PRODINRA : 256018

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Questions: Several studies have described aggregated spatial patterns in tropical tree species. This study investigates aggregate dynamics of Vouacapoua americana (Aublet), a climax species whose spatial pattern is not simply related to light and soil conditions or to its short seed dispersal range. Location: Two rain forest sites: Nouragues and Paracou, in the Guiana Shield. Methods: We described the spatial pattern of tree locations and spatial autocorrelation of tree diameters, using statistics derived from Ripley's K. We particularly used methods to define analysis subplots according to local density or local mean diameter. We investigated relationships between spatial distributions of adults and saplings. Results: At both sites, populations of Vouacapoua demonstrated several nested levels of aggregation. Tree diameters were spatially autocorrelated, revealing the existence of clusters with similar diameters. In the largest aggregates, tree diameters declined from the centre to the edge. Regeneration was aggregated and occurred mainly at cluster edges and around rare isolated trees, and sapling densities and basal area of adults were negatively correlated. We show that long-distance dispersal events are rare. Conclusions: Environmental factors and seed dispersal only explain part of the observed spatial patterns. We provide two main hypotheses about Vouacapoua population dynamics. First, the lack of regeneration in aggregate centres results in the ageing of existing aggregates. We suggest that this lack of recruitment close to mature trees is due to a Janzen-Connell effect. However, aggregates can continue to grow along colonization fronts. Second, long-distance dispersal events allow the formation of new clusters and play a crucial role in the colonization process. We investigate aggregate dynamics of Vouacapoua americana (Aublet) whose spatial pattern is not simply related to environmental conditions or to its seed dispersal. Regeneration does not occur in centers of aggregate of adults. We suggest that rare long-distance dispersal events and density-dependence predation of seeds and seedlings play a crucial role in formation of new clusters and structuration of larger aggregates.
ISSN: 1100-9233

hal-01502642
https://hal-agroparistech.archives-ouvertes.fr/hal-01502642
DOI : 10.1111/jvs.12080

Éditeur(s) : HAL CCSD Presses Universitaires de la Méditerranée
Résumé : International audience
My reflection is about language practices in nurseries and pre elementary schools of Martinique. I am interested by noticing modalities about daily interactions in those areas, particularly by intentional distortions we can find in adult and child exchanges. Taking in consideration diversity from collected distortions is in opinion a prerequisite to dynamic of a necessary reciprocal comprehension for maturation of language and learning behaviors among small children in Martinique. This work proposes new patterns in a didactic agreement considering adult and child diversities. This agreement must offer to pupils and teachers favorable conditions to an active reciprocal understanding. That is moreover a contribution to reflection on a linguistic politic in context of cultural diversity.
Ma réflexion porte sur les pratiques langagières en cours dans les crèches et les écoles maternelles martiniquaises. Je m'intéresse au repère des modalités relatives aux interactions quotidiennes dans ces espaces et plus précisément aux distorsions intentionnelles qui peuvent intervenir lors des échanges entre adultes et enfants. La prise en compte des diversités émanant des distorsions relevées constitue selon moi un préalable au développement d'une dynamique d'intercompréhension nécessaire à la maturation des conduites de langage et d'apprentissage parmi les tout petits en Martinique. Ce travail propose de nouvelles modalités dans le cadre d'un contrat didactique prenant en compte les diversités des enfants et des adultes. Ce contrat est appelé à offrir aux élèves et aux enseignants les conditions favorables à une intercompréhension active. Il s'agit par ailleurs d'apporter une contribution à la réflexion sur un politique linguistique inscrite dans un contexte de diversité culturelle.
ISSN: 2271-6092

hal-01658925
https://hal.univ-antilles.fr/hal-01658925
https://hal.univ-antilles.fr/hal-01658925/document
https://hal.univ-antilles.fr/hal-01658925/file/DISTORSIONS%20DANS%20LES%20INTERACTIONS%20ADULTES%20ENFANTS.pdf

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : Pearl culture industry represents one of the dominant business sector of French Polynesia. However, it still entirely relies on unpredictable spat collection success. Our aim was to assess the influence of natural plankton concentration fluctuations on maturation and spawning of the black lip pearl oyster Pinctada margaritifera, during a 4 months survey conducted in Ahe atoll lagoon. Plankton concentration was assessed by chlorophyll a extraction and by microscope counts while gonadic index, gonado-visceral dry weights and histology were used to measure pearl oysters reproduction activity. We found that (i) plankton concentration fluctuations were mainly related to wind regime, (ii) gametogenesis rate was mainly related to plankton concentration, (iii) spawning occurred when maximal gonad storage was reached. (iv) plankton concentration was the main spawning synchronizing factor. These results contribute explaining P. margaritifera spat collection variability in French Polynesian atoll lagoon. (C) 2012 Elsevier Ltd. All rights reserved.
Marine Pollution Bulletin (0025-326X) (Pergamon-elsevier Science Ltd), 2012 , Vol. 65 , N. 10-12 , P. 463-470

Droits : 2012 Elsevier Ltd. All rights reserved
http://archimer.ifremer.fr/doc/00101/21201/19697.pdf
DOI:10.1016/j.marpolbul.2012.03.027
http://archimer.ifremer.fr/doc/00101/21201/