Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : International audience
Background : This study examines the radial trend in wood stiffness of tropical rainforest trees. The objective was to determine if the type of growing environment (exposed plantation or dense primary forest) would have an effect on this radial trend. Methods : The axial elastic modulus of wood samples, representing a pith to bark cross-section, of six trees from several French Guianese species (two of Eperua falcata, one of Eperua grandiflora, two of Carapa procera and one of Symphonia gloubulifera) was measured using a dynamic "forced vibration" method. Results : Primary forest trees were observed to have a decrease in wood stiffness from pith to bark, whereas plantation trees, from the same genus or species, displayed a corresponding increase in wood stiffness. Juvenile wood stiffness appears to vary depending on the environment in which the tree had grown. Conclusion : We suggest that the growth strategy of primary forest trees is to produce wood resistant to selfbuckling so that the height of the canopy may be obtained with the maximum of efficiency. In contrast, the growth strategy of the trees growing in an exposed plantation is to produce low-stiffness wood, important to provide flexibility in wind. Further experiments to study the behaviour of more species, with more individuals per species, growing across a range of physical environments, are required.
ISSN: 1286-4560

hal-00644335
https://hal.archives-ouvertes.fr/hal-00644335
https://hal.archives-ouvertes.fr/hal-00644335/document
https://hal.archives-ouvertes.fr/hal-00644335/file/McLean_al.pdf
DOI : 10.1007/s13595-011-0085-z

Éditeur(s) : HAL CCSD
Résumé : International audience
Trees can control their shape and resist gravity thanks to their ability to produce wood under tensile stress. This stress is known to be produced during the maturation of wood fibres but the mechanism of its generation remains unclear. This study focuses on the formation of the secondary wall in tension wood produced in artificially tilted poplar saplings. Thickness of secondary wall layer (SL) and gelatinous layer (GL) were measured from cambium to mature wood in several trees sampled at different times after tilting. Measurements on wood fibres produced before tilting show the progressive increase of secondary wall thickness during the growing season. After the tilting date, SL thickness decreased markedly from normal wood to tension wood while the total thickness increased compared to normal wood, with the development of a thick GL. However, even after GL formation, SL thickness continues to increase during the growing season. GL thickening was observed to be faster than SL thickening. The development of the unlignified GL is proposed to be a low cost, efficient strategy for a fast generation of tensile stress in broadleaved trees.
IAWA journal / International Association of Wood Anatomists.

hal-01229277
https://hal.archives-ouvertes.fr/hal-01229277
https://hal.archives-ouvertes.fr/hal-01229277/document
https://hal.archives-ouvertes.fr/hal-01229277/file/AbediniClair-Iawa-TensionCellWallThickening_preprint_HAL.pdf
DOI : 10.1163/22941932-00000084

Éditeur(s) : HAL CCSD
Résumé : International audience
This study investigated the possibility of there being differences in respiratory muscle strength and endurance in elite and competition triathletes who have similar maximal oxygen uptakes (V_O2max) and ventilatory thresholds (Thvent). Five internationally-ranked elite, [mean (SD) age 23.8 (1.4) years] and six nationallyand regionally-ranked competition [age 21.1 (1.1) years] male triathletes performed two successive trials: first an incremental cycle test to assess V_O2max and Thvent and second 20 min of cycling followed by 20 min of running (C-R) at intensities higher than 85% V_O2max. Cardioventilatory data were collected every minute during the two trials, using an automated breath-by-breath system. Maximal expiratory and inspiratory (PImax) strength were assessed before and 10 min after C-R from the functional residual capacity. Respiratory muscle endurance was assessed 1 day before and 30 min after C-R by measuring the time limit (tlim). The results showed firstly that during C-R, the competition triathletes had significantly (P<0.05) higher minute ventilation [mean (SEM) 107.4 (3.1) compared to 99.8 (3.7) lÆmin-1], breathing frequency [44.4 (2.0) compared to 40.2 (3.4) Æmin-1] and heart rate [166 (3) compared to 159 (4) beatsÆmin-1] and secondly that after C-R, they had significantly lower PImax [127.1 (4.2) compared to 130.7 (3.0) cmH2O] and tlim [2:35 (0:29) compared to 4:12 (0:20) min] than the elite triathletes. We conclude that, despite similar V_O2max and Thvent, the competition triathletes showed less extensive adaptive mechanisms, including those in the respiratory muscles, than did the elite triathletes. This led to higher ventilation, which appeared to be the cause of the faster development of fatigue in the inspiratory muscles in this group.
EUROPEAN JOURNAL OF APPLIED PHYSIOLOGY

hal-00720562
https://hal.univ-antilles.fr/hal-00720562
https://hal.univ-antilles.fr/hal-00720562/document
https://hal.univ-antilles.fr/hal-00720562/file/BoussanaEJAP02_2_.pdf

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : Active mechanisms of re-orientation are necessary to maintain the verticality of tree stems. They are achieved through the production of reaction wood, associated with circumferential variations of three factors related to cambial activity: maturation strain, longitudinal modulus of elasticity (MOE) and eccentric growth. These factors were measured on 17 mature trees from different botanical families and geographical locations. Various patterns of circumferential variation of these factors were identified. A biomechanical analysis based on beam theory was performed to quantify the individual impact of each factor. The main factor of re-orientation is the circumferential variation of maturation strains. However, this factor alone explains only 57% of the re-orientations. Other factors also have an effect through their interaction with maturation strains. Eccentric growth is generally associated with heterogeneity of maturation strains, and has an important complementary role, by increasing the width of wood with high maturation strain. Without this factor, the efficiency of re-orientations would be reduced by 31% for angiosperms and 26% for gymnosperms. In the case of angiosperms, MOE is often larger in tension wood than in normal wood. Without these variations, the efficiency of re-orientations would be reduced by 13%. In the case of gymnosperm trees, MOE of compression wood is lower than that of normal wood, so that re-orientation efficiency would be increased by 24% without this factor of variations.
ISSN: 0931-1890

hal-01031825
https://hal.archives-ouvertes.fr/hal-01031825
DOI : 10.1007/s00468-005-0407-6

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
The tribologic properties of graphitized carbon blacks and their fluorinated derivatives are investigated as a function of the fluorination rate. Very low intrinsic friction coefficients are obtained for highly fluorinated compounds. The correlation of the tribologic results and structural investigations of the initial compounds by TEM strongly suggests that the friction mechanisms involve surface effects in the early stage of friction. Long-term tribologic experiments and Raman analyses point out an evolution of the structure and composition of the tribofilms during the friction process leading to similar friction properties of the tribofilms. Wear studies revealed that highly fluorinated derivatives appear less efficient than pristine and weakly fluorinated compounds.
ISSN: 1023-8883

hal-01121785
https://hal.archives-ouvertes.fr/hal-01121785
DOI : 10.1007/s11249-014-0406-0

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
Nowadays, technological advances in satellite imagery measurements as well as the development of dense geodetic and seismologic networks allow for a detailed analysis of surface deformation associated with active fault seismic cycle. However, the study of earthquake dynamics faces several limiting factors related to the difficulty to access the deep source of earthquake and to integrate the characteristic time scales of deformation processes that extend from seconds to thousands of years. To overcome part of these limitations and better constrain the role and couplings between kinematic and mechanical parameters, we have developed a new experimental approach allowing for the simulation of strike-slip fault earthquakes and analyze in detail hundreds of successive seismic cycle. Model rheology is made of multilayered visco-elasto-plastic analog materials to account for the mechanical behavior of the upper and lower crust and to allow simulating brittle/ductile coupling, postseismic deformation phase and far-field stress transfers. The kinematic evolution of the model surface is monitored using an optical system, based on subpixel spectral correlation of high-resolution digital images. First, results show that the model succeed in reproducing the deformation mechanisms and surface kinematics associated to the main phases of the seismic cycle indicating that model scaling is satisfactory. These results are comforted by using numerical algorithms to study the strain and stress distribution at the surface and at depth, along the fault plane. Our analog modeling approach appears, then, as an efficient complementary approach to investigate earthquake dynamics.
ISSN: 0278-7407

hal-01174176
https://hal.archives-ouvertes.fr/hal-01174176
DOI : 10.1002/2014TC003701

Éditeur(s) : HAL CCSD
Résumé : International audience
Despite their dynamic nature, certain chromatin marks must be maintained over the long term. This is particulary true for histone 3 lysine 9 (H3K9) trimethylation, that is involved in the maintenance of healthy differentiated cellular states by preventing inappropriate gene expression, and has been recently identified as the most efficient barrier to cellular reprogramming in nuclear transfer experiments. We propose that the capacity of the enzymes SUV39H1/2 to rebind to a minor fraction of their products, either directly or via HP1α/β, contributes to the solidity of this mark through (i) a positive feedback involved in its establishment by the mutual enforcement of H3K9me3 and SUV39H1/2 and then (ii) a negative feedback sufficient to strongly stabilize H3K9me3 heterochromatin in post-mitotic cells by generating local enzyme concentrations capable of counteracting transient bursts of demethylation. This model does not require direct molecular interactions with adjacent nucleosomes and is favoured by a series of additional mechanisms including (i) the protection of chromatin-bound SUV39H1/2 from the turnovers of soluble proteins, which can explain the uncoupling between the cellular contents in SUV39H1 mRNA and protein; (ii) the cooperative dependence on the local density of the H3K9me3 of HP1α/β-dependent heterochomatin condensation and, dispensably (iii) restricted enzyme exchanges with chromocenters confining the reactive bursts of SUV39H1/2 in heterochromatin. This mechanism illustrates how seemingly static epigenetic states can be firmly maintained by dynamic and reversible modifications. © 2016 Elsevier B.V.
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms

hal-01467548
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01467548
DOI : 10.1016/j.bbagrm.2016.11.006
PUBMED : 27876670

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : We designed a thermo-mechanical numerical model for fast-spreading mid-ocean ridge with variable viscosity, hydrothermal cooling, latent heat release, sheeted dyke layer, and variable melt intrusion possibilities. The model allows for modulating several accretion possibilities such as the "gabbro glacier" (G), the "sheeted sills" (S) or the "mixed shallow and MTZ lenses" (M). These three crustal accretion modes have been explored assuming viscosity contrasts of 2 to 3 orders of magnitude between strong and weak phases and various hydrothermal cooling conditions depending on the cracking temperatures value. Mass conservation (stream-function), momentum (vorticity) and temperature equations are solved in 2-D cartesian geometry using 2-D, alternate direction, implicit and semi-implicit finite-difference scheme. In a first step, an Eulerian approach is used solving iteratively the motion and temperature equations until reaching steady states. With this procedure, the temperature patterns and motions that are obtained for the various crustal intrusion modes and hydrothermal cooling hypotheses display significant differences near the mid-ocean ridge axis. In a second step, a Lagrangian approach is used, recording the thermal histories and cooling rates of tracers travelling from the ridge axis to their final emplacements in the crust far from the mid-ocean ridge axis. The results show that the tracer's thermal histories are depending on the temperature patterns and the crustal accretion modes near the mid-ocean ridge axis. The instantaneous cooling rates obtained from these thermal histories betray these discrepancies and might therefore be used to characterize the crustal accretion mode at the ridge axis. These deciphering effects are even more pronounced if we consider the average cooling rates occurring over a prescribed temperature range. Two situations were tested at 1275-1125 °C and 1050-850 °C. The first temperature range covers mainly the crystallization range that is characteristic of the high temperature areas in the model (i.e. the near-mid-oceanic-ridge axis). The second temperature range corresponds to areas in the model where the motion is mainly laminar and the vertical temperature profiles are closer to conductive. Thus, this situation results in less discriminating efficiency among the crustal accretion modes since the thermal and dynamic properties that are described are common to all the crustal accretion modes far from the ridge axis. The results show that numerical modeling of thermo-mechanical properties of the lower crusts may bring useful information to characterize the ridge accretion structure, hydrothermal cooling and thermal state at the fast-spreading ridges and may open discussions with petrological cooling rate results.
ISSN: 1991-959X

hal-00907012
https://hal.archives-ouvertes.fr/hal-00907012
DOI : 10.5194/gmd-6-1659-2013

Éditeur(s) : HAL CCSD ACM New York, NY, USA
Résumé : International audience
This paper focuses on the study of the behavior of a genetic algorithm based classifier system, the Adapted Pittsburgh Classifier System (A.P.C.S), on maze type environments containing aliasing squares. This type of environment is often used in reinforcement learning litterature to assess the performances of learning methods when facing problems containing non markov situations. Through this study, we discuss on the performances of the APCS on maze type environments and also of the efficiency of an improvement of the APCS learning method inspired from the XCS : the covering mechanism. We manage to show that, without any memory mechanism, the APCS is able to build and to keep accurate strategies to produce regular sub-optimal solutions to these maze problem. This statement is shown through a comparison of the results obtained by the XCS, XCSM and XCSMH on distinct maze problems with these obtained by the APCS.
Proceedings of the 2008 GECCO conference companion on Genetic and evolutionary computation
Atlanta, GA, United States

hal-00520607
https://hal.archives-ouvertes.fr/hal-00520607
DOI : 10.1145/1388969.1389013

Éditeur(s) : HAL CCSD Société géologique de France
Résumé : U-Pb ages obtained from detrital zircon from terrigenous sediments are used to determine the sources. Present fluvial sand-bars of the Ogooue river yield age spectra of detrital zircons in agreement with Archean and Early Proterozoic Sources found in the drainage. The large proportion of Late Proterozoic zircons cannot be derived from primary erosion of the watershed basement rocks, since there is no formation of that age in the area. This later group of zircons is in good agreement with reworking of the aeolian Paleogene Bateke Sands, by regressive erosion in the upper reaches of the Ogooue river, as they contain a majority of Late Proterozoic age zircons. The sources of Late Proterozoic zircons in the Bateke Sand are very distant, and transported and reworked - at least in part - by aeolian processes. Our results, together with the widely distributed Paleogene sediments over continental Africa, suggests that Paleogene was it time of subdued erosion of the cratonic areas and extensive reworking, transport and deposition within continental Africa. In contrast, our results from the Ogooue river indicate active present incision of the cratonic area, erosion of the previous continental sediments, and export of the river bed-load to the continental margin. This temporal evolution of erosion-transport-deposition is correlated with the drastic climate change that occurred during the Cenozoic, leading to a more efficient mechanical erosion, and it correlates with the increase of terrigenous flux to the margin, observed during the Neogene.
EISSN: 1777-5817

hal-00411165
https://hal.archives-ouvertes.fr/hal-00411165
DOI : 10.2113/gssgfbull.179.1.29

Éditeur(s) : HAL CCSD EDP Sciences
Résumé : International audience
Understanding mechanisms in DSSCs is fundamental for their improvement; this includes the nanocrystalline semiconducting layer behaviour. Different mesoporous TiO2 layers are fabricated and analyzed for possible use in DSSC solar cells. The preparations included the addition of P123 triblock copolymer as structuring agent to the synthesized anatase sol. This preparation was also mixed with Degussa P25 TiO2 nanoparticles in one case and polystyrene latex in another. Mesoporous mixed TiO2-SiO2 thin layers were also analyzed. The diverse morphologies and features are studied by microscopic techniques and by means of spectral quantum efficiency of a photoelectrochemical cell (PEC) that uses as photoelectrode the unsensitized porous TiO2 layer. Contact angle measurements are also performed. We have found that a very high specific area due to very small nanocrystals and small pores can hinder electrolyte penetration in the pores formed by TiO2 nanograins, affecting photoelectrodes efficiency. © EDP Sciences, 2015.
ISSN: 1286-0042

hal-01683213
https://hal.univ-antilles.fr/hal-01683213
DOI : 10.1051/epjap/2015150221

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Secondary migration is defined as the movement of hydrocarbons through relatively permeable rocks from source to trap: a two-phase flow within a porous medium. Depending on the geometry and capillary pressure distributions of carrier beds, secondary migration has both vertical and lateral components. The present paper focuses on that part of the migration where the movement is mainly vertical. Its objective is to propose a description of the dynamics governing the vertical part of secondary migration based on the main physical aspects of two-phase flow in a homogeneous porous medium. The study is illustrated by laboratory observations performed in a vertical, 2-D Hele-Shaw cell filled with a transparent porous medium where the flow of dyed oil invading a wetting fluid is visually observed. These observations help us to understand the effect of buoyant, capillary and viscous forces on the resulting flow, the relative importance of which is characterized by non-dimensional numbers. Extrapolating these observations to natural media, it is proposed that vertical secondary migration can be described as a percolation of disconnected and vertically-elongated stringers. These stringers do not move continuously but as a succession of snap-off and re-feeding events which result in a jerky upward movement. Using parameters characterizing the physical properties of the fluid and of the porous medium, the geometry and the dynamic behavior of the stringers are estimated. The width of stringers occurring during secondary migration in geological media is centimetric and their vertical size ranges from several centimeters to a few meters. An upper limit of the mean upward velocity of stringers is proposed, as well as an estimate of their spatial density and of the minimum, average horizontal distance (decametric) between two stringers. The stringers are sparsely distributed, resulting in a low average oil loss and a high efficiency of the vertical migration process.
ISSN: 0264-8172

hal-00831370
https://hal.archives-ouvertes.fr/hal-00831370
https://hal.archives-ouvertes.fr/hal-00831370/document
https://hal.archives-ouvertes.fr/hal-00831370/file/pekins-V-edited.pdf
DOI : 10.1016/j.marpetgeo.2013.04.020

Éditeur(s) : HAL CCSD American Society for Biochemistry and Molecular Biology
Résumé : International audience
2-Amino-9H-pyrido[2,3-b]indole (AαC) is a carcinogenic heterocyclic aromatic amine (HAA) that arises in tobacco smoke. UDP-glucuronosyltransferases (UGTs) are important enzymes that detoxicate many procarcinogens, including HAAs. UGTs compete with P450 enzymes, which bioactivate HAAs by N-hydroxylation of the exocyclic amine group; the resultant N-hydroxy-HAA metabolites form covalent adducts with DNA. We have characterized the UGT-catalyzed metabolic products of AαC and the genotoxic metabolite 2-hydroxy-amino-9H-pyrido[2,3-b]indole (HONH-AαC) formed with human liver microsomes, recombinant human UGT isoforms, and human hepatocytes. The structures of the metabolites were elucidated by 1H-NMR and mass spectrometry. AαC and HONH-AαC underwent glucuronidation, by UGTs, to form, respectively, N2-(β-D-glucosidurony1)-2-amino-9H-pyrido[2,3-b]indole (AαC-N2-Gl) and N2-(β-D-glucosidurony1)-2-hydroxyamino-9H-pyrido[2,3-b]indole (AαC-HON2-Gl). HONH-AαC also underwent glucuronidation to form a novel O-glucuronide conjugate, O-(β-D-glucosidurony1)-2-hydroxyamino-9H-pyrido[2,3-b]indole (AαC-HN2-O-Gl). AαC-HN2-O-Gl is a biologically reactive metabolite that bound to calf thymus DNA (pH 5.0 or pH 7.0) to form the N-(deoxyguanosin-8-yl)-AαC (dG-C8-AαC) adduct at 20 to 50-fold higher levels than the adduct levels formed with HONH-AαC. Major UGT isoforms were examined for their capacity to metabolize AαC and HONH-AαC. UGT1A4 was the most catalytically efficient enzyme (Vmax/Km) at forming AαC-N2-Gl (0.67 μL mg protein-1 min-1), UGT1A9 was most catalytically efficient at forming AαC-HN-O-Gl (77.1 μL mg protein-1 min-1), whereas, UGT1A1 was most efficient at forming AαC-HON2-Gl (5.0 μL mg protein-1 min-1). Human hepatocytes produced AαC-N2-Gl and AαC-HN2-O-Gl in abundant quantities, but AαC-HON2-Gl was a minor product. Thus, UGTs, usually important enzymes in the detoxication of many procarcinogens, serve as a mechanism of bioactivation of HONH-AαC.
Journal of Biological Chemistry

hal-00688369
https://hal.archives-ouvertes.fr/hal-00688369
DOI : 10.1074/jbc.M111.320093
PUBMED : 22393056

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The processes active in the deep crust above an oceanic subduction zone during its evolution have been constrained through a detailed geochemical study (major and trace elements and Sr, Nd and Pb isotopes) of representative samples through an 30 km thick exhumed crustal section of the Cretaceous Kohistan oceanic island arc (Northern Pakistan). The use of both trace elements and radiogenic isotopes reveals two distinct geochemical suites (suites A and B) within the JijalPatanKiruKamila (JPKK) complex. Suite A is characterized by a progressive enrichment in Pb-207 and a decrease in Nd-143/Nd-144 with increasing La-N/Sm-N. Suite B has higher Pb-207/Pb-204 and lower Nd-143/Nd-144 ratios with approximately constant La-N/Sm-N. By combining trace elements with different partitioning behaviour it is demonstrated that there is an increasing contribution of the subduction component in the magmas with time. It is also possible to distinguish a slab component imprint carried by aqueous fluids from one corresponding to sediment melts. Intrusive granites are abundant in the upper levels of the JPKK section. All were generated at the arc root level (Jijal crustal section) during dehydration-melting of hornblende-rich plutonic rocks. A three-stage geodynamic model is proposed for the evolution of the arc over a period of 30 Myr. The first stage (117105 Ma) starts with the onset of subduction, which was followed by the building of the volcanic arc. The second stage (10599 Ma to 9691 Ma) corresponds to a major igneous event, which was characterized by abundant magma underplating and granulite-facies metamorphism at the arc base. Recycling of the residualcumulative lower crust into the convective asthenospheric mantle was efficient during this stage, and was probably related to thermo-mechanical erosion of the base of the crust. The last stage (9585 Ma) corresponds to a period of low magmatic activity, which marked the end of the intra-oceanic subduction. This is related to the formation of a cold blanket above the slab surface as a result of thermo-mechanical erosion of the cold walls of the subduction zone (i.e. the upper part of the slab and the base of the overriding plate), and corner flow dragging the cold material into the zone of melt generation. Ultimately, a voluminous magmatic pulse occurred around 85 Ma (forming the Chilas complex), before arccontinent collision.
ISSN: 0022-3530

hal-00420068
https://hal.archives-ouvertes.fr/hal-00420068
DOI : 10.1093/petrology/egp010

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Few studies have investigated the influence of environmental conditions on the within-treevariation in Eucalyptus wood traits. The genotype and environment effects and their interactionsinfluence the wood properties. Their evaluations are crucial to estimate the genotype values andto select with efficiency. Thus, the aim of this study was to better understand the effect ofground slope and wind speed on the spatial variation of basic density (ρ), stiffness (MOE) andmicrofibril angle (MFA) of Eucalyptus wood. Wood discs cut along the trunk were sampledfrom 150 six-year-old Eucalyptus grandis x E. urophylla hybrids growing in 3 contrastinggrowing conditions influenced by ground slope and wind regime. Near Infrared (NIR)calibrations previously developed for ρ, MOE and MFA were used to predict in our discs. 2-Dplots presenting the spatial variation of predicted wood traits were compared. The higher theground slope, the greater the magnitude of radial variation in ρ, principally in the medium zoneof the trunk. The spatial variation of wood stiffness seems to be sensitive to two environmentalconditions. The MFA radial decreases were more pronounced where the wind speed was higher.At the base and top of the trees, however, there was no significant effect of growing conditionson the radial variation of the wood properties considered here.
ISSN: 0931-1890

hal-01451896
https://hal.archives-ouvertes.fr/hal-01451896
https://hal.archives-ouvertes.fr/hal-01451896/document
https://hal.archives-ouvertes.fr/hal-01451896/file/Art_Gril_al_Spatial_variation_wood_density_2016.pdf
DOI : 10.1007/s00468-015-1327-8

Éditeur(s) : Elsevier
Résumé : Understanding of antimicrobial defence mechanisms of penaeid shrimp should help in the design of efficient strategies for the management and disease control in aquaculture. In this study, we have specifically analysed the expression in circulating hemocytes of antimicrobial peptides (AMPs) encoding genes, such as PEN2 and PEN3, ALF, crustin, lysozyme and a putative cysteine-rich peptide. We evidenced a relationship between the level of expression of some AMPs and the successful response of the shrimp, Litopenaeus stylirostris, to circumvent a pathogenic Vibrio penaeicida infection. Additionally, significant differences in some AMP transcript amounts are evidenced between control, non-selected shrimp line and the third generation breeding of shrimp selected for their survival to natural V. penaeicida infections. On the basis of these results, it will now be of great interest to determine if these AMPs are directly involved in the resistance of shrimp to infection or if they only reflect other acquired defence mechanisms which can confer a resistance. (C) 2008 Elsevier Ltd. All rights reserved.
Molecular Immunology (0161-5890) (Elsevier), 2008-07 , Vol. 45 , N. 12 , P. 3438-3445

Droits : 2008 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/2008/publication-4524.pdf
DOI:10.1016/j.molimm.2008.04.002
http://archimer.ifremer.fr/doc/00000/4524/

Éditeur(s) : HAL CCSD
Résumé : Gravitropism is a major process in vertical growth as it allows the positioning of plant in the gravity field and thus, for trees, it takes part in the light foraging strategies. Without any gravitropism, trees would adopt a weeping habit or fall on the ground due to the increasing with growth supported weight, especially at the advance regeneration stage (sapling stage) in the understorey, where tree are very slender and poorly stiff. Most of the gravitropic studies are made by physiologists in order to understand the process and thus are associated to complex laboratory methods (genetic engineering, anatomical studies, accurate 2D ou 3D measurements of form changes with time). In order to study the ecological relevance and the specific diversity of gravitropic performances in natural forests, we developed a framework that uses different kinds of datas. Synchronical analysis has been done i) at the population level in large sample of trees and ii) at the tree level from destructive measurement of the dissymmetry maturation strains known to be the main motor of the posture control reaction of trees. In both cases, biomechanical models allows to estimate some aspects of the dynamic gravitropic process. Diachronical analysis has been done in natural conditions on permanent plots, or in a more traditional way, by observing in greenhouse experiments the righting movements of plants artificially tilted. In the first case, the problem is the high variability of natural disturbances and the slowness of growth and movements in the dark understorey. The second choice allows a measurement of a capacity (i.e. the ability of the species to react in quite extreme conditions of verticality disturbance but good for growth light and nutrient conditions) that is more easy to analyse, but is maybe not so relevant for estimating the ecological strategy (some species could have developed a high efficience of gravitropic reaction in natural conditions by avoiding the mechanical disturbance or adapting the reaction to slow growth and changing environments in natural conditions). All approaches use the same basic biomechanical modelling, i) to analyse simultaneously the reaction and the disturbance (due to the weight increase) during growth, or ii) to combine different parameters (geometry, growth, weight, maturation strains) involved in shape changes and posture control. They give a classification of the species according to their gravitropic performances. Results on 15 species are discussed, with relation to shade-tolerance or avoidance.
6th Plant Biomechanics Conference
Cayenne, France

hal-00565956
https://hal.archives-ouvertes.fr/hal-00565956

Éditeur(s) : HAL CCSD Elsevier
Résumé : The uppermost mantle in back arc regions is the site of complex interactions between partial melting, melt percolation, and fluid migration. To constrain these interactions and evaluate their consequences on geochemical cycles, we carried out an in situ trace element and water study of a suite of spinel peridotite xenoliths from two regions of the Japan back arc system, Ichinomegata (NE Japan) and Oki-Dogo (SW Japan), using LA-ICPMS and FTIR spectrometry, respectively. This study provides the first full dataset of trace element and hydrogen compositions in peridotites including analyses of all their main constitutive silicate minerals: olivine, orthopyroxene and clinopyroxene. The Ichinomegata peridotites sample a LREE-depleted refractory mantle (Mg# olivine = 0.90; Cr# spinel = 0.07–0.23; Yb clinopyroxene = 7.8–13.3 × C1-chondrite, and La/Yb clinopyroxene = 0.003–0.086 × C1-chondrite), characterized by Th-U positive anomalies and constant values of Nb/Ta. The composition of the studied Ichinomegata samples is consistent with that of an oceanic mantle lithosphere affected by cryptic metasomatic interactions with hydrous/aqueous fluids (crypto-hydrous metasomatism). In contrast, the Oki-Dogo peridotites have low Mg# olivine (0.86–0.93) and a broad range of compositions with clinopyroxene showing “spoon-shaped” to flat, and LREE-enriched patterns. They are also characterized by their homogeneous compositions in the most incompatible LILE (e.g., Rb clinopyroxene = 0.01–0.05 × primitive mantle) and HFSE (e.g., Nb clinopyroxene = 0.01–2.16 × primitive mantle). This characteristic is interpreted as resulting from various degrees of melting and extensive melt-rock interactions. FTIR spectroscopy shows that olivine in both Ichinomegata and Oki-Dogo samples has low water contents ranging from 2 to 7 ppm wt. H2O. In contrast, the water contents of pyroxenes from Ichinomegata peridotites (113–271 ppm wt. H2O for orthopyroxene, and 292–347 ppm wt. H2O for clinopyroxene) are significantly higher than in Oki-Dogo peridotites (9–35 ppm wt. H2O for orthopyroxene, and 15–98 ppm wt. H2O for clinopyroxene). This indicates a relationship between melt-rock interaction and water concentrations in pyroxenes. Our study suggests that the water content of the Japan mantle wedge is controlled by the late melt/fluid/rock interactions evidenced by trace element geochemistry: a mechanism triggered by magma-rock interactions may have acted as an efficient dehydrating process in the Oki-Dogo region while the Ichinomegata mantle water content is controlled by slab-derived crypto-hydrous metasomatism.
ISSN: 0016-7037

hal-01553105
https://hal.archives-ouvertes.fr/hal-01553105
DOI : 10.1016/j.gca.2017.03.042

Éditeur(s) : HAL CCSD
Résumé : International audience
The main biological function of reaction wood is to act as “muscle” for trees, enabling them to control their posture and right stems when they are permanently disturbed from their set-point inclination by gravity or winds. The key property to achieve this function is the development of high mechanical stress during the formation of reaction wood cells, called “maturation strains”. Moreover, this function is basically performed through the asymmetric formation of wood (in quantity or quality) around the tree circumference. This asymmetry enables stems to bend upward or to compensate for the downward bending induced by gravity, as an asymmetric force associated to maturation strains creates a bending moment (i.e. one side of the stem “pulls” the other one). We will discuss the traits (cross sectional size and shape, wood features as G fibers or microfibril angle, eccentric growth even in usual or extreme cases as buttresses, total biomass growth and height of center of mass, stem lean and set-point angle) involved to understand how the posture control works. We will give simple formulas to estimate a “muscle efficiency” from biomechanical modeling. We will give practical methods to estimate all the involved traits, especially maturation strains from direct and indirect measurements, in peripheral functional wood or by retrospective dendrochronological analysis. Then, we will illustrate how tree stem tropisms and especially gravitropism, widely studied by physiologists, are key processes in natural ecosystems, through practical examples from tropical rainforest tree communities and regeneration of European mixed beech forests. Using the previous definition of postural control efficiency, we will show that the cross section size is rapidly a limiting factor, opposing the extreme strategies of flexible small stems, which bend easily but also right themselves quickly, to stiff big stems. Lastly, as wood in living trees ensures general storage, defence, vascular and skeletal functions, we will ask general questions about synergies and trade-offs between posture control and other functions.
Botany 2014 : new frontiers in botany
Boise, United States

hal-01627031
https://hal.archives-ouvertes.fr/hal-01627031

Éditeur(s) : Elsevier Science Bv
Résumé : The euryhaline white shrimp Litopenaeus vannamei lives in both coastal and oceanic areas through ontogeny. Its osmoregulation pattern and variations in its tolerance to salinity are partially known from several studies under different experimental conditions (developmental stages, salinities and acclimation procedures). Although L. vannamei is recognized as one of the most euryhaline penaeid species, with adults and juveniles exhibiting an hyper-hypo-osmoregulatory pattern and being able to tolerate a wide salinity range, little is known on larval and early postlarval strategies to cope with salinity fluctuations. In order to establish their euryhalinity range and to fully understand the ontogenetic changes in L. vannamei osmoregulatory pattern, we evaluated the effect of six salinities (5, 10, 20, 32, 45 and 60 psu) on 17 developmental stages by directly exposing them to experimental salinities and conducting observations during the next 48 hours. At 5 hours post osmotic shock (hps), all developmental stages survived (> 20%) in 20, 32 and 45 psu. The euryhalinity and osmoregulation pattern changed at some developmental stages of L. vannamei. The hyper-hypo osmoregulatory pattern exhibited by Juvenile and Adult appears to be established early in the first post-larval stage PL1 (ontogenetic osmoregulation pattern type 3), with higher tolerance to salinity variations observed in PL2, PL4 and PL22 suggesting that L. vannamei shows a progressive increase in the efficiency of osmoregulatory mechanism following last metamorphosis.
Aquaculture (0044-8486) (Elsevier Science Bv), 2014-02 , Vol. 422 , P. 261-267

Droits : 2013 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00169/28068/26283.pdf
DOI:10.1016/j.aquaculture.2013.11.034
http://archimer.ifremer.fr/doc/00169/28068/