![]() | Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits Auteur(s) : Goudenege, David Labreuche, Yannick Krin, Evelyne Ansquer, Dominique Mangenot, Sophie Calteau, Alexandra Medigue, Claudine Mazel, Didier Éditeur(s) : Nature Publishing Group Résumé : Vibrio nigripulchritudo is an emerging pathogen of farmed shrimp in New Caledonia and other regions in the Indo-Pacific. The molecular determinants of V. nigripulchritudo pathogenicity are unknown; however, molecular epidemiological studies have suggested that pathogenicity is linked to particular lineages. Here, we performed high-throughput sequencing-based comparative genome analysis of 16 V. nigripulchritudo strains to explore the genomic diversity and evolutionary history of pathogen-containing lineages and to identify pathogen-specific genetic elements. Our phylogenetic analysis revealed three pathogen-containing V. nigripulchritudo clades, including two clades previously identified from New Caledonia and one novel clade comprising putatively pathogenic isolates from septicemic shrimp in Madagascar. The similar genetic distance between the three clades indicates that they have diverged from an ancestral population roughly at the same time and recombination analysis indicates that these genomes have, in the past, shared a common gene pool and exchanged genes. As each contemporary lineage is comprised of nearly identical strains, comparative genomics allowed differentiation of genetic elements specific to shrimp pathogenesis of varying severity. Notably, only a large plasmid present in all highly pathogenic (HP) strains encodes a toxin. Although less/non-pathogenic strains contain related plasmids, these are differentiated by a putative toxin locus. Expression of this gene by a non-pathogenic V. nigripulchritudo strain resulted in production of toxic culture supernatant, normally an exclusive feature of HP strains. Thus, this protein, here termed 'nigritoxin', is implicated to an extent that remains to be precisely determined in the toxicity of V. nigripulchritudo. Isme Journal (1751-7362) (Nature Publishing Group), 2013-10 , Vol. 7 , N. 10 , P. 1985-1996 Droits : 2013 International Society for Microbial Ecology All rights reserved 1751-7362/13 http://archimer.ifremer.fr/doc/00160/27117/28369.pdf DOI:10.1038/ismej.2013.90 http://archimer.ifremer.fr/doc/00160/27117/ | Partager |
![]() | Assessment of tropical shrimp aquaculture impact on the environment in tropical countries, using hydrobiology, ecology and remote sensing as helping tools for diagnosis Auteur(s) : Fuchs, Jacques Martin, Jean-louis M. Populus, Jacques Résumé : After a period of rapid development of the sites (an increase in both reared surface area and production), tropical shrimp aquaculture is currently being faced with critical problems due to economical and ecological constraints. In many countries with favourable conditions for shrimp aquaculture such as indonesia or Vietnam, sites are often badly selected and/or over-exploited. This conducts to sorne extent to decreases or collapses in the production due to the difficulty in predicting the maximum production capacity of the sites. Furthermore, it appears that production sustainability depends on many factors among which socio-economy and ecolo gy are of prime importance.
The STD3 project titled « Assessment of tropical shrimp aquaculture impact on the environment in tropical countries using hydrobiology, ecology and remote sensing as helping tools for diagnosis )) was initiated in 1994, with the aim to study the sustainability of marine shrimp aquaculture in tropical areas, main! y Indonesia and Vietnam, through the following tasks: (i) improve site selection and study the impact of aquaculture on marine environments presenting a variable sensitivity to organic sewage, (ii) analyse the socio-economical aspects and profitability of the aquaculture industry and of common resources (iii) use remote sensing and geographical data bases for diagnosis and monitoring of site degradation (iv) reinforce the capacity of Asian
scientists through training.
Severa! aquaculture sites have been investigated in the Lampung region (South Sumatra, Indonesia), the Mekong delta (Vietnam) and on the West coast of New-Caledonia, providing a large range of typical ecosystems encountered in Asia and in the Pacifie, from coralline sites to coastal plains with mangrove and deltaic areas. The study concerned the spatial structure and seasonal influence of these ecosystems, the temporal variation during the course of the project (3 years) and the relation between the ecological structure and farm productions.
Remote sensing provides a synoptic vision over large land expanses. Severa! scenes were processed for landuse mapping using conventional classification techniques. Concerning water quality assessment, a general relation for the Java sea was found between image and field data in terms of total suspended matter. Applying this relation to a new site in Sumatra has provided an initial approach to water type and, together with land use mapping, a preliminary assessment of the suitability of the area to shrimp aquaculture development.
Socio-economic research has been focused on the identification ofneeds for collective action, including public policy, in the perspective of shrimp farming sustainability. The main concern is in the regulation of shrimp farming intensification and extensification at the scale of coastal ecosystemic entities in a common property resource management perspective. The common considered here is coastal water quality. Comparing the local development profiles and the institutional grounds for the design and implementation of collective management rules shows that variables such as land tenure system, farm owner socio-economic profile, social homogeneity or heterogeneity of the farmers are key factors to analyse the potential for sustainability. The defmition of
water quality and the possible means to ensure its collective management are discussed. The main conclusion is that the economie incentives to farming development are strong but there is no significant difference among traditional, semi-intensive and intensive systems in terms of economie efficiency or wealth distribution.
The description of the functioning of the different kinds of ecosystems make it possible to give an advice concerning the positioning of the activity inside the ecosystem, and furthermore to have a reference state in order to determine the impact of the activity on the coastal environnement. This impact can be summarized as an increase in the concentration of total suspended matt€?r, of particulate organic matter and of sulfate reducing bacterias. This organic ma~.er is either issued from rearing activities or from telluric origine, due to mangrove eradication when building the ponds.
An evaluation of the relationship existing between productivity and characteristics of each ecosystem bas been conducted by correlating ecological indicators data (concentration of total suspended matter, particulate organic matter, chlorophyll, percentage of pheopigments in total pigments and cyanobacteria and sulfatereducing bacteria in water and sediments) with the average production of the farms. This comparison lead to the compilation of a scale of observed production integrating the range of these environmental parameters with shrimp production levels, bound to facilitate the positioning of shrimp farming in relation with the confmement leve! of each ecosystem.
Lastly, ali geographie data originated from the various compartments of the study have been geo-referenced and loaded into a geographical information system. This allows to display any query made on spatial variables and their related statistical data, including the ir variations over the last few years and to reveal patterns and phenomena otherwise not obvious. Le programme mis en oeuvre par la DRV (Paris, CREMA-L'Houmeau, DELIAO Brest, COP Tahiti, GIE/RA Nouvelle Calédonie), dans le cadre d'un projet européen STD3 «(Sciences et Technique au Service du Développement», en collaboration avec l'Université de Montpellier II, l'Ecole Nationale d'Agronomie de Rennes, l'ITC (Hollande), l'Institut Océanographique de Nha Trang (Vietnam), le BADC de Jepara et le BPPT de Jakarta (Indonésie), avait pour but la mise au point de méthodes permettant d'améliorer la sélection des sites ainsi que le suivi du développement et de l'impact de l'aquaculture des crevettes Péneides en milieu tropical pour éviter la surexploitation. Quatre axes de recherche ont été défmis : a) identifier la nature et quantifier les rejets de déchets issus de ce type d'aquaculture, b) définir les caractéristiques écologiques des écosystèmes susceptibles d'accueillir l'activité aquacole et suivre leur évolution sous l'influence des rejets, c) déterminer l'influence de la gestion des fermes et des ressources (aspects économiques) sur les performances de productivité, d) déterminer la capacité de la télédétection comme outil de diagnostic d'impact à l'échelle de la région, e) mener un programme de formation d'étudiants et jeunes chercheurs Vietnamiens et Indonésiens. Droits : 1998 Ifremer http://archimer.ifremer.fr/doc/00132/24357/22357.pdf http://archimer.ifremer.fr/doc/00132/24357/ | Partager |
![]() | Géodiversité sous-marine de Nouvelle-Calédonie. 1ère partie Auteur(s) : Collot, Julien Patriat, Martin Rouillard, Pierrick Pelletier, Bernard Loubersac, Lionel Éditeur(s) : Neidine Editeurs Résumé : The object of this article is to offer a synthesis of the knowledge clarifying the originality and the diversity of the submarine geological formations of the New Caledonian EEZ. A reminder is given onto the geologic history of the region, based upon the dislocation of the Gondwana Continent, the opening of the Tasman Sea, the presence of submarine volcanism, the setting up of heavy peridotitic rocks, the building up of the Fairway and Lord Howe Ridges and of sedimentary basins, the formation of volcanic domes and sea-mounts or guyots, the subduction along the Vanuatu Trench, the uplift of the Loyalty Islands, the development of carbonated ptatforms around the islands etc.... Of this complex history ensues an exceptional submarine geo-diversity. After this presentation the article clarifies the methods and the tools used in marine geosciences to map, explore, observe, analyze, sample, that they are embarked or are autonomous, teleoperated or inhabited systems. A chapter describes the programs which were set up since about forty years and the results obtained as well as the scientific teams concerned with. In conclusion, based on the unpublished character of this geo-diversity, the article introduces the second text to come in a next issue of theTai Kona magazine, text which will focus on the scientific, economic (mineral resources), environmental (deep biodiversity) and risks (seismicity) challenges that are worn by one of the most original submarine geologic context in the world. L’objet de cet article est de proposer une synthèse des connaissances explicitant l’originalité et la diversité des formations géologiques sous-marines de la ZEE calédonienne. Un rappel est donné sur l’histoire géologique de la région basée sur la dislocation du continent Gondwana, l’ouverture de la Mer de Tasman, la présence de volcanisme sous-marin, la mise en place des péridotites, la formation des rides de Fairway et Lord Howe et de bassins sédimentaires, la formation de dômes et monts sous-marins ou guyots, la subduction le long de la fosse de Vanuatu, la surrection des Loyautés, la mise en place de plateformes carbonatées etc... De cette histoire complexe découle une géo-diversité sous-marine exceptionnelle. Après cette présentation l’article explicite les méthodes et les outils utilisés en géosciences marines pour cartographier, explorer, observer, analyser, prélever, qu’ils soient embarqués ou soient des systèmes autonomes, télé-opérés ou habités. Un chapitre décrit les programmes qui ont été mis en place depuis une quarantaine d’années et les résultats obtenus ainsi que les équipes scientifiques en place. En conclusion sur le constat du caractère inédit de cette géo-diversité, l’article introduit un deuxième texte à venir dans un prochain numéro de Tai Kona, texte qui se focalisera sur les enjeux scientifiques, économiques (ressources minérales), environnementaux (biodiversité profonde) et de risques (sismicité) portés par un contexte géologique sous-marin des plus originaux. Tai Kona (2269-7535) (Neidine Editeurs), 2014 , N. 8 , P. 48-57 Droits : 2014 Tai Kona http://archimer.ifremer.fr/doc/00194/30574/29098.pdf http://archimer.ifremer.fr/doc/00194/30574/ | Partager |
![]() | A white spot disease-like syndrome in the Pacific blue shrimp (Litopenaeus stylirostris) as a form of bacterial shell disease Auteur(s) : Goarant, Cyrille Brizard, Raphael Marteau, Anne-laure Éditeur(s) : Elsevier Résumé : In May 1997, some white lesions evoking the white spot syndrome disease were observed in Litopenaeus stylirostris broodstock in New Caledonia. The occurrence of these lesions was neither associated with mortality, nor with histological evidence of white spot syndrome baculovirus (WSBV), The evidence suggests that these lesions result from a form of bacterial disease and are associated with an increased bacterial flora on the outer surface of the cuticle, as well as an increased incidence throughout the molt cycle. A microscopic observation of these lesions allows them to be differentiated from WSBV-associated lesions. Aquaculture (0044-8486) (Elsevier), 2000-03 , Vol. 183 , N. 1-2 , P. 25-30 Droits : 2000 Elsevier Science B.V. All rights reserved http://archimer.ifremer.fr/doc/2000/publication-373.pdf DOI:10.1016/S0044-8486(99)00284-7 http://archimer.ifremer.fr/doc/00000/373/ | Partager Voir aussi New Caledonia white spot syndrome Aquaculture Pathogenic bacteria Shrimp culture Crustaceans Diseases Litopenaeus stylirostris Télécharger |
![]() | Les vagues scélérates Auteur(s) : Olagnon, Michel Loubersac, Lionel Aucan, Jerome Éditeur(s) : Neidine Editeurs Résumé : The present article introduces and defines what are the rogue or freak waves. After an historical reminder on the recent consideration of their existence, several events of waves having struck big or small ships or still the coastline are presented. A paragraph is dedicated to the scientific explanation of the phenomenon and the difference with other phenomenons such tsunamis or tidal bores is clarified. After a reminder of the international mobilization towards a forecast system, a conclusion focuses on events met in New Caledonian waters and analyzes more exactly testimonies related to this type of phenomenon by trying to clarify their causes. Le présent article introduit et définit ce que sont les vagues scélérates. Après un rappel historique sur la prise en compte récente de leur existence plusieurs cas de figure de vagues ayant frappé grands ou petits navires ou encore la côte sont présentés.Un paragraphe est consacré à l'explication scientifique du phénomène et la différence avec d'autres cas de figure tels les tsunamis ou les mascarets est explicitée. Après un rappel de la mobilisation internationale vers un système de prévision, une conclusion se focalise sur les cas de figure rencontrés dans les eaux calédoniennes et analyse plus précisément deux témoignages de ce type de phénomène en tentant d'en expliciter les causes. Tai Kona (2269-7535) (Neidine Editeurs), 2014-02 , N. 7 , P. 26-40 Droits : Tai Kona http://archimer.ifremer.fr/doc/00186/29724/28142.pdf http://archimer.ifremer.fr/doc/00186/29724/ | Partager |
![]() | A step toward the definition of ecological indicators of the impact of fishing on the fish assemblage of the Abore reef reserve (New Caledonia) Auteur(s) : Amand, Marion Pelletier, Dominique Ferrari, Jocelyne Kulbicki, Michel Éditeur(s) : EDP Sciences Résumé : Marine Protected Areas (MPA) are often contemplated as a tool for the sustainable management of exploited resources and ecosystem conservation. This paper proposes an approach to establish a statistical diagnostic of the effects of MPAs on fish assemblages, and define corresponding ecological indicators. This requires choosing relevant variables (abundance, diversity, demographic parameters..) and appropriate statistical methods. The study was based on data from the Abore reef Reserve in New Caledonia. Two sets of methods: 1-inferential linear models (ANOVA, GLM): 2- Partial Least Squares (PLS) methods of regression, were used to test the effects of this MPA. PLS enabled us to test simultaneously within a model, density, species richness, biomass and mean size variables of fish community to retain the most sensitive and relevant ones. Habitat variability was also taken into account in these models. Species were grouped according to several criteria: 1-feeding habit; 2- taxonomy; 3-mobility; 4-adult size; 5-demographic strategy. No significant effect of the opening of the Abore reef to fishing was found for mobility. Feeding habit was the only criterion for which the results from the inferential models and PLS showed a significant effect of reserve status for all variables. Species richness, density, and to a lesser extent mean size, were sensitive to the removal of reserve status. but not biomass. Results from ANOVA and PLS regression were consistent but the latter allows a more holistic approach as it integrates all variables within a single model. Les Aires Marines Protégées (AMP) sont de plus en plus considérées comme des mesures de gestion alternative permettant à la fois une gestion durable des ressources exploitées et la conservation des écosystèmes. Nous proposons une approche pour définir des indicateurs synthétiques et permettre un diagnostic statistique de l'effet des AMP sur les peuplements. Ce travail passe par le choix de variables pertinentes (abondance, richesse spécifique, paramètres démographiques, etc.) et de méthodes statistiques appropriées. Cette étude a été réalisée sur la réserve du récif Aboré en Nouvelle-Calédonie. Les données issues de deux campagnes scientifiques menées sur ce récif sont utilisées pour tester globalement l'effet des AMP grâce à des modèles linéaires inférentiels (ANOVA, GLM), et par des méthodes de régression PLS (Partial Least Squares). Ces dernières permettent de confronter dans un même modèle quatre variables (densité, richesse, biomasse et taille moyenne des poissons), afin de retenir les plus sensibles et les plus pertinentes pour l'évaluation de l'impact de la réserve. La variabilité de l'habitat est également prise en compte dans la modélisation. Les espèces sont regroupées selon plusieurs critères: 1- le régime alimentaire; 2- la taxonomie; 3- la mobilité; 4- des caractéristiques démographiques; 5- des caractéristiques de taille. Les espèces, quel que soit leur mobilité, n'apparaissent pas affectées par l'ouverture à la pêche du récif Aboré, qu'elles soient sédentaires ou très mobiles. Seul le critère trophique révèle un effet du changement de statut Réserve/Non Réserve pour toutes les variables, à la fois d'après les modèles inférentiels et les régressions PLS. Les résultats des modèles inférentiels et des régressions PLS montrent que la richesse spécifique et la densité sont les variables les plus sensibles à l'impact de l'ouverture à la pêche. La taille moyenne est également bien modélisée sur l'ensemble des résultats mais pas la biomasse. Les résultats d'ANOVA et de régression PLS sont cohérents mais la régression PLS permet d'intégrer toutes les variables dans un même modèle Aquatic Living Resources (0990-7440) (EDP Sciences), 2004-04 , Vol. 17 , N. 2 , P. 139-149 Droits : EDP Sciences, IFREMER, IRD 2004 http://archimer.ifremer.fr/doc/2004/publication-398.pdf DOI:10.1051/alr:2004022 http://archimer.ifremer.fr/doc/00000/398/ | Partager Voir aussi New Caledonia PLS regression Ecological indicators Fishing impact Coral reef Fish Marine Protected Areas Télécharger |
![]() | Melanesian futsal player characteristics Auteur(s) : Galy, Olivier Zongo, Paul Chamari, Karim Eric, Michalak Alexandre, Dellal Carlo, Castagna Hue, Olivier Auteurs secondaires : ESPE de la Nouvelle-Calédonie Adaptations au Climat Tropical, Exercice et Santé (ACTES) ; Université des Antilles et de la Guyane (UAG) Athlete Health and Performance Research Centre ; Qatar Orthopaedic and Sports Medicine Hospital Research Laboratory ‘’Sport Performance Optimization" ; National Centre of Medicine and Sciences in Sport (CNMSS), Tunis, Tunisia FIFA Medical Center of Excellence ; Centre Orthopedique Santy, Lyon, France Football Training and Biomechanics Laboratory ; Technical Department, Italian Football Federation (FIGC) Éditeur(s) : HAL CCSD PubMed Résumé : International audience This study assessed the anthropometric and physiological characteristics of elite Melanesian futsal players in order to determine the best performance predictors. Physiological parameters of performance were measured in 14 Melanesian (MEL-G, 24.4±4.4 yrs) and 8 Caucasian (NMEL-G, 22.9±4.9) elite futsal players, using tests of jump-and-reach (CMJ), agility (T-Test), repeated sprint ability (RSA), RSA with change-of-direction (RSA-COD), sprints with 5 m, 10 m, 15 m, and 30 m lap times, and aerobic fitness with the 30-15 intermittent fitness test (30-15 IFT). The anthropometric data revealed significantly lower height for MEL-G compared with NMEL-G: 1.73±0.05 and 1.80±0.08 m, respectively; P=0.05. The CMJ was significantly higher for MEL-G than NMEL-G: 50.4±5.9 and 45.2±4.3 cm, respectively; P=0.05. T-Test times were significantly lower for MEL-G than NMEL-G: 10.47±0.58 and 11.01±0.64 seconds, respectively; P=0.05. MEL-G height was significantly related to CMJ (r=0.706, P=0.01), CMJpeakP (r=0.709, P=0.01) and T-Test (r=0.589, P=0.02). No significant between-group differences were observed for sprint tests or 30-15 IFT, including heart rate and estimated VO2max. Between groups, the percentage decrement (%Dec) in RSA-COD was significantly lower in MEL-G than NMEL-G (P=0.05), although no significant difference was noted between RSA and RSA-COD. Within groups, no significant difference was observed between %Dec in RSA or RSA-COD; P=0.697. This study presents specific anthropometric (significantly lower height) and physiological (significantly greater agility) reference values in Melanesians, which, taken together, might help coaches and physical fitness trainers to optimize elite futsal training and talent identification in Oceania. ISSN: 0860-021X hal-01152338 https://hal.univ-antilles.fr/hal-01152338 DOI : 10.5604/20831862.1140428 | Partager |
![]() | Le programme d’EXTension RAisonnée du PLAteau Continental (EXTRAPLAC). Enjeux pour les trois collectivités ultramarines du Pacifique (Nouvelle-Calédonie, Wallis & Futuna, Polynésie française). Auteur(s) : Loubrieu, Benoit Roest, Walter Patriat, Martin Loubersac, Lionel Éditeur(s) : Neidine Editeurs Résumé : This article replaces the French program of legal extension of the continental shelf named EXTRAPLAC, interesting in particular the 3 overseas collectivities of the Pacific (New Caledonia, Wallis and Futuna and French Polynesia)” It considers this program in the context of the Convention of the United Nations on the Maritime law. It clarifies the governance system of this program set up by the authorities of the State. A specific chapter clarifies the constraints to be respected to build up the necessary file in respect of the international Committee requirements so said UNO Commission of the Limits of the Continental shelf. The article considers then scenarios presented by 3 territories and state of progress of the three cases, both regarding the acquisition of the useful data and the planning of adequate oceanographic campaigns and structuring the administrative files in front of the UNO in conjunction with the border countries. The article ends finally on the potential extensions, the exploitation rights of mineral and living resources as the obligations which it supposes Cet article replace le programme français d’extension juridique du plateau continental nommé EXTRAPLAC, intéressant notamment les 3 collectivités d’Outre-Mer du Pacifique (Nouvelle-Calédonie, Wallis et Futuna et Polynésie française) dans le contexte de la Convention des Nations Unies sur le Droit de la Mer. Il explicite le système de gouvernance de ce programme mis en place par les autorités de l’Etat. Un chapitre spécifique explicite les contraintes à respecter pour construire un dossier de demande présentable devant la Commission internationale spécialisée de l’ONU dite Commission des Limites du Plateau Continental. L’article considère ensuite les cas de figures présentés par les 3 territoires et l’état d’avancement des dossiers tant en matière d’acquisition des données utiles et de planification de campagnes océanographiques adéquates que de structuration et de dépôt administratif devant l’ONU en conjonction avec les pays frontaliers. L’article conclue enfin sur les extensions potentielles, les droits d’exploitation de ressources qui peuvent en être tirés comme les obligations que cela suppose. Taï Kona (2269-7535) (Neidine Editeurs), 2014 , N. 11 , P. 18 - 26 Droits : info:eu-repo/semantics/openAccess http://archimer.ifremer.fr/doc/00217/32820/31254.pdf http://archimer.ifremer.fr/doc/00217/32820/ | Partager |
![]() | Les capacités osmorégulatrices chez la crevette bleue Litopenaeus stylirostris, au cours de l’ontogenèse Auteur(s) : Pham, Dominique Éditeur(s) : Université de la Polynésie Française Résumé : The ontogeny of osmoregulation was studied in the blue shrimp Litopenaeus stylirostris in New Caledonia. The implication of branchial organs in ionic regulation was first demonstrated in juveniles by immunolocalization of three ion transporting proteins ( namely NKA, co-transporter NKCC1 and CFTR ) and ionocyte detection was done by means of electron microscopy. The role of the main ion transporting enzyme, NKA, was subsequently investigated during post-embryonic development using an integrative approach associating physiological, histological, immunological and biomolecular studies. Results obtained allowed us to propose a model of the osmoregulatory pattern in L. stylirostris based on weak regulation in the early stages, then progressively this species acquires the adult pattern of hyper-hypo-regulation after metamorphosis with the concurrent development of epipodites and gills. Strong NKA immunofluorescence and abundance of NKA transcripts in these two tissues compared to others organs suggest their functional implication in osmoregulatory processes. The results of this study allow us to increase our knowledge of the penaeid shrimp osmoregulation and to propose zootechnical measures to improve the animal physiological comfort. These propositions have been already tested during larval rearing trials, leading a two-fold-growth in 19 days-old postlarvae. L’étude de l’ontogenèse de l’osmorégulation a été entreprise chez la crevette bleue Litopenaeus stylirostris en Nouvelle-Calédonie. L’implication des tissus de la cavité branchiale dans la régulation ionique a été déterminée au préalable chez des juvéniles par immunolocalisation de trois transporteurs protéiques d’ions, ( la NKA, le co-transporteur NKCC1 et le CFTR ) et par la détection de ionocytes en microscopie électronique. Le rôle de la NKA a été particulièrement étudié et son implication a été examinée au cours du développement post-embryonnaire par une approche intégrative associant des études physiologiques, histologiques, immunologiques et moléculaires. Cette démarche nous a permis de proposer un modèle d’osmorégulation chez L. stylirostris: de faible régulatrice dans les premiers jours de sa vie, cette espèce évolue vers l’hyper-hypo-régulation après la métamorphose avec le développement progressif des épipodites et des branchies. L’immunofluorescence prononcée de la NKA ainsi que l’abondance des transcrits du gène codant la NKA dans les tissus de ces deux organes suggèrent leur implication fonctionnelle dans l’ionorégulation. Les résultats de ce travail nous ont permis d’accroître nos connaissances sur l’osmorégulation chez les pénéidés et de proposer des améliorations zootechniques visant à augmenter leur confort physiologique. Ces préconisations ont fait l’objet de premiers essais en conditions d’élevage et se sont traduites par un doublement de la croissance des post-larves de 19 jours. Droits : 2011 The author, Univ. Polynésie Française http://archimer.ifremer.fr/doc/00052/16314/13816.pdf http://archimer.ifremer.fr/doc/00052/16314/ | Partager |
![]() | Metal and metalloid bioaccumulation in the Pacific blue shrimp Litopenaeus stylirostris (Stimpson) from New Caledonia: Laboratory and field studies Auteur(s) : Metian, Marc Hedouin, Laetitia Eltayeb, Mohamed M. Lacoue-labarthe, Thomas Teyssie, Jean-louis Mugnier, Chantal Bustamante, Paco Warnau, Michel Éditeur(s) : Pergamon-elsevier Science Ltd Résumé : The present work aimed at better understanding metal and metalloid bioaccumulation in the edible Pacific blue shrimp Litopenaeus stylirostris, using both laboratory and field approaches. In the laboratory, the bioaccumulation kinetics of Ag, Cd, Co, Cr, and Zn have been investigated in shrimp exposed via seawater and food, using the corresponding gamma-emitting radiotracers (Ag-110m, Cd-109, Co-57, Cr-51, and Zn-65) and highly sensitive nuclear detection techniques. Results showed that hepatopancreas and intestine concentrated the metals to the highest extent among the blue shrimp organs and tissues. Moulting was found to play a non negligible detoxification role for Co, Cr and, to a lesser extent, Zn. Metal retention by L stylirostris widely varied (from a few days to several months), according to the element and exposure pathway considered (a given metal was usually less strongly retained when ingested with food than when it was taken up from the dissolved phase). In the field study, Ag, As, Cd, Co, Cr, Cu, Mn, Ni, and Zn were analysed in shrimp collected from a New Caledonian aquaculture pond. Metal concentrations in the shrimp muscles were generally relatively low and results confirmed the role played by the digestive organs and tissues in the bioaccumulation/storage/detoxification of metals in the Pacific blue shrimp. Preliminary risk considerations indicate that consumption of the shrimp farmed in New Caledonia is not of particular concern for human health. (C) 2010 Elsevier Ltd. All rights reserved. Marine Pollution Bulletin (0025-326X) (Pergamon-elsevier Science Ltd), 2010 , Vol. 61 , N. 7-12 , P. 576-584 Droits : 2010 Elsevier Ltd All rights reserved. http://archimer.ifremer.fr/doc/00014/12528/9869.pdf DOI:10.1016/j.marpolbul.2010.06.035 http://archimer.ifremer.fr/doc/00014/12528/ | Partager |
![]() | Ten years of experimental rearing of Penaeid shrimp in Tahiti and New Caledonia (South Pacific) Éditeur(s) : Proceedings of the 15 th Meeting World Mariculture Society, Vancouver Résumé : 5ince 1973, the "Centre Océanologique du Pacifique" has been conducting in its Tahitian and New-Caledonian facilities, tropical penaeid shrimp rearings. Up to now, among the different species tested, Penaeus monodon, P. stylirostris, P. indicus and P. vannamei have been selected and currently cultured for several generations. [NOT CONTROLLED OCR] Droits : info:eu-repo/semantics/openAccess http://archimer.ifremer.fr/doc/1984/acte-4444.pdf http://archimer.ifremer.fr/doc/00000/4444/ | Partager |
![]() | Non-market use and non-use values for preserving ecosystem services over time: A choice experiment application to coral reef ecosystems in New Caledonia Auteur(s) : Marre, Jean-baptiste Brander, Luke Thebaud, Olivier Boncoeur, Jean Pascoe, Sean Coglan, Louisa Pascal, Nicolas Éditeur(s) : Elsevier Sci Ltd Résumé : Non-use values (i.e. economic values assigned by individuals to ecosystem goods and services unrelated to current or future uses) provide one of the most compelling incentives for the preservation of ecosystems and biodiversity. Assessing the non-use values of non-users is relatively straightforward using stated preference methods, but the standard approaches for estimating non-use values of users (stated decomposition) have substantial shortcomings which undermine the robustness of their results. In this paper, we propose a pragmatic interpretation of non-use values to derive estimates that capture their main dimensions, based on the identification of a willingness to pay for ecosystem protection beyond one's expected life. We empirically test our approach using a choice experiment conducted on coral reef ecosystem protection in two coastal areas in New Caledonia with different institutional, cultural, environmental and socio-economic contexts. We compute individual willingness to pay estimates, and derive individual non-use value estimates using our interpretation. We find that, a minima, estimates of non-use values may comprise between 25 and 40% of the mean willingness to pay for ecosystem preservation, less than has been found in most studies. Ocean & Coastal Management (0964-5691) (Elsevier Sci Ltd), 2015-03 , Vol. 105 , P. 1-14 Droits : 2014 Elsevier Ltd. All rights reserved. http://archimer.ifremer.fr/doc/00244/35564/35398.pdf DOI:10.1016/j.ocecoaman.2014.12.010 http://archimer.ifremer.fr/doc/00244/35564/ | Partager Voir aussi Discrete choice experiment Ecosystem services valuation Non-use values Time decay Willingness to pay Télécharger |
![]() | Evaluation du probiotique bactérien Pediococcus acidilactici MA18/5M chez la crevette pénéide Litopenaeus stylirostris en Nouvelle- Calédonie Auteur(s) : Castex, Mathieu Éditeur(s) : Agro Paris Tech Résumé : P. acidilactici MA 18/5M is a dietary probiotic (BACTOCELL®) which has shown its efficiency on several terrestrial and aquatic species. The present thesis aimed to investigate more fully the effects of this probiotic on cultured penaeid shrimps. For this study, we chose a global approach by replacing the problem studied in a model of interactions between three compartments: the shrimp, its intestinal microflora and the probiotic. Having first defined how the probiotic should be administrated, we studied its effects under controlled laboratory conditions at several levels of Litopenaeus stylirostris biology: (i) Nutritional status and growth, (ii) associated bacterial microflora, and (iii) health status with respect to oxidative stress. Then the probiotic improves the growth of the shrimps and the feed conversion ratio. Our study shows that these effects are partially due to a better use of the feed, particularly of dietary carbohydrates, but also suggest an action on the metabolism, andor on the growth via a contribution of essential nutrients. On the other hand, although the intestinal bacterial communities seems little affected, we show an antagonism effect of the probiotic toward total and vibrionacea intestinal flora, as well as a decrease in the level of infection of shrimps during challenge with pathogenic V. nigripulchritudo. Beside, our works highlight that infection by this pathogen, led to a reduction in antioxidant defences, to a rise in oxidative damages, and to a release of mortalities within 48 hours. This oxidative stress following bacterial infection was better controlled by animals receiving the probiotic diet, and resistance of the shrimps to infection was significant improved. A nutritional hypothesis is proposed to explain such result, hypothesis based on a link between carbohydrate metabolism and antioxidant status. As a conclusion of these works, we can propose a first explanatory scenario for the effects of P. acidilactici on a penaeid shrimp. Finally probiotic's effects were assessed under a pilot scale in a commercial farm from New Caledonia currently affected by the "summer syndrome ". We confirm the improvements brought in term of zootechnical results, with in particular, a better resistance to this syndrome. This work was made possible thanks to a breeding method in floating cages, developed during this thesis, and therefore transferred, as an experimental tool, to the shrimp industry of New Caledonia. Pediococcus acidilacticii MA18/5M est un probiotique bactérien (BACTOCELL®) qui a démontré son efficacité chez plusieurs espèces d'animaux terrestres et aquatiques. Cette thèse avait pour objectif d'investiguer plus en détails les effets de ce probiotique chez les crevettes pénéides d'élevage. Pour cette étude, nous avons choisi une approche globale replaçant la problématique dans un modèle d'interactions entre trois compartiments : la crevette, sa microflore intestinale et le probiotique. Après avoir défini les modalités d'administration, l'effet de P. acicilactici a été étudié, en conditions de laboratoire, chez la crevette Litopenaeus stylirostris, à différents niveaux: (i) statut nutritionnel et croissance, (ii) microflore bactérienne associée, et (iii) santé de l'animal à travers son statut antioxydant et son niveau de stress oxydant. Ainsi, le probiotique améliore la croissance des crevettes et l'indice de conversion de l'aliment. Notre étude montre que ces effets sont en partie liés à une meilleure utilisation de l'aliment, notamment des carbohydrates alimentaires, mais suggèrent aussi une action sur le métabolisme, et/ou sur la croissance via un apport de nutriments essentiels. D'autre part, bien que les communautés bactériennes intestinales semblent peu affectées, un effet d'antagonisme du probiotique vis-à-vis de la flore intestinale totale et vibrionacée a été montré, ainsi qu'une réduction du niveau d'infection des crevettes au cours de challenge avec le pathogène V. nigripulchritudo. Par ailleurs, nous mettons en évidence que l'infection par ce pathogène, conduit à un abaissement des défenses antioxydantes, à une élévation des dégâts oxydatifs, et au déclenchement de mortalités dans les 48 heures. Le probiotique atténue le niveau de ce stress oxydant, et améliore significativement la résistance des crevettes à l'infection. Une hypothèse nutritionnelle est proposée afin d'expliquer ce résultat, hypothèse reposant sur un lien entre le métabolisme des carbohydrates et le statut antioxydant. A l'issue de ces travaux, nous pouvons alors proposer un premier scénario explicatif des effets de P. acidilactici chez une crevette pénéide. Finalement le probiotique a été éprouvé à l'échelle pilote sur une ferme commerciale de Nouvelle-Calédonie affectée par le « syndrome d'été ». Nous confirmons les améliorations apportées en termes de résultats zootechniques, avec notamment une meilleure résistance au syndrome. Ce travail a été réalisé grâce une méthode d'élevage en cages flottantes, mis au point au cours de cette thèse, et qui a dés lors été transférée, comme outil expérimental, à la filière crevetticole Calédonienne. Droits : info:eu-repo/semantics/openAccess http://archimer.ifremer.fr/doc/2009/these-6814.pdf http://archimer.ifremer.fr/doc/00000/6814/ | Partager |
![]() | Live preys in shrimp culture: nutritional and sanitary considerations on the use of Artemia in New Caledonia Auteur(s) : Pham, Dominique Wabete, Nelly Maillez, Jean-rene Broutoi, Francis Chim, Liet Éditeur(s) : PSIC 11 - 11th Pacific Science Inter-Congress : Pacific Countries and their Ocean: Facing Local and Global Changes / 2nd Symposium on French Research in the Pacific. March 2 - 6, 2009 Tahiti, French Polynesia. Résumé : In aquaculture, Artemia nauplii are commonly used as live prey; and represent 40 % of the total aquaculture feed demands in the early stages. However, the production of Brine shrimp is very unstable from one year to another and in the late 90’s, only 20 % of the world aquaculture need was covered. An insufficient offer leads to higher prices of the Artemia cysts and consequently, the price of shrimp juveniles from hatchery. In New Caledonia, marine aquaculture is mainly based on the blue shrimp Litopenaeus stylirostris. From Zoea 3 to 10 days old post-larvae (P10), the shrimp are mainly fed with live preys. Eleven kilos of Artemia cyst are necessary for producing one million of P10. From a sanitary point of view, Artemia can be a virus carrier and Vibrio population increase is often detected in the larval rearing tank the day after the feeding with live prey. Up to now, Brine shrimp are delivered in excess but with the cost and sanitary problems, Saint-Vincent laboratory has started some experiments in order to optimise the use of Artemia in shrimp larval rearing. The first tests were conducted to determine the effect of the Artemia quantity on the growth and the survival rate at different post-larval stages (P8-P11, P5-P8 and M3-P3). It was shown that four to twelve times fold Artemia was necessary for P8-P11 compared to M3-P3. And it was also noticed that the “optimized”quantity of live food at M3-P3 was twice lower than the recommended amount of the hatchery feeding protocol in New Caledonia. A better knowledge of the real feed requirement in the early life of the blue shrimp will be helpful to decrease the cysts quantities used in shrimp hatcheries but also the associated sanitary impact. And further, these results will give data for developing formulated diets which will replace the live prey and will increase the biosecurity and the sustainability of the production of the blue juvenile shrimp in New Caledonia. En aquaculture, les nauplii d’Artemia sont largement utilisés comme proies vivantes et représentent près de 40 % des besoins en aliments pour la production des stades précoces. Cependant, l’approvisionnement en Artemia peut fluctuer de façon importante d’une année sur l’autre. Ainsi vers la fin des années 90, la demande mondiale a pu être satisfaite seulement à hauteur de 20%. Les années avec une offre insuffisante correspondent à des augmentations importantes du cours mondial des cystes d’artemia avec des répercussions sur le prix des animaux juvéniles produits en écloserie. En Nouvelle-Calédonie, l’aquaculture marine est principalement basée sur la crevette bleue Litopenaeus stylirostris. Les larves de cette espèce, à partir du stade Zoé 3, se nourrissent essentiellement de proies vivantes. Ainsi pour produire un million de Post-larves de 10 jours il faut compter 11 kilos de cystes d’Artemia. Outre le problème posé par le coût, les artemii peuvent également représenter un risque sanitaire pour l’écloserie. En effet certaines souches sont infectées par des virus qui peuvent contaminer les crevettes et de façon plus générale l’introduction des artemii dans le volume d’élevage larvaire s’accompagne le plus souvent d’une flambée de la flore vibrionacée. Jusqu’à présent, les Artemii étaient distribuées en excès cependant du fait de leur coût et des risques sanitaires, le laboratoire de St Vincent a débuté un travail pour optimiser leur utilisation en production larvaire de crevette. Ainsi, nos premières expérimentation sur l’effet de la dose en artemii sur le développement et la survie des larves de crevettes ont permis de déterminer les rations optimales pour les stades larvaires P8-P11, P5-P8 et M3-P3. Nous avons ainsi montré que la ration de proies vivantes était 4 à 12 fois plus importante à P8-P11 qu’à M3-P3. Par ailleurs la dose optimale déterminée au cours de nos expérimentations était pour les stades M3-P3 deux fois moins élevée que celle préconisée par le protocole actuel des écloseries commerciales de Nouvelle-Calédonie. Nous voyons ainsi, qu’une meilleure compréhension des besoins alimentaires de la crevette au cours de son développement permettra de diminuer de façon substantielle les proies vivantes utilisées ainsi que le risque sanitaire associé. A terme, ces travaux donneront des bases au développement d’aliments inertes en remplacement des proies vivantes et à la production durable, en conditions de biosécurité, des crevettes bleues juvéniles pour la filière Calédonienne Droits : info:eu-repo/semantics/openAccess http://archimer.ifremer.fr/doc/00198/30877/29245.pdf http://archimer.ifremer.fr/doc/00198/30877/ | Partager |
![]() | Eutrophication in a tropical pond: Understanding the bacterioplankton and phytoplankton dynamics during a vibriosis outbreak using flow cytometric analyses Auteur(s) : Lucas, Ronan Courties, C. Herbland, Alain Goulletquer, Philippe Marteau, Anne-laure Lemonnier, Hugues Éditeur(s) : Elsevier Science Bv Résumé : In tropical shrimp ponds, the increasing of feed input, concomitantly with the stocking shrimp biomass, induces an eutrophication of the ecosystem. Although difficult to maintain, its stability is required to guarantee the success of the culture. A 110-day period of phytoplankton and bacterioplankton stock and dynamics in an earthen pond (1.2 ha area, 1 m depth) was monitored using flow cytometry to provide baseline information on community characteristics and ecosystem instability. Seven autotrophic cell types were identified over the whole sampling period. Prokaryotic cells included Synechococcus sp., a group named UNK which presented an atypical new flow cytometric signature and picoeukaryotes (PEUK). Nanophytoplankton cells were represented by 4 groups: NAN1, NAN2, NAN3 and Cryptophytes. During the first part of the survey, picophytoplankton dominated the phytoplanktonic assemblage. The mean abundance of total cells (up to 8 x 10(6) cells mL(-1)) was among the highest recorded in marine and brackish waters. Bacterial abundance and production ranged from 0.8 to 5.1 x 10(7) cells mL(-1) and from 30 to 110 mu g C L-1 h(-1). A shift from pico to nanophytoplankton abundance was observed for a few days from d 96. During this period, heterotrophic bacteria production and abundance suddenly dropped, implying a change in the functioning of the microbial loop. This shift was concomitant with a significant shrimp mortality outbreak due to Vibrio penaeicida, the etiological agent of a disease known as Syndrome 93, which affects the shrimp industry in New Caledonia. This survey suggests that flow cytometric analysis could be used for the monitoring of aquaculture systems to improve our understanding of the complex phytoplankton and bacterial dynamics of these systems and its potential influence on disease development. (c) 2010 Elsevier B.V. All rights reserved. Aquaculture (0044-8486) (Elsevier Science Bv), 2010-12 , Vol. 310 , N. 1-2 , P. 112-121 Droits : 2010 Elsevier B.V. All rights reserved. http://archimer.ifremer.fr/doc/00029/14068/11312.pdf DOI:10.1016/j.aquaculture.2010.10.022 http://archimer.ifremer.fr/doc/00029/14068/ | Partager Voir aussi Tropical shrimp aquaculture Ecosystem shift Phytoplankton Bacterioplankton Vibrio Flow cytometry Télécharger |
![]() | Shrimp and prawn farming in the western hemisphere Auteur(s) : Aquacop, Aquacop Résumé : Dr. Michel explained that obtaining spawners in Japan and the United States is quite different from the Tahitian problem, since AQUACOP's gravid shrimp must be flown in to Papeete from New Caledonia or the Fiji Islands and then trucked several hours to the Centre Oceanologique. [NOT CONTROLLED OCR] Droits : info:eu-repo/semantics/openAccess http://archimer.ifremer.fr/doc/1977/rapport-4440.pdf http://archimer.ifremer.fr/doc/00000/4440/ | Partager |
![]() | Quantification of Vibrio penaeicida, the etiological agent of Syndrome 93 in New Caledonian shrimp, by real-time PCR using SYBR Green I chemistry Auteur(s) : Goarant, Cyrille Merien, F Éditeur(s) : Elsevier Résumé : Shrimp farming is a small but growing industry in New Caledonia. Since 1993, "Syndrome 93" has been affecting New Caledonian shrimp farming industry every cold season, causing severe epizootic mortalities in grow-out ponds and significant losses. Highly pathogenic strains of Vibrio penaeicida are considered the etiological agent of the disease in Litopenaeus stylirostris. On one hand, studies demonstrated that healthy shrimp may carry V penaeicida for weeks with a high overall prevalence, regardless of any seasonal pattern or temperature conditions. On the other hand, larvae are free of V penaeicida and are also resistant to experimental infection. V penaeicida is frequently detected in incoming water pumped from the bays, which was shown, by a molecular typing study, to be the infectious source. This particular epidemiological pattern highlights the major role of the factors that trigger and aggravate the disease in grow-out ponds, where shrimp populations carry the pathogen all year round. In order to gain a better understanding of "Syndrome 93" epidemiology, quantification of V penaeicida both in shrimp and the shrimp farm ecosystem is necessary. This article describes the steps in the successful development of a real-time PCR quantification assay of V penaeicida in shrimp haemolymph, seawater (from ponds or bays) and sediment pore water, including the choice of an accurate extraction technique. The entire detection method; including sample processing, DNA extraction and real-time PCR amplification, can be completed within 4 h. (c) 2006 Elsevier B.V All rights reserved. Journal of Microbiological Methods (0167-7012) (Elsevier), 2006-10 , Vol. 67 , N. 1 , P. 27-35 Droits : 2006 Elsevier http://archimer.ifremer.fr/doc/2006/publication-1903.pdf DOI:10.1016/j.mimet.2006.02.013 http://archimer.ifremer.fr/doc/00000/1903/ | Partager |
![]() | Marine resources of the economic zone of New Caledonia Auteur(s) : Auzende, Jean-marie Grandperrin, René Bouniot, Emmanuel Henin, Christian Lafoy, Yves De Forges, Bertrand Van De Beuque, Sabrina Virly, Sabrina Éditeur(s) : Elsevier Résumé : The ZoNeCo programme, devoted to the evaluation of living and non-living marine resources within the Economic Zone of New Caledonia, illustrates clearly the Marine Benthic Habitats concept. It exhibits the study of the physical environment and disciplines such as geology and physical oceanography. The results acquired in these fields are used as bases to study the presence and the distribution of living species within a given habitat. The knowledge of all the parameters relative to each discipline is a useful guide for the evaluation and the sustainable management of living and nonliving resources. Le programme ZoNéCo d'évaluation des ressources marines vivantes et non vivantes de la zone économique de Nouvelle-Calédonie illustre clairement le concept d'habitat benthique marin. Il implique l'étude du milieu physique et les disciplines telles que la géologie, la géophysique et l'océanographie physique. Les résultats acquis serviront de base à l'étude de la présence et de la répartition des espèces vivantes dans un habitat considéré. La connaissance de l'ensemble des paramètres relatifs à chacune des disciplines est un guide précieux pour l'évaluation et la gestion harmonieuse des ressources. Oceanologica Acta (0399-1784) (Elsevier), 1999-11 , Vol. 22 , N. 6 , P. 557-566 Droits : 1999 Ifremer / CNRS / IRD / Editions scientifiques et medicales Elsevier SAS http://archimer.ifremer.fr/doc/1999/publication-832.pdf DOI:10.1016/S0399-1784(00)88947-1 http://archimer.ifremer.fr/doc/00000/832/ | Partager |
![]() | Les énergies marines renouvelables : qu'est-ce que c'est ? Quelles perspectives en Nouvelle-Calédonie. Auteur(s) : De Roeck, Yann-herve Loubersac, Lionel Éditeur(s) : Neidine Editeurs Résumé : This text presents a review of the various technologies for exploitation of renewable marine energy resources. Il exposes the solutions offered by tide and currents, swell and waves, the marine wind energy, the Ocean Thermal Energy, the osmotic energy and specifies the various degrees of technological maturity for each solution. This new economic activity on the littoral and coastal areas also contains indirect effects in terms of management which are called back. The inter-tropical islands benefit from a very vast potential for the insertion of these renewable sources of energy in their mix of energy production. Although the exploitation of these energies is not still the object of a programming in New Caledonia, an overview of the specificities of the country allows to think that certain medium term solutions will be possible. Ce texte présente une revue des différentes technologies d’exploitation des ressources énergétiques qui peuvent être tirées de la mer. On expose ainsi les solutions offertes par la marée et les courants, la houle et les vagues, l’éolien marin, l’énergie thermique des mers, l’énergie osmotique et on précise les degrés de maturité technologique très échelonnés de chaque solution. Cette nouvelle activité économique sur l’espace littoral et côtier comporte également des effets indirects en termes d’aménagement qui sont rappelés. Les îles inter-tropicales bénéficient d’un très vaste potentiel pour l’insertion de ces EMR dans leur mix de production énergétique. Bien que l’exploitation de ces énergies ne fasse pas encore l’objet d’une programmation en Nouvelle-Calédonie, un rappel des spécificités du pays permet de penser que certaines solutions seront envisageables à moyen terme. Tai Kona (2269-7535) (Neidine Editeurs), 2013-09 , N. 4 , P. 24-40 Droits : Tai kona http://archimer.ifremer.fr/doc/00174/28504/26853.pdf http://archimer.ifremer.fr/doc/00174/28504/ | Partager |
![]() | Rapid and sensitive PCR detection of Vibrio penaeicida, the putative etiological agent of syndrome 93 in New Caledonia Auteur(s) : Saulnier, Denis Avarre, Jean-christophe Le Moullac, Gilles Ansquer, Dominique Levy, Peva Vonau, Vincent Éditeur(s) : Inter-Research Résumé : Experimental infections of Penaeus (Litopenaeus) stylirostris were performed with a Vibrio penaeicida strain (AM101) isolated in New Caledonia from Syndrome 93 diseased shrimp. Cumulative mortalities resulting from intramuscular injection or immersion of shrimp in bacterial suspensions demonstrated high virulence for this bacterial strain and suggested that V. penaeicida could be the etiological agent of Syndrome 93. The median lethal dose (LD50) for AM101 was 1.3 x 104 CFU (colony forming units) ml-1 by immersion and less than 5 CFU shrimp-1 by intramuscular challenge, with mortality outbreaks at 48 and 22 h after challenge, respectively. A polymerase chain reaction (PCR) detection assay using a primer set designed from the 16S ribosomal RNA gene of V. penaeicida was developed. It gave an expected amplicon of approximately 310 bp in ethidium bromide-stained agarose gels. The specificity of these primers was assessed with different Vibrio species. Furthermore, DNA extracted by the ChelexTM method could be used to detect fewer than 20 cultured Vibrio cells in seawater or shrimp hemolymph by this assay. It appears to be a reliable screening method for detecting V. penaeicida in shrimp and from the aquatic environment. Diseases of aquatic organisms (0177-5103) (Inter-Research), 2000-03 , Vol. 49 , N. 2 , P. 109-115 Droits : Inter-Research 2000 http://archimer.ifremer.fr/doc/2000/publication-4436.pdf DOI:10.3354/dao040109 http://archimer.ifremer.fr/doc/00000/4436/ | Partager |