Éditeur(s) : HAL CCSD Integrated Ocean Drilling Program
Résumé : Integrated Ocean Drilling Program (IODP) Expedition 325, designed to investigate the fossil reefs on the shelf edge of the Great Barrier Reef, was the fourth expedition to utilize a mission-specific platform and was conducted by the European Consortium for Ocean Research Drilling (ECORD) Science Operator (ESO). The objectives of Expedition 325 were to establish the course of sea level change, define sea-surface temperature variations, and analyze the impact of these environmental changes on reef growth and geometry for the region over the period of 20-10 ka. To meet these objectives, a succession of fossil reef structures preserved on the shelf edge seaward of the modern barrier reef were cored from a dynamically positioned vessel in February-April 2010. A total of 34 boreholes across 17 sites were cored in depths ranging from 42.27 to 167.14 meters below sea level (lowest astronomical tide taken from corrected EM300 multibeam bathymetry data). Borehole logging operations in four boreholes provided continuous geophysical information about the drilled strata. The cores were described during the Onshore Science Party (OSP) at the IODP Bremen Core Repository (Germany) in July 2010, where minimum and some standard measurements were made. Preliminary postcruise dating of core catcher samples and initial observations of the cores made during the OSP confirm that coral reef material ranging in age from >30,000 to 9,000 calendar years before present (years before 1950 AD) was recovered during Expedition 325. Further postcruise research on samples taken during the OSP is expected to fulfill the objectives of the expedition.
ISSN: 1930-1014

hal-00855800
https://hal.archives-ouvertes.fr/hal-00855800

Éditeur(s) : ICES 2008 Annual Science Conference, 22-26 september 2008, HALIFAX, CANADA
Résumé : The development on the ecosystem-based approach to fisheries implies to improve integrated analysis of fisheries by considering the biological as well as the socio-economic dimensions of the exploitation and thus, an improvement in the knowledge of fleets structure, evolution and activity. Since 2000, Ifremer has been implemented a Fisheries Information System (FIS), a multidisciplinary monitoring network allowing an integrated and comprehensive view of fishery systems including biological, technical, environmental and economical components. The FIS covers all the French fisheries, including the so-often neglected small-scale fisheries. One of the originalities of the FIS lies in the fleet monitoring procedure: a comprehensive collection of annual activity calendars aiming at characterizing the inactivity or activity of the vessels each month of the year and, in the latter case, the métiers practised (use of a gear to target one or several species) and the main fishing areas. This survey covers all the French fishing fleets and provides minimum but exhaustive information on the vessels. It is particularly instructive for the small-scale fisheries, where catches and effort data are often incomplete. Furthermore, this exhaustive data allows stratifying the fleet in fleets (typologies) and thus provides the basis (i) for the implementation of sampling schemes to estimate catches, landings, discards or economic performance of the different fleets and (ii) for the development of a fleet-métier matrix giving the possibility of identifying at the time, the structure of the whole fleet in fleets, the métier polyvalence of the vessels and the allocation of fishing effort on the different exploited fishing resources.

Droits : 2008 ICES
http://archimer.ifremer.fr/doc/00059/16996/14498.pdf
http://archimer.ifremer.fr/doc/00059/16996/

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Hydrogen can be stored in the structure of nominally anhydrous minerals as point defects, and these impurities substantially modify many physical properties of Earth's mantle minerals. However, mantle rocks are composed of mineral grains separated by grain boundaries and interphase grains boundaries. Therefore, as a potential hydrogen reservoir, grain boundaries should be given proper attention. Here, I report an experimental investigation into hydrogen diffusion through grain boundaries in polycrystalline aggregates Sintering and diffusion experiments were performed using a gas-medium high-pressure vessel at under pressure of 300 MPa and over a temperature range of 900-1,250 degrees C. The diffusion assembly consisted of a polycrystalline cylinder of aluminous spinel + olivine crystals with a talc cylinder as the main hydrogen source. A Ni capsule was used to buffer the oxygen fugacity at Ni-NiO Experimental durations varied from 5 min to 5 h. The presence of hydrogen in the crystals was measured by Fourier-transform infrared spectroscopy. The calculation of the diffusion coefficients was based on the estimation of the characteristic distance. The absence or presence of hydrogen recorded by the 'hydrogen sensor' olivines embedded in the aggregate allows the estimation of bounds on this characteristic distance. Results presented here suggest that hydrogen effective diffusion coefficients are only one order of magnitude faster (similar to 10(-9) m(2)s(-1) at 1,000 degrees C) than in an olivine single crystal along the [100] axis. Resulting diffusion coefficients for hydrogen in grain boundary are four orders of magnitude faster than in a single crystal, but this diffusivity is not fast enough to affect hydrogen mobility in mantle rocks with grain sizes greater than similar to 1 mm. Thus, very limited chemical homogenization would occur using grain boundaries diffusion in mantle hydrous peridotite for incompatible and volatile element, such as hydrogen.
ISSN: 0010-7999

hal-00564353
https://hal.archives-ouvertes.fr/hal-00564353
DOI : 10.1007/s00410-010-0512-4

Résumé : At the request of local correspondents of the statistical system, an internship about fishing vessels was organised. The goal of this internship was to show the diversity, variability and specificity of "passive" (or sleeping) vessels, depending, on the one hand, on the region or the country, and on the other hand, on the researched species. The report's table of contents: General Points Lines and ropes Selectivity Ship Owners' Report Nets Mesh Nets Cast Nets Lift Nets Traps Lines and Hooks Handlines Trolling Lines Longlines FADs Fitting out the Boats Line Haulers Gillneters Lobster Pot Boats Boulters Vessel/Species Compatibility ETS Le Drezen Visit Classification of fishing vessels List of "fishing technology" videos Documents in French about "fishing technology" Ending
A la demande des correspondants locaux du système statistique, un stage sur les engins de pêche a été organisé. Ce stage avait pour but de montrer les diversités, la variabilité et la spécificité des engins "passifs" (ou arts dormants), selon d'une part les régions, ou le pays, et d'autre part les espèces recherchées. Sommaire du rapport : Generalites Fils et cordages Sélectivité Rapport d'armement Les filets Les filets maillants Les filets lances Les filets soulevés Les pièges Les lignes et hameçons Les lignes a main Les lignes de traîne Les palangres Les D.C.P. Les aménagements des bateaux Les vireurs Les fileyeurs Les caseyeurs Les palangriers La compatibilité engin / espece Visite des ETS Le Drezen Classification des engins de pêche Liste des films vidéo en "technologie pêche" Documents en français sur "technologie pêche" Finalites

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1994/rapport-2194.pdf
http://archimer.ifremer.fr/doc/00000/2194/

Résumé : The general study, scheduled from 1984 to 1986, aims at providing a judgement about the fisheries in the Celtic Sea. This area has been chosen because it is frequented by EEC vessels with, for the time being, a large majority of French vessels. Activities there are easier to monitor than anywhere else as coastal fisheries are little developed in the area. The final product will consist of a certain number of hypotheses about the planning strategies that could be implemented in the Celtic Sea. The main idea is, firstly, to conduct analytical studies, stock by stock, in order then, to synthesize them into a model integrating the interactions between fleets in relation to their target species. A bio-economical model, deriving from the latter, will enable the simulation of the consequences of the current planning procedures on the management of stocks and vessels.
L'étude générale, programmée de 1984 à 1986, vise à fournir un avis sur les pêcheries de Mer Celtique. Cette zone a été choisie car elle est fréquentée par les flottilles de la CEE avec cependant, pour le moment, une dominante française quasi exclusive. Les activités qui s'y exercent peuvent être cernées plus facilement que partout ailleurs car les pêcheries côtières sont très peu développées. Le produit final consistera dans la présentation d'un certain nombre d'hypothèses sur les stratégies d'aménagement adaptables à la Mer Celtique. La voie choisie consiste, dans un premier temps, dans des études analytiques, stock par stock, puis dans leur synthèse dans un modèle intégrant les interactions entre flottilles en relation en particulier avec la recherche des espèces-cibles. Un modèle bio-économique, dérivé du précédent, permettra de simuler les conséquences des procédures habituelles d'aménagement sur la gestion des stocks et des flottilles.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1985/rapport-3671.pdf
http://archimer.ifremer.fr/doc/00000/3671/

Éditeur(s) : HAL CCSD Copernicus Publications
Résumé : The Mohorovičić discontinuity (Moho) is a seismically imaged, first order acoustic interface assumed to represent the transition between the Earth's crust and the underlying mantle in both continental and oceanic settings. To date, this elusive frontier has been a symbolic goal for many geologists, but beyond the reach of available drilling technology. With the recent commissioning of the Chikyu, a new riser-drilling vessel oftheIntegrated Ocean Drilling Program (IODP), the technically challenging goal of drilling to and through the Moho within the ocean basins becomes feasible.
ISSN: 1816-8957

hal-00406589
https://hal.archives-ouvertes.fr/hal-00406589

Éditeur(s) : Elsevier
Résumé : In order to provide reliable scientific advice and support for fisheries management, it is necessary to evaluate the biological and economic sustainability of complex fisheries, such as multi-species multi-fleet fisheries. Existing policy-screening modelling tools are not fully suitable in this purpose due to either an over-simplified description of population dynamics, or due to the lack of consideration of economic aspects. In this paper, we present a package that enables quantitative bioeconomic assessment of management scenarios. Population dynamics is described through spatially- and seasonally-explicit models. Exploitation dynamics is characterized by several fishing activities with specific spatial and seasonal features, and practiced by several kinds of vessels with specific technical characteristics. Exploitation costs and revenues are considered at several levels: the fishing trip, the fishing unit (vessel and crew), and the vessel owner. The model is generic and can be used for different types of fisheries. A database is attached to the software for the storage and updating of information for each fishery. This includes the specification of model dimensions and of the parameters describing populations and exploitation. Several model assumptions regarding either population or exploitation may be adapted to suit a specific fishery. Both policies and corresponding fishers' response may be interactively specified through JAVA (TM) scripts. This version of ISIS-Fish allows for the calculation of biological and economic consequences of a range of policies, including conventional ones like catch and effort controls, and alternative policies such as marine protected areas. To facilitate policy-screening in a high-dimension parameter space, the software includes features, like interfaces for sensitivity analysis and simulation queues. (C) 2009 Elsevier B.V. All rights reserved.
Ecological Modelling (0304-3800) (Elsevier), 2009-04 , Vol. 220 , N. 7 , P. 1013-1033

Droits : 2009 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2009/publication-6782.pdf
DOI:10.1016/j.ecolmodel.2009.01.007
http://archimer.ifremer.fr/doc/00000/6782/

Éditeur(s) : Inter-research
Résumé : Ecosystem-based management (EBM) requires more extensive information than single-species management. Active underwater acoustic methods provide a means of collecting a wealth of ecosystem information with high space-time resolution. Worldwide fisheries institutes and agencies are carrying out regular acoustic surveys covering many marine shelf ecosystems, but these data are underutilized. In addition, more and more acoustic data collected by vessels of opportunity are becoming available. To encourage their use for EBM, we provide a brief introduction to acoustic and complementary data collection methods in the water column, and review current and potential contributions to monitoring population abundance and biomass, spatial distributions, and predator-prey relationships. Further development of acoustics-derived indicators is needed. We review and propose indicators for assessing and monitoring zooplankton, population dynamics of fish and other nekton, and changes in diversity and food-web functioning. Acoustic methods have the potential to make a strong contribution to EBM. Evaluation of new indicators and suitable reference points in different ecosystems are the current challenges.
Marine Ecology-progress Series (0171-8630) (Inter-research), 2011 , Vol. 442 , P. 285-301

Droits : 2011 Inter-research
http://archimer.ifremer.fr/doc/00073/18445/15972.pdf
DOI:10.3354/meps09425
http://archimer.ifremer.fr/doc/00073/18445/

Éditeur(s) : HAL CCSD Advisory Council on Underwater Archaeology
Résumé : International audience
On 18 December 1809 under the pressure of an English fleet, two Napoleonic Period store-ships, corvettes de charge,were sunk in Anse à la Barque on the west coast of Guadeloupe (FWI), south of the town of Bouillante. Underwaterarchaeological excavations, took place between 2001 and 2008. these investigationsrevealed that, in addition to those two shipwrecks, hulls of four different ships were also present on the seafloor. Twoof them have been identified as the French vessels Seine and Loire by comparing archival data to the archaeologicalrecord. The presence of so many shipwrecks in a secondary mooring of the west coast of Guadeloupe is explained by itstopographical characteristics and its proximity to Basse-Terre.
ACUA Underwater Archaeology Proceedings 2010

hal-01443280
https://hal.archives-ouvertes.fr/hal-01443280
https://hal.archives-ouvertes.fr/hal-01443280/document
https://hal.archives-ouvertes.fr/hal-01443280/file/ACUA%20Proceedings%202010%20JS%20Guibert.pdf

Éditeur(s) : Pêche thonière et dispositifs de concentration de poissons, Caribbean-Martinique, 15-19 Oct 1999 15-19 octobre 1999
Résumé : Since the early 1990s, drifting Fish Aggregating Devices, or FADs, have rapidly become the dominant type of floating object used by the purse seine fishery in the Eastern Pacific Ocean to capture tunas. The development of this fishery for larger vessels is described using data collected by observers aboard vessels of more than 363 metric tons fish-carrying capacity. Bamboo rafts, equipped with radio-transmitters that allow for semi-continuous monitoring, are typically used as FADs. Old purse seine netting is often suspended below the bamboo raft to give the FAD an enhanced underwater profile. Similar to the fishery on flotsam between 1992-1998, most sets on FADs were made before 8 am, with skipjack and bigeye being the dominant tuna species caught, and yellowfin tuna captured in lesser amounts. Discard ratios of skipjack and bigeye were comparable for the two modes of fishing; however, the success rate on FADs for bigeye was more than twice that on non-FAD floating objects ("logs"). In addition, the fishery on logs was largely a coastal hshery, while the fishery on FADs extended west to 150 W, into areas that had not been significantly utilized by the purse seine fleet. The capture of tunas per set varied most with area, season and year. Nonetheless, capture per set for at least one of the three tuna species was also found to vary with the depth of the purse seine net and the amount of the netting hanging below the FAD. The effect of net depth and FAD depth on tuna capture varied by area, season and FAD color.

Droits : Ifremer
http://archimer.ifremer.fr/doc/00042/15282/12668.pdf
http://archimer.ifremer.fr/doc/00042/15282/

Éditeur(s) : HAL CCSD Wiley
Résumé : Wood specific gravity (WSG) is a strong predictor of tree performance across environmental gradients. Yet it remains unclear how anatomical elements linked to different wood functions contribute to variation in WSG in branches and roots across tropical forests. [br/][br/]We examined WSG and wood anatomy in white sand, clay terra firme and seasonally flooded forests in French Guiana, spanning broad environmental gradients found throughout Amazonia. We measured 15 traits relating to branches and small woody roots in 113 species representing the 15 most abundant species in each habitat and representative species from seven monophyletic lineages occurring in all habitats. [br/][br/]Fiber traits appear to be major determinants of WSG, independent of vessel traits, in branches and roots. Fiber traits and branch and root WSG increased from seasonally flooded species to clay terra firme species and lastly to white sand species. Branch and root wood traits were strongly phylogenetically constrained. Lineages differed in wood design, but exhibited similar variation in wood structure across habitats. [br/][br/]We conclude that tropical trees can invest differently in support and transport to respond to environmental conditions. Wind disturbance and drought stress represent significant filters driving tree distribution of Amazonian forests; hence we suggest that biophysical explanations should receive more attention.
ISSN: 0028-646X

hal-01195075
https://hal.archives-ouvertes.fr/hal-01195075
PRODINRA : 269680
PUBMED : 24329812

Éditeur(s) : Wiley InterScience
Résumé : This paper reports on the status and design of the operational remotely operated vehicle Victor 6000, rated for 6000 m depth and of the 3000 m depth autonomous underwater vehicle Asterxx operated by Ifremer the French Institute for Sea Exploitation. Victor 6000 is part of a global system built of subsystems, scientific modules, winch and cable, dead weight and umbilical, positioning subsystem using acoustic ultra short base line (USBL) techniques, and software for data and dive management. In 2005 the system was equipped with a second toolsled dedicated to high resolution mapping of the sea bed, with both acoustical and optical devices. Asterxx, the first autonomous underwater vehicle (AUV) developed by IFREMER, is 4.5 m in length with a diameter of 0.69 m. Depending on the payload, its weight is between 600 and 800 kg in air,with a diving depth of 3000 m. Its cruising speed is between 0.5 and 2.5 ms. The AUV is capable of carrying various payloads for a wide spectrum of applications. The vehicle can cruise up to 100 km. For coastal applications this vehicle is operable by a limited crew potentially from a nonspecialized vessel. Both vehicles are used for oceanography as well as to continually evolve underwater systems to address new scientific challenges.
Journal of Field Robotics (1556-4959) (Wiley InterScience), 2007-06 , Vol. 24 , N. 6 , P. 449-459

Droits : 2007 Wiley InterScience
http://archimer.ifremer.fr/doc/2007/publication-2806.pdf
DOI:10.1002/rob.20195
http://archimer.ifremer.fr/doc/00000/2806/

Éditeur(s) : Proceedings of the 60th GCFI Conference, Punta Cana, Dominican Republic, 5 - 9 Nov 2007. pp.1-11
Résumé : The development of the ecosystemic approach for fisheries supposes to improve integrated analysis of fisheries by considering the biological as well as the socio-economic dimensions of the exploitation. A prerequisite for integrated analysis is the improvement in the knowledge of fleets structure, fleet evolution and allocation of fishing effort in the different fisheries. However, small scale fisheries are often characterized by a lack of knowledge on the vessel fishing activity. This paper first presents a data collection methodology recently applied in the French West (Guadeloupe and Martinique) for the follow up of the whole vessel population. Based on a statistical analysis of these data sets, the paper develops a fleet-metier matrix giving the possibility to identify the structure of the fleet, the metier polyvalence of the vessels but also the origin of fishing mortality on the different exploited fishing resources. We then discuss the interest of this methodology for fisheries analysis and the perspective in terms of fisheries management at regional levels.
Le développement de l’approche écosystémique des pêches suppose de renforcer les analyses couplant les dimensions biologiques et socio-économiques de l’exploitation. Cela passe en particulier par une meilleure connaissance des flottilles de pêche, de leur évolution et l’allocation de l’effort de pêche dans les différentes pêcheries. Dans un contexte de connaissance souvent très limitée sur l’activité de navires de petite pêche, ce papier présente la méthodologie de collecte de données utilisée, dans le cas des îles des Antilles françaises (Guadeloupe et Martinique). Sur la base d’une collecte de données minimale mais exhaustive de l’activité des navires, le papier propose le développement une analyse matricielle (flottilles-métiers) permettant de caractériser la structure des flottilles de pêche, d’identifier leur polyvalence en termes de métiers pratiqués et l’origine de la mortalité par pêche. On discute enfin l’intérêt de ce type d’approche pour l’analyse de pêcheries ainsi que les perspectives pour la gestion des pêches.
El desarollo del estudio del ecosistema de las pescas supone que hay que intensificar los análisis considerando a la vez las dimensiones biológicas y socio-económicas de la explotación. Esto supone un mejor conocimiento de las flotillas de pesca, de su evolucíon y de la atribución del esfuerzo de pesca en las diferentes pesquerías. Sabiendo que los conocimientos sobre la actividad de los buques de pequeña pesca son muchas veces limitados, este documento presenta la metodología de recolección de informaciones estadísticas dada en el caso de las islas de las antillas francesas (Guadeloupe y Martinique). Basándose en una recoleccíon de informaciones estadísticas mínima pero eschaustiva de la actividad de los buques, este documento propone el desarollo de un análisis de las matrices (flotillas-metiers) que permite caracterizar la estructura de las flotillas de pesca y de identificar su caracter polivalente en términos de metiers practicados. No solo permite discutir sobre el impacto de las políticas que tienden a reorientar el esfuerzo de pesca de las especies de los bancos insulares hacia las especies pelágicas, sino también permite discutir sobre el interés de generalizar este tipo de recolección de informaciones estadísticas en los sistemas de observación de las pesquerías a escala de las pequeñas Antillas o de otros espacios pertinentes para la gestión de las pescas. Palabras llaves : flotillas, metiers, actividad de pesca, pequeña pesca, gestión de las pescas

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00243/35456/33985.pdf
http://archimer.ifremer.fr/doc/00243/35456/

Éditeur(s) : Mercator Ocean
Résumé : Face to the lack of data to assess precisely the spatial distribution of catches and fishing effort and for the environmental characterization of the fishing area, Ifremer has been implemented since 2005 a new project, Recopesca. It consists in fitting out a sample of voluntary fishing vessels with sensors recording data on fishing effort (and at mid-terms catches) and physical parameters such as temperature or salinity. Recopesca aims at setting up a network of sensors, for scientific purposes, to collect data and improve resources assessment and diagnostics on fisheries, and environmental data required for ecosystem-based management initiatives. The challenge was to develop sensors with no trouble for the fishermen, tough enough to be fixed up on fishing gears, self powered and autonomous. Insofar as the sample of targeted vessels intends to be representative of all the metiers and fleets, the sensors are modular and scalable to collect new data. Different sensors have been implemented: (i) a temperature-salinity sensor, able to record physical parameters, depth and duration of immersion, for passive and active gears, and (ii) a specific sensor to record number or length of passive gears. A GPS monitors the position of the vessels and the temperature or salinity profiles and series. Each sensor is equipped with a radio device transferring the data to a receiver on-board, called “concentrator” that sends the data to Ifremer central databases by GPRS. An anti-rolling weigh-scale has been developed and is currently on test to record catches per species and fishing operation. The presentation will show the first data and results of this participative approach.
Mercator Ocean - Quarterly Newsletter (Mercator Ocean), 2010-04 , N. 37 , P. 40-48

Droits : 2010 Mercator Ocean
http://archimer.ifremer.fr/doc/00024/13500/10514.pdf
http://archimer.ifremer.fr/doc/00024/13500/

Éditeur(s) : HAL CCSD
Résumé : This paper studies the implications of fi…sh search activities on the working of …fisheries. We develop a simple …shery matching modelin which …rms’ stochastic search for …sh requires speci…fic resources.The equilibrium level of anthropic pressure (number of empty ves-sels/conserved …sh stock) exerted by …rms on the …sh stock is derivedfrom their individual pro…t maximizing behavior. Anthropic pressuredetermines in turn the rate at which vessels fi…nd fi…sh i.e. catchability,which is therefore endogenous in our model, and the stock conserva-tion (uncaught …sh) rate, through the dynamic equation of the latter.We then show that under open access, equilibrium anthropic pressure,…fishing effort and the conservation rate heavily depend on search costs.An empirical study of the French Guiana shrimp …shery con…rms theability of the model to reproduce empirical data.
https://hal.univ-antilles.fr/hal-01228851

Droits : info:eu-repo/semantics/OpenAccess
hal-01228851
https://hal.univ-antilles.fr/hal-01228851
https://hal.univ-antilles.fr/hal-01228851/document
https://hal.univ-antilles.fr/hal-01228851/file/Nicolas%20Sanz%20%26Bassirou%20Diop.pdf

Éditeur(s) : HAL CCSD Publisher : Paris : Baillière [1980-. Latest Publisher : Paris : Elsevier
Résumé : National audience
Pneumocystis jiroveci (anciennement P. carinii) est un champignon opportuniste responsable de pneumopathies chez les patients immunodéprimés. Les pneumocystoses des patients non infectés par le VIH se distinguent des pneumocystoses du sida par des difficultés diagnostiques accrues, et un pronostic plus sombre. Il est donc indispensable de cibler les immunodépressions les plus à risque, qui bénéficieront d’un traitement par triméthoprime-sulfaméthoxazole à faible dose au long cours, très efficace en prophylaxie des pneumocystoses : ainsi, les vascularites des moyens et petits vaisseaux, les hémopathies lymphoïdes B (leucémie lymphoïde chronique ou aiguë, lymphome malin non hodgkinien) et les cancers solides sous corticothérapie prolongée doivent faire envisager cette prophylaxie. À l’inverse, la généralisation de la prophylaxie à l’ensemble des patients porteurs de pathologies inflammatoires sous corticothérapie n’est pas justifiée. La prise en charge des pneumocystoses des patients non infectés par le VIH suit les principes établis pour les pneumocystoses du sida. Le diagnostic de certitude repose sur la mise en évidence de kystes de P. jiroveci sur des prélèvements respiratoires, tandis que la PCR ne permet pas formellement, en 2015, de différencier colonisation et infection. Le traitement repose sur le triméthoprime-sulfaméthoxazole à fortes doses. Par contre, l’intérêt de la corticothérapie adjuvante pour les patients hypoxémiques, parfaitement documenté au cours du sida, est discuté pour les autres immunodépressions, d’autant que les patients sont en général déjà sous corticoïdes au moment du diagnostic de pneumocystose. Celle-ci est cependant préconisée par plusieurs experts et sociétés savantes, compte tenu du bénéfice démontré sur la morbi-mortalité au cours du sida. Abstract Pneumocystis jiroveci (formerly P. carinii) is an opportunistic fungus responsible for pneumonia in immunocompromised patients. Pneumocystosis in non-HIV-infected patients differs from AIDS-associated pneumocystosis in mostly two aspects: diagnosis is more difficult, and prognosis is worse. Hence, efforts should be made to target immunocompromised patients at higher risk of pneumocystosis, so that they are prescribed long-term, low-dose, trimethoprime-sulfamethoxazole, highly effective for pneumocystosis prophylaxis. Patients at highest risk include those with medium and small vessels vasculitis, lymphoproliferative B disorders (chronic or acute lymphocytic leukaemia, non-Hodgkin lymphoma), and solid cancer on long-term corticosteroids. Conversely, widespread use of prophylaxis in all patients carrier of inflammatory diseases on long-term corticosteroids is not warranted. The management of pneumocystosis in non-AIDS immunocompromised patients follows the rules established for AIDS patients. The diagnosis relies on the detection of P. jiroveci cyst on respiratory samples, while PCR does not reliably discriminate infection from colonization, in 2015. High-doses trimethoprim-sulfamethoxazole is, by far, the treatment of choice. The benefit of adjuvant corticosteroid therapy for hypoxic patients, well documented in AIDS patients, has a much lower level of evidence in non-HIV-infected patients, most of them being already on corticosteroid by the time of pneumocystosis diagnosis anyway. However, based on its striking impact on morbi-mortality in AIDS patients, adjuvant corticosteroid is recommended in hypoxic, non-HIV-infected patients with pneumocystosis by many experts and scientific societies
ISSN: 0248-8663

hal-01237080
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01237080
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01237080/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01237080/file/Pneumocystose%20chez%20les%20patients%20immunod%C3%A9prim%C3%A9s%20non%20infect%C3%A9s%20par%20le%20VIH.pdf
DOI : 10.1016/j.revmed.2015.10.002

Éditeur(s) : Elsevier Science Bv
Résumé : Recent advances in technologies have lead to a vast influx of data on movements, based on discrete recorded position of animals or fishing boats, opening new horizons for future analyses. However, most of the potential interest of tracking data depends on the ability to develop suitable modelling strategies to analyze trajectories from discrete recorded positions. A serious modelling challenge is to infer the evolution of the true position and the associated spatio-temporal distribution of behavioural states using discrete, error-prone and incomplete observations. In this paper, a Bayesian Hierarchical Model (HBM) using Hidden Markov Process (HMP) is proposed as a template for analyzing fishing boats trajectories based on data available from satellite-based vessel monitoring systems (VMS). The analysis seeks to enhance the definition of the fishing pressure exerted on fish stocks, by discriminating between the different behavioural states of a fishing trip, and also by quantifying the relative importance of each of these states during a fishing trip. The HBM approach is tested to analyse the behaviour of pelagic trawlers in the Bay of Biscay. A hidden Markov chain with a regular discrete time step is used to model transitions between successive behavioural states (e.g., fishing, steaming, stopping (at Port or at sea)) of each vessel. The parameters of the movement process (speed and turning angles) are defined conditionally upon the behavioural states. Bayesian methods are used to integrate the available data (typically VMS position recorded at discrete time) and to draw inferences on any unknown parameters of the model. The model is first tested on simulated data with different parameters structures. Results provide insights on the potential of HBM with HMP to analyze VMS data. They show that if VMS positions are recorded synchronously with the instants at which the process switch from one behavioural state to another, the estimation method provides unbiased and precise inferences on behavioural states and on associated movement parameters. However, if the observations are not gathered with a sufficiently high frequency, the performance of the estimation method could be drastically impacted when the discrete observations are not synchronous with the switching instants. The model is then applied to real pathways to estimate variables of interest such as the number of operations per trip, time and distance spent fishing or travelling. (C) 2010 Elsevier B.V. All rights reserved.
Ecological Modelling (0304-3800) (Elsevier Science Bv), 2010-07 , Vol. 221 , N. 15 , P. 1757-1769

Droits : 2010 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00009/11993/9342.pdf
DOI:10.1016/j.ecolmodel.2010.04.005
http://archimer.ifremer.fr/doc/00009/11993/

Éditeur(s) : ISTPM
Résumé : Following a first mission in 1951 and two cruises on board the research vessel "Président Théodore Tissier" in 1951 and 1952, we provide here a glimpse at fishing in the Isles of St-Pierre et Miquelon and at the development possibilities as they can currently be foreseen.
A la suite d'une première mission effectuée en 1951 et des deux campagnes du navire océanographique «Président Théodore Tissier » en 1951 et 1952, nous donnons ici un bref aperçu sur la pêche aux Iles St-Pierre et Miquelon et sur ses possibilités de développement telles qu'elles peuvent être envisagées actuellement. [OCR NON CONTRÔLE]
Revue des Travaux de l'Institut des Pêches Maritimes (0035-2276) (ISTPM), 1954 , Vol. 18 , N. 2-4 , P. 97-100

Droits : Ifremer
http://archimer.ifremer.fr/doc/1954/publication-6722.pdf
http://archimer.ifremer.fr/doc/00000/6722/

Éditeur(s) : EDP Sciences
Résumé : Selective fishing pressure on more highly valued marine living resources is one of the key factors proposed to explain changes occurring in fish communities and associated landings of commercial fisheries. The aim of this paper is to establish the nature of changes in the landings of French fishing fleets operating in the Bay of Biscay in the period 1973-2002, and whether these changes could be related to the relative economic attractiveness of different fish species. The analysis focuses on trends observed in the landings of all commercial fish species over the last three decades. It is based on data of annual quantities landed and ex-vessel prices compiled from official French landings records, and on bio-geographical descriptors of these species derived from published data. Using simple index numbers and multivariate analysis, we examined changes in total landings in terms of their volume and value, as well as changes in their composition. We show that the composition of landings significantly changed over the study period, with an increase in the proportion of pelagic species, of lower economic value. The average ex-vessel price of production by the fleets tended to decrease from the late 1980s; partly due to a cross-species drop in prices, occurring mainly after 1993, but also to the increased proportion of low-priced species in the landings. This caused a significant drop in the total gross value of production in the second half of the study period.
La pression de pêche sélective sur les ressources marines vivantes de forte valeur est un des facteurs-clés proposés pour expliquer les changements qui surviennent dans la structure des communautés de poisson et dans les débarquements des pêcheries commerciales associés. L'objectif de cet article est d'établir la nature des changements dans les débarquements des flottilles de pêche françaises opérant dans le golfe de Gascogne, et d'examiner les relations entre ces changements et l'attractivité relative des espèces de poisson d'un point de vue économique. L'analyse se concentre sur les tendances observées au cours des trois dernières décennies dans les débarquements de toutes les espèces commerciales de poissons effectués par les flottilles de pêche opérant dans le golfe. Elle s'appuie sur des données concernant les quantités annuelles débarquées, les prix compilés à partir des enregistrements officiels des débarquements français, et les données publiées concernant les caractéristiques biogéographiques des espèces étudiées. En s'appuyant sur des indices simples et une analyse multivariée, on examine les changements des débarquements totaux en volume et en valeur, ainsi que les changements dans leur composition. On montre que la composition des débarquements a fortement changé au cours de la période étudiée, avec un accroissement important de la part des espèces pélagiques, de plus faible valeur. Le prix moyen de la production a eu tendance à décroître depuis la fin des années 1980. Ceci est en partie dû à une chute des prix de l'ensemble des espèces, après 1993, et en partie lié à l'accroissement de la part des espèces de plus faible valeur dans les débarquements. Une baisse importante de la valeur de la production en a découlé sur cette deuxième moitié de la période d'étude.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2008-07 , Vol. 21 , N. 3 , P. 317-327

Droits : 2008 EDP Sciences
http://archimer.ifremer.fr/doc/2008/publication-5926.pdf
DOI:10.1051/alr:2008048
http://archimer.ifremer.fr/doc/00000/5926/

Éditeur(s) : HAL CCSD Elsevier
Résumé : Nominally anhydrous minerals (NAMs) of Earth's mantle can contain hydrogen as atomic impurity in their crystal structures. This hydrogen substantially modifies many physical properties of Earth's mantle rocks. Also, the Earth's deep interior is made of rocks where minerals are separated by nanometer-scale interfaces call grain boundaries and interphase boundaries. These grain boundaries should carefully be considered as a potential hydrogen reservoir as well. I report here an experimental investigation of hydrogen diffusion through grain boundaries in olivine polycrystalline aggregates. Hot-press and diffusion experiments were performed using a gas-medium high-pressure vessel at a confining pressure of 300 MPa, over a temperature range of 1000-1200 degrees C. The diffusion assembly consisted of a dense polycrystalline cylinder of natural olivine from San Carlos (Arizona) mixed with olivine singles crystals of millimeter size. This mixture was couple with a talc cylinder. Ni capsule were used to buffer the oxygen fugacity at Ni-NiO level. Experiment durations varied from 3 min to 4 h. The presence of hydrogen in the sample was quantified using Fourier transform infrared spectroscopy. The calculation of the diffusion coefficients was based on the estimation of the length of polycrystalline solid affected by the diffusion of hydrogen. The absence or presence of hydrogen was recorded by the large olivines behaving here as "hydrogen sensor", which are implanted in the aggregate. The results indicate that effective hydrogen diffusivity which includes grain boundaries effect in olivine aggregate is barely one order of magnitude faster than hydrogen diffusion in an olivine single crystal with a diffusivity similar to 8.5x 10(-10) m(2) s(-1) 1000 degrees C and only twice faster similar to 2.1 x10(-9) m(2) s(-1) 1200 degrees C. Calculations of the diffusion data in relation to the Arrhenius Law, yield an activation energy of similar to 70 +/- 10 kJ mol(-l) . From these effective diffusivities and combined with published diffusion data for olivine single crystals, hydrogen diffusion in grain boundaries is extracted and yield diffusivities almost three order of magnitude faster (similar to 5 x 10(-6) m(2) s(-1) at 1200 degrees C) than in an olivine single crystal at the equivalent high temperature. On geological scales and for coarse-grain rocks, hydrogen diffusivity in grain boundaries is not fast enough to compete with lattice diffusion. The relative large grain size of mantle rocks will ensure a very limited hydrogen transport by effective diffusion, and a good conservation of water-rich zones in the Earth's mantle.
ISSN: 0012-821X

hal-00512821
https://hal.archives-ouvertes.fr/hal-00512821
DOI : 10.1016/j.epsl.2010.04.019