Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: Homologous recombination is the key process that generates genetic diversity and drives evolution. SPO11 protein triggers recombination by introducing DNA double stranded breaks at discreet areas of the genome called recombination hotspots. The hotspot locations are largely determined by the DNA binding specificity of the PRDM9 protein in human, mice and most other mammals. In budding yeast Saccharomyces cerevisae, which lacks a Prdm9 gene, meiotic breaks are formed opportunistically in the regions of accessible chromatin, primarily at gene promoters. The genome-wide distribution of hotspots in this organism can be altered by tethering Spo11 protein to Gal4 recognition sequences in the strain expressing Spo11 attached to the DNA binding domain of the Gal4 transcription factor. To establish whether similar re-targeting of meiotic breaks can be achieved in PRDM9-containing organisms we have generated a Gal4BD-Spo11 mouse that expresses SPO11 protein joined to the DNA binding domain of yeast Gal4. RESULTS: We have mapped the genome-wide distribution of the recombination initiation sites in the Gal4BD-Spo11 mice. More than two hundred of the hotspots in these mice were novel and were likely defined by Gal4BD, as the Gal4 consensus motif was clustered around the centers in these hotspots. Surprisingly, meiotic DNA breaks in the Gal4BD-Spo11 mice were significantly depleted near the ends of chromosomes. The effect is particularly striking at the pseudoautosomal region of the X and Y chromosomes -- normally the hottest region in the genome. CONCLUSIONS: Our data suggest that specific, yet-unidentified factors influence the initiation of meiotic recombination at subtelomeric chromosomal regions.
ISSN: 1471-2164

inserm-00849779
http://www.hal.inserm.fr/inserm-00849779
http://www.hal.inserm.fr/inserm-00849779/document
http://www.hal.inserm.fr/inserm-00849779/file/1471-2164-14-493.pdf
DOI : 10.1186/1471-2164-14-493

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : Society's needs for a network of in situ ocean observing systems cross many areas of earth and marine science. Here we review the science themes that benefit from data supplied from ocean observatories. Understanding from existing studies is fragmented to the extent that it lacks the coherent long-term monitoring needed to address questions at the scales essential to understand climate change and improve geo-hazard early warning. Data sets from the deep sea are particularly rare with long-term data available from only a few locations worldwide. These science areas have impacts on societal health and well-being and our awareness of ocean function in a shifting climate. Substantial efforts are underway to realise a network of open-ocean observatories around European Seas that will operate over multiple decades. Some systems are already collecting high-resolution data from surface, water column, seafloor, and sub-seafloor sensors linked to shore by satellite or cable connection in real or near-real time, along with samples and other data collected in a delayed mode. We expect that such observatories will contribute to answering major ocean science questions including: How can monitoring of factors such as seismic activity, pore fluid chemistry and pressure, and gas hydrate stability improve seismic, slope failure, and tsunami warning? What aspects of physical oceanography, biogeochemical cycling, and ecosystems will be most sensitive to climatic and anthropogenic change? What are natural versus anthropogenic changes? Most fundamentally, how are marine processes that occur at differing scales related? The development of ocean observatories provides a substantial opportunity for ocean science to evolve in Europe. Here we also describe some basic attributes of network design. Observatory networks provide the means to coordinate and integrate the collection of standardised data capable of bridging measurement scales across a dispersed area in European Seas adding needed certainty to estimates of future oceanic conditions. Observatory data can be analysed along with other data such as those from satellites, drifting floats, autonomous underwater vehicles, model analysis, and the known distribution and abundances of marine fauna in order to address some of the questions posed above. Standardised methods for information management are also becoming established to ensure better accessibility and traceability of these data sets and ultimately to increase their use for societal benefit. The connection of ocean observatory effort into larger frameworks including the Global Earth Observation System of Systems (GEOSS) and the Global Monitoring of Environment and Security (GMES) is integral to its success. It is in a greater integrated framework that the full potential of the component systems will be realised. Crown Copyright (C) 2011 Published by Elsevier Ltd. All rights reserved.
Progress In Oceanography (0079-6611) (Pergamon-elsevier Science Ltd), 2011-10 , Vol. 91 , N. 1 , P. 1-33

Droits : 2011 Published by Elsevier Ltd. All rights reserved.
http://archimer.ifremer.fr/doc/00044/15557/15923.pdf
DOI:10.1016/j.pocean.2011.05.001
http://archimer.ifremer.fr/doc/00044/15557/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Experimentally Assisted Molecular Modelling (EAMM) is an original approach for predicting the structure of organic micro-crystals and deducing their habit in the presence of various solvents and additives. It is applied here in the case of n-octylamino-nitrobenzoxadiazole (nOA-NBD), a fluorescent compound. This general approach is first of all described and validated by its blind application to three known and closely-related crystals. Then, the whole process is applied to predict the molecular crystal generated by n-octylamino-NBD, including the molecule conformation, its structure (cell parameters, molecular packing, X-ray powder diagrams) and its theoretical plus actual habits in the presence of a solvent (p-xylene) and two additives (acetic acid and n-dodecane). The conformation of the predicted molecule is validated by comparison with two similar molecules embedded in observable crystals. Then, the choice between two proposed structures (with the same energy and two equiprobable packings) is based on the comparison between experimental and re-computed X-ray powder diffraction diagrams, and also on the interpretation of an actual TEM image in the light of the proposed cell parameters. This choice is confirmed by the comparison between the vapour-grown face development (proposed by the BFDH or the attachment energy models) and the actual face development in a pure solvent. Finally, the actual habit deduced from comparing the crystal attachment energy with the adsorption energy of solvent or additive molecules is validated by SEM images of NBD micro-crystals in presence of the solvent alone or in presence of both additives. In conclusion, the EAMM approach appears to be a decisive tool for quickly simulating structural and habit properties of the molecular crystals, accessible or not by experimentation. Thus, a numerical selection of molecules becomes possible in view of deriving organic materials with predetermined properties, such as the fluorescence properties of the compound considered in the present study.
ISSN: 0022-0248

hal-00857894
https://hal.archives-ouvertes.fr/hal-00857894
DOI : 10.1016/j.jcrysgro.2011.07.035

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Background We conducted this systematic review and meta-analysis to address the open question of a possible association between the socioeconomic level of the neighborhoods in which pregnant women live and the risk of Congenital Heart Defects (CHDs), Neural Tube Defects (NTDs) and OroFacial Clefts (OFCs). Methods We searched MEDLINE from its inception to December 20th, 2015 for case-control, cohort and ecological studies assessing the association between neighborhood socioeconomic level and the risk of CHDs, NTDs and the specific phenotypes Cleft Lip with or without Cleft Palate (CLP) and Cleft Palate (CP). Study-specific risk estimates were pooled according to random-effect and fixed-effect models. Results Out of 245 references, a total of seven case-control studies, two cohort studies and two ecological studies were assessed in the systematic review; all studies were enrolled in the meta-analysis with the exception of the two cohort studies. No significant association has been revealed between CHDs or NTDs and neighborhood deprivation index. For CLP phenotype subgroups, we found a significantly higher rate in deprived neighborhoods (Odds Ratios (OR) = 1.22, 95% CI: 1.10, 1.36) whereas this was not significant for CP phenotype subgroups (OR = 1.20, 95%CI: 0.89, 1.61). Conclusion In spite of the small number of epidemiological studies included in the present literature review, our findings suggest that neighborhood socioeconomic level where mothers live is associated only with an increased risk of CLP phenotype subgroups. This finding has methodological limitations that impede the formulation of firm conclusions, and further investigations should confirm this association. © 2016 Deguen et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
ISSN: 1932-6203

hal-01406070
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01406070
DOI : 10.1371/journal.pone.0159039
PUBMED : 27783616

Éditeur(s) : HAL CCSD
Résumé : International audience
Given the clinical success of commercial amphotericin B lipid products, investigators have begun making generic formulations of liposomal amphotericin B. Generic medicines are an attractive approach to help decrease the cost and accessibility to healthcare, provided that appropriate studies are performed to ensure bioequivalence with the parent product. This is of particular concern for liposomal drugs such as amphotericin B where liposomes are used as a carrier system to reduce the toxicity of the active agent. A favorable therapeutic profile for this form of the drug has to include the proper chemical composition along with strictly controlled manufacturing processes. Studies have shown that a comparison of liposomal amphotericin B products with different or the same chemical compositions, using different methods of production, will vary in size, and have significantly dissimilar in vitro and in vivo toxicities along with reduced efficacy. These results underscore the importance of establishing appropriate bioequivalence testing for liposome products to ensure uniformity of their therapeutic index
Medical Mycology

hal-01259233
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01259233
DOI : 10.1093/mmy/myv111
PUBMED : 26768369

Éditeur(s) : HAL CCSD
Résumé : International audience
Energy is a critical enabler. In tropical countries, access to modern electricity is vital to reducing poverty and improving health, increasing productivity and promoting economic growth. However, the International Energy Agency reported in 2015 more than 1.2 billion people still did not have access to electricity in 2013, around 80% of them live in developing and tropical countries. Then, the same agency report also in 2016 around 6.5 million premature deaths each year can be attributed to air pollution. Therefore, it is time to support appropriate renewable energy developments, particularly the river hydrokinetic developments seems to be a better solution in tropics because of large and powerful rivers in these areas.In French Guiana, 35% of the inland populations are still not connected to the electrical grid (Région Guyane, 2012). This could be ascribed to the fact that extending grid wires hundreds of kilometers through difficult terrain and thick jungles just to serve a small remote village is economically unviable initiative (Ajan et al., 2003; Anyi et al., 2010). As an alternative, French Guiana and most of the tropical countries resort to diesel-powered generators which requires significant imports of expensive fuel, difficult to bring into remote areas (Région Guyane, 2012).This works proposes guidelines to estimate river hydrokinetic fluxes in the vicinity of remote communities in tropics. The method is applied to identify and characterise potential sites along an important reach of the Maroni river in French Guiana. First, a novel method to carry out river terrain elevation model is presented and some results about the Maroni river are reported. It begins from how to conduct ADCP survey, which corrections on them should be made and ends up by interpolating bathymetry over curvilinear profiles which handle the flow lines. That approach involves how mutli-source data (sparse ADCP-cross profiles, incomplete LiDAR tiles and hydroligic data) are merged and combined to estimate local cross section shape, maximum water depth and carry out cross profile in ungauged sites.This is followed by a deep characterisation about time-evolution of hydrokinetic fluxes field in the areas of interest by implementation of a full 2D hydrodynamic model (TELEMAC2D) over an important reach of the Maroni river. To optimise computational cost, river sections outside the areas of interest are modelled as a porous media where only the flows variables up and down stream must fulfil the field data.
CAS
Deshaies, Guadeloupe

hal-01514240
https://hal.archives-ouvertes.fr/hal-01514240

Éditeur(s) : HAL CCSD Taylor & Francis
Résumé : The diamond anvil cell (DAC) is a fundamental device used to explore the properties of materials under extreme pressure and temperature (P/T) conditions. In the past years, simultaneous high P/T DAC experiments using the resistively heated DAC (RH-DAC) techniques have been developed for studying materials properties in a wide P/T range. However, the mechanical instability of metallic gaskets used for sample confinement at high P/T conditions remains a limiting factor for exploiting the accessible P/T range of the RH-DAC. In this study, we present a new gasket configuration that overcomes these limitations. It is based on an amorphous boron-epoxy mixture inserted in a rhenium gasket. We show how these gasket inserts stabilize the sample chamber over a wide P/T range, allowing monitoring sample properties using X-ray diffraction and absorption spectroscopy up to 50GPa and 1620K.
ISSN: 0895-7959

hal-01608425
https://hal.archives-ouvertes.fr/hal-01608425
DOI : 10.1080/08957959.2016.1245297
PRODINRA : 387347

Éditeur(s) : HAL CCSD
Résumé : International audience
Objective: The objective of this study was to identify the factors associated with presentation for care with CD4 cell count <200/mm3. Design: A Retrospective monocentric cohort study of the Guadeloupe section of French Hospital Database for HIV was conducted. Methods: Group 1 Cohort (CD4 <200/mm3, n=1076), Group 2 (CD4 200-500, n=973) and Group 3 (CD4 >≥ 500/ mm3, n=627) patients were included between 1 January 1988 and 31 December 2009. Factors associated with late presentation (CD4 count <200 cells/μL) were assessed using descriptive statistics and ordered multivariable logistic regression. Results: At the time of diagnosis, 40.21% of patients had than less 200 CD4 lymphocytes/mm3. Age older than 30 years OR: 1.55[1.14-2.10], p=0.005, male gender OR: 1.83[1.58-2.12], p<0.0001, access to care before 1992 OR: 1.56[1.03-2.02], p=0.038 and alcohol use OR: 8.80[2.26-34.36], p=0.002 were independently associated with a low CD4 cell count. Conclusion: The findings of this study (underline the need to expand HIV testing beyond the usual facilities) may be of value in helping to achieve earlier access to treatment in HIV-infected patients in order to minimize the individual risk of morbidity and mortality.
J AIDS Clinic Res

inserm-00915176
http://www.hal.inserm.fr/inserm-00915176
http://www.hal.inserm.fr/inserm-00915176/document
http://www.hal.inserm.fr/inserm-00915176/file/2012_Elenga_-_Risk_Factors_for_Late_Presentation_for_Care_among_HIV-Infected_Patients_in_guadeloupe_1988_2009.pdf
DOI : 10.4172/2155-6113.1000166

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : Publication Inra prise en compte dans l'analyse bibliométrique des publications scientifiques mondiales sur les Fruits, les Légumes et la Pomme de terre. Période 2000-2012. http://prodinra.inra.fr/record/256699
Spontaneous gene flow between wild and cultivated chicory, Cichorium intybus L., may have implications for the genetic structure and evolution of populations and varieties. One aspect of this crop-wild gene flow is the dispersal of transgenes from genetically modified varieties, e.g. gene flow from GM chicory to natural chicory could have unwanted consequences. With the purpose to identify and quantify crop-wild gene flow in chicory, we analysed introgression in 19 wild chicory populations and 16 accessions of chicory varieties and landraces distributed across Northern, Central and Mediterranean Europe. The analysis used 281 AFLP markers and 75 SSAP markers giving a total of 356 polymorphic markers. Results from model based assignments with the program STRUCTURE indicated many incidents of recent gene flow. Gene flow was observed both between cultivars and wild populations, between landraces and wild populations, between different wild populations as well as between cultivars. Population structure visualized by distance-based clustering showed a North-South geographical structuring of the wild populations, and a general grouping of the cultivars corresponding to known origin. The results indicated, however, that the structuring between the two groups of wild and cultivated types was weak. As crop and wild recipients are genetically close and genes are transferred between the two types rather frequently, focus on mitigating crop-wild gene flow should be increased, before transgenic varieties are cultivated openly.
ISSN: 0925-9864

hal-01032184
https://hal.archives-ouvertes.fr/hal-01032184
DOI : 10.1007/s10722-008-9375-1

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Sur la base d’une modélisation stylisée d’une économie bi-sectorielle fréquentée par les touristes la présentation rappelle que le lien tourisme-pauvreté peut être lu selon une causalité inverse ; de la pauvreté vers le tourisme. Cette lecture « inversée » s’appuie sur deux éléments : le tourisme impose nécessairement un choix aux résidents : quelle est la part du produit local à laisser aux visiteurs ? la richesse donc la pauvreté influe sur la volonté de réception des résidents, quand le flux touristique est contraint.
Based on a stylized model of a two-sector economy frequented by tourists, this paper argues that the tourism-poverty link may be understood in a reverse causality; from poverty to tourism. This "reverse" understanding is based on two elements: Tourism necessarily presents a choice for residents: what part(s) of the local product should tourists be allowed access to? When the flow of tourism is constrained, the willingness of local residents to accommodate tourists is more heavily influenced by quality of life.

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6477
http://journals.openedition.org/etudescaribeennes/6477

Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
Coral reef fisheries support the development of local and national economies and are the basis of important cultural practices and worldviews. Transitioning economies, human development, and environmental stress can harm this livelihood. Here we focus on a transitioning social-ecological system as a case study (Moorea, French Polynesia). We review fishing practices and three decades of effort and landing estimates with the broader goal of informing management. Fishery activities in Moorea are quite challenging to quantify because of the diversity of gears used, the lack of centralized access points or markets, the high participation rates of the population in the fishery, and the overlapping cultural and economic motivations to catch fish. Compounding this challenging diversity, we lack a basic understanding of the complex interplay between the cultural, subsistence, and commercial use of Moorea's reefs. In Moorea, we found an order of magnitude gap between estimates of fishery yield produced by catch monitoring methods (2 t km −2 ∼ year −1) and estimates produced using consumption or participatory socioeconomic consumer surveys (∼24 t km −2 year −1). Several lines of evidence suggest reef resources may be overexploited and stakeholders have a diversity of opinions as to whether trends in the stocks are a cause for concern. The reefs, however, remain ecologically resilient. The relative health of the reef is striking given the socioeconomic context. Moorea has a relatively high population density, a modern economic system linked into global flows of trade and travel, and the fishery has little remaining traditional or customary management. Other islands in the Pacific in similar contexts in Polynesia such as Hawaii, that continue to develop economically, may have small-scale fisheries that increasingly resemble Moorea. Therefore, understanding Moorea's reef fisheries may provide insight into their future.
ISSN: 2296-7745

Droits : http://creativecommons.org/licenses/by/
hal-01325804
https://hal-univ-perp.archives-ouvertes.fr/hal-01325804
https://hal-univ-perp.archives-ouvertes.fr/hal-01325804/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01325804/file/fmars-03-00070.pdf
DOI : 10.3389/fmars.2016.00070

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Ce numéro de la Revue Études Caribéennes s’intéresse aux liens qui unissent et opposent l’activité touristique et les ressources naturelles, particulièrement dans les pays du Sud. Dans un contexte de médiatisation accrue des enjeux liés à la biodiversité et aux menaces qui pèsent sur elle, le tourisme – et particulièrement l’écotourisme – est souvent présenté comme un moyen de concilier la conservation et le développement. Les autorités locales, malgré l’existence d’un cadre réglementaire propre à l’environnement, ne disposent souvent pas de moyens suffisants (humains, matériels et financiers) pour gérer la croissance de la fréquentation des aires protégées et ses effets potentiels sur l’environnement naturel et humain. En réponse à cette problématique, les institutions financières internationales et les organismes associés proposent aux pays du Sud de trouver un équilibre entre une fréquentation de masse et une fréquentation de bas volume afin de développer « un tourisme de haute qualité ». Même si cela était possible, quels critères peuvent être utilisés pour « cesser » le développement d’un pôle ou d’une région touristique ? L’évolution géographique « naturelle » du tourisme – c’est-à-dire essentiellement basée sur la mise en tourisme de la nature et sur l’accessibilité de ces ressources – pose déjà des problèmes politiques et économiques importants. Les gouvernements (central, régional ou local) sont difficilement en mesure de réaliser un arbitrage de long terme dans ce contexte qui permettrait l’adéquation entre le développement touristique et la préservation des espaces naturels. La relation entre le tourisme et les ressources naturelles s’articule souvent autour de deux objectifs spécifiques, soient : développer un produit à moindre impact, mais aux dépenses élevées et viser un volume de visiteurs qui contribue aux profits économiques, mais qui amène le moins de dégradation écologique/sociale possible. Cette position résume à elle seule à la fois la complexité et les multiples paradoxes dans lesquels s’insère la mise en tourisme de la nature. Les dynamiques sociales et l’extension de l’appropriation privative des espaces naturels et agricoles posent la problématique des modes de gestion des ressources communes et de leur pérennité, particulièrement dans les pays du Sud. Dans ce contexte, les objectifs, les ressources et les stratégies des principaux acteurs concernés sont difficilement conciliables et le système de relation qu’il induit n’est pas nécessairement en phase avec les finalités poursuivies. This edition of Revue Etudes Caribéennes focuses on the links that unite and oppose tourism and natural resources, specifically in southern countries. In a context of increased media coverage of issues related to biodiversity (including threats to it), tourism – particularly ecotourism – is often presented as a mean to reconcile conservation and development. Local authorities, despite the existence of a specific environmental regulatory framework, often have insufficient resources (human, material, financial) to manage the increase of visits to protected areas, and the potential impact of these visits on natural and human environments. In response to this problem, international financial institutions and associated organizations offer to try to find a balance between mass attendance and low volume attendance in order to develop "high quality tourism" in southern countries. Even if this were possible, what criteria can be used to "stop" the development of a tourist site or region for environmental reasons? The “natural” geographic evolution of tourism – in other words, essentially based on the development of nature tourism and accessibility of these resources – already causes huge political and economic problems. Governments (central, regional or local) are hardly able to arbitrate over the long term in a context that would allow finding a balance between tourism development and preservation of natural areas. The relationship between tourism and natural resources often revolves around two specific objectives: to develop a product with less impact, but at high cost and a target volume of visitors that contributes to economic profits, but that causes the least ecological / social degradation possible. This position epitomizes both the complexity and the many paradoxes of nature tourism development. Social interactions and the expansion of private appropriation of natural and agricultural areas highlight the challenges of managing common resources and their sustainability, especially in the southern countries. In this context, development objectives, natural resources and the strategies of key stakeholders are difficult to reconcile, and the relationship between leading actors do not always correspond with these objectives. Esta edición de “Revue Études Caribéennes” se interesa a los lazos que unen y separan la actividad turística y los recursos naturales, particularmente en los países del sur. En un contexto de mediatización en alza sobre los objetivos ligados a la biodiversidad y a las amenazas que pesan sobre ella, el turismo – y particularmente el ecoturismo – está a menudo presentado como un medio de conciliar la conservación y el desarrollo. Las autoridades locales, pese a la existencia de un cuadro propio de reglamentación al medio ambiente, no disponen habitualmente de suficientes medios (humanos, materiales y financieros) para controlar el aumento de visitas en las áreas protegidas y sus efectos potenciales sobre el ambiente natural y humano. En respuesta a esta problemática, las instituciones financieras internacionales y los organismos asociados proponen a los países del sur encontrar un equilibrio entre la frecuentación de masas y una frecuentación de bajo volumen con el objetivo de desarrollar “un turismo de alta calidad”. Incluso si fuese posible, ¿qué criterios podrían ser utilizados para “cesar” el desarrollo de un centro o una región turística? La evolución geográfica “natural” del turismo – esencialmente basada en el desarrollo del turismo de la naturaleza y el acceso de sus recursos – crean problemas políticos y económicos enormes. Los gobiernos (central, regional o local) tienen dificultades para realizar un arbitraje a largo plazo en este contexto que permitiría la adecuación entre el desarrollo turístico y la preservación de los espacios naturales. La relación entre el turismo y los recursos naturales se articula a menudo alrededor de dos objetivos específicos, sean: desarrollar un producto con mínimo impacto, pero con gastos elevados y aspirar a un volumen de visitantes que contribuya a las ganancias económicas, pero que traiga la menor degradación ecológica/social posible. Esta posición resume la complejidad y las múltiples paradojas en las cuales se encaja la puesta del turismo en la naturaleza. Las dinámicas sociales y la extensión de la apropiación privativa de los espacios naturales y agrícolas plantean una problemática en los modos de gestión de los recursos comunes y de su perennidad, particularmente en los países del sur. En este contexto, los objetivos, los recursos y las estrategias de los principales actores concernidos son difícilmente conciliables y el sistema de relación que induce no es necesariamente en la misma fase con los objetivos perseguidos.

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.7884
http://journals.openedition.org/etudescaribeennes/7884

Éditeur(s) : HAL CCSD American Society for Microbiology
Résumé : International audience
Coronaviruses (CoVs) have shown neuroinvasive properties in human and animal secondary to replication in peripheral organ but the mechanism of neuroinvasion is unknown. The major aim of our work was to evaluate the ability of CoVs to enter the central nervous system (CNS) through the blood brain barrier (BBB). Using the high hepatotropic mouse hepatitis virus (MHV) type 3, its attenuated variant 51.6-MHV3, showing low tropism for endothelial cells, and the low hepatotropic MHV-A59 strains from murine coronavirus group, we investigated the viral-induced dysfunctions of BBB in vivo and in brain microvascular endothelial cells (BMECs) in vitro. We report here a MHV strain-specific ability to cross the BBB during acute infection according to their virulence for liver. Brain invasion was only observed in MHV3-infected mice and correlated with enhanced BBB permeability associated with decreased expression of ZO-1, VE-cadherin and occludin but not claudin-5 in the brain or in cultured BMECs. BBB breakdown in MHV3 infection was not related to production of barrier-dysregulating inflammatory cytokines or chemokines by infected BMECs but rather to a downregulation of barrier protective IFN-β production. Our findings highlight the importance of IFN-β production by infected BMECs in preserving BBB function and preventing access of blood-borne infectious viruses to the brain. IMPORTANCE: Coronaviruses (CoVs) infect several mammals including humans and are associated with respiratory, gastrointestinal and/or neurological diseases. Some evidences suggest that human respiratory CoVs may show neuroinvasive properties. Indeed, the SARS-CoV, causing severe acute respiratory syndrome, and the CoVs OC43 and 229E were found in the brains of SARS and multiple sclerosis patients respectively. These finding suggest that hematogenous spread CoVs may gain access to CNS at the BBB level. Herein we report for the first time that CoVs exhibit ability to cross the BBB according to strain virulence. BBB invasion by CoVs correlates with viral-induced disruption of tight junctions on BMECs, leading to BBB dysfunction and enhanced permeability. We provide evidence that production of IFN-β by BMECs during CoV infection may prevent BBB breakdown and brain viral invasion
ISSN: 0022-538X

hal-01187308
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01187308
DOI : 10.1128/JVI.01501-15
PUBMED : 26202229

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : This paper aims to explore the complex relationships between international tourism and the production and exchange of 'nature' in tropical countries. It is based on data gathered through an ethnographic case study approach on the changing aesthetic, economic and symbolic values attached to the coral reef in the tropical island of La Réunion, Indian Ocean. The analysis of this data shows that, from the point where the collective imaginaries in the Western world associate a 'magic' value with corals, an international institutionalisation process takes place in order to protect and preserve coral reefs and make them touristically accessible. This raises important issues related to the challenges the new value of tropical nature represents for the communication and exchange systems of communities in tropical countries. The paper first explores the meanings of the spiritual and religious value Western societies attribute to coral reefs. It then discusses the institutionalisation of tropical nature by international organisations and the problem of parallel land and natural space ownership systems in La Réunion. After that, it deconstructs the mystification policy of the coral reef operated by local institutions in La Réunion and examines the meaning of protecting the coral reef as a socially embedded 'communicative action' in La Réunion.
L’objectif de cette étude est d’explorer les relations complexes entre d'une part le tourisme international et d'autre part la production et l'échange de 'nature' dans des pays tropicaux. L'étude est basée sur des données recueillies à travers une approche ethnographique des valeurs esthétiques, économiques et symboliques attachées au récif corallien de l'île de La Réunion, dans l'océan Indien. L'analyse de ces données montre qu'à partir du moment où les imaginaires collectifs de l'Occident associent les coraux à une valeur 'magique', un processus d'institutionnalisation internationale s’engage dans le but de protéger, préserver et rendre accessibles au tourisme les récifs coralliens. Ceci implique des problématiques importantes liées à la mise à l'épreuve des systèmes de communication et d'échange des sociétés dans les pays tropicaux. L'étude explore d'abord la signification des valeurs spirituelles et religieuses qu'attribuent les sociétés occidentales aux récifs coralliens. Ensuite, elle discute l'institutionnalisation de la nature tropicale par des organisations internationales ainsi que le problème de l'existence de différents systèmes de gestion foncière à La Réunion. Enfin, l'étude déconstruit la politique de mythification du récif corallien mise en œuvre par des institutions locales à La Réunion et examinera la signification de 'protéger l'environnement' en tant qu'action communicante définie par les systèmes de communication et d'échange réunionnais.
Réunion

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.1112
http://journals.openedition.org/etudescaribeennes/1112

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
Nowadays, technological advances in satellite imagery measurements as well as the development of dense geodetic and seismologic networks allow for a detailed analysis of surface deformation associated with active fault seismic cycle. However, the study of earthquake dynamics faces several limiting factors related to the difficulty to access the deep source of earthquake and to integrate the characteristic time scales of deformation processes that extend from seconds to thousands of years. To overcome part of these limitations and better constrain the role and couplings between kinematic and mechanical parameters, we have developed a new experimental approach allowing for the simulation of strike-slip fault earthquakes and analyze in detail hundreds of successive seismic cycle. Model rheology is made of multilayered visco-elasto-plastic analog materials to account for the mechanical behavior of the upper and lower crust and to allow simulating brittle/ductile coupling, postseismic deformation phase and far-field stress transfers. The kinematic evolution of the model surface is monitored using an optical system, based on subpixel spectral correlation of high-resolution digital images. First, results show that the model succeed in reproducing the deformation mechanisms and surface kinematics associated to the main phases of the seismic cycle indicating that model scaling is satisfactory. These results are comforted by using numerical algorithms to study the strain and stress distribution at the surface and at depth, along the fault plane. Our analog modeling approach appears, then, as an efficient complementary approach to investigate earthquake dynamics.
ISSN: 0278-7407

hal-01174176
https://hal.archives-ouvertes.fr/hal-01174176
DOI : 10.1002/2014TC003701

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
The spatio‐temporal dynamics of disease spread provide an area of acute scientific interest but substantial analytic challenges. Analytic approaches need to draw from current knowledge of disease systems yet be flexible enough to provide targeted inference without restrictive assumptions. We explore this balance in detail with respect to the observed pattern of spread of sugarcane yellow leaf virus, the causal agent of yellow leaf disease. This disease affects cultivated sugarcane plants and spreads via an aphid vector (Melanaphis sacchari). The system is of considerable economic interest, but presents several analytic complications. First, the plants begin as well separated individuals that grow into large plants with overlapping leaf canopies enabling increased vector access between neighbouring plants. The overlap between neighbouring plants first occurs within rows and then extends between rows, presenting another interesting spatial component to consider when modelling the propagation of infection. Second, the vector initially flies between plants but at some point sheds wings and shifts to walking between plants. We are particularly interested in how these two features of the system and their interrelation may impact the spatial spread of disease over time. In addition, we also explore the impact of potential immigration of infected vectors from outside of the study area. We treat our observed cane field as a spatial grid with regular spacing between rows and smaller spacing within rows. Our data consist of observed disease status of each of 1643 plants at each of six time points. We provide descriptive summaries of the temporal evolution of spatial pattern in infection, then propose hierarchical models to describe the pattern and capture the influence of the ecological and environmental factors listed above.
ISSN: 0143-9782

hal-00684235
https://hal.archives-ouvertes.fr/hal-00684235

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Imaging deep active volcanic areas remains a challenge in our understanding of their activity and evolution, especially in subduction zones. Study of magnetic anomalies is appropriate to access such dynamics in depth. The magnetic anomaly pattern of the Lesser Antilles Arc (LAA) subduction is studied through Curie Point Depth (CPD), interpreted as the depth of the 580 °C isotherm, and developed to better assess the deep thermal structure of the arc. The depth of the estimated CPD exhibits a complex topography. Keeping in mind the overall uncertainty associated with this method, a main doming is evidenced below the Guadeloupe archipelago. Its apex is shifted towards the ancient arc, suggesting a very hot state of the fore-arc/arc domain. To better understand the LAA thermal state, we perform 2D thermo-mechanical simulations of the subduction zone. Recalling that magnetite is a serpentinization by-product, we simulate water transfer triggered by slab dehydration to test the assumption of fore-arc serpentinization suggested by the positive magnetic anomaly in the vicinity of the Guadeloupe archipelago. In this area, the subduction-induced arc lithosphere hydration and related weakening trigger a fast heating of the upper plate by basal convective removal. This process of fast arc lithosphere thinning may apply where simultaneously the volcanic arc is split in two and normal convergence is high enough. As serpentinization strongly decreases P-wave velocity, we propose a new interpretation of a published seismic profile below Guadeloupe. The seismic layer previously interpreted as the arc lower crust may rather be a layer of serpentinized mantle, as supported by spatial correlations between gravimetric and magnetic anomalies. Consequently, at the scale of Guadeloupe Island, the fore-arc Moho would be shallower than initially assumed, with a dome shape more consistent with both the extensive deformation active since the Oligocene in the inner fore-arc and the CPD doming.
ISSN: 0040-1951

Droits : http://creativecommons.org/licenses/by-nc-nd/
insu-01505300
https://hal-insu.archives-ouvertes.fr/insu-01505300
https://hal-insu.archives-ouvertes.fr/insu-01505300/document
https://hal-insu.archives-ouvertes.fr/insu-01505300/file/Gailler-2017.pdf
DOI : 10.1016/j.tecto.2017.03.014

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
In mutualisms, each interacting species obtains resources from its partner that it would obtain less efficiently if alone, and so derives a net fitness benefit. In exchange for shelter (domatia) and food, mutualistic plant-ants protect their host myrmecophytes from herbivores, encroaching vines and fungal pathogens. Although selective filters enable myrmecophytes to host those ant species most favorable to their fitness, some insects can by-pass these filters, exploiting the rewards supplied whilst providing nothing in return. This is the case in French Guiana for Cecropia obtusa (Cecropiaceae) as Pseudocabima guianalis caterpillars (Lepidoptera, Pyralidae) can colonize saplings before the installation of their mutualistic Azteca ants. The caterpillars shelter in the domatia and feed on food bodies (FBs) whose production increases as a result. They delay colonization by ants by weaving a silk shield above the youngest trichilium, where the FBs are produced, blocking access to them. This probable temporal priority effect also allows female moths to lay new eggs on trees that already shelter caterpillars, and so to occupy the niche longer and exploit Cecropia resources before colonization by ants. However, once incipient ant colonies are able to develop, they prevent further colonization by the caterpillars. Although no higher herbivory rates were noted, these caterpillars are ineffective in protecting their host trees from a pathogenic fungus, Fusarium moniliforme (Deuteromycetes), that develops on the trichilium in the absence of mutualistic ants. Therefore, the Cecropia treelets can be parasitized by two often overlooked species: the caterpillars that shelter in the domatia and feed on FBs, delaying colonization by mutualistic ants, and the fungal pathogen that develops on old trichilia. The cost of greater FB production plus the presence of the pathogenic fungus likely affect tree growth.
PLoS ONE

hal-00912399
https://hal.archives-ouvertes.fr/hal-00912399
https://hal.archives-ouvertes.fr/hal-00912399/document
DOI : 10.1371/journal.pone.0020538
OATAO : 10156

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Access to health care is a global public problem. In French Guiana, there exists social inequalities which are specially marked amongst immigrants who make up a third of the population. Health care inequalities are prevalent. The objective of this study was to determine factors associated with why health care amongst the poor population of Cayenne was renounced.Study design The study was cross sectional. It focused on knowledge, attitudes, practices and beliefs of the population living in poor neighborhoods of the Cayenne area. Methods: Populations coming at the Red Cross mobile screening unit in poor urban areas of Cayenne were surveyed from July 2013 to June 2014. Structured questionnaires consisted of 93 questions. Written informed consent was requested at the beginning of the questionnaire. The predictors for renouncing medical care were determined using logistic regression models and tree analysis. Results: Twenty percent of persons had renounced care. Logistic regression showed that renouncement of health care was negatively associated with having no regular physician Adjusted Odds Ratio (AOR)=0.43 (95%CI=0.24-0.79) and positively associated with being embarrassed to ask certain questions AOR=6.81 (95%CI=3.98-11.65) and having been previously refused health care by a doctor AOR=3.08 (95%CI=1.43-6.65) . Tree analysis also showed that three of these variables were linked to renouncement, with feeling shy to ask certain questions as the first branching.Conclusion: Although most people felt it was easy to see a doctor, one in five had renounced health care. The variables identified by the models suggest vulnerable persons generally had previous negative encounters with the health system and felt unwanted or non eligible for healthcare. Health care mediation and welcoming staff may be simple solutions to the above problems which were underscored in our observations.
ISSN: 1472-6963

hal-01288656
https://hal.archives-ouvertes.fr/hal-01288656
https://hal.archives-ouvertes.fr/hal-01288656/document
https://hal.archives-ouvertes.fr/hal-01288656/file/Predictive%20factors%20for%20renouncing%20to%20care%20in%20FG.pdf
PUBMEDCENTRAL : PMC4731954

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La Grande Barrière de Corail s’étend sur 2000 kilomètres le long de la côte orientale de l’État du Queensland en Australie. Chaque année, le « Great Barrier Reef Marine Park », le plus grand parc marin du monde établi en 1975, compte plus de 1,8 millions d’entrées. Depuis 1981, cet ensemble d’îles et de récifs est aussi inscrit sur la Liste du Patrimoine mondial de l’UNESCO. La mise en tourisme de la région, qui s’est faite progressivement autour de l’exploitation de cette attraction, n’a pas été uniforme. Ce texte a pour objectif d’aider à comprendre la différentiation spatiale du développement touristique dans la région. Une analyse des changements dans la perception du récif montre que l’importance de la préoccupation environnementale est ancienne dans la gestion de cet ensemble, mais qu’elle a évolué. L’augmentation de la fréquentation de la Grande Barrière par les touristes est ensuite replacée dans le contexte de la croissance du tourisme australien. Enfin l’importance des conditions techniques et du cadre légal de l’accès aux récifs sont envisagés pour expliquer la polarisation actuelle du développement autour des zones de Cairns/Port Douglas et des îles Whitsunday.
The Great Barrier Reef extends over 2000 kilometres along the eastern coast of Queensland in Australia. Every year, the "Great Barrier Reef Marine Park", the biggest marine park in the world established in 1975, counts more than 1.8 million entries. Since 1981, this group of islands and reefs is also registered on the UNESCO World Heritage List. The touristification of the region, which was gradually achieved around the operation of this attraction, was not uniform. This text has for objective to help to understand the spatial differentiation of the tourist development in the area. An analysis of the changes in the perception of the reef show that the importance of the environmental concern is well established in the management of this region, but that it has evolved. The increase of the frequentation of the Great Barrier Reef by tourists is replaced in the context of Australian tourism growth. Finally, the importance of the technical conditions and the legal context of access to the reef is envisaged to explain the current polarization of the development around the Cairns / Port Douglas area and Whitsunday Islands area.
Queensland

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.1152
http://journals.openedition.org/etudescaribeennes/1152