Éditeur(s) : HAL CCSD Public Library of Science
Résumé : Simple sequence repeat (SSR) markers are widely used tools for inferences about genetic diversity, phylogeography and spatial genetic structure. Their applications assume that variation among alleles is essentially caused by an expansion or contraction of the number of repeats and that, accessorily, mutations in the target sequences follow the stepwise mutation model (SMM). Generally speaking, PCR amplicon sizes are used as direct indicators of the number of SSR repeats composing an allele with the data analysis either ignoring the extent of allele size differences or assuming that there is a direct correlation between differences in amplicon size and evolutionary distance. However, without precisely knowing the kind and distribution of polymorphism within an allele (SSR and the associated flanking region (FR) sequences), it is hard to say what kind of evolutionary message is conveyed by such a synthetic descriptor of polymorphism as DNA amplicon size. In this study, we sequenced several SSR alleles in multiple populations of three divergent tree genera and disentangled the types of polymorphisms contained in each portion of the DNA amplicon containing an SSR. The patterns of diversity provided by amplicon size variation, SSR variation itself, insertions/deletions (indels), and single nucleotide polymorphisms (SNPs) observed in the FRs were compared. Amplicon size variation largely reflected SSR repeat number. The amount of variation was as large in FRs as in the SSR itself. The former contributed significantly to the phylogenetic information and sometimes was the main source of differentiation among individuals and populations contained by FR and SSR regions of SSR markers. The presence of mutations occurring at different rates within a marker's sequence offers the opportunity to analyse evolutionary events occurring on various timescales, but at the same time calls for caution in the interpretation of SSR marker data when the distribution of within-locus polymorphism is not known.
ISSN: 1932-6203

hal-01190764
https://hal.archives-ouvertes.fr/hal-01190764
PRODINRA : 214530
PUBMED : 22808236
DOI : 10.1371/journal.pone.0040699

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We have performed tri-axial compression experiments on olivine aggregates at 900 °C and at a confining pressure of 300 MPa in a high-resolution gas-medium mechanical testing apparatus. Deformation at two different constant strain rates (1.1 × 10− 5 s− 1 and 3.4 × 10− 4 s− 1) yields continuous hardening, reaching maximal differential stresses of 930 and 1076 MPa, respectively, before sample failure at ca. 10% strain. The deformed samples were characterized by electron backscatter diffraction (EBSD) and transmission electron microscopy (TEM). Crystallographic preferred orientations (CPO) are weak but reveal an alignment of the [010] axes around the compression direction and some concentration of [001] and [100] axes normal to it. TEM observations confirm plastic deformation by dislocation glide, with both [001] and [100] Burgers vectors. Electron tomography, performed for the first time on deformed fined-grained olivine, shows that [001] dislocations glide extensively on {110} and {130} planes, in complement to the (010) and (100) glide planes often reported at high temperatures. [100] dislocations glide mostly on (010), but {011} and {041} planes are also activated. The experimental CPO and relative activity of slip systems are well reproduced by viscoplastic self-consistent simulations in which all [100] and [001] slip systems have similar strengths. They are also consistent with olivine CPO from natural samples deformed at low temperature. Comparison of the present mechanical results to those obtained for olivine single-crystals at similar conditions shows that at low temperature (below 1100 °C) and high stress (> 300 MPa) polycrystalline olivine has a more complex mechanical behavior than single crystals. However, both datasets advocate for a much weaker dry mantle lithosphere than previously thought.
ISSN: 0040-1951

hal-01053513
https://hal.archives-ouvertes.fr/hal-01053513
DOI : 10.1016/j.tecto.2014.03.022

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Recently, a large amount of work has been devoted to the study of spectral clustering — a powerful unsupervised classification method. This paper brings contributions to both its foundations, and its applications to text classification. Departing from the mainstream, concerned with hard membership, we study the extension of spectral clustering to soft membership (probabilistic, EM style) assignments. One of its key features is to avoid the complexity gap of hard membership. We apply this theory to a challenging problem, text clustering for languages having permeable borders, via a novel construction of Markov chains from corpora. Experiments with a readily available code clearly display the potential of the method, which brings a visually appealing soft distinction of languages that may define altogether a whole corpus.
ISSN: 0031-3203

hal-00329991
https://hal.archives-ouvertes.fr/hal-00329991
DOI : 10.1016/j.patcog.2008.06.024

Éditeur(s) : HAL CCSD
Résumé : International audience
OBJECTIVE: To analyze complications of endoscopic transsphenoidal surgery (ETS) for nonfunctioning pituitary macroadenomas (NFPAs).ăMETHODS: A retrospective study of 300 NFPAs was performed. Complications and factors that could influence these complications were analyzed.ăRESULTS: Visual and pituitary functions worsened in 2.4% and 13.7% of cases, respectively. Postoperative diabetes insipidus was permanent in 6.2% of cases. Postoperative meningitis occurred in 3.3% of patients. Meningitis was strongly associated with intraoperative cerebrospinal fluid (CSF) leaks (P = 0.01), postoperative CSF leaks (P = 0.0001), and operation times longer than 1 hour (P = 0.023). Detection of Staphylococcus aureus and preoperative treatment with mupirocin in the nostrils did not impact the occurrence of meningitis. Two patients with meningitis died (unique causes of death). Postoperative CSF leaks occurred in 2.7% of cases and were associated with intraoperative CSF leaks (P = 0.007) and permanent diabetes insipidus (P = 0.028). The rate of CSF leak decreased from 4% to 0.8% (P = 0.048) after we moved from a soft to hard reconstruction of the sella. The rate of postoperative epistaxis decreased from 6.7% to 1.25% after we stopped using monopolar coagulation (P = 0.013).ăCONCLUSIONS: ETS permits a wide view, allowing good conditions for a satisfactory resection in the majority of NFPAs. Some pitfalls of endoscopy can lead to complications that improve with modification of the operative technique (i.e., CSF leak and postoperative epistaxis). This study confirms an acceptable rate of complications associated with ETS.
World Neurosurgery

hal-01474296
https://hal.archives-ouvertes.fr/hal-01474296
DOI : 10.1016/j.wneu.2016.02.059
PUBMED : 26902781

Éditeur(s) : ICES 2008 Annual Science Conference, 22-26 september 2008, HALIFAX, CANADA
Résumé : Since 2000, Ifremer has been implemented a Fisheries Information System (FIS), in strong collaboration with the DPMA (Direction of fisheries and aquaculture of the French Ministry of Agriculture and Fisheries). The FIS aims at building an operational and multidisciplinary monitoring network for scientific purposes, allowing a comprehensive view of fishery systems including their biological, technical, environmental and economical components. The objectives of the FIS are (i) to provide the specifications and methodologies for the collection, storage and processing of fisheries data, with the constant concern to harmonise all these procedures on a national scale, (ii) to improve data management system and access to data for a wide-spread public, and (iii) to produce and distribute relevant datasets, indicators and synthesis, for understanding and evaluation, including bio-economic diagnostics of the fisheries, and assessment of the short and long-term impacts of fisheries management scenario and measures. The FIS covers all the French fisheries, including overseas territories and small-scale fisheries, for which data are often hardly available or missing, whereas two thirds of the French vessels are less than 12 meters long. The challenge was to establish a statistical and an integrated approach supporting bio-ecological and economic issues. To further an integrated analysis of the fishery systems, the wide range kinds of data - including acoustic surveys, biological in-situ observations, environmental observations, as well as fishing statistics (landings and efforts) or economic data - are managed in a single data management system, based on an integrated relational data base with geographical facilities.

Droits : 2008 ICES
http://archimer.ifremer.fr/doc/00059/17002/14504.pdf
http://archimer.ifremer.fr/doc/00059/17002/

Éditeur(s) : Elsevier
Résumé : Marine fish larvae undergo major morphological and cellular changes during the first month of life. The ontogeny of the gastrointestinal tract combines these two aspects of the larval development and is very interesting in that the timing of functional changes appears genetically hard-wired. The goal of this paper is to give an overview of the gastrointestinal development process in marine fish larvae, with particular attention to three species: sea bass; red drum; and sole, since the description of gut maturation in fish larvae was initiated during the last decade with these species. During the early stages, marine fish larvae exhibit particular digestive features. Concerning the exocrine pancreas, amylase expression decreases with age from the third week post-hatching in sea bass and red drum (approximately 400 degree days), whereas expression of other enzymes (trypsin, lipase, phospholipase A2...) increases until the end of the larva period. Moreover, secretory function of the exocrine pancreas progressively develops and becomes efficient after the third week of life. Concerning the intestine, enzymes of the enterocyte cytosol (in particular peptidase) have higher activity in young larvae than in older. Approximately in the fourth week of post-hatching development in sea bass, red drum and sole larvae, the cytosolic activities dramatically decline concurrently with a sharp increase in membranous enzyme activities of the brush border, such as alkaline phosphatase, aminopeptidase N, maltase... This process characterises the normal maturation of enterocytes in developing fish larvae and also in other vertebrates' species. The establishment of an efficient brush border membrane digestion represents the adult mode of digestion of enterocytes. This paper also describes the role of diet on the development of the gastrointestinal tract. Indeed, the maturational process of digestive enzyme can be enhanced, stopped, or delayed depending on the composition of the diet.
Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology (1532-0456) (Elsevier), 2001-12 , Vol. 130 , N. 4 , P. 477-487

Droits : 2001 Elsevier Science Inc. All rights reserved
http://archimer.ifremer.fr/doc/2001/publication-650.pdf
DOI:10.1016/S1532-0456(01)00274-5
http://archimer.ifremer.fr/doc/00000/650/

Éditeur(s) : HAL CCSD
Résumé : Today, one of the main challenges in the oil industry is the exploitation of new resources in naturally fractured reservoirs often located in structurally complex areas such as plate boundaries, mountain ranges or near salt structures. While numerical models of rock deformation based on continuum mechanics are becoming industry standard in providing efficient means for modelling natural fractures in reservoirs, the knowledge of past perturbed stress fields, which is referred as the type (normal, wrench or reverse), orientation and magnitude of the regional or local tectonic stresses that needs to be applied as boundary condition in numerical simulations, is often unknown or approximated.The essence of this thesis is to improve the recovery of the paleostress field needed to constrain numerical simulations. I first described and discuss through a comprehensive mechanically-based multi-parametric study how far we can rely on the commonly used paleostress inversion methods based on fault slip data and the Wallace and Bott assumptions. I then compared this method with a new generation technique based on geomechanics using field observations. Since slip markers on faults are hardly observed in core or image log, I used observed natural fracture data as main drivers for the inversion of the paleostress using geomechanically-based method. I demonstrated, through various outcrop and subsurface examples, how this can efficiently be done. Finally, I aimed at addressing the problem of polyphase fracture data sets with unknown mechanical type (joints, faults, stylolites ...) and expanded the mechanical stress inversion to the separation of tectonic phases.
Aujourd'hui, l'un des principaux défis dans l'industrie pétrolière est l'exploitation de nouvelles ressources dans les réservoirs naturellement fracturés souvent situés dans des zones structurellement complexes tels que les frontières de plaques, les chaînes de montagnes ou les structures de proches des dômes de sel. Alors que les modèles numériques de déformation des roches basée sur la mécanique des milieux continus fournissant des moyens efficaces pour la modélisation de fractures naturelles dans les réservoirs, sont devenus la norme dans l'industrie, les paléo-contraintes régionales ou locales appliquées comme condition aux limites dans les simulations numériques, définies par le régime (normal, décrochant ou inverse), l'orientation, et la magnitude des contraintes tectoniques, sont souvent inconnues ou approximées.L'essence de cette thèse est d'améliorer la prédiction du champ de paléo-contrainte nécessaire pour contraindre les simulations numériques. J’ai décrit dans un premier temps à travers une étude comparative multi-paramétrique complète basée sur la mécanique, dans quelle mesure nous pouvions compter sur les méthodes d'inversion des paléo-contraintes basées sur les hypothèses de Wallace et Bott et les données de glissement sur les failles. J’ai ensuite comparé ces méthodes avec une technique d’inversion de nouvelle génération basée sur la géomécanique en utilisant les observations de terrain. Puisque les marqueurs de glissement sur les failles sont rarement observés le long du forage, j’ai utilisé l’inversion géomécanique des contraintes pour les données de fractures naturelles observées. J’ai alors démontré, l’efficacité de cette technique à travers divers exemples d'affleurements et de subsurface. Enfin, j’ai proposé une solution afin de résoudre le problème des données de fractures polyphasées à type cinématique inconnu (joints, failles, stylolites ...) et étendu l’inversion de contrainte basée sur la géomécanique à la séparation des phases tectoniques.
https://hal.archives-ouvertes.fr/tel-01324110

tel-01324110
https://hal.archives-ouvertes.fr/tel-01324110
https://hal.archives-ouvertes.fr/tel-01324110/document
https://hal.archives-ouvertes.fr/tel-01324110/file/theselejri.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Networks of localized conjugate compactive shear bands with large dihedral angles (corresponding to so-called shear-enhanced compaction bands) were generated in 3-layer plane strain finite-difference models. The central layer has elastic–plastic properties with a small positive internal friction coefficient, negative dilatancy factor, and the hardening modulus reducing during the deformation. The two other layers are elastic. The spatial organization of the networks in the central layer, resulting from the elastic–plastic instability of the 3-layer system, was shown to be dependent on the contrast of the elastic stiffness of the layers and on the friction between them. When the stiffness E of the elastic layers and/or the friction are small, the networks are rather symmetric (the bands of both orientation families are distributed homogeneously within the layer). An increase in E at high friction, results in the clustering of the bands of one orientation along a layer segment which is followed by another segment filled with the bands of the other orientation. Different network types are characterized by different band spacing which is smaller in the clustered networks. The intensity of inelastic deformation and hence of porosity reduction within the bands are also smaller in this case. The obtained band networks are very similar to those in nature where the same variability of the network organization is observed. Available geological and mechanical data confirm the conclusions from the modeling about the origin of this variability.
ISSN: 0040-1951

hal-01116201
https://hal.archives-ouvertes.fr/hal-01116201
DOI : 10.1016/j.tecto.2014.01.021

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Propagation energies for five examples of deformation bands in porous sandstones from four field sites in Nevada, Utah, and France were calculated by using the J-integral approach. Pure compaction bands that accommodate primarily closing displacements from the Valley of Fire (Nevada) site have a closing-mode band propagation energy of J I = 5.5 ± 1.6 kJ/m2. Shear-enhanced compaction bands having subequal amounts of normal (closing) and shear strains across them from the same site have propagation energies of J I = 6.11 ± 1.8 kJ/m2 and J II = 1.52 ± 0.5 kJ/m2 for closing and shearing modes respectively. Closing- and shearing-mode band propagation energies for shear-enhanced compaction bands from the Buckskin Gulch (Utah) site, 5.63 ± 1.7 and 1.91 ± 0.57 kJ/m2 and the Uchaux (France) site, 11.0 ± 3.3 and 2.35 ± 0.7 kJ/m2 respectively are comparable to the values for similar structures from the Valley of Fire site. Cataclastic deformation bands at the Orange (France) site accommodate significantly larger values of shear offset than do shear-enhanced compaction bands, with a ratio of shear to closing offset that exceeds 7. The calculated closing- and shearing-mode propagation energies for these shear bands, 17.8 ± 5.4 and 3.3 ± 1.0 kJ/m2 respectively are comparable to those for pure or shear-enhanced compaction bands deformed at approximately the same depth of burial. Strain softening of cataclastic compactional shear bands implies unstable shearing, whereas stable and perhaps strain-hardening shearing may be inferred for shear-enhanced compaction bands. Displacement-length scaling relations for shear-enhanced compaction bands of the form D∝L are consistent with the results and with suggestions of band thickening during growth obtained from bifurcation analyses and with field observations of shear zones in porous host rock.
ISSN: 0376-9429

hal-00750341
https://hal.archives-ouvertes.fr/hal-00750341
DOI : 10.1007/s10704-012-9730-2

Éditeur(s) : 8 th Workshop of World Mariculture Society, Costa Rica, 10-13 janvier 1977
Résumé : To develop shrimp fanning in French Polynesia where no indigenous commercial species of penaeid prawn exists, the first step is to select the right species according to the following criteria: maturation and spawning in captivity, mass production of post-larvae, fast growth at semi-intensive density, acceptability of artificial diet, disease resistance and hardiness. This paper presents the results on P. monodon, Fabricius, the largest Indo-Pacific species. Experiments have been conducted in the "Centre Océanologique du Pacifique" in Tahiti Island where the environmental conditions are water temperature range 25-29 C, salinity 35 ppt, pH 8.2. [NOT CONTROLLED OCR]

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1977/acte-4412.pdf
http://archimer.ifremer.fr/doc/00000/4412/

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : The environment is impacted by natural and anthropogenic disturbances that occur at different spatial and temporal scales, and that lead to major changes and even disequilibria when exceeding the resiliency capacities of the ecosystem. With an annual mean flow of 1700 m(3) s(-1), the Rhone River is the largest of the western Mediterranean basin. Its annual solid discharges vary between 2 and 20 Mt, with flood events responsible for more than 70% of these amounts. In the marine coastal area, close to the mouth, both flocculation and aggregation lead to the formation of fine-grained deposits, i.e. the prodelta. This area is characterized by sediment accumulation rates up to 20-50 cm yr(-1) and high accumulations of particle reactive contaminants such as various man-made radionuclides released into the river by nuclear facilities or arising form prior atmospheric nuclear tests (1954-1980) and the Chernobyl accident (April 1986). This prodelta, however, cannot be considered as a permanent repository for particle reactive pollutants since it is subjected to reworking processes. Sediment dynamics had to be linked to the influences of hydrodynamic and atmospheric events such as high flow rates or storms close to the Rhone River mouth. An experiment was carried out during the winter 2006 based on the deployment of two ADCPs and six altimeters at the Grand Rhone mouth for several months. This type of installation has never been used before in this area because of the hard meteorological conditions and the strong fishing activities. However, results showed pluricentimetric rises of the sedimentary level just after river flood events and decreases during storms, generated by southeast winds. Radiotracers and grain size depth profiles helped to characterise the studied events and to establish inventories of sediments and radionuclides. A cruise (CARMEX) was carried out during this same period to collect water samples, suspended particles and sediment cores. The results enabled us to link both river flow and wind characteristics to events recorded on the sea floor, i.e. resuspension, accumulation, consolidation, etc. Deposits of 11 cm of sediments were estimated during flood periods and bottom shear stresses up to 5 N m(-2) were calculated during sediment erosion phases. (C) 2010 Elsevier Ltd. All rights reserved.
Continental Shelf Research (0278-4343) (Pergamon-elsevier Science Ltd), 2010-05 , Vol. 30 , N. 9 , P. 1095-1107

Droits : 2010 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00006/11695/8479.pdf
DOI:10.1016/j.csr.2010.02.015
http://archimer.ifremer.fr/doc/00006/11695/

Éditeur(s) : Agrocampus-ouest
Résumé : Quantitative evaluations of management measure impact on resource and fleet viability are required to provide diagnostics and feed decision process. Fisheries are complex systems where numerous dynamics interact at various spatial and temporal scales. This complexity and the difficulty to observe marine systems are responsible for the high uncertainty surrounding fishery functioning that makes it hard to identify adequate management measures. The increasing consideration of uncertainties in diagnostics argues in favor of robust management measures rather than optimal management measures. Identifying robust management measures requires the development of models that account for complexity and uncertainty in the description and prediction of management impact as well as the identification of synthetic descriptors (indicators) of the state and dynamic of the system. The aim of this work is to propose generic methodologies for developing such tools. The methodological developments are applied to the pelagic fishery of the bay of Biscay. This fishery mainly focused on anchovy and was highly impacted by fishing ban on this species since 2005. Causes for anchovy drop in biomass either environmental or due to fishing are poorly understood, making management decision much harder in a critical environmental and economic context. The adequacy of traditional management using TAC is questioned and additional spatial management measures are proposed.
Des évaluations quantitatives de l’impact de mesures de gestion sur les ressources et la viabilité des flottilles sont nécessaires pour établir des diagnostics et pour fournir des éléments d’orientation pour la gestion des pêcheries. Les pêcheries sont des systèmes complexes mettant en œuvre de nombreuses dynamiques à des échelles de temps et d’espace très variables et interagissant très fortement entre elles. Cette complexité et la difficulté d’observer les systèmes marins, conduit à une grande incertitude sur leur fonctionnement qui rend difficile la détermination des mesures de gestion adaptées. La reconnaissance de ces incertitudes, plaide de plus en plus en faveur d’une gestion robuste plutôt qu’optimale. Déterminer la robustesse des mesures de gestion nécessite le développement de modèles de description et de prédiction capable d’intégrer la complexité et l’incertitude du système, ainsi que d’outils de description synthétiques (indicateurs) de l’état et de la dynamique de la pêcherie à partir d’observations. L’objectif de ce travail est de proposer des méthodes génériques pour le développement de tels outils. Ces développements méthodologiques sont appliqués à la pêcherie pélagique du golfe de Gascogne. Cette pêcherie ciblant principalement l’anchois a été fortement perturbée par la fermeture de la pêche à cette espèce en 2005. Le déterminisme environnemental et le rôle de la pêche dans le déclin de la population d’anchois sont mal compris ce qui rend difficile la prise de décision dans un contexte économique et écologique critique. La gestion traditionnelle par TAC pourrait s’avérer insuffisante pour permettre l’exploitation durable et des mesures spatialisées sont envisagées en complément.

Droits : 2010 The Author, UEB
http://archimer.ifremer.fr/doc/00025/13630/10712.pdf
http://archimer.ifremer.fr/doc/00025/13630/

Éditeur(s) : HAL CCSD springer
Résumé : International audience
In this paper, we address the problem of flood prediction in complex situations. We present an original solution in order to achieve the main goals of accuracy, flexibility and readability. We propose the SM2D modular data driven approach that provides predictive models for each sub-process of a global hydrological process. We show that this solution improves the predictive accuracy regarding a global approach. The originality of our proposition is threefold: (1) the predictive model is defined as a set of aggregate variables that act as classifiers, (2) an evolutionary technique is implemented to find best juries of such classifiers and (3) the flood process complexity problem is addressed by searching for sub-models on sub-processes identified partly by spatial criteria. The solution has proved to perform well on flash flood phenomena of tropical areas known to be hardly predictable. It was indeed successfully applied on a real caribbean river dataset after both preprocessing and preliminary analysis steps presented in the paper.
Lecture notes in computer science
Singapour, Singapore

hal-00878780
https://hal.archives-ouvertes.fr/hal-00878780
DOI : 10.1007/978-3-642-40897-7_13

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : The tropical coast of Queensland, Australia is experiencing rapid population and tourism growth. Heavy development pressure is being placed on the biophysical environment, which includes the largest sand island in the world (World Heritage listed), Fraser Island. Despite the existence of State planning legislation oriented towards environmental sustainability, it is apparent that little, if any, regard is being paid to the long-term effects of resort and canal-estate development on the underlying biophysical environment of the coast and islands. While the remarkable surface features of the tropical coastal environment such as the surf beaches, the unique dune lakes, and the coastal vegetation, as well as the prolific wildlife, are used as selling points for new settlement and above all tourism, little is known or apparently of major concern with respect to the long term environmental impact of coastal development. While the crowding effect of large numbers of visitors and their impact on the natural environment - through significant degradation, site hardening or lack of proper on-site management – has been identified as a particular problem in certain areas, there is little knowledge of impacts on the underlying coastal geomorphology. In particular, developmental choices are often made in ignorance of, or disregard of, the widespread existence of tropical acid sulfate soils in that coastal environment. Reactive soils such as these can, and do, greatly affect the biophysical outcomes of a development if they are exposed. This paper documents such impacts in the form of a case study of the acid sulfate soil problem in relation to the development of tourist resorts, and suggests that part of the solution is for the State Government to insist on enforceable standards relating to their development for tourism in the coastal zone. These would reduce the use by many resort owners of fancy golf course developments as an environmental cover up to make it look as if they put a lot of effort into protecting the environment….
La côte tropicale du Queensland est confrontée à un accroissement rapide de la population. Les fortes pressions anthropiques pèsent sur le milieu biophysique, qui comprend notamment a plus grande île de sable du monde, un site classé Patrimoine de l’Humanité, Port Hinchinbrook et Fraser Island. Malgré l’existence d’une législation nationale orientée vers la préservation de l’environnement, il est manifeste que peu d’attention est accordée aux effets à long terme des sites touristiques et du développement de l’urbanisation sur ces franges côtières sensibles. L’aspect massif des flux de visiteurs et leurs impacts sur le milieu naturel a été identifié comme un sujet d’inquiétude particulier dans certaines régions. La connaissance des impacts sur la géomorphologie côtière souterraine est très réduite et les choix de développement sont souvent faits dans l’ignorance ou au mépris de la présence répandue de terrains de sulfate d’acide dans ce milieu côtier. Des sols réactifs comme ceux-là peuvent affecter, et affectent, grandement les résultats géophysiques d’un développement lorsqu’ils sont connus. Des études de cas sur le problème des sols de sulfate d’acide suggèrent qu’une partie de la solution pour le gouvernement de l’Etat du Queensland est d’imposer des normes obligatoires pour le développement du tourisme dans la zone côtière.
Australie
Queensland

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.1272
http://journals.openedition.org/etudescaribeennes/1272

Éditeur(s) : Pêche thonière et dispositifs de concentration de poissons, Caribbean-Martinique, 15-19 Oct 1999
Résumé : The volcanic island of Mayotte (374 km super(2)) is part of the Comoros Archipelago, which is situated on the North of Mozambic's Canal (Indian Ocean). Mayotte is composed of two islands and some thirty small islands distributed in a lagoon of more than 1,000 km super(2). Being one of the French Republic's Territorial Collectivity, this island is characterized by a very fast demographic evolution (growth rate : 5.8 %), which constitutes the foundation of the development problematic. Most of local halieutic production comes from the reef (nearly 2,000 t in 1999), the technic of "palangrotte" (deep line) is still dominating. The fishing fleet is composed of monoxyl pirogues and polyester fishing boats for the 1,200 fishermen. The first FADs (Fish Aggregating Devices) were installed in 1989. Now, 5 FADs are situated in the lagoon whereas 10 others have been installed out of it. If it is very hard to evaluate economic impact of FAD in Mayotte, their success seems to be limited because of several local constraints : fear to fish out of the lagoon, little interest in tuna, lack of formation. Nevertheless, faced to the demographic evolution and the decrease of the reef ressources, a program of fishing development on FAD has been initiated in 1998, with those following themes : realization of a new prototype of FAD, experimental fishing program with vertical drift "long line", teaching programs for the local fishermen. Today, it is too early to analyze the informations already collected, but the results are very promising, and validate the technical improvement of the new prototype.Original Abstract: L'ile volcanique de Mayotte (374 km super(2)) fait partie de l'archipel des Comores situe au Nord du canal du Mozambique (ocean Indien). Mayotte comprend deux iles et une trentaine d'ilots repartis dans un lagon de plus de 1 000 km super(2). Collectivite territoriale de la Republique francaise, l'ile se caracterise par une evolution demographique tres rapide (taux de croissance: 5,8 %), qui constitue le socle de toutes les problematiques de developpement. L'essentiel de la production halieutique provient du milieu recifal (environ 2 000 t en 1999), la peche a la ligne de fond reste la technique dominante. La flottille de peche est constituee de pirogues monoxyles et de barques polyester pour une population de 1 200 pecheurs. Les premiers DCP mahorais furent installes en 1989. A ce jour, on denombre cinq DCP dans le lagon et dix hors lagon. Il semble que leur succes soit reste limite en raison de plusieurs contraintes locales : peur de la peche hors lagon, peu d'interet pour les poissons pelagiques, manque de formation. Neanmoins, face a l'explosion demographique et a l'appauvrissement des ressources lagonaires, un nouveau programme de developpement de la peche sur DCP a ete initie en 1998. Ce programme comporte trois axes : realisation d'un nouveau prototype de DCP, lancement d'un programme de peches experimentales a la palangre verticale derivante et formation des pecheurs. A ce jour, les informations obtenues sont trop parcellaires pour etre analysees mais les donnees et observations realisees sur les nouveaux dispositifs permettent de valider leur conception technique.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00042/15290/12647.pdf
http://archimer.ifremer.fr/doc/00042/15290/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The transcription factor nuclear factor-erythroid 2-related-2 (Nrf2) controls cellular redox homeostasis and displays immunomodulatory properties. Nrf2 alters cytokine expression in murine T cells, but its effects in human T lymphocytes are unknown. This study investigated the expression and activity of Nrf2 in human activated CD4(+) T helper lymphocytes (Th cells) that mediate the adaptive immune response. Th cells were isolated from peripheral blood mononuclear cells and activated with antibodies against CD3 and CD28, mimicking physiologic Th cell stimulation by dendritic cells. Nrf2 is hardly detectable in unstimulated Th cells. Activation of Th cells rapidly and strongly increases the levels of Nrf2 protein by increasing NRF2 gene transcription. Th cell activation also enhances mRNA and protein levels of Nrf2 target genes encoding antioxidant enzymes. Blocking Nrf2 expression using chemical inhibitors or siRNAs prevents these gene inductions. Pretreatment with inorganic arsenic, a Nrf2 inducer that does not alter NRF2 gene expression, increases protein level and transcriptional activity of Nrf2 induced by Th cell stimulation. Inorganic arsenic enhances nuclear translocation of Nrf2, its interaction with the coactivator protein p300, and its DNA binding activity. Inhibition of Nrf2 expression abrogates the effects of inorganic arsenic on mRNA levels of antioxidant genes, but does not alter the expression of IL-2, TNF-α, interferon-γ, or IL-17 in Th cells activated in the absence or presence of the metalloid. In conclusion, this study demonstrates for the first time that stimulation of human Th cells increases transcription of the NRF2 gene and activity of the Nrf2 protein. However, modulation of Nrf2 levels does not modify the secretion of inflammatory cytokines from these T lymphocytes.
ISSN: 0891-5849

hal-01018643
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01018643
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01018643/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01018643/file/Nrf2_expression_and_activity_in_human_T_lymphocytes_accepted.pdf
DOI : 10.1016/j.freeradbiomed.2014.03.006

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Ce numéro de la Revue Études Caribéennes s’intéresse aux liens qui unissent et opposent l’activité touristique et les ressources naturelles, particulièrement dans les pays du Sud. Dans un contexte de médiatisation accrue des enjeux liés à la biodiversité et aux menaces qui pèsent sur elle, le tourisme – et particulièrement l’écotourisme – est souvent présenté comme un moyen de concilier la conservation et le développement. Les autorités locales, malgré l’existence d’un cadre réglementaire propre à l’environnement, ne disposent souvent pas de moyens suffisants (humains, matériels et financiers) pour gérer la croissance de la fréquentation des aires protégées et ses effets potentiels sur l’environnement naturel et humain. En réponse à cette problématique, les institutions financières internationales et les organismes associés proposent aux pays du Sud de trouver un équilibre entre une fréquentation de masse et une fréquentation de bas volume afin de développer « un tourisme de haute qualité ». Même si cela était possible, quels critères peuvent être utilisés pour « cesser » le développement d’un pôle ou d’une région touristique ? L’évolution géographique « naturelle » du tourisme – c’est-à-dire essentiellement basée sur la mise en tourisme de la nature et sur l’accessibilité de ces ressources – pose déjà des problèmes politiques et économiques importants. Les gouvernements (central, régional ou local) sont difficilement en mesure de réaliser un arbitrage de long terme dans ce contexte qui permettrait l’adéquation entre le développement touristique et la préservation des espaces naturels. La relation entre le tourisme et les ressources naturelles s’articule souvent autour de deux objectifs spécifiques, soient : développer un produit à moindre impact, mais aux dépenses élevées et viser un volume de visiteurs qui contribue aux profits économiques, mais qui amène le moins de dégradation écologique/sociale possible. Cette position résume à elle seule à la fois la complexité et les multiples paradoxes dans lesquels s’insère la mise en tourisme de la nature. Les dynamiques sociales et l’extension de l’appropriation privative des espaces naturels et agricoles posent la problématique des modes de gestion des ressources communes et de leur pérennité, particulièrement dans les pays du Sud. Dans ce contexte, les objectifs, les ressources et les stratégies des principaux acteurs concernés sont difficilement conciliables et le système de relation qu’il induit n’est pas nécessairement en phase avec les finalités poursuivies. This edition of Revue Etudes Caribéennes focuses on the links that unite and oppose tourism and natural resources, specifically in southern countries. In a context of increased media coverage of issues related to biodiversity (including threats to it), tourism – particularly ecotourism – is often presented as a mean to reconcile conservation and development. Local authorities, despite the existence of a specific environmental regulatory framework, often have insufficient resources (human, material, financial) to manage the increase of visits to protected areas, and the potential impact of these visits on natural and human environments. In response to this problem, international financial institutions and associated organizations offer to try to find a balance between mass attendance and low volume attendance in order to develop "high quality tourism" in southern countries. Even if this were possible, what criteria can be used to "stop" the development of a tourist site or region for environmental reasons? The “natural” geographic evolution of tourism – in other words, essentially based on the development of nature tourism and accessibility of these resources – already causes huge political and economic problems. Governments (central, regional or local) are hardly able to arbitrate over the long term in a context that would allow finding a balance between tourism development and preservation of natural areas. The relationship between tourism and natural resources often revolves around two specific objectives: to develop a product with less impact, but at high cost and a target volume of visitors that contributes to economic profits, but that causes the least ecological / social degradation possible. This position epitomizes both the complexity and the many paradoxes of nature tourism development. Social interactions and the expansion of private appropriation of natural and agricultural areas highlight the challenges of managing common resources and their sustainability, especially in the southern countries. In this context, development objectives, natural resources and the strategies of key stakeholders are difficult to reconcile, and the relationship between leading actors do not always correspond with these objectives. Esta edición de “Revue Études Caribéennes” se interesa a los lazos que unen y separan la actividad turística y los recursos naturales, particularmente en los países del sur. En un contexto de mediatización en alza sobre los objetivos ligados a la biodiversidad y a las amenazas que pesan sobre ella, el turismo – y particularmente el ecoturismo – está a menudo presentado como un medio de conciliar la conservación y el desarrollo. Las autoridades locales, pese a la existencia de un cuadro propio de reglamentación al medio ambiente, no disponen habitualmente de suficientes medios (humanos, materiales y financieros) para controlar el aumento de visitas en las áreas protegidas y sus efectos potenciales sobre el ambiente natural y humano. En respuesta a esta problemática, las instituciones financieras internacionales y los organismos asociados proponen a los países del sur encontrar un equilibrio entre la frecuentación de masas y una frecuentación de bajo volumen con el objetivo de desarrollar “un turismo de alta calidad”. Incluso si fuese posible, ¿qué criterios podrían ser utilizados para “cesar” el desarrollo de un centro o una región turística? La evolución geográfica “natural” del turismo – esencialmente basada en el desarrollo del turismo de la naturaleza y el acceso de sus recursos – crean problemas políticos y económicos enormes. Los gobiernos (central, regional o local) tienen dificultades para realizar un arbitraje a largo plazo en este contexto que permitiría la adecuación entre el desarrollo turístico y la preservación de los espacios naturales. La relación entre el turismo y los recursos naturales se articula a menudo alrededor de dos objetivos específicos, sean: desarrollar un producto con mínimo impacto, pero con gastos elevados y aspirar a un volumen de visitantes que contribuya a las ganancias económicas, pero que traiga la menor degradación ecológica/social posible. Esta posición resume la complejidad y las múltiples paradojas en las cuales se encaja la puesta del turismo en la naturaleza. Las dinámicas sociales y la extensión de la apropiación privativa de los espacios naturales y agrícolas plantean una problemática en los modos de gestión de los recursos comunes y de su perennidad, particularmente en los países del sur. En este contexto, los objetivos, los recursos y las estrategias de los principales actores concernidos son difícilmente conciliables y el sistema de relación que induce no es necesariamente en la misma fase con los objetivos perseguidos.

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.7884
http://journals.openedition.org/etudescaribeennes/7884

Résumé : L’objet de cette thèse est l’étude des comportements mécanique et à la corrosion d’un nouveau système de fondation, dit pieux SPIRMEC, adapté aux structures légères. Le travail s’est focalisé sur deux grands aspects. Le premier aspect concerne l’analyse du comportement sous chargement axiale des pieux SPIRMEC sur la base de l’expérimentation et de la modélisation numérique dans un sol mou non cohésif. Quant au deuxième aspect, il traite du problème de la corrosion de l’acier constituant le pieu dans un environnement tropical humide. Le comportement des pieux SPIRMEC sous une charge axiale de traction, dans un sol fin non cohésif, a montré le développement d’une surface cylindrique de rupture. Celle-ci ne dépend pas de la configuration géométrique des pieux tel que : l’espacement S, le diamètre d’hélice Dh et le diamètre du tube d. En adoptant ce critère de rupture et à l’aide d’une analyse statistique des données, nous avons proposé quatre méthodes analytiques de prédiction de la capacité portante des pieux SPIRMEC à partir des essais in-situ et au laboratoire qui sont: •Méthode CPT basée sur la résistance de pointe pénétromètrique (essai CPT), •Méthode MPT basée sur la pression limite pressiomètrique (essai MPT), •Méthode du couple d’installation, •Méthode analytique basée sur les paramètres de cisaillement de sol notamment l’angle de frottement interne (essais triaxial et boîte de cisaillement). Ces méthodes tiennent compte de la géométrie du pieu, du procédé de mise en oeuvre et de la compacité du sol. L’analyse de performance des méthodes proposées a montré que les méthodes analytique et CPT représentent mieux le comportement des pieux testés. La modélisation numérique du comportement des pieux SPIRMEC sous charge axiale de traction a été également étudiée à l’aide du code de calcul Plaxis 2D. Un modèle axisymétrique a été adopté pour modéliser la géométrie de la structure. Le modèle de comportement hardening soil a été retenu pour modéliser le comportement élastoplastiq des couches de sol. Un modèle élastique linéaire a été retenu pour le pieu. Quant au comportement de l’interface sol-structure, il a été pris en compte par un modèle élastoplastique basé sur les critères de Mohr-Coulomb. L’expansion du sol résultant de l’installation des pieux a été approchée par une cavité cylindrique. Cette dernière a été modélisée par des déformations volumiques anisotropes. Nous avons constaté, qu’appliquer une déformation volumique de l’ordre de 40% permet une bonne concordance entre les résultats numériques et expérimentaux. L’étude paramétrique nous a également permis de constater l’existence d’une variation linéaire entre la capacité portante et l’espacement S. Le comportement de l’acier galvanisé dans le sol a été également étudié au moyen de trois approches: électrochimique, visuelles grâce au microscope électronique et gravimétrique. Les tests électrochimiques de corrosion du zinc ont été réalisés dans la solution de sol artificielle pour deux périodes bien distinctes : saison des pluies et après 8 mois de contact sol-pieu. Une forte dépendance est constatée de la vitesse de corrosion de zinc au pH et à la conductivité de la solution. La vitesse de corrosion est plus importante en saison des pluies qu’après 8 mois de contact de pieu avec le sol. Les fortes concentrations en sulfates semblent augmenter la vitesse de corrosion. Les analyses menées au MEB montrent que la zone de fluctuation de nappe et en surface externe (sol/air) sont les zones les plus corrodées. La comparaison entre les différentes techniques d’évaluation de la vitesse de corrosion a montré que l’eau de nappe peut être utilisée comme un milieu représentatif du profil chimique d’un sol non cohésif et légèrement granulaire.
The purpose of this thesis is to study the both behaviors mechanical and of the corrosion of a new foundation system, called spirec piles, for lightweight structures. The work was based on two main aspects. The first aspect concerns the analysis of behavior of the spirmec piles under axial loading on the basis of experimental and numerical modeling in a non-cohesive soft soil. On the second aspect, it addresses the problem of corrosion of steel forming the pile in a humid tropical environment. The behavior of the tested piles under axial traction load, in a non-cohesive soil, showed the development of a cylindrical surface of failure. This does not depend on the geometrical configuration of the tested piles such that: the spacing s, the helix diameter dh and the diameter of the shaft. By adopting this failure criterion and using statistical data analysis, we proposed four analytical methods for predicting the bearing capacity of the piles from in-situ and laboratory tests, which are: cpt method based on tip resistance penetrometer (cpt test), mpt method based on pressuremeter limit pressure (test mpt), method of installation torque and analytical method based on the shear parameters of soil (triaxial tests and shear box). These methods take into account the geometry of the pile, the method and implementation of soil compaction. Performance analysis of the proposed methods showed that the analytical methods and cpt represent better the behavior of piles tested. An axisymmetric condition was assumed to model this geometry in two-dimensional space. In this study, we proposed to model the pipe screw pile with plates elements available in plaxis 2d. The helixes were modeled as circular disks. Interface elements were incorporated along the pile to simulate the soil-pile interaction. Hardening soil model was chosen to describe the soil with drained behavior was assigned for all layers. Linear elastic for pile and elastic plastic model based on the mohr-coulomb criterion was used to describe the interface behavior. The lateral expansion generated by the pile shaft was modeled by anisotropic volumetric strains (ɛxx=ɛzz, ɛyy=0). The pile behavior under tensile loading at different volumetric strains, it is clear that the best fit was obtained at volumetric strain of 40%. The parametric study also allowed us to establish the existence of a linear variation between the bearing capacity and spacings. The behavior of the galvanized steel in the ground has also been studied using three approaches such as: electrochemical, microscopic imaging and gravimetrically. Electrochemical tests of the corrosion of the zinc have been made in artificial soil solution into two periods, the rainy season and after eight months of contact soil-pile. Is a strong dependence of the observed corrosion rate of the zinc at the ph and conductivity of the solution. The corrosion rate is higher in the rainy season compared to eight months of contact of the pile with soil. High sulfate concentrations increase the rate of corrosion. The meb analysis shows that the fluctuation zone of the water table is the most corroded area. Comparison between the different methods of evaluating the corrosion rate showed that the ground water may be used as a representative profile of the chemical environment of a non-cohesive soil and slightly granular.

http://www.theses.fr/2014AGUY0790/document

Éditeur(s) : HAL CCSD Society for Sedimentary Geology
Résumé : International audience
Spectacular accumulations of abundant bryozoan nodules (bryoliths) occur in the early Pleistocene coarse-grained, mixed carbonate-siliciclastic deposits of the Cape Arkhangelos Calcarenite of Rhodes, Greece. These bryoliths are always associated with numerous bivalves (mostly ostreids and pectinids) and serpulid worms, together with other rarer skeletal organisms. The spheroidal bryoliths vary in diameter from I cm to 16 cm, and those with a more ellipsoidal shape range from 0.8 cm to 22 cm in length and from 0.7 cm to 16 cm in width; an elongated bryolith of exceptional size (40 cm) was even found. The bryoliths are composed almost exclusively of the anascan cheilostome Calpensia nobilis and are nucleated on gravels, pebbles, or bivalve shells. After settlement of bryozoan crusts, the bryoliths increased in size by repeated overturning of these mobile hard substrates by longshore currents. The bryoliths developed at depths of 20-40 m on a flat shoal between emerged areas where bottom currents episodically accelerated during storms. The currents also transported the bryoliths, together with other skeletal elements, into deeper settings (40-80 m) where they could continue their growth, upward or downward, or be colonized by other organisms.
ISSN: 0883-0351

hal-00475576
https://hal.archives-ouvertes.fr/hal-00475576
DOI : 10.2110/palo.2009.p09-024r

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
Measurements of branch xylem density, D_x, were made for 1466 trees representing 503 species, sampled from 80 sites across the Amazon basin. Measured values ranged from 240 kg m^?3 for a Brosimum parinarioides from Tapajos in West Pará, Brazil to 1130 kg m^?3 for an Aiouea sp. from Caxiuana, Central Pará, Brazil. Analysis of variance showed significant differences in average D_x across the sample plots as well as significant differences between families, genera and species. A partitioning of the total variance in the dataset showed that geographic location and plot accounted for 33% of the variation with species identity accounting for an additional 27%; the remaining "residual" 40% of the variance accounted for by tree to tree (within species) variation. Variations in plot means, were, however, hardly accountable at all by differences in species composition. Rather, it would seem that variations of xylem density at plot level must be explained by the effects of soils and/or climate. This conclusion is supported by the observation that the xylem density of the more widely distributed species varied systematically from plot to plot. Thus, as well as having a genetic component branch xylem density is a plastic trait that, for any given species, varies according to where the tree is growing and in a predictable manner. Exceptions to this general rule may be some pioneers belonging to Pourouma and Miconia and some species within the genera Brosimum, Rinorea and Trichillia which seem to be more constrained in terms of this plasticity than most species sampled as part of this study.
ISSN: 1810-6277

hal-00298004
https://hal.archives-ouvertes.fr/hal-00298004
https://hal.archives-ouvertes.fr/hal-00298004/document
https://hal.archives-ouvertes.fr/hal-00298004/file/bgd-5-2003-2008.pdf