Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : The Oman ophiolite consists of several massifs cropping out along a 500 km long band trending NW-SE along the coast of Oman; it is one of the best exposed sections of oceanic crust and mantle in the world. There is a gradient in igneous processes and composition in the ophiolite, with the northern massifs recording a polygenetic igneous history involving an increasingly important subduction component, whereas the southern massifs were formed primarily via a mid-ocean ridge basalt (MORB)-like, single-stage process at a submarine spreading ridge. In this study we use geochemical data from Wadi Tayin, which is one of the southern massifs of the Oman ophiolite, to constrain the composition and genesis of oceanic crust and upper mantle. The Wadi Tayin harzburgites are residues of partial melting that are as depleted as the most depleted mid-ocean ridge peridotites. They have low middle- to heavy rare earth element ratios, most probably reflecting melting close to and beyond the exhaustion of clinopyroxene. Like many abyssal peridotites, the Wadi Tayin samples show enrichment in highly incompatible elements, giving rise to U-shaped MORB-normalized trace element patterns. We favor the idea that this is caused by enrichment of highly incompatible elements along grain boundaries in peridotite, which may be the result of near-equilibrium partitioning between grain boundaries and grain interiors, rather than disequilibrium processes. Equilibrium partitioning between crystals and grain boundaries during melting and melt extraction is also our preferred explanation for ubiquitous high Pb contents relative to Ce and La in our samples as well as in most abyssal peridotites. The Wadi Tayin samples record substantial variability in terms of osmium isotopic composition and platinum group element (PGE) concentrations. The more radiogenic nature of the dunites and impregnated peridotites compared with the residual harzburgites may be due to relatively high Os-187/Os-188 in melt transported through the dunites. The presence of residual peridotites with whole-rock osmium isotopic compositions less radiogenic than MORB may be explained by melting of a veined (upwelling) mantle forming mixed melts in which much of the Os derives from veins with high Re/Os in a matrix of previously depleted peridotite. An important result of this study is that the shallowest samples are refertilized (i.e. anomalously enriched in incompatible elements), and record relatively high metamorphic closure temperatures. These observations suggest that migrating melt underwent crystallization during rapid cooling in the uppermost mantle during and immediately after ridge magmatism. A variety of geothermometers all yield the result that the stratigraphically highest harzburgites equilibrated at higher temperature than the deeper ones. The systematic decrease in closure temperature with increasing depth below the Moho transition zone probably reflects systematic variation in cooling rate as a function of depth in the mantle section. We hypothesize that the refertilization and higher closure temperatures recorded by the uppermost mantle samples are linked. More rapid cooling led to higher closure temperatures, and to partial crystallization of migrating melts in the shallowest part of the mantle section, yielding slightly elevated abundances of elements such as Ca and Na, and incompatible trace elements.
ISSN: 0022-3530

hal-00456056
https://hal.archives-ouvertes.fr/hal-00456056
DOI : 10.1093/petrology/egp077

Éditeur(s) : HAL CCSD
Résumé : International audience
The effect of alkaloids extracted from Isertia coccinea plant (AEIC) on the corrosion of C38 steel in 1 M hydrochloric acid was investigated by electrochemical impedance spectroscopy (EIS) and potentiodynamic polarization techniques. Potentiodynamic polarization curves indicated that the extract behave as mixed-type inhibitor. The experimental data obtained from EIS method show a frequency distribution and therefore a modelling element with frequency dispersion behaviour, a constant phase element (CPE) has been used. The inhibition efficiencies of the extract calculated by three methods show the same tendency. Inhibition was found to increase with increasing concentration of the plant extract. The results obtained show that the extract solution of the plant could serve as an effective inhibitor for the corrosion of C38 steel in hydrochloric acid solution. The apparent activation energy of the process taking place in inhibitor presence was determined on the ground of four temperature values in the range from 25 °C to 55 °C using the data obtained by two independent methods. Theoretical fitting of different isotherms, Langmuir, Temkin and Frunkin, were tested to clarify the nature of adsorption.
International journal of electrochemical science

hal-01097030
https://hal-agroparistech.archives-ouvertes.fr/hal-01097030

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
An increasing number of field examples in mountain belts show that the formation of passive margins during extreme continent thinning may occur under conditions of high to very high thermal gradient beneath a thin cover of syn-rift sediments. Orogenic belts resulting from the tectonic inversion of distal margins and regions of exhumed continental mantle may exhibit high-temperature, low-pressure (HT-LP) metamorphism and coeval syn-extensional, ductile deformation. Recent studies have shown that the northern flank of the Pyrenean belt, especially the North Pyrenean Zone, is one of the best examples of such inverted hot, passive margin. In this study, we provide a map of HT-LP metamorphism based on a data set of more than 100 peak-temperature estimates obtained using Raman spectroscopy of the carbona-ceous material (RSCM). This data set is completed by previous PT (pressure and temperature) estimates based on mineral assemblages, and new 40 Ar– 39 Ar (amphibole, micas) and U–Pb (titanite) ages from metamorphic and magmatic rocks of the North Pyrenean Zone. The implications on the geological evolution of the Cretaceous Pyrenean paleomar-gins are discussed. Ages range mainly from 110 to 90 Ma, and no westward or eastward propagation of the metamor-phism and magmatism can be clearly identified. In contrast, the new data reveal a progressive propagation of the thermal anomaly from the base to the surface of the continental crust. Focusing on the key localities of the Mauléon basin, Arguenos–Moncaup, Lherz, Boucheville and the Bas-Agly, we analyze the thermal conditions prevailing during the Cre-taceous crustal thinning. The results are synthetized into a series of three regional thematic maps and into two detailed maps of the Arguenos–Moncaup and Lherz areas. The results indicate a first-order control of the thermal gradient by the intensity of crustal thinning. The highest grades of metamor-phism are intimately associated with the areas where subcon-tinental mantle rocks have been unroofed or exhumed.
ISSN: 1869-9510

insu-01161826
https://hal-insu.archives-ouvertes.fr/insu-01161826
https://hal-insu.archives-ouvertes.fr/insu-01161826/document
https://hal-insu.archives-ouvertes.fr/insu-01161826/file/PL03457.pdf
DOI : 10.5194/se-6-643-2015

Éditeur(s) : HAL CCSD Society for Sedimentary Geology
Résumé : International audience
Spectacular accumulations of abundant bryozoan nodules (bryoliths) occur in the early Pleistocene coarse-grained, mixed carbonate-siliciclastic deposits of the Cape Arkhangelos Calcarenite of Rhodes, Greece. These bryoliths are always associated with numerous bivalves (mostly ostreids and pectinids) and serpulid worms, together with other rarer skeletal organisms. The spheroidal bryoliths vary in diameter from I cm to 16 cm, and those with a more ellipsoidal shape range from 0.8 cm to 22 cm in length and from 0.7 cm to 16 cm in width; an elongated bryolith of exceptional size (40 cm) was even found. The bryoliths are composed almost exclusively of the anascan cheilostome Calpensia nobilis and are nucleated on gravels, pebbles, or bivalve shells. After settlement of bryozoan crusts, the bryoliths increased in size by repeated overturning of these mobile hard substrates by longshore currents. The bryoliths developed at depths of 20-40 m on a flat shoal between emerged areas where bottom currents episodically accelerated during storms. The currents also transported the bryoliths, together with other skeletal elements, into deeper settings (40-80 m) where they could continue their growth, upward or downward, or be colonized by other organisms.
ISSN: 0883-0351

hal-00475576
https://hal.archives-ouvertes.fr/hal-00475576
DOI : 10.2110/palo.2009.p09-024r

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The identification of a large OIB-type volcanic sequence on top of an obducted nappe in the Lesser Caucaus of Armenia helps us explain the obduction processes in the Caucasus region that are related to dramatic change in the global tectonics of the Tethyan region in the late Lower Cretaceous. The ophiolitic nappe preserves three distinct magmatic series, obducted in a single tectonic slice over the South Armenian Block during the Coniacian-Santonian (88-83 Ma), the same time as the Oman ophiolite. Similar geological, petrological, geochemical and age features for various Armenian ophiolitic massifs (Sevan, Stepanavan, and Vedi) argue for the presence of a single large obducted ophiolite unit. The ophiolite, shows evidence for a slow-spreading oceanic environment in Lower to Middle Jurassic. Serpentinites, gabbros and plagiogranites were exhumed by normal faults, and covered by radiolarites. Few pillow-lava flows have infilled the rift grabens. The ophiolite lavas have hybrid geochemical composition intermediate between Arc and MORB signatures: (La/Yb)(N) = 0.6-0.9: (Nb/Th)(N) = 0.17-0.57; (Nd-143/Nd-144)(i) = 0.51273-0.51291; (Sr-87/Sr-86)(i) = 0.70370-0.70565; (Pb-207/Pb-204)(i) = 15.4587-15.5411; (Pb-208/Pb-204)(i) = 37.4053-38.2336; (Pb-206/Pb-204)(i) = 17.9195-18.4594. These compositions suggest they were probably formed in a back-arc basin by melting of a shallow asthenosphere source contaminated by a deeper mantle source modified by subducted slab-derived products. Sr-87/Sr-86 ratios and petrological evidence show that these lavas have been intensely altered by mid-oceanic hydrothermalism as well as by serpentinites, which are interpreted as exhumed mantle peridotites. The gabbros have almost the same geochemical composition as related pillow-lavas: (La/Yb)(N) = 0.2-2.3; (Nb/Th)(N) = 0.1-2.8; (Nd-143/Nd-144)(i) = 0.51264-0.51276: (Sr-87/Sr-86)(i) = 0.70386-0.70557; (Pb-207/Pb-204)(i) = 15.4888-15.5391; (Pb-208/Pb-204)(i) = 37.2729-37.8713; (Pb-206/Pb-204)(i) = 17.6296-17.9683. Plagiogranites show major and trace element features similar to other Neo-Tethyan plagiogranites (La/Yb)(N) = 1.10-7.92; (Nb/Th)(N) = 0.10-0.94; but display a less radiogenic Nd isotopic composition than basalts [(Nd-143/Nd-144)(i) = 0.51263] and more radiogenic (Sr-87/Sr-86)(i) ratios. This oceanic crust sequence is covered by variable thicknesses of unaltered pillowed OIB alkaline lavas emplaced in marine conditions. Ar-40/Ar-39 dating of a single-grain amphibole phenocryst provides a Lower Cretaceous age of 117.3 +/- 0.9 Ma, which confirms a distinct formation age of the OIB lavas. The geochemical composition of these alkaline lavas is similar to plateau-lavas [(La/Yb)(N) = 6-14; (Nb/Th)(N) = 0.23-0.76; (Nd-143/Nd-144)(i) = 0.51262-0.51271; (Sr-87/Sr-86)(i) = 0.70338-0.70551; (Pb-207/Pb-204)(i) = 15.5439-15.6158; (Pb-208/Pb-204)(i) = 38.3724-39.3623; (Pb-206/Pb-204)(i) = 18.4024-19.6744].;They have significantly more radiogenic lead isotopic compositions than phiolitic rocks, and fit the geochemical compositions of hot-spot derived lavas mixed with various proportions of oceanic mantle. In addition, this oceanic + plateau sequence is covered by Upper Cretaceous calc-alkaline lavas: (La/Yb)(N) = 2.07-2.31; (Nb/Th)(N) = 0.08-0.15; (Nd-144/Nd-143)(i) = 0.51271-0.51282; (Sr-117/Sr-116)(i) = 0.70452-0.70478), which were likely formed in a supra-subduction zone environment. During the late Lower to early Upper Cretaceous period, hot-spot related magmatism related to plateau events may have led to significant crustal thickening in various zones of the Middle-eastern Neotethys. These processes have likely hindered subduction of some of the hot and thickened oceanic crust segments, and allowed them to be obducted over small continental blocks such as the South Armenian Block.
ISSN: 0024-4937

hal-00443855
https://hal.archives-ouvertes.fr/hal-00443855
DOI : 10.1016/j.lithos.2009.02.006

Éditeur(s) : Actes de colloques. Ifremer. Brest [ACTES COLLOQ. IFREMER.]. 1991
Résumé : On the bathyal slope for continental margins, steep and rocky substrates punctuated with cliffs and collapsing zones are frequently found. As survey and sampling with the classical technics from the sea surface is practically impossible in such an environment, in situ exploration with a submersible allows significant advances in ecology, with implications in paleoenvironment reconstruction. Mixing of material from shallow-water and deep-sea origins into bathyal sedimentation suggests that the so-called "fossil assemblages of outer platform" were frequently misinterpreted. Dense populations of animals closely related to fossil groups which were only considered as relict of the Past ("living fossils") and previously interpreted as shallow-water inhabitants during geological times can be discovered living in such bathyal communities. The role of bathyal ecological niches during global bioevents brings a new vision of the history of life in the Ocean through geological time and has to be further investigated. Examples from cruises monitoring the diving saucer Cyana (SP 3000) in the Bay of Biscay and off New Caledonia are given.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1990/acte-1138.pdf
http://archimer.ifremer.fr/doc/00000/1138/

Éditeur(s) : HAL CCSD Elsevier
Résumé :  
Tree species-rich tropical rainforests are characterized by a highly variable quality of leaf litter input to the soil at small spatial scales. This diverse plant litter is a major source of energy and nutrients for soil microorganisms, particularly in rainforests developed on old and nutrient-impoverished soils. Here we tested the hypothesis that the variability in leaf litter quality produced by a highly diverse tree community determines the spatial variability of the microbial respiration process in the underlying soil. We analyzed a total of 225 litter-soil pairs from an undisturbed Amazonian rainforest in French Guiana using a hierarchical sampling design. The microbial respiration process was assessed using substrateinduced respiration (SIR) and compared to a wide range of quality parameters of the associated litter layer (litter nutrients, carbon forms, stoichiometry, litter mass and pH). The results show that the variability of both litter quality and SIR rates was more important at large than at small scales. SIR rates varied between 1.1 and 4.0 mg g_1 h_1 and were significantly correlated with litter layer quality (up to 50% of the variability explained by the best mixed linear model). Total litter P content was the individual most important factor explaining the observed spatial variation in soil SIR, with higher rates associated to high litter P. SIR rates also correlated positively with total litter N content and with increasing proportions of labile C compounds. However, contrary to our expectation, SIR rates were not related to litter stoichiometry. These data suggest that in the studied Amazonian rainforest, tree canopy composition is an important driver of the microbial respiration process via leaf litter fall, resulting in potentially strong plant-soil feedbacks. .
ISSN: 0038-0717

hal-01032139
https://hal.archives-ouvertes.fr/hal-01032139
DOI : 10.1016/j.soilbio.2011.01.018

Éditeur(s) : HAL CCSD De Gruyter
Résumé : International audience
A comparative study of 9H-pyrido[3,4-b]indole (norharmane) and 1-methyl-9H-pyrido[3,4-b]indole (harmane) as inhibitors for C38 steel corrosion in 1 M HCl solution at 25 °C was carried out. Potentiodynamic polarization and electrochemical impedance spectroscopy (EIS) techniques were applied to study the metal corrosion behavior in the absence and presence of different concentrations of these inhibitors. The OCP as a function of time were also established. Cathodic and anodic polarization curves show that norharmane and harmane are a mixed-type inhibitors. Adsorption of indole derivatives on the C38 steel surface, in 1 M HCl solution, follows the Langmuir adsorption isotherm model. The ΔGads values were calculated and discussed. The potential of zero charge (PZC) of the C38 steel in inhibited solution was studied by the EIS method, and a mechanism for the adsorption process was proposed. Raman spectroscopy confirmed that indole molecules strongly adsorbed onto the steel surface. The electronic properties of indole derivates, obtained using the AM1 semi-empirical quantum chemical approach, were correlated with their experimental efficiencies using the linear resistance model (LR).
ISSN: 0018-3830

hal-01093227
https://hal-agroparistech.archives-ouvertes.fr/hal-01093227
DOI : 10.1515/HF.2010.034

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
We develop and implement a new method to take into account the impact of waves into the 3-D circulation model SYMPHONIE (Marsaleix et al., 2008, 2009a), following the simplified equations of Bennis et al. (2011) which use glm2z-RANS theory (Ardhuin et al., 2008b). These adiabatic equations are completed by additional parameterizations of wave breaking, bottom friction and wave-enhanced vertical mixing, making the forcing valid from the surf zone through to the open ocean. The wave forcing is performed by wave generation and propagation models WAVEWATCH III® (Tolman, 2008, 2009; Ardhuin et al., 2010) and SWAN (Booij et al., 1999). The model is tested and compared with other models for a plane beach test case, previously tested by Haas and Warner (2009) and Uchiyama et al. (2010). A comparison is also made with the laboratory measurements of Haller et al. (2002) of a barred beach with channels. Results fit with previous simulations performed by other models and with available observational data. Finally, a realistic case of energetic waves travelling over a coast of the Gulf of Lion (in the northwest of the Mediterranean Sea) for which currents are available at different depths as well as an accurate bathymetric database of the 0-10 m depth range, is then simulated. A grid nesting approach is used to account for the different forcings acting at different spatial scales. The simulation coupling the effects of waves and currents is successful to reproduce the powerful northward littoral drift in the 0-15 m depth zone. More precisely, two distinct cases are identified: when waves have a normal angle of incidence with the coast, they are responsible for complex circulation cells and rip currents in the surf zone, and when they travel obliquely, they generate a northward littoral drift. These features are more complicated than in the test cases, due to the complex bathymetry and the consideration of wind and non-stationary processes. Wave impacts in the inner shelf are less visible since wind and regional circulation seem to be the predominant forcings. Besides, a discrepancy between model and observations is noted at that scale, possibly linked to an underestimation of the wind stress. Lastly, this three-dimensional method allows a good representation of vertical current profiles and permits to calculate the shear stress associated with wave and current. Future work will focus on the combination with a sediment transport model.
ISSN: 1812-0806

hal-00766548
https://hal.archives-ouvertes.fr/hal-00766548
https://hal.archives-ouvertes.fr/hal-00766548/document
https://hal.archives-ouvertes.fr/hal-00766548/file/os-8-657-2012.pdf
DOI : 10.5194/osd-8-2417-2011

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Mantle cell lymphoma (MCL) is a hematologic neoplasm characterised by the t(11;14)(q13;q32) translocation leading to aberrant cyclin D1 expression. The cell functions of cyclin D1 depend on its partners and/or subcellular distribution, resulting in different oncogenic properties. We observed the accumulation of cyclin D1 in the cytoplasm of a subset of MCL cell lines and primary cells. In primary cells, this cytoplasmic distribution was correlated with a more frequent blastoid phenotype. We performed immunoprecipitation assays and mass spectrometry on enriched cytosolic fractions from two cell lines. The cyclin D1 interactome was found to include several factors involved in adhesion, migration and invasion. We found that the accumulation of cyclin D1 in the cytoplasm was associated with higher levels of migration and invasiveness. We also showed that MCL cells with high cytoplasmic levels of cyclin D1 engrafted more rapidly into the bone marrow, spleen, and brain in immunodeficient mice. Both migration and invasion processes, both in vivo and in vitro, were counteracted by the exportin 1 inhibitor KPT-330, which retains cyclin D1 in the nucleus. Our data reveal a role of cytoplasmic cyclin D1 in the control of MCL cell migration and invasion, and as a true operator of MCL pathogenesis.
ISSN: 2045-2322

hal-01635754
https://hal.archives-ouvertes.fr/hal-01635754
DOI : 10.1038/s41598-017-14222-1
PUBMED : 29066743

Éditeur(s) : HAL CCSD
Résumé :  
Improvement of wood quality related traits is currently hampered by costly chemical and technological assays and the necessity to wait until the trees are nearly mature to evaluate wood properties. The availability of a vast quantity of genomic data opens now a new avenue to identify early selection criteria based on molecular information and therefore increase selection efficiency. Association mapping is becoming a method of choice to identify QTN (quantitative trait nucleotide) that contribute to complex trait variation. The implementation of this approach requires on the one hand knowledge of the molecular mechanisms underlying trait variation and polymorphism within candidate genes, and on the other hand the availability of phenotypically well characterized genetic material. We are developing this strategy in the frame of the French maritime pine breeding program, an economically important forest tree species in the South Western Europe. About 500 trees from the breeding population were evaluated for wood physical and chemical properties through the analysis of 2,800 half-sib progenies and 1,500 clones in 8 field tests. These same trees are being genotyped at 185 SNPs obtained from the sequencing of 41 candidate genes, and an additional set of 200 eSNPs detected in 147 EST-contigs (to be used as control). Statistical association between the breeding values of the 500 trees and their respective genotypes will be tested using mixed models accounting for relatedness among individuals of the breeding population.
IUFRO-CTIA joint conference, "Adaptation, Breeding and Conservation in the Era of Forest Tree Genomics and Environmental Change"
Québec City, Canada

hal-01032075
https://hal.archives-ouvertes.fr/hal-01032075

Éditeur(s) : HAL CCSD
Résumé : International audience
In the paper the following mixed equilibrium problem in a Hilbert space is considered: find x 2 C such that F(x, x)+hG(x), x−xi 0, 8x 2 C, where C is a nonempty convex closed subset of a real Hilbert space. For its solution a version of the proximal approach is studied. The general proximal method always includes a quadratic term of the kind |x−xn|2, which provides a process of transition from a point xn to a point xn+1. The authors replace this quadratic term by its linearization. Thus, they obtain a method of the kind F(xn+1, x)+hG(xn)+ −1(h 0(xn+1)−h 0(xk)), x−xn+1i 0, 8x 2 C, where h0 is the derivative of a given function on C. It is proved that if the function F(x, y) is monotone and convex in y for any x, F(x, x) = 0, and the operator G(x) is co-coercive, then the method weakly converges in a real Hilbert space to an equilibrium solution. Note that this result will also be true if the co-coercive condition is replaced by a monotonicity property. The Tikhonov regularization method (in the absence of disturbances and calculating auxiliary solutions approximately) is justified and its weak convergence in a Hilbert space is proved. It is known that the proximal method can always be interpreted as an implicit discret approximation of some differential equation or inclusion. Therefore the authors consider a differential inclusion for the extreme mapping. Permitting "-approximation for the function F(x, y) by means of a parametric family F(x, y, ") and assuming the strong monotonicity of the operator @F(x, y, ") (it is a very strong condition), the authors prove the convergence of the trajectory of the differential inclusion to an equilibrium solution.
Ill-posed variational problems and regularization techniques

hal-00773204
https://hal.univ-antilles.fr/hal-00773204

Éditeur(s) : Canadian Science Publishing, Nrc Research Press
Résumé : We develop a spatially and seasonally explicit bioeconomic model with three fleet dynamics processes built in endogenously. The model has been applied to the large French trawlers harvesting a medium-depth demersal stock, North Sea saithe (i.e., pollock, Pollachius virens), and a mix of deepwater species over a 10-year period (1999-2008), and the predictions have been contrasted with observations. The best overall fit was achieved where effort allocation was determined to be 80% by traditions and 20% by economic opportunism and where harvest efficiency increased by 8% a year. With this fleet dynamics parameterization, annual trends in fishing effort and profit were well reproduced by the model over the whole time period. Time series of the observed fishing effort by metier were generally well fitted by the model over the period 1999-2003, but less so over 2004-2008. The model also reasonably reproduced the catches by species over most of the time series, except for black scabbardfish (Aphanopus carbo).
Nous développons un modèle bio-économique spatial et saisonnier dans lequel trois processus caractérisant la dynamique des flottilles sont décrits de manière explicite. Ce modèle a été appliqué aux grands chalutiers français exploitant le lieu noir de mer du Nord (Pollachius virens) et une variété d'espèces profondes au cours d'une période de 10 ans (1999–2008), et les prévisions ont été contrastées avec les observations. Le meilleur ajustement est obtenu lorsque l'allocation de l'effort de pêche est déterminée a` hauteur de 80% par les traditions et 20% par l'opportunisme économique, et lorsque l'augmentation de l'efficacité de pêche est d'environ 8% par an. En paramétrant ainsi le module de dynamique des flottilles, les tendances annuelles de l'effort de pêche et du profit sont bien reproduites par le modèle sur l'ensemble de la période. Les variations temporelles de l'effort de pêche par métier sont généralement bien prises en compte sur la période 1999–2003, mais non sur la période 2004–2008. Le modèle ajuste les captures raisonnablement sur la plus grande partie de la période d'étude, pour toutes les espèces sauf le sabre noir (Aphanopus carbo).
Canadian Journal Of Fisheries And Aquatic Sciences (0706-652X) (Canadian Science Publishing, Nrc Research Press), 2013-07 , Vol. 70 , N. 7 , P. 992-1010

Droits : 2013 NRC Research Press
http://archimer.ifremer.fr/doc/00151/26227/24329.pdf
DOI:10.1139/cjfas-2012-0326
http://archimer.ifremer.fr/doc/00151/26227/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
The brown algal genus Padina (Dictyotales, Phaeophyceae) is distributed worldwide in tropical and temperate seas. Global species diversity and distribution ranges, however, remain largely unknown. Species-level diversity was reassessed using DNA-based, algorithmic species delineation techniques based on cox3 and rbcL sequence data from 221 specimens collected worldwide. This resulted in estimates ranging from 39 to 61 putative species (ESUs), depending on the technique as well as the locus. We discuss the merits, potential pitfalls, and evolutionary and biogeographic significance of algorithmic species delineation. We unveil patterns whereby ESUs are in all but one case restricted to either the Atlantic or Indo-Pacific Ocean. Within ocean basins we find evidence for the vast majority of ESUs to be confined to a single marine realm. Exceptions, whereby ESUs span up to three realms, are located in the Indo-Pacific Ocean. Patterns of range-restricted species likely arise by repeated founder events and subsequent peripatric speciation, hypothesized to dominate speciation mechanisms for coastal marine organisms in the Indo-Pacific. Using a three-gene (cox3, psaA and rbcL), relaxed molecular clock phylogenetic analysis we estimated divergence times, providing a historical framework to interpret biogeographic patterns.
ISSN: 0022-3646

hal-01545323
https://hal.archives-ouvertes.fr/hal-01545323
DOI : 10.1111/jpy.12027

Éditeur(s) : HAL CCSD Elsevier
Résumé : The correct characterization of the effective reactive transport dynamics is an important issue for modeling reactive transport on the Darcy scale, specifically in situations in which reactions are localized, that is when different reactions occur in different portions of the porous medium. Under such conditions the conventional approach of homogenizing only the porous medium chemistry is not appropriate. We consider here reactive transport in a porous medium that is characterized by mass transfer between a mobile and a distribution of immobile regions. Chemical and physical heterogeneities are reflected by distributions of kinetic reaction rate constants and residence times in the immobile zones. We derive an effective reactive transport equation for the mobile solute that is characterized by non-local physical mass transfer and reaction terms. Specifically, chemical heterogeneity is upscaled in terms of a reactive memory function that integrates both chemical and physical heterogeneity. Mass transfer limitations due to physical heterogeneity yield effective kinetic rate coefficients that can be much smaller than the volumetric average of the local scale coefficients. These results help to explain and quantify the often reported discrepancy between observed field reaction rate constants and the ones obtained under well mixed laboratory conditions. Furthermore, these results indicate that transport under physical and chemical heterogeneity cannot be upscaled separately.
ISSN: 0169-7722

hal-00617674
https://hal.archives-ouvertes.fr/hal-00617674
DOI : 10.1016/j.jconhyd.2010.06.002

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Tectonic mixing of slab- and mantle-derived materials at the interface between converging plates highly enhances fluid-mediated mass transfer from the slab to the overlying mantle. Subduction mélanges can provide information about the interaction among different slices accreted at plate interface domains, with implications on the tectonic and geochemical evolution of the plate-interface itself. At Cima di Gagnone, pelitic schists and gneiss enclose chlorite harzburgite and garnet peridotite lenses, like in subduction mélanges located in-between downgoing slabs and overlying mantle. These peridotites host MORB-type eclogite and metarodingite, and derive from dehydration of serpentinized mantle protoliths. Their enrichment in fluid-mobile B, As, Sb, U, Th is the result of an early-stage oceanic serpentinization, followed by interaction with host metasediments during subduction burial. Here we define the element exchange process in the Gagnone mélange by means of the B, Sr and Pb isotope analysis of its main lithologies (ultramafic, mafic rocks and paragneiss). The 87Sr/86Sr and 206Pb/204Pb ratios of ultramafic rocks (0.7090–0.7124 and 18.292–18.837, respectively) show enrichments in radiogenic Sr and Pb after exchange with the host paraschist (up to 0.7287 87Sr/86Sr; 18.751 206Pb/204Pb). The δ11B values of peridotites (down to −10‰) point to a combined effect of (1) 11B release to deserpentinization fluids (serpentinized protoliths likely had positive δ11B and lower radiogenic Sr, Pb), and of (2) exchange with fluids from the surrounding metasediments. The whole Gagnone rock-suite is finally overprinted by retrograde fluids that essentially bring to an increase in radiogenic Pb (about 19.0 206Pb/204Pb) and to values of 0.710 87Sr/86Sr and of −10‰ δ11B. The recognition of different stages of interaction between mantle rocks and sedimentary/crustal reservoirs allows us to define the geochemical effects related to the early coupling of such rocks along the plate-interface. Our study shows that ultramafic rocks involved in subduction-zone metamorphism and serpentinization uptake radiogenic Pb and Sr released by associated sedimentary reservoirs. The exchange process envisioned here is not only representative of subduction mélanges: it can also be a proxy of mass transfer between slab and serpentinized supra-subduction mantle, as occurs in forearcs. Dehydration of the Gagnone-type serpentinized mantle releases crust-derived components to arcs, without direct involvement of metasediment dehydration and/or melting in subarc environments. The retention of appreciable amounts of fluid-mobile elements, radiogenic Pb and Sr in dehydrated Gagnone peridotites has implications on element recycling in the deep Earth’s mantle.
ISSN: 0016-7037

hal-01174137
https://hal.archives-ouvertes.fr/hal-01174137
DOI : 10.1016/j.gca.2015.04.024

Éditeur(s) : HAL CCSD American Institute of Physics
Résumé : International audience
Laser-induced periodic surface structures (LIPSS) were formed on Cu/Si or Cu/glass thin films using Nd:YAG laser beam (40 ps, 10Hz, and 30mJ/cm2). The study of ablation threshold is always achieved over melting when the variation of the number of pulses increases from 1 to 1000. But the incubation effect is leading to reduce the threshold of melting as increasing the number of laser pulse. Also, real time reflectivity signals exhibit typical behavior to stress the formation of a liquid phase during the laser-processing regime and helps to determine the threshold of soft ablation.Atomic Force Microscopy (AFM) analyses have shown the topology of the micro-crater containing regular spikes with different height. Transmission Electron Microscopy (TEM) allows finally to show three distinguished zones in the close region of isolated protrusions. The central zone is a typical crystallized area of few nanometers surrounded by a mixed poly-crystalline and amorphous area. Finally, in the region far from the protrusion zone, Cu film shows an amorphous structure. The real time reflectivity, AFM, and HR-TEM analyses evidence the formation of a liquid phaseduring the LIPSS formation in the picosecond regime. VC 2015 AIP Publishing LLC
ISSN: 0003-6951

hal-01226065
https://hal.archives-ouvertes.fr/hal-01226065
DOI : 10.1063/1.4935413

Éditeur(s) : HAL CCSD Elsevier
Résumé : Nominally anhydrous minerals (NAMs) of Earth's mantle can contain hydrogen as atomic impurity in their crystal structures. This hydrogen substantially modifies many physical properties of Earth's mantle rocks. Also, the Earth's deep interior is made of rocks where minerals are separated by nanometer-scale interfaces call grain boundaries and interphase boundaries. These grain boundaries should carefully be considered as a potential hydrogen reservoir as well. I report here an experimental investigation of hydrogen diffusion through grain boundaries in olivine polycrystalline aggregates. Hot-press and diffusion experiments were performed using a gas-medium high-pressure vessel at a confining pressure of 300 MPa, over a temperature range of 1000-1200 degrees C. The diffusion assembly consisted of a dense polycrystalline cylinder of natural olivine from San Carlos (Arizona) mixed with olivine singles crystals of millimeter size. This mixture was couple with a talc cylinder. Ni capsule were used to buffer the oxygen fugacity at Ni-NiO level. Experiment durations varied from 3 min to 4 h. The presence of hydrogen in the sample was quantified using Fourier transform infrared spectroscopy. The calculation of the diffusion coefficients was based on the estimation of the length of polycrystalline solid affected by the diffusion of hydrogen. The absence or presence of hydrogen was recorded by the large olivines behaving here as "hydrogen sensor", which are implanted in the aggregate. The results indicate that effective hydrogen diffusivity which includes grain boundaries effect in olivine aggregate is barely one order of magnitude faster than hydrogen diffusion in an olivine single crystal with a diffusivity similar to 8.5x 10(-10) m(2) s(-1) 1000 degrees C and only twice faster similar to 2.1 x10(-9) m(2) s(-1) 1200 degrees C. Calculations of the diffusion data in relation to the Arrhenius Law, yield an activation energy of similar to 70 +/- 10 kJ mol(-l) . From these effective diffusivities and combined with published diffusion data for olivine single crystals, hydrogen diffusion in grain boundaries is extracted and yield diffusivities almost three order of magnitude faster (similar to 5 x 10(-6) m(2) s(-1) at 1200 degrees C) than in an olivine single crystal at the equivalent high temperature. On geological scales and for coarse-grain rocks, hydrogen diffusivity in grain boundaries is not fast enough to compete with lattice diffusion. The relative large grain size of mantle rocks will ensure a very limited hydrogen transport by effective diffusion, and a good conservation of water-rich zones in the Earth's mantle.
ISSN: 0012-821X

hal-00512821
https://hal.archives-ouvertes.fr/hal-00512821
DOI : 10.1016/j.epsl.2010.04.019

Éditeur(s) : HAL CCSD Wiley
Résumé : Negative density dependence (NDD) and environmental filtering (EF) shape community assembly, but their relative importance is poorly understood. Recent studies have shown that seedlings mortality risk is positively related to the phylogenetic relatedness of neighbours. However, natural enemies, whose depredations often cause NDD, respond to functional traits of hosts rather than phylogenetic relatedness per se. To understand the roles of NDD and EF in community assembly, we assessed the effects on seedling mortality of functional similarity, phylogenetic relatedness and stem density of neighbouring seedlings and adults in a species-rich tropical forest. Mortality risks increased for common species when their functional traits departed substantially from the neighbourhood mean, and for all species when surrounded by close relatives. This indicates that NDD affects community assembly more broadly than does EF, and leads to the tentative conclusion that natural enemies respond to phylogenetically correlated traits. Our results affirm the prominence of NDD in structuring species-rich communities.
ISSN: 1461-023X

hal-01032429
https://hal.archives-ouvertes.fr/hal-01032429
DOI : 10.1111/j.1461-0248.2011.01705.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : Field isolates of Toxoplasma gondii in Europe and North America have been grouped into three clonal lineages that display different virulence in mice. Whether the genetic structure of the parasite is related to clinical expression in humans has not yet been demonstrated. We developed an enzyme-linked immunosorbent assay which uses lineage-specific, polymorphic polypeptides derived from the dense granule antigens, GRA5 and GRA6. Our goal was to compare serotypical patterns observed in asymptomatic versus symptomatic (ocular disease and severe infection in human immunodeficiency virus (HIV)-positive patients) infections among patients from Europe and South America. Independent of the clinical presentation of the disease, serotypes differed according to geographical origin, with a homogeneous distribution of serotype II in Europe and of serotypes I and III in South America. We conclude that GRA5-GRA6 serotyping is an interesting tool to study serotype prevalence in populations but it is not an accurate marker of pathogenicity of Toxoplasma infection in humans.
ISSN: 1286-4579

hal-00306841
https://hal.archives-ouvertes.fr/hal-00306841
DOI : 10.1016/j.micinf.2008.04.001
PUBMED : 18539501