Éditeur(s) : HAL CCSD
Résumé : The functioning of ecosystems is based on the functional diversity, which is the complementto the species diversity. In the tropical rain forest, the saplings grow in the dense and stratifiedunderstorey. This thesis deals with the diversity of realisation of the support function by thesaplings in this context. The hypotheses are that the race through higher and so brighter levelsconstrains the mechanical security of the saplings with necessary biomass saving and need ofreorientation (gravitropism) and acclimation (mecanoperception and response) processes andthat diversity is thus structured by the species light-demand and affinity for the risk. Using awide sample of 16 species, at the Paracou station, relevant functional traits - risk of not-selfsupportingand gravitropic performance - are defined through adapted modellings whichcombine trunk shape, biomass distribution and wood properties. The traits values varybetween species and also with ontogeny and saplings environment. These variations are dueto elementary traits (shape, biomass, wood) with strong geometrical effects. The less selfsupportingspecies (low mechanical security) have the highest gravitropic performances andare also the most light-demanders. A species, Tachigali melinonii, distinguishes itself bystrong slendernesses and a frequent not-self-supporting habit letting suppose a strongadaptability to its mechanical environment. An experiment (growth response to staking),however, did not provide the expected results whereas the species with lower risks, Dicoryniaguianensis, reacted more.
Le fonctionnement des écosystèmes repose sur la diversité fonctionnelle, complément de ladiversité spécifique. En forêt tropicale humide, les jeunes arbres croissent en sous-bois denseet stratifié. Cette thèse porte sur la diversité de réalisation de la fonction biomécanique desoutien. Les hypothèses sont que la "course" vers les strates plus éclairées contraint lasécurité mécanique des jeunes arbres, avec de nécessaires économies de matière et recours àdes processus de réparation (gravitropisme) et d'acclimatation (mécanoperception et réponse),et que la diversité est donc structurée par le besoin en lumière et l'affinité pour le risque desespèces. Avec un échantillon de 16 espèces sur le dispositif de Paracou, des traits fonctionnelspertinents - risque de non-autoportance et performance gravitropique - sont définis au traversde modélisations adaptées qui combinent forme des troncs, répartition des masses etpropriétés du bois. Ces traits varient entre espèces mais aussi avec le développement etl'environnement des arbres. Ces variations sont dues aux variations des traits élémentaires(forme, masses, bois) avec de forts effets géométriques. Les espèces les moins autoportantes(faible sécurité) ont les plus fortes performances gravitropiques. Ce sont aussi les plusdemandeuses de lumière. Une espèce Tachigali melinonii se distingue par de fortsélancements et une fréquente non-autoportance laissant supposer une adaptabilité forte àl'environnement mécanique. Une expérimentation (réponse de croissance au tuteurage) n'acependant pas abouti aux résultats supposés puisque c'est au contraire l'espèce à faible risque,Dicorynia guianensis, qui s'est montrée plus réactive.
https://tel.archives-ouvertes.fr/tel-00272100

tel-00272100
https://tel.archives-ouvertes.fr/tel-00272100
https://tel.archives-ouvertes.fr/tel-00272100/document
https://tel.archives-ouvertes.fr/tel-00272100/file/TheseJaouen.pdf

Éditeur(s) : HAL CCSD
Résumé :  
The anatomy of tension wood and opposite wood was compared in 21 tropical rain forest trees from 21 species belonging to 18 families from French Guyana. Wood secimens were taken from the upper and lower sides of naturally titled trees. Measurement of the growth stress level ensured that the two samples were taken from wood tissues in a different mechanical state: highly tensile-stressed wood on the upper side, called tension wood and normally tensile-stressed wood on the lower side, called opposite wood. Quantitative parameters relating to fibres and vessels were measured on transverse sections of both tension and opposite wood to check if certain criteria can easily discriminate the two kinds of wood. We observed a decrease in the frequency of vessels in the tension wood in all the trees studied. Other criteria concerning shape and surface area of the vessels, fibre diameter or cell wall thickness did not reveal any general trend.At the ultrastructural level, we observed that the microfibril angle in the tension wood sample was lower than in opposite wood in all the trees except one (Licania membranacea).
IAWA Journal

hal-01032149
https://hal.archives-ouvertes.fr/hal-01032149

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé :  
We present a plant trait database covering autecology for rain forest trees of French Guiana. The database comprises more than thirty traits including autecology (e.g., habitat associations and reproductive phenology), wood structure (e.g., density and tension characteristics) and physiology at the whole plant (e.g., carbon and nitrogen isotopes) and leaf level (e.g., specific leaf area, photosynthetic capacity). The current database describes traits for about nine hundred species from three hundred genera in one hundred families. For more than sixty species, data on twelve morphological and ecophysiological traits are provided for individual plants under different environmental conditions and at different ontogenetic stages. The database is thus unique in permitting intraspecific analyses, such as the effects of ontogenetic stages or environmental conditions on trait values and their relationships.
Annals of Forest Science

hal-01032196
https://hal.archives-ouvertes.fr/hal-01032196
DOI : 10.1051/forest:2007058

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : The suitability of the natural 15N abundance and of total N concentration of leaves as indicators of the type of plant N nutrition in a rain forest of French Guiana were tested. Leaf samples from primary legume species, non-legumes (pioneer species) and from the non-N2-fixing species Dicorynia guianensis were analyzed. Both '15N and total leaf N varied widely (m1 r '15N (‰) r 7 and 1 r leaf N(%) r 3.2) suggesting possible distinctions between diazotrophic and non-fixing plants. The '15N also revealed two statistically distinct groups of non-N2-fixing species ('15N = 5.14 - 0.3 vs '15Nv=v1.65 - 0.17) related to the different ecological behaviors of these species in the successional processes. We conclude that the '15N signature of plant leaves combined with their total N concentration may be relevant indicators for identifying functional groups within the community of non-N2-fixing species, as well as for detecting diazotrophy. Despite the variability in the '15N of the non-N2-fixing species, N2-fixing groups can still be identified, provided that plants are simultaneously classified taxonomically, by their leaf '15N and total N concentration and by the presence or absence of nodules. The variability in the '15N of the non-fixing species is discussed.
ISSN: 0029-8549

hal-01031454
https://hal.archives-ouvertes.fr/hal-01031454
DOI : 10.1007/s004420050846

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
While the populations of large herbivores are being depleted in many tropical rainforests, the importance of their trophic role in the ecological functioning and biodiversity of these ecosystems is still not well evaluated. This is due to the outstanding plant diversity that they feed upon and the inherent difficulties involved in observing their elusive behaviour. Classically, the diet of elusive tropical herbivores is studied through the observation of browsing signs and macroscopic analysis of faeces or stomach contents. In this study, we illustrate that the original coupling of classic methods with genetic and ethnobotanical approaches yields information both about the diet diversity, the foraging modalities and the potential impact on vegetation of the largest terrestrial mammal of Amazonia, the lowland tapir. The study was conducted in the Guianan shield, where the ecology of tapirs has been less investigated. We identified 92 new species, 51 new genera and 13 new families of plants eaten by tapirs. We discuss the relative contribution of our different approaches, notably the contribution of genetic barcoding, used for the first time to investigate the diet of a large tropical mammal, and how local traditional ecological knowledge is accredited and valuable for research on the ecology of elusive animals.
ISSN: 1932-6203

halsde-00676374
https://hal.archives-ouvertes.fr/halsde-00676374
DOI : 10.1371/journal.pone.0025850
PUBMED : 21991372

Éditeur(s) : HAL CCSD Wiley
Résumé : Negative density dependence (NDD) and environmental filtering (EF) shape community assembly, but their relative importance is poorly understood. Recent studies have shown that seedlings mortality risk is positively related to the phylogenetic relatedness of neighbours. However, natural enemies, whose depredations often cause NDD, respond to functional traits of hosts rather than phylogenetic relatedness per se. To understand the roles of NDD and EF in community assembly, we assessed the effects on seedling mortality of functional similarity, phylogenetic relatedness and stem density of neighbouring seedlings and adults in a species-rich tropical forest. Mortality risks increased for common species when their functional traits departed substantially from the neighbourhood mean, and for all species when surrounded by close relatives. This indicates that NDD affects community assembly more broadly than does EF, and leads to the tentative conclusion that natural enemies respond to phylogenetically correlated traits. Our results affirm the prominence of NDD in structuring species-rich communities.
ISSN: 1461-023X

hal-01032429
https://hal.archives-ouvertes.fr/hal-01032429
DOI : 10.1111/j.1461-0248.2011.01705.x

Éditeur(s) : HAL CCSD Ecole nationale du génie rural
Résumé :  
Le Groupement d'Intérêt scientifique (GIS) Silvolab-Guyane coordonne, depuis 1992, les actions de recherche ou de développement sur la forêt tropicale en Guyane, à partir d'orientations scientifiques cadrées et sur financements publics. Les programmes sont exécutés par les chercheurs des organismes membres du GIS, éventuellement en partenariat avec des laboratoires métropolitains ou des instituts étrangers. L'objectif est d'enrichir les connaissances sur la description, la dynamique et l'évolution des écosystèmes pour mieux protéger, gérer ou valoriser la forêt en tant que ressource naturelle. Outre la réalisation conjointe de projets ciblés sur une problématique particulière, la mise en commun d'équipements transversaux tels les laboratoires, l'herbier de Cayenne, le centre de documentation de Kourou, mais aussi et surtout les stations de terrain et les dispositifs expérimentaux, sont des atouts majeurs du GIS.
ISSN: 0035-2829

hal-01032106
https://hal.archives-ouvertes.fr/hal-01032106

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Questions: Several studies have described aggregated spatial patterns in tropical tree species. This study investigates aggregate dynamics of Vouacapoua americana (Aublet), a climax species whose spatial pattern is not simply related to light and soil conditions or to its short seed dispersal range. Location: Two rain forest sites: Nouragues and Paracou, in the Guiana Shield. Methods: We described the spatial pattern of tree locations and spatial autocorrelation of tree diameters, using statistics derived from Ripley's K. We particularly used methods to define analysis subplots according to local density or local mean diameter. We investigated relationships between spatial distributions of adults and saplings. Results: At both sites, populations of Vouacapoua demonstrated several nested levels of aggregation. Tree diameters were spatially autocorrelated, revealing the existence of clusters with similar diameters. In the largest aggregates, tree diameters declined from the centre to the edge. Regeneration was aggregated and occurred mainly at cluster edges and around rare isolated trees, and sapling densities and basal area of adults were negatively correlated. We show that long-distance dispersal events are rare. Conclusions: Environmental factors and seed dispersal only explain part of the observed spatial patterns. We provide two main hypotheses about Vouacapoua population dynamics. First, the lack of regeneration in aggregate centres results in the ageing of existing aggregates. We suggest that this lack of recruitment close to mature trees is due to a Janzen-Connell effect. However, aggregates can continue to grow along colonization fronts. Second, long-distance dispersal events allow the formation of new clusters and play a crucial role in the colonization process. We investigate aggregate dynamics of Vouacapoua americana (Aublet) whose spatial pattern is not simply related to environmental conditions or to its seed dispersal. Regeneration does not occur in centers of aggregate of adults. We suggest that rare long-distance dispersal events and density-dependence predation of seeds and seedlings play a crucial role in formation of new clusters and structuration of larger aggregates.
ISSN: 1100-9233

hal-01502642
https://hal-agroparistech.archives-ouvertes.fr/hal-01502642
DOI : 10.1111/jvs.12080

Éditeur(s) : HAL CCSD
Résumé :   Diffusion du document : INRA Antilles-Guyane, UMR ECOFOG, F97387 Kourou, Guyane (France) Diplôme : Master Recherche
il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : DISSERTATION
Worldwide, there is concern regarding the declining quality of ecosystems, their rehabilitation, and their protection. In particular, the recognition that soil is a finite resource has spurred efforts to manage and restore it. In French Guiana, gold mining is a serious social and ecological problem, including the threats it poses to soil quality. The principal goal of this study was to establish a qualitative baseline of impacts of gold mining on soil microbial activity at five previously mined sites. We measured the potential rates of respiration and denitrification in disturbed soils, and compared theses rates with those of soils from adjacent forests, which served as un-disturbed references. Microbial activity, used as a bio-indicator, demonstrated the importance of soil rehabilitation, and the type of soil rehabilitation. We also found that visual observations of plant regeneration were insufficient to infer the rate of microbial activity. These bio-indicators can indicate soil quality, and help to formulate hypotheses about its developmnent. Bio-indicators can be used to obtain reliable indications about the quality of soil and contribute to decision-making in the management and restoration of this valuable resource.
Notre étude s'inscrit dans un contexte mondial de préoccupations environnementales, centrées notamment sur l'évaluation de la qualité des écosystèmes, la mise en place de leur réhabilitation et de leur sauvegarde. En particulier, la prise de conscience que le sol ne constitue pas une ressource inépuisable s'est accompagnée de la nécessité de gérer, voire de restaurer cette ressource. L'étude s'intègre également dans un contexte guyanais où l'exploitation aurifère constitue un problème écologique et sociétal majeur. Notre travail a pour but principal de dresser un bilan qualitatif des impacts de l'exploitation aurifère sur le fonctionnement microbien des sols de cinq sites miniers. Pour cela, nous avons effectué les mesures des activités potentielles de deux fonctions microbiennes, la respiration et la dénitrification, sur les sols des sites perturbés. Nous avons comparé ces valeurs d'activités microbiennes avec celles obtenues pour les sols de forêts naturelles (adjacentes à ces sites) que nous avons considérées comme la référence à atteindre (témoin). Les fonctions microbiennes, utilisées comme bio-indicateurs, ont mis en évidence l'importance de la réhabilitation et du type de réhabilitation sur la reprise du fonctionnement du sol. Nous avons constaté que l'observation de visu de la végétation ne suffit pas à évaluer de façon certaine la reprise de ce fonctionnement. Ces bio-indicateurs sont aptes à traduire l'état d'un sol perturbé et émettre des hypothèses quant à son évolution. Ainsi, les bio-indicateurs peuvent être utilisés afin d'obtenir des indications solides sur la qualité des sols et aider à la prise de décision en matière de gestion et de restauration de cette ressource.
https://hal.archives-ouvertes.fr/hal-01189544

hal-01189544
https://hal.archives-ouvertes.fr/hal-01189544
PRODINRA : 46710

Éditeur(s) : HAL CCSD
Résumé : Wood samples were taken from the upper and lower sides of 21 naturally tilted trees from 18 families of angiosperms in the tropical rainforest in French Guyana. The measurement of growth stresses ensured that the two samples were taken from wood tissues in a different mechanical state: highly tensile stressed wood on the upper side, called tension wood and lower tensile stressed wood on the lower side, called opposite wood. Eight species had tension wood fibres with a distinct gelatinous layer (G-layer). The distribution of gelatinous fibres varied from species to species. One of the species, Casearia javitensis (Flacourtiaceae), showed a peculiar multilayered secondary wall in its reaction wood. Comparison between the stress level and the occurrence of the G-layer indicates that the G-layer is not a key factor in the production of high tensile stressed wood.
IAWA Journal

hal-00112579
https://hal.archives-ouvertes.fr/hal-00112579
https://hal.archives-ouvertes.fr/hal-00112579/document
https://hal.archives-ouvertes.fr/hal-00112579/file/IAWA2006_ClairRuelleBeauchenePrevostFournier_ccsd.pdf
IRD : PAR00001136

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé :  
1. Despite considerable interest in the application of plant functional traits to questions of community assembly and ecosystem structure and function, there is no consensus on the appropriateness of sampling designs to obtain plot-level estimates in diverse plant communities. 2. We measured 10 plant functional traits describing leaf and stem morphology and ecophysiology for all trees in nine 1-ha plots in terra firme lowland tropical rain forests of French Guiana (N = 4709). 3.We calculated, by simulation, the mean and variance in trait values for each plot and each trait expected under seven sampling methods and a range of sampling intensities. Simulated sampling methods included a variety of spatial designs, as well as the application of existing data base values to all individuals of a given species. 4. For each trait in each plot, we defined a performance index for each sampling design as the proportion of resampling events that resulted in observed means within 5% of the true plot mean, and observed variance within 20%of the true plot variance. 5. The relative performance of sampling designs was consistent for estimations of means and variances. Data base use had consistently poor performance for most traits across all plots, whereas sampling one individual per species per plot resulted in relatively high performance. We found few differences among different spatial sampling strategies; however, for a given strategy, increased intensity of sampling resulted in markedly improved accuracy in estimates of trait mean and variance. 6. We also calculated the financial cost of each sampling design based on data from our 'every individual per plot' strategy and estimated the sampling and botanical effort required. The relative performance of designs was strongly positively correlated with relative financial cost, suggesting that sampling investment returns are relatively constant. 7. Our results suggest that trait sampling for many objectives in species-rich plant communities may require the considerable effort of sampling at least one individual of each species in each plot, and that investment in complete sampling, though great, may be worthwhile for at least some traits.
Functional Ecology

hal-01032175
https://hal.archives-ouvertes.fr/hal-01032175
DOI : 10.1111/j.1365-2435.2009.01600.x

Éditeur(s) : HAL CCSD Ecole nationale du génie rural
Résumé :  
A l'échelle de l'arbre, la fertilité chimique des sols semble expliquer la localisation majoritairement superficielle du système racinaire, alors que le type de drainage explique la forte variabilité de sa répartition verticale. Les racines profondes, malgré leur faible proportion, jouent un rôle important pour extraire l'eau en saison sèche. A l'échelle du peuplement, les variations latérales du sol influent sur des processus tels que la compétition inter-individuelle et la sylvigénèse. Pour les sols de terre ferme, plus les conditions édaphiques sont contraignantes, plus les gros arbres sont rares dans le peuplement forestier. Celui-ci est dense lorsque le sol est très aminci, moins dense en situation hydromorphe. Le sol influence nettement la composition floristique des peuplements. Mais d'autres facteurs tels la dynamique sylvigénétique ou la dynamique propre à chaque population ont un poids très important. Des résultats divergents conduisent à formuler de nouvelles hypothèses, parmi celles-ci l'influence majeure de l'épaisseur du profil d'altération.
ISSN: 0035-2829

hal-01031882
https://hal.archives-ouvertes.fr/hal-01031882

Éditeur(s) : HAL CCSD Sociedade Entomológica do Brasil
Résumé : Variations in diel activity among hyperdiverse tropical communities of moths, despite representing a key component of niche partitioning between species, have barely been studied so far. Using light trapping from dawn to sunset over a 1-year period in French Guiana, we investigated these variations within and between two families of moths (Sphingidae and Saturniidae). Our results revealed contrasting patterns in flight activity at night between Sphingidae and Saturniidae. Sphingidae reached their peak in species richness and abundance between 7:00 and 8:00 p.m., followed by a decrease around 11:00 p.m. to midnight, whereas Saturniidae were continuously present throughout the night, with a peak around midnight. In addition, we found changes in diel activity among some of the most common genera in each family, highlighting distinct behavioral, physiological, and functional traits among taxa. Given differences in flight activity at different taxonomic levels, it is strongly recommended to monitor by light trapping throughout the night to effectively sample saturniid and sphingid assemblages, even though the activity of Sphingidae sharply declines after midnight. These results improve the general natural history information of tropical moths and reinforce the need of further research on the ecological and taxonomic consequences of differences in diel activity.
ISSN: 1519-566X

hal-01536447
https://hal.archives-ouvertes.fr/hal-01536447
DOI : 10.1007/s13744-014-0264-3
PRODINRA : 320714

Éditeur(s) : HAL CCSD
Résumé : One of the major challenges in forest ecology is to understand the ecology, physiology and potential responses of the> 250000 species of vascular plants of the planet through the categorization of this diversity into functional groups. This approach is essentially based on functional traits analysis, but few investigations were made in tropical areas. The aim of this study was to determine functional groups in two contrasted tropical ecosystems, dry (DF) and mountain rain (MRF) forest (respectively rainfall of 1 200 mm/year and 10 000 mm/year). Guadeloupe Island in FWI presents both these ecosystems spread over less 100 km. In a first time, we developed an original species typology based on 7 "soft" traits, easy to measure (stomatal density, leaf trichom density, chlorophyll content, leaf nitrogen content, specific leaf area, wood density, leaf area, plant height). The method was based on principal component analysis (PCA) and agglomerative hierarchical clustering (AHC) applied to these traits measured at the individual level (Blazy et al., 2009). In a second time, we evaluated the relevance of these soft trait-based groups compared to a typology based on 5 "hard" ecophysiological traits, more costly to quantify but with higher functional significance (difference between predawn and minimum leaf water potential, stomatal conductance, maximal carbon assimilation rate, leaf water potential at 90% of loss of stem hydraulic conductivity). When performed on the dominant canopy species in DF and MRF (a total of 13 species and 60 mature individuals), the typological approach based on soft traits seems relevant to discriminate groups with a distinct functional reality. Through both ecosystems, we obtained 4 homogenous groups. Two were exclusively composed by DF's or MRF's species, indicating that a functional strategy can be linked to specific environmental conditions. The two other groups showed a mix of DF and MRF species indicating that different functional strategies can coexist in the same environment. These mixed groups seem distinct by their ecophysiological features, particularly in term of hydraulic characteristics. One group was composed by drought tolerant species, water spender species, with a high xylem embolism resistance, whereas the second one was composed by water saver species, less resistant to embolism. Therefore, a determination of functional groups based on soft traits could be useful to model ecosystem's responses to environmental changes on a global scale.
Book of Abstracts - isem 2013 - Ecological Modelling for Ecosystem Sustainability
Toulouse, France

hal-00964668
https://hal.archives-ouvertes.fr/hal-00964668

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
ISSN: 0021-8901

hal-01093618
https://hal-agroparistech.archives-ouvertes.fr/hal-01093618
DOI : 10.1111/j.1365-2664.2010.01826.x

Éditeur(s) : HAL CCSD Botanical Society of America
Résumé :  
Tree buckling risk (actual height/critical buckling height) is an important biomechanical trait of plant growth strategies, and one that contributes to species coexistence. To estimate the diversity of this trait among wide samples, a method that minimizes damage to the plants is necessary. On the basis of the rarely used, complete version of Greenhill's model (1881, Proceedings of the Cambridge Philosophical Society 4(2): 65-73), we precisely measured all the necessary parameters on a sample of 236 saplings of 16 species. Then, using sensitivity (variance) analysis, regressions between successive models for risk factors and species ranks and the use of these models on samples of self- and nonself-supporting saplings, we tested different degrees of simplification up to the most simple and widely used formula that assumes that the tree is a cylindrical homogeneous pole. The size factor had the greatest effect on buckling risk, followed by the form factor and the modulus of elasticity of the wood. Therefore, estimates of buckling risk must consider not only the wood properties but especially the form factor. Finally, we proposed a simple but accurate method of assessing tree buckling risk that is applicable to a wide range of samples and that requires mostly nondestructive measurements.
ISSN: 0002-9122

hal-01032059
https://hal.archives-ouvertes.fr/hal-01032059

Éditeur(s) : HAL CCSD
Résumé : Diffusion du document : INRA Documentation de Centre, Domaine de Duclos, 97170 Petitt-Bourg (Guadeloupe, France) Diplôme : DEA
il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : DISSERTATION
Because soil respiration representes 80% of ecosystem respiration, it is a major flux between biosphere and atmosphere. We examined the effects of root and litter exclusion on soil CO! efflux (Rsu1) using trenching and litter exclusion in a tropical plantation constituted of trees seedlings installed in 16 mono-specific stands 20 years ago near Kourou, French Guyana. Soil CO2 efflux was measured using an infra red gas analyser (PP System,EGM4 ) at 16 randomly distributed plot in each treatment: control, root exclusion, litter exclusion and both root and litter exclusion. in the plantation. We measured R'1l1during four periods, and we have collected soil samples, litter biomass and measured moisture at 5 cm depth in the soil. Soil CO, efflux varied significantly among species from 2,8±O,7f1mo l. m''. s' (mean ± standard deviation) to 7.4± 1.7fLmol. n'-' . s ' for Qualea rosea and Vochys ia tomentosa, respectively. 1'0 significant correlation was found between RSIlI variability and soil moisture, which is mostly related to soil texture in the experimental site. Soil CO2 efflux was significantly reduced in litter exclusion treatment and root exclusion plots (6 months litter and/or root exclusion) during ail measurements period and for ail species, compared to control plots. The reduction of soil CO, efflux was higher in plot without root than in plot without litter of control plot (42% and 25%, respectively). There was an import ant specific diversity in these reductions . We estimated the contribution of roof respiration (Rr) to total Rso1 by calculating the difference between Rso1 control and Rsn l root exclusion plot corrected for the decomposition of root that were killed following t re n e h in ~. Thus the heterotrophic component of soil carbon efflux accounts for 46% of total carbon efflux (1,9f1 mol. rn" . s•') while root respiration accounts for 54% of soil carbon release (2,3 ~t mo l. m-2 S-I) . Because there was a negative and significant correlation between microbial respiration (Rrn) and C/N of mature leaves it seemed to be possible to predict Rm if we known the mature leaves quality. In addition a good estimate theorical R ~, values from R~, measured in different treatments.
La respiration du sol en représentant une part de 80% de la respiration de l'écosystème apparaît être un flux majeur entre la biosphère et l'atmosphère. Nous avons étudié les effets de l'exclusion racinaire et de la litière sur le flux de CO, du sol (R ~ , ) en utilisant la méthode de " Trench-plots" et de suppression de litière dans une plantation d'arbres tropicaux. Ces arbres, âgés de 20 ans ont été plantés sur un sol uniforme, près de Kourou en Guyane française, en 16 placeaux mono-spécifiques. Pour mesurer les flux de CO2 provenant du sol, nous avons utilisé un analyseur différentiel de gaz infrarouge portable muni d'une chambre. Les mesures ont été faites sur 4 traitements différents tels que : le contrôle, l'exclusion racinaire, l'exclusion de litière et l'exclusion de litière et de racine et ce, répétés sur chacune des 16 placettes mono-spécifiques. Cette étude comporte 4 campagnes de mesures. Nous avons également effectué des prélèvements de sol de litière et nous avons fait des mesures d’humidité de sol à une profondeur de 5 cm. Les flux de C01 du sol varient fortement entre espèces de 2.8±O.7 ~t m o 1. m-2. sol à 7 A± 1. 7 ~t m o l. m•1 sol pour Qua/ev rosea ct Vochysto tomentasa, respectivement. Il n'existe pas de corrélation significative entre les variations de Rw l ct celles de l'humidité du sol (indication sur la texture du sol de la plantation ). Nous avons observé que Rso1 était significativement plus faible dans les placeaux sans racines et/ou sans litière (6 mois après la mise en place de l'expérimentation) pour toutes les campagnes de mesures et pour toutes les espèces que dans les placeaux contrôlés. Cette réduction du flux de CO2 du sol est plus forte dans les "trench-plots " que dans les traitement s d'exclusion de litière avec 42 et 25% respectivement. Un effet "traitement " et un effet "espèce" important expliquent 3 1"/.. ct 13% de la variabilité totale de R~. Nous avons cherché à connaître la contribution des racines dans les valeurs de R""I. en comparant le flux de CO2 provenant du sol sur des "trench -plot s'' au flux de COl provenant du sol dans les placeaux contrôlés . Cette estimation a été corrigée pour prendre en compte la décomposition des racines tuées par les tranchées. Ainsi, la composante appartenant aux micro -organismes représente 46% du flux total de carbone provenant du sol (1.9Jlmo l. m-2 S•I ) alors que la respiration des racines représente 54% du dégagement de carbone (2 ,3~lmol. m ol . 5-La respiration des micro-organismes pourrait être estimée en mesurant le C/N des feuilles matures puisqu'il existe une corrélation significative et négative entre les deux. Enfin les résultats obtenus sur les différents traitements permettent d'obtenir une bonne estimation de la respiration du sol avec un RSIlI théorique corrélé à 66% avec les valeurs réelles mesurées.
https://hal.archives-ouvertes.fr/hal-01189239

hal-01189239
https://hal.archives-ouvertes.fr/hal-01189239
PRODINRA : 18212

Éditeur(s) : HAL CCSD Elsevier
Résumé : Analyses of tree diversity and community composition in tropical rain forests are usually based either on general herbarium data or on a restricted number of botanical plots. Despite their high taxonomic accuracy, both types of data are difficult to extrapolate to landscape scales. Meanwhile, forestry surveys provide quantitative occurrence data on large areas, and are thus increasingly used for landscape-scale analyses of tree diversity. However, the reliability of these approaches has been challenged because of the ambiguity of the common (vernacular) names used by foresters and the complexity of tree taxonomy in those hyper-diverse communities.We developed and tested a novel approach to evaluate taxonomic reliability of forestry surveys and to propagate the resulting uncertainty in the estimates of several diversity indicators (alpha and beta entropy, Fisher-alpha and Sørensen similarity). Our approach is based on Monte-Carlo processes that simulate communities by taking into account the expected accuracy and reliability of common names. We tested this method in French Guiana, on 9 one-hectare plots (4279 trees – DBH ⩾ 10 cm) for which both common names and standardized taxonomic determinations were available. We then applied our method of community simulation on large forestry inventories (560 ha) at the landscape scale and compared the diversity indices obtained for 10 sites with those computed from precise botanical determination situated at the same localities.We found that taxonomic reliability of forestry inventories varied from 22% (species level) to 83% (family level) in this Amazonian region. Indices computed directly with raw forestry data resulted in incorrect values, except for Gini–Simpson beta-diversity. On the contrary, our correction method provides more accurate diversity estimates, highly correlated with botanical measurements, for almost all diversity indices at both regional and local scales. We obtained a robust ranking of sites consistent with those shown by botanical inventories.These results show that (i) forestry inventories represent a significant part of taxonomic information, (ii) the relative diversity of regional sites can be successfully ranked using forestry inventory data using our method and (iii) forestry inventories can valuably contribute to the detection of large-scale diversity patterns when biases are well-controlled and corrected.The tools we developed as R-functions are available in supplementary material and can be adapted with local parameters to be used for forest management and conservation issues in other regional contexts
ISSN: 0378-1127

hal-01204219
https://hal.archives-ouvertes.fr/hal-01204219
DOI : 10.1016/j.foreco.2014.05.045
PRODINRA : 286554

Éditeur(s) : HAL CCSD Oxford University Press (OUP): Policy B - Oxford Open Option A
Résumé :  
absent
Journal of Experimental Botany

hal-01032195
https://hal.archives-ouvertes.fr/hal-01032195
DOI : 10.1093/jxb/erp276

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : The analysis of fine-scale spatial genetic structure (FSGS) within populations can provide insights into eco-evolutionary processes. Restricted dispersal and locally occurring genetic drift are the primary causes for FSGS at equilibrium, as described in the isolation by distance (IBD) model. Beyond IBD expectations, spatial, environmental or historical factors can affect FSGS. We examined FSGS in seven African and Neotropical populations of the late-successional rain forest tree Symphonia globulifera L. f. (Clusiaceae) to discriminate the influence of drift-dispersal vs. landscape/ecological features and historical processes on FSGS. We used spatial principal component analysis and Bayesian clustering to assess spatial genetic heterogeneity at SSRs and examined its association with plastid DNA and habitat features. African populations (from Cameroon and São Tomé) displayed a stronger FSGS than Neotropical populations at both marker types (mean Sp = 0.025 vs. Sp = 0.008 at SSRs) and had a stronger spatial genetic heterogeneity. All three African populations occurred in pronounced altitudinal gradients, possibly restricting animal-mediated seed dispersal. Cyto-nuclear disequilibria in Cameroonian populations also suggested a legacy of biogeographic history to explain these genetic patterns. Conversely, Neotropical populations exhibited a weaker FSGS, which may reflect more efficient wide-ranging seed dispersal by Neotropical bats and other dispersers. The population from French Guiana displayed an association of plastid haplotypes with two morphotypes characterized by differential habitat preferences. Our results highlight the importance of the microenvironment for eco-evolutionary processes within persistent tropical tree populations.
ISSN: 1932-6203

hal-01608324
https://hal.archives-ouvertes.fr/hal-01608324
DOI : 10.1371/journal.pone.0182515
PRODINRA : 403154
PUBMED : 28771629