Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: In Guadeloupe and Martinique, two French Overseas Departments, colorectal cancer (CRC) has become an essential public health issue. However, little is known about CRC characteristics and the p53 status in these populations, particularly in Guadeloupe, whereas certification of a cancer registry has been recently validated. METHODS: This was a descriptive retrospective study of 201 patients who, between 1995 and 2000, underwent surgery for CRC in the Guadeloupe Teaching Hospital (GlpeTH; 83 patients) and in the Martinique Teaching Hospital (MqueTH; 118 patients). The clinicopathological features and the p53 expression, evaluated with immunohistochemistry, were compared at the time of diagnosis. A relationship between these parameters and the p53 expression was also studied. Data were analysed, using the SPSS computer software version 17.0. RESULTS: No statistical difference was found between the two groups of patients regarding age (p = 0.60), percentage of young patients (<=50 years; p = 0.94)), sex (p = 0.47), histological type (p = 0.073) and tumour sites (p = 0.65), although the GlpeTH patients were diagnosed with more distal colon cancers (54.2%) than the Mque TH patients (47.4%). By contrast, a significant difference was found regarding the tumour grade (p < 0.0001), the pTNM stage (p = 0.045) and the pT stage (p < 0.0001). Regarding p53 expression, solely for the MqueTH patients, nuclear expression was associated with pTNM, the percentage of p53 negative tumours increasing with the progression of the pTNM stages (p = 0.029). CONCLUSIONS: For the first time, this study reveals discrepancies in clinicopathological features and in the p53 status between the two groups of patients. The GlpeTH patients were diagnosed with more moderated CRCs but with few CRCs at pTNM IV stage. By contrast, the MqueTH patients were diagnosed with more differentiated tumours, but with many more CRCs at pTNM IV stage. This paradox may be due to differences in tumour location (distal vs proximal), multiplicity of the genetic profiles of patients, or patients getting treatment elsewhere. Although our study is limited due to its small size, it emphasizes the originality of our results.
ISSN: 1472-6890

inserm-00971313
http://www.hal.inserm.fr/inserm-00971313
http://www.hal.inserm.fr/inserm-00971313/document
http://www.hal.inserm.fr/inserm-00971313/file/1472-6890-14-12.pdf
DOI : 10.1186/1472-6890-14-12

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Diffusion parameters for HTO, 36Cl−, and 125I− were determined on Upper Toarcian argillite samples from the Tournemire Underground Research Laboratory (Aveyron, France) using the through diffusion technique. The direction of diffusion was parallel to the bedding plane. The purpose of the present study was 3-fold; it was intended (i) to confirm the I− interaction with Upper Toarcian argillite and to verify the effects of initial I− concentration on this affinity, as previously observed by means of radial diffusion experiments, (ii) to highlight any discrepancy between Cl− and I− diffusivity, and (iii) to investigate the effect of an increase of the ionic strength of the solution on the anionic tracers' diffusive behaviour. The results show that the effective diffusion coefficient (De) and diffusion accessible porosity (εa) values obtained with an ionic strength (I.S.) synthetic pore water of 0.01 eq L−1 are: De = 2.35-2.50 × 10−11 m2 s−1 and εa = 12.0-15.0% for HTO, and De = 14.5-15.5 × 10−13 m2 s−1 and εa = 2.5-2.9% for 36Cl−. Because of anionic exclusion effects, anions diffuse slower and exhibit smaller diffusion accessible porosities than HTO, taken as a water tracer. The associated effective diffusion coefficient (De) and rock capacity factor (α) obtained for 125I are: De = 7.00-8.60 × 10−13 m2 s−1 and α = 4.3-7.2%. Such values make it possible to calculate low 125I distribution ratios (0.0057 < RD < 0.0192 mL g−1) which confirm the trend indicating that the 125I rock capacity factor increases with the decrease of the initial I− concentration. Additional through-diffusion experiments were carried out with a higher ionic strength synthetic pore water (I.S. = 0.11 eq L−1). No evolution of HTO diffusion parameters was observed. The anionic tracers' effective diffusion coefficient increased by a factor of two but no clear evolution of their accessible porosity was observed. Such a paradox could be related to the particularly small mean pore size of the Upper Toarcian argillite of Tournemire. The most significant finding of this study is the large discrepancy (factor of two) between the values of the effective diffusion coefficient for 125I and 36Cl. Whatever the ionic strength of the synthetic solution used, 125I exhibited De values two times lower than those of 36Cl. A detailed explanation for this difference cannot be given at present even if a hypothesis based on ion-pairing or on steric-exclusion cannot be excluded. This makes questionable the assumption usually made for quantifying 125I sorption and postulating that 36Cl and 125I would diffuse in the same porosity. In other terms, at Tournemire, 125I sorption could be more pronounced than previously indicated.
ISSN: 0883-2927

hal-00757749
https://hal.archives-ouvertes.fr/hal-00757749
DOI : 10.1016/j.apgeochem.2011.12.017

Éditeur(s) : Wiley-blackwell Publishing, Inc
Résumé : Oceanic larvae of the European (Anguilla anguilla) and American (A. rostrata) eels have to cross the Atlantic Ocean from the Sargasso Sea to European or North American coasts before entering continental habitats. In some European rivers, eel recruitment is now < 1% of levels in the 1980s. A better understanding of the effects of anthropogenic pressures and environmental fluctuations on eel larvae and subsequent recruitment is a prerequisite to build efficient management plans. The present paper provides insight into the critical oceanic phase of the eel life cycle with a focus on the duration of the larval migration whose estimates varies between 7 months and more than 2 years in both species. Does this range correspond to a natural variability in larval duration or does it stem from methodological artefacts? We first review the different methods used to estimate the duration of larval migration and critically describe their possible sources of misinterpretation. We then evaluate the consistency of these methods with the current knowledge about the ecology and physiology of eel larvae and the physical oceanography. While a moderate discrepancy in migration duration was found between methods for the American eel, the discrepancy was large in the European eel. In this species, otolith microstructure studies indicated migration durations between 7 and 9 months, while other methods pointed to durations of about 2 years. We show that estimates in favour of a long migration duration seem more robust to methodological caveats than methods estimating short durations of migration.
Fish And Fisheries (1467-2960) (Wiley-blackwell Publishing, Inc), 2010-09 , Vol. 11 , N. 3 , P. 289-306

Droits : 2010 Blackwell Publishing Ltd.
http://archimer.ifremer.fr/doc/00011/12208/9033.pdf
DOI:10.1111/j.1467-2979.2010.00362.x
http://archimer.ifremer.fr/doc/00011/12208/

Éditeur(s) : HAL CCSD Elsevier
Résumé : Vegetation phenology is the study of the timing of seasonal events that are considered to be the result of adaptive responses to climate variations on short and long time scales. In the field of remote sensing of vegetation phenology, phenological metrics are derived from time series of optical data. For that purpose, considerable effort has been specifically focused on developing noise reduction and cloud-contaminated data removal techniques to improve the quality of remotely-sensed time series. Comparative studies between time series composed of satellite data acquired under clear and cloudy conditions and from radiometric data obtained with high accuracy from ground-based measurements constitute a direct and effective way to assess the operational use and limitations of remote sensing for predicting the main plant phenological events. In the present paper, we sought to explicitly evaluate the potential use of MODerate resolution Imaging Spectroradiometer (MODIS) remote sensing data for monitoring the seasonal dynamics of different types of vegetation cover that are representative of the major terrestrial biomes, including temperate deciduous forests, evergreen forests, African savannah, and crops. After cloud screening and filtering, we compared the temporal patterns and phenological metrics derived from in situ NDVI time series and from MODIS daily and 16-composite products. We also evaluated the effects of residual noise and the influence of data gaps in MODIS NDVI time series on the identification of the most relevant metrics for vegetation phenology monitoring. The results show that the inflexion points of a model fitted to a MODIS NDVI time series allow accurate estimates of the onset of greenness in the spring and the onset of yellowing in the autumn in deciduous forests (RMSE <= one week). Phenological metrics identical to those provided with the MODIS Global Vegetation Phenology product (MDC12Q2) are less robust to data gaps, and they can be subject to large biases of approximately two weeks or more during the autumn phenological transitions. In the evergreen forests, in situ NDVI time series describe the phenology with high fidelity despite small temporal changes in the canopy foliage. However, MODIS is unable to provide consistent phenological patterns. In crops and savannah, MODIS NDVI time series reproduce the general temporal patterns of phenology, but significant discrepancies appear between MODIS and ground-based NDVI time series during very localized periods of time depending on the weather conditions and spatial heterogeneity within the MODIS pixel. In the rainforest, the temporal pattern exhibited by a MODIS 16-day composite NDVI time series is more likely due to a pattern of noise in the NDVI data structure according to both rainy and dry seasons rather than to phenological changes. More investigations are needed, but in all cases, this result leads us to conclude that MODIS time series in tropical rainforests should be interpreted with great caution. (C) 2013 Elsevier Inc. All rights reserved.
ISSN: 0034-4257

hal-01032407
https://hal.archives-ouvertes.fr/hal-01032407
DOI : 10.1016/j.rse.2013.01.010

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : We present detailed biostratigraphy based on conodonts and palaeoenvironmental trends deduced from microfacies and conodont abundance through the Famennian (Late Devonian) at Col des Tribes (Montagne Noire, France). The succession is characterized by micritic limestones deposited in settings oscillating between mid to outer ramp. Facies contain poor fauna, widely dominated by nektonic organisms. This section is complete and one of the most conodont-rich for the Famennian of the north Gondwana-related area. The Upper Kellwasser event (Frasnian–Famennian boundary) and the Hangenberg (Devonian–Carboniferous boundary) have been lithologically identified. They are characterized by decimetre-thick black dysoxic to anoxic argillaceous sediments. The Condroz and annulata events, although not materialized by lithological changes, have been positioned due to the precise stratigraphy. The first event occurred during the deposition of condensed ferruginous facies (griotte limestones) and the second event during the deposition of micrites barren of benthic fauna. The combination of information from both facies and conodont biofacies changes allows a general sea-level curve through the entire Famennian for north Gondwana to be proposed for the first time. At Col des Tribes, the general trend is a slight deepening upwards from triangularis to trachytera zones, then a pronounced shallowing-upwards trend from upper trachytera to praesulcata zones. This curve correlates with the well-known reference curve from Euramerica concerning the late Famennian (trachytera to praesulcata Zones). There are some discrepancies in minor cycles which can be explained by tectonical phenomena at the onset of the edification of the Variscan belt in Europe.
ISSN: 0016-7568

hal-01115222
https://hal.archives-ouvertes.fr/hal-01115222
DOI : 10.1017/S0016756813000927

Éditeur(s) : HAL CCSD Elsevier
Résumé : Une approche par datations multiples a été menée sur les dépôts de sédiments de crue retrouvés dans les gorges du Gardon (Languedoc). Le plomb-210, le césium-137 et l’analyse géochimique des sédiments contaminés par les mines ont été utilisés pour reconstruire l’histoire des dépôts de crue. Cette approche a été combinée avec l’historique des crues du Gardon depuis 1890 pour affiner l’approche géochronologique. Au niveau de la cavité GG et de la terrasse GE les analyses ont permis d’illustrer les mécanismes d’érosion-redéposition pouvant perturber les séquences de sédiments. Les enregistrements des dépôts de sédiments de crue sont complets sur la terrasse GE située à 10 m au-dessus du lit mineur à partir de 1958, et incomplets auparavant. Sur la période 1880-1958, 25 crues ont eu un débit suffisant (>1450 m3/s) pour recouvrir la terrasse, alors que l’on recense seulement 5 à 6 crues depuis 1958 (pour un débit de submersion supérieur à 1700 m3/s). L’augmentation progressive du débit de submersion et la fréquence moindre d’inondation de la terrasse ont pu permettre sur la période récente la stabilisation de la couche de surface par la végétation et limiter l’érosion lors de crues importantes. Les enregistrements semblent complets dans la cavité GG située à 15 m au-dessus du lit mineur. La fréquence moindre de submersion à ce niveau plus élevé peut expliquer une meilleure stabilisation des dépôts de crue, rendus moins vulnérables à l’érosion. La datation au radiocarbone a été testée même si elle ne permet pas de dater avec précision les dépôts de crue des derniers siècles. Sur la terrasse GE, 80% des dates au carbone 14 sur charbon de bois sont beaucoup trop vieilles par rapport aux autres techniques de datation, ce qui peut s’expliquer par une remobilisation/déstockage de charbons de bois anciens. Les datations radiocarbone sur graines donnent de meilleurs résultats, car issues d’une production annuelle, plus facilement décomposable et moins sujette à des dépôts intermédiaires. Au final, il apparaît que la technique de datation par radiocarbone sur des charbons de bois retrouvés dans les séquences sédimentaires n’est pas fiable, alors qu’elle est la plus pratiquée en paléo-hydrologie. L’utilisation combinée du plomb-210, du césium-137, de l’analyse géochimique des sédiments et des informations sur les crues historiques a permis de discriminer et de dater les différents dépôts de crue de ce dernier siècle dans la cavité GG et la terrasse GE. / A multidating approach was carried out on slackwater flood deposits, preserved in valley side rock cave and terrace, of the Gardon River in Languedoc, southeast France. Lead-210, caesium-137, and geochemical analysis of mining-contaminated slackwater flood sediments have been used to reconstruct the history of these flood deposits. These age controls were combined with the continuous record of Gardon flow since 1890, and the combined records were then used to assign ages to slackwater deposits. The stratigraphic records of terrace GE and cave GG were excellent examples to illustrate the effects of erosion/preservation in a context of a progressively self-censoring, vertically accreting sequence. The sedimentary flood record of the terrace GE located at 10 m above the channel bed is complete for years post-1958 but incomplete before. During the 78-year period 1880-1958, 25 floods of a sufficient magnitude (> 1450 m3/s) have covered the terrace. Since 1958, however, the frequency of inundation of the deposits has been lower:only 5 or 6 floods in 52 years have been large enough to exceed the necessary threshold discharge (> 1700 m3/s). The progressive increase of threshold discharge and the reduced frequency of inundation at the terrace could allow stabilisation of the vegetation cover and improved protection against erosion from subsequent large magnitude flood events. The sedimentary flood record seems complete for cave GG located at 15 m above the channel bed. Here, the low frequency of events would have enabled a high degree of stabilisation of the sedimentary flood record, rendering the deposits less susceptible to erosion. Radiocarbon dating are used in this study and compared to the other dating techniques.Eighty percent of radiocarbon dates on charcoals were considerably older than those obtained by the other techniques in the terrace. On the other hand, radiocarbon dating on seeds provided better results. This discrepancy between radiocarbon dates on charcoal and seeds is explained by the nature of the dated material (permanent wood vs. annual production and resistance to degradation process). Finally, we showed in this study that although the most common dating technique used in paleoflood hydrology is radiocarbon dating, usually on charcoal preserved within slackwater flood sediments, this method did not permitus to define a coherent age model. Only the combined use of lead-210, caesium-137, and geochemical analysis of mining-contaminated sediments with the instrumental flood record can be applied to discriminate and date the recent slackwater deposits of the terrace GE and cave GG.
ISSN: 0169-555X

hal-01059669
https://hal.archives-ouvertes.fr/hal-01059669
https://hal.archives-ouvertes.fr/hal-01059669/document
https://hal.archives-ouvertes.fr/hal-01059669/file/ly2014-pub00040953.pdf
IRSTEA : PUB00040953

Éditeur(s) : HAL CCSD Springer/Terra Scientific Publishing Company
Résumé : International audience
Numerous phases of igneous activity took place in Egypt during the Mesozoic and the Cenozoic but no paleointensity results have ever been published from these rocks. Therefore a preliminary Survey was conducted in the northern part of Egypt and in Sinai to test the Suitability of these basalts for paleointensity determinations. Three Oligo-Miocene sites have been sampled north of Cairo: Abu Zaabal, Qatrani, and 6th of October City. In Sinai, we sampled Jurassic basalts in Wadi Budra and Oligo-Miocene rocks from Wadi Nukhul. The main magnetic carriers of these rocks are titanomagnetites with varying Ti content. Large secondary components are present in most middle Jurassic basalts and discrepancies remain in the directional analysis so this sill cannot be used for paleointensity experiments and the associated poles should not be considered for paleomagnetic reconstructions either. Directional analysis of the Oligo-Miocene basalts is very straightforward and updated mean VGPs have been calculated from the Cairo area (68.9 degrees N, 91.3 degrees E; Kappa = 274; A(95) = 3.7) and from Wadi Nukhul (72.7 degrees N, 13.4 degrees E; Kappa = 528; A(95) = 5.4). Pseudo-paleointensity results obtained as well from stable Egypt as from Sinai are promising, with values lower or similar (between 29 to 58 mu T) to present-day field intensity.
ISSN: 1343-8832

hal-00413086
https://hal.archives-ouvertes.fr/hal-00413086

Éditeur(s) : HAL CCSD Society of Environmental Toxicology and Chemistry Press (SETAC)
Résumé : International audience
Tributyltin (TBT) and triphenyltin (TPT) are emblematic endocrine disruptors, which have been mostly studied in gonochoric prosobranchs. Although both compounds can simultaneously occur in the environment, they have mainly been tested separately for their effects on snail reproduction. Because large discrepancies in experimental conditions occurred in these tests, the present study aimed to compare the relative toxicity of TBT and TPT under similar laboratory conditions in the range of 0 ng Sn/L to 600 ng Sn/L. Tests were performed on the simultaneous hermaphrodite Lymnaea stagnalis, a freshwater snail in which effects of TPT were unknown. Survival, shell length, and reproduction were monitored in a 21-d semistatic test. Frequency of abnormal eggs was assessed as an additional endpoint. Triphenyltin hampered survival while TBT did not. Major effects on shell solidity and reproduction were observed for both compounds, reproductive outputs being more severely hampered by TBT than by TPT. Considering the frequency of abnormal eggs allowed increasing test sensitivity, because snail responses to TBT could be detected at concentrations as low as 19 ng Sn/L. However, the putative mode of action of the 2 compounds could not be deduced from the structure of the molecules or from the response of apical endpoints. Sensitivity of L. stagnalis to TBT and TPT was compared with the sensitivity of prosobranch mollusks with different habitats and different reproductive strategies.
Environmental Toxicology and Chemistry

hal-00877955
https://hal.archives-ouvertes.fr/hal-00877955
DOI : 10.1002/etc.2200
PUBMED : 23450754

Éditeur(s) : HAL CCSD Borntraeger Science Publishers
Résumé : This study characterizes the stratigraphical context as well as the palaeoenvironmental and sealevel trends during the Late Frasnian and Famennian in the Buschteich section (Thuringia, Germany). An integrated approach combines conodont biostratigraphy, chemostratigraphy based on carbon and oxygen isotopes, conodont biofacies analyses and investigations of the morphotypes of foraminifera that occur in the section was applied. Conodonts provided a fine-scale biostratigraphical framework. All the Famennian conodont biozones were identified, with the exception of the three lowest. The Frasnian – Famennian transition was further identified by a positive carbon isotope excursion. This continuous Famennian record is developed in a condensed limestone succession. The reddish Griotte facies, typical of strata of this period, were not documented. Black shales were not developed except for an interval of dark colored mud rocks corresponding to the Hangenberg event at the top of the section. The carbonate succession of Buschteich was deposited in an outer ramp environment, pelagic organisms are the dominant fauna. This is corroborated by the overall dominance of the deep-water conodont genus Palmatolepis. Microfacies, conodont biofacies and foramini fera indicated a deepening trend from the Lower crepida to the Lower rhomboidea Zone, followed by a shallowing trend from the Upper rhomboidea to the praesulcata Zone. This sequence overall matches the sea level reference curve for Euramerica. The timing of maximum water depth at Buschteich, as well as the general sea-level reference record, differs from the Col des Tribes (Montagne Noire, France). Differential uplift or overprinting of the long-term eustatic changes may be the cause of the discrepancy in the local sea-level records.
ISSN: 0078-0421

hal-01623111
https://hal.archives-ouvertes.fr/hal-01623111
DOI : 10.1127/nos/2016/0318

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Although subducting slabs undergo a bending deformation that resists tectonic plate motions, the magnitude of this resistance is not known because of poor constraints on slab strength. However, because slab bending slows the relatively rapid motions of oceanic plates, observed plate motions constrain the importance of bending. We estimated the slab pull force and the bending resistance globally for 207 subduction zone transects using new measurements of the bending curvature determined from slab seismicity. Predicting plate motions Using a global mantle flow model, we constrain the viscosity of the bending slab to be at most similar to 300 times more viscous than the upper mantle: stronger slabs are intolerably slowed by the bending deformation. Weaker slabs, however, cannot transmit a pull force sufficient to explain rapid trenchward plate motions unless slabs stretch faster than seismically observed rates of similar to 10(-15) s(-1). The constrained bending viscosity (similar to 2 x 10(23) Pa s) is larger than previous estimates that yielded similar or larger bending resistance (here similar to 25% of forces). This apparent discrepancy occurs because slabs bend more gently than previously thought, with an average radius of curvature of 390 km that permits subduction Of Strong slabs. This gentle bending may ultimately permit plate tectonics on Earth.
ISSN: 0012-821X

hal-00412383
https://hal.archives-ouvertes.fr/hal-00412383
DOI : 10.1016/j.epsl.2008.05.009

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Probabilistic seismic hazard analyses (PSHA) are commonly based on frequency magnitude statistics from 50-100 yearlong earthquake catalogs, assuming that these statistics are representative of the longer-term frequency of large earthquakes. We test an alternative PSHA approach in continental western Canada, including adjacent areas of northwestern U. S. A., using regional strain rates derived from 179 Global Positioning System (GPS) horizontal velocities. GPS strain rates are converted to earthquake statistics, seismic moment rates, and ground shaking probabilities in seismic source zones using a logic-tree method for uncertainty propagation. Median GPS-based moment rates and shaking estimates agree well with those derived from earthquake catalogs in only two zones (Puget Sound and mid-Vancouver Island). In most other zones, median GPS-based moment rates are 6-150 times larger than those derived from earthquake catalogs (shaking estimates 2-5 times larger), although the GPS-based and catalog estimates commonly agree within their 67% uncertainties. This discrepancy may represent an under-sampling of long-term moment rates and shaking by earthquake catalogs in some zones; however a systematic under-sampling is unlikely over our entire study area. Although not demonstrated with a high confidence level, long-term regional aseismic deformation may account for a significant part of the GPS/catalog discrepancy and, in some areas, represent as much as 90% of the total deformation budget. In order to integrate GPS strain rates in PSHA models, seismic versus aseismic partitioning of long-term deformation needs to be quantified and understood in terms of the underlying mechanical processes.
ISSN: 0148-0227

hal-00689004
https://hal.archives-ouvertes.fr/hal-00689004
DOI : 10.1029/2011JB008213

Éditeur(s) : HAL CCSD SAGE Publications
Résumé : International audience
A multiproxy analysis of lacustrine sediments cored in Grand-Case Pond at Saint-Martin, north of the Lesser Antilles archipelago, reveals three distinct climatic periods for the last 3700 years. From 3700 to ~2500 yr cal. BP and from 1150 yr cal. BP to the present, carbonate mud deposition occurred in connection with pond lowstands. These periods were also punctuated by severe drought events, marked by gypsum laminae, and hurricane landfalls, leading to marine sand inputs into the pond. The intermediate time interval, from 2500 to 1150 yr cal. BP, is typified by black organic mud deposition, suggesting that hypoxic to anoxic conditions prevailed at the pond bottom. These were probably linked with a perennial pond highstand and reflect more uniform and wetter climatic conditions than today. The carbon isotopic composition of the ostracod Perissocytheridea bisulcata shows that the lowest δ13C values are recorded during the hypoxic periods, as a consequence of bacterial recycling of isotopically depleted organic matter. Such a climatic history agrees closely with that documented from other records in the Caribbean area, such as the Cariaco Basin, central coast of Belize or Barbados. By constrast, discrepancies seem to emerge from the comparison between hurricane activity recorded at Saint-Martin on the one hand and Vieques (Puerto Rico) on the other hand. We explain this apparent contradiction by a balance between two distinct storm paths in response to latitudinal shifts of the Intertropical Convergence Zone (ITCZ). Stronger storm activity over the Gulf coast and the inner Caribbean Sea is favoured by a southern position of the ITCZ in connection with dry climatic conditions. Plausible links with the North Atlantic Oscillation (NAO) are also suggested.
ISSN: 0959-6836

halshs-00758748
https://halshs.archives-ouvertes.fr/halshs-00758748
https://halshs.archives-ouvertes.fr/halshs-00758748/document
https://halshs.archives-ouvertes.fr/halshs-00758748/file/Malaize_et_al._2011_cor.pdf
DOI : 10.1177/0959683611400198

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The modern high topography of the Tianshan resulted from the reactivation of a Paleozoic orogenic belt by the India/Asia collision. Today, the range exhibits tectonically active forelands and intermontane basins. Based on quantitative morphotectonic observations and age constraints derived from cosmogenic 10Be dating, single-grain post-infrared infrared stimulated luminescence (p-IR IRSL) dating and modeling of fault scarp degradation, we quantify the deformation in the Nalati and Bayanbulak intermontane basins in the central Eastern Tianshan. Our results indicate that at least 1.4 mm/yr of horizontal crustal shortening is accommodated within these two basins. This shortening represents over 15% of the 8.5 ± 0.5 mm/yr total shortening rate across the entire range at this longitude. This shortening rate implies that the Eastern Central Tianshan is thickening at a mean rate of ∼1.4 mm/yr, a rate that is significantly higher than the average denudation rate of 0.14 mm/yr derived from our cosmogenic analysis. This discrepancy suggests that the Tianshan range has not yet reached a steady-state topography and remains in a transient state of topographic growth, most likely due to limited denudation rates driven by the arid climate of Central Asia.
ISSN: 0012-821X

insu-01610154
https://hal-insu.archives-ouvertes.fr/insu-01610154
DOI : 10.1016/j.epsl.2017.09.025

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
To investigate the contribution of whole-body post-mortem computed tomography (PMCT) in sudden unexpected death in infants and children.METHODS:Forty-seven cases of sudden unexpected death in children investigated with radiographic skeletal survey, whole-body PMCT and autopsy were enrolled. For imaging interpretation, non-specific post-mortem modifications and abnormal findings related to the presumed cause of death were considered separately. All findings were correlated with autopsy findings.RESULTS:There were 31 boys and 16 girls. Of these, 44 children (93.6 %) were younger than 2 years. The cause of death was found at autopsy in 18 cases (38.3 %), with 4 confirmed as child abuse, 12 as infectious diseases, 1 as metabolic disease and 1 as bowel volvulus. PMCT results were in accordance with autopsy in all but three of these 18 cases. Death remains unexplained in 29 cases (61.7 %) and was correlated with no abnormal findings on PMCT in 27 cases. Major discrepancies between PMCT and autopsy findings concerned pulmonary analysis.CONCLUSIONS:Whole-body PMCT may detect relevant findings that can help to explain sudden unexpected death and is essential for detecting non-accidental injuries. We found broad concordance between autopsy and PMCT, except in a few cases of pneumonia. It is a non-invasive technique acceptable to relatives.KEY POINTS:• Whole-body post-mortem computed tomography (PMCT) is an effective non-invasive method. • Whole-body PMCT is essential for detecting child abuse in unexpected death. • There is concordance on cause of death between PMCT and autopsy. • Whole-body PMCT could improve autopsy through dissection and sampling guidance. • PMCT shows findings that may be relevant when parents reject autopsy.
ISSN: 0938-7994

inserm-01576306
http://www.hal.inserm.fr/inserm-01576306
DOI : 10.1007/s00330-012-2738-1
PUBMED : 23242003

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Background: The impact of hepatitis B virus (HBV) genomic variability on the measurement of HBsAg level has been poorly evaluated. Objective: This study was designed to compare the performance of all the available assays measuring HBsAg level in this setting. Study design: A large selection of wild type HBV genotypes (n = 184) and HBsAg strains harboring mutations in the S gene (n = 81) from clinical samples was studied with three HBsAg quantification assays: Architect HBsAg (Abbott), LiaisonXL Murex HBsAg Quant (DiaSorin) and the Elecsys HBsAgII (Roche). Results: The overall percentage of positive results was 99.2% for Abbott, 98.9% for DiaSorin and 98.1% for Roche. Abbott and Roche assays provided an excellent concordance in HBsAg quantification (global mean bias of -0.006 logIU/mL). By contrast, DiaSorin underestimated HBsAg level with values 0.112 logIU/ml and 0.103 logIU/ml lower than Abbott and Roche, respectively. By contrast, DiaSorin slightly over quantified gtC(2.5% over the expected value) while Abbott provided values 6.2% lower than expected and 16.2% lower than what observed for the other genotypes. HBsAg quantitative assays were influenced by HBs protein substitutions irrespective to the genotype but no specific protein pattern that would particularly impair the quantification by one technique has been identified. However, Roche seemed to be particularly impacted by substitutions at 145 residue: 75% of under quantified samples carried a substituted 145 residue. Conclusion: This head-to-head comparison indicates a good correlation between all current systems used to quantify HBsAg but clearly shows an influence of both the genotype and the presence of "a" determinant variants in the absolute quantification of HBsAg. While these discrepancies may not translate into major clinical consequence, they may explain an absence of detection of weak concentration of HBsAg on some systems. (C) 2017 Elsevier B.V. All rights reserved.
ISSN: 1386-6532

hal-01588395
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01588395
DOI : 10.1016/j.jcv.2017.02.001
PUBMED : 28189936

Éditeur(s) : HAL CCSD
Résumé : International audience
OBJECTIVE: A better understanding of the perception of the rehabilitative and medical care's by persons with cerebral palsy (CP) and their families may help in providing better adherence to these cares. The main objective of this study was to assess overall satisfaction, self-perception of effectiveness and tolerance of the rehabilitative and medical cares in individuals with CP. MATERIAL AND METHODS: This was a cross-sectional questionnaire-based study. A total of 950 questionnaires were sent to French Britain children and adults with CP. Perceived effectiveness and tolerance were evaluated for each types of care using a Likert scale from 1 to 7 and overall satisfaction by a visual analog scale. Comparison of means and uni-and-multivariate analyzes for correlation analysis were carried out. RESULTS: A total of 512 (53.9%) questionnaires were analyzed; 230 (44.9%) were children and 54% were walkers (GMFCS I, II or III). The overall satisfaction was 6.83/10 (SD 2.21). Orthoptic, orthosis and physical therapy were reported to be the most effective cares (5.34/5.30/5.29) while botulinum toxins, intrathecal baclofen, and speech therapy the least effective (4.42/4.52/5.02). Intrathecal baclofen, orthosis and botulinum toxin were the less well-tolerated therapies (4.75/5.11/5.28). Antiepileptic drugs were reported to be the most effective and best-tolerated drug contrary to analgesics. Overall, satisfaction was inversely correlated to the GMFCS in the multivariate analysis (P=0.013). The perceived effectiveness of occupational therapy, botulinum toxin injections and physiotherapy are inversely related to GMFCS in the univariate analyzes. The tolerance and effectiveness of the orthosis have a positive correlation with the GMFCS in the uni-and-multivariate analyzes. DISCUSSION/CONCLUSION: This study shows a good overall satisfaction on medical and paramedical care but highlights a large discrepancy between user self-perception and evidence base medicine. More communication about the therapies between professionals and individuals with cerebral palsy is needed and comparing opinions of patients and their families to literature can give us the keys to improve communication around these therapies.
Annals of Physical and Rehabilitation Medicine

hal-01477212
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01477212
DOI : 10.1016/j.rehab.2016.07.014
PUBMED : 27676935

Éditeur(s) : Academic Press Ltd- Elsevier Science Ltd
Résumé : Over the last decade, RNA interference pathways have emerged in eukaryotes as critical regulators of many diverse biological functions including, among others, transcriptional gene regulation, post-transcriptional gene silencing, heterochromatin remodelling, suppression of transposon activity, and antiviral defences. Although this gene silencing process has been reported to be relatively well conserved in species of different phyla, there are important discrepancies between plants, invertebrates and mammals. In penaeid shrimp, the existence of an intact and functional RNAi machinery is supported by a rapidly growing body of evidence. However, the extent to which this process participates to the host immune responses remains poorly defined in this non-model organism. This review summarizes our current knowledge of RNAi mechanisms in shrimp and focuses on their implication in antiviral activities and shrimp immune defences.
Fish & Shellfish Immunology (1050-4648) (Academic Press Ltd- Elsevier Science Ltd), 2013-04 , Vol. 34 , N. 4 , P. 1002-1010

Droits : 2012 Elsevier Ltd. Published by Elsevier Ltd
http://archimer.ifremer.fr/doc/00119/23063/20899.pdf
DOI:10.1016/j.fsi.2012.06.008
http://archimer.ifremer.fr/doc/00119/23063/

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : We designed a thermo-mechanical numerical model for fast-spreading mid-ocean ridge with variable viscosity, hydrothermal cooling, latent heat release, sheeted dyke layer, and variable melt intrusion possibilities. The model allows for modulating several accretion possibilities such as the "gabbro glacier" (G), the "sheeted sills" (S) or the "mixed shallow and MTZ lenses" (M). These three crustal accretion modes have been explored assuming viscosity contrasts of 2 to 3 orders of magnitude between strong and weak phases and various hydrothermal cooling conditions depending on the cracking temperatures value. Mass conservation (stream-function), momentum (vorticity) and temperature equations are solved in 2-D cartesian geometry using 2-D, alternate direction, implicit and semi-implicit finite-difference scheme. In a first step, an Eulerian approach is used solving iteratively the motion and temperature equations until reaching steady states. With this procedure, the temperature patterns and motions that are obtained for the various crustal intrusion modes and hydrothermal cooling hypotheses display significant differences near the mid-ocean ridge axis. In a second step, a Lagrangian approach is used, recording the thermal histories and cooling rates of tracers travelling from the ridge axis to their final emplacements in the crust far from the mid-ocean ridge axis. The results show that the tracer's thermal histories are depending on the temperature patterns and the crustal accretion modes near the mid-ocean ridge axis. The instantaneous cooling rates obtained from these thermal histories betray these discrepancies and might therefore be used to characterize the crustal accretion mode at the ridge axis. These deciphering effects are even more pronounced if we consider the average cooling rates occurring over a prescribed temperature range. Two situations were tested at 1275-1125 °C and 1050-850 °C. The first temperature range covers mainly the crystallization range that is characteristic of the high temperature areas in the model (i.e. the near-mid-oceanic-ridge axis). The second temperature range corresponds to areas in the model where the motion is mainly laminar and the vertical temperature profiles are closer to conductive. Thus, this situation results in less discriminating efficiency among the crustal accretion modes since the thermal and dynamic properties that are described are common to all the crustal accretion modes far from the ridge axis. The results show that numerical modeling of thermo-mechanical properties of the lower crusts may bring useful information to characterize the ridge accretion structure, hydrothermal cooling and thermal state at the fast-spreading ridges and may open discussions with petrological cooling rate results.
ISSN: 1991-959X

hal-00907012
https://hal.archives-ouvertes.fr/hal-00907012
DOI : 10.5194/gmd-6-1659-2013

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
A set of synthetic aggregates, containing mixtures of calcite and muscovite, were compacted with varying uniaxial loads ranging from 20 MPa up to 400 MPa. Their elastic properties have been measured using compressional and shear waves in confining hydrostatic pressures up to 475 MPa. Measured seismic velocities are shown to depend on 1) the ratio of calcite to muscovite, 2) the uniaxial load used during sample manufacturing, and 3) the porosity amount prior to velocity measurements. The matrix framework may also affect the seismic velocities, but this effect is not easily quantifiable. In general, measured seismic velocities decrease with increasing muscovite content and porosity. Elastic properties have been calculated based on texture measurements, which were obtained by neutron diffraction. The calculated velocities are based on the calcite and muscovite single crystal elastic tensors, their orientation distribution functions, and their modal fractions. A large discrepancy is apparent between calculated and measured velocities, where the former always overestimate the actual velocities. Shear waves display less of a difference between calculated and measured values, than do compressional waves, indicating that waves propagating by shearing are less affected by sample porosity and matrix framework. A better agreement between measured and calculated seismic velocities arises when the initial porosity is taken into account, using a differential effective medium model. Seismic anisotropy is evident from both measured and calculated velocities, and is low for samples containing pure calcite, but becomes prominent as the muscovite concentration increases. The intensity of anisotropy further depends on the uniaxial load used during sample compaction and the initial porosity.
ISSN: 0148-0227

hal-00512666
https://hal.archives-ouvertes.fr/hal-00512666
DOI : 10.1029/2009JB006523

Éditeur(s) : Elsevier
Résumé : This paper examines the fishing of blackfin tuna (Thunnus atlanticus) around Fish Aggregating Devices (FADs) in Martinique (French West Indies). It is based on the compared analysis of catches from monthly experimental fishing surveys and sampling of commercial landings. The data collected in these two different ways allowed comparison of blackfin tuna length frequencies. A large part of the commercial landings were made up of young immature tuna with a fork length of less than 40 cm, whereas the experimental longline catches were mainly made up of fish with a fork length ranging between 55 and 75 cm. We give evidence that these discrepancies were mostly due to the fishing technique used. Indeed, contrarily to the experimental surveys, Martinican fishermen only fish during daytime and usually on the surface by trolling. This way, fishermen do not have access to the largest fish, which are found deeper. Out results suggested that a new fishing technique such as vertical longlining, could improve commercial catches of big blackfin tuna under FADs. (C) 2000 Ifremer/CNRS/INRA/IRD/Cemagerf/Editions scientifiques et medicales Elsevier SAS.
Aquatic Living Resources (0990-7440) (Elsevier), 2000-07 , Vol. 13 , N. 4 , P. 259-262

Droits : 2000 Ifremer/CNRS/INRA/IRD/Cemagref/Éditions scientifiques et médicales Elsevier SAS
http://archimer.ifremer.fr/doc/2000/publication-1392.pdf
DOI:10.1016/S0990-7440(00)01056-1
http://archimer.ifremer.fr/doc/00000/1392/