Éditeur(s) : University of Florida Université des Antilles. Service commun de la documentation
Extrait de : 52e congrès annuel de la Société caribéenne des plantes alimentaires / 52nd annual meeting of the Caribbean food crops society (CFCS), du 10 au 16 juillet 2016. INRA, CFCS
Description : Under tropical and sub-tropical climates, a sustainable development of agriculture is challenging because of the pest pressure with favorable weather conditions. Implementation of appropriate cropping systems including growing cover crops and crop rotation plays a critical role, which can break up the food chain and life cycles of field pests. Some field trials have demonstrated that among all tested summer cover crops, sunn hemp (Crotalaria juncea L. cv. Tropic sun) can grow vigorously during the rainy summer, cover the land quickly and densely, and it can produce a large quantity of biomass in two to three months. More importantly, sunn hemp can suppress soil root-knot nematodes via releasing some nematicides through its roots and through the decomposition of plant residues. Therefore, growing cover crop â? ? sunn hemp during the crop off season and rotating with valuable vegetable crops in the growing season has become a promising cropping system under the subtropical climate. Such a result may have a potential to be implemented in Caribbean countries to improve the sustainable development of agriculture.

Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V16313
V16313

Éditeur(s) : Actes de colloques. Ifremer Brest [ACTES COLLOQ. IFREMER.]. 1986
Résumé : Bacterial density of the coelenteric fluid (CF) of some anthozoan species was determined in situ and under laboratory conditions. In all species examined bacterial density of the CF was higher in the gastral cavity than in ambient ranging from 10 super(5) up to 5 x 10 super(6) cells. ml super(-1). Incubation experiments with the CF indicate that a bacterial population within the coelenteron is efficiently controlled by the CF, favoring bacterial growth if bacterial densities are low in the CF and showing clearance activity at high bacterial densities. Feeding of pre-starved anthozoans caused a rapid response of coelenteric rod-shaped bacteria. Evidence is presented that coelenteric bacteria are digested periodically although they contribute 1% to the respiratory carbon losses of the antozoans tested. Therefore, it is more likely that the coelenteric bacterial population provide other substances which cannot be synthesized by the host.
La densité des bactéries du fluide gastrique de différents anthozoaires a été déterminée in situ et au laboratoire. Pour toutes les espèces étudiées, la densité des bactéries dans le fluide gastrique était plus élevée que dans l'eau ambiante et comprise entre 105et 106 cellules m"1. Des expériences d'incubation du fluide gastrique montrent que la population bactérienne est contrôlée efficacement par ce fluide gastrique, favorisant la croissance de bactéries lorsque la densité est faible mais révélant des activités de digestion lorsque la densité est élevée. En nourrissant des anthozoaires mis àjeun plusieurs jours, on provoque une réaction rapide des bactéries déforme bacillaire. Certaines observations montrent que les bactéries gastriques se développent et sont digérées par cycle dans le coelenteron. Néanmoins, la contribution en carbone de ces dernières, comparée aux pertes d'énergie par Sa respiration, représenterait moins de i ','-£. li est probable que cette population bactérienne fournisse des substances qui ne peuvent être synthétisées par i'hôte.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1984/acte-989.pdf
http://archimer.ifremer.fr/doc/00000/989/

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Variation of dead wood decay rates among tropical trees remains one source of uncertainty in global models of the carbon cycle. Taking advantage of a broad forest plot network surveyed for tree mortality over a 23-year period, we measured the remaining fraction of boles from 367 dead trees from 26 neotropical species widely varying in wood density (0.23–1.24 g cm-3) and tree circumference at death time (31.5–272.0 cm). We modeled decay rates within a Bayesian framework assuming a first order differential equation to model the decomposition process and tested for the effects of forest management (selective logging vs. unexploited), of mode of death (standing vs. downed) and of topographical levels (bottomlands vs. hillsides vs. hilltops) on wood decay rates. The general decay model predicts the observed remaining fraction of dead wood (R2 = 60%) with only two biological predictors: tree circumference at death time and wood specific density. Neither selective logging nor local topography had a differential effect on wood decay rates. Including the mode of death into the model revealed thatstanding dead trees decomposed faster than downed dead trees, but the gain of model accuracy remains rather marginal. Overall, these results suggest that the release of carbon from tropical dead trees to the atmosphere can be simply estimated using tree circumference at death time and wood density.
ISSN: 0029-8549

hal-01094187
https://hal-agroparistech.archives-ouvertes.fr/hal-01094187
DOI : 10.1007/s00442-010-1602-8

Éditeur(s) : Inter-research
Résumé : Mixed beds of Ophiocomina nigra and Ophiothrix fragilis (Echinodermata, Ophiuroidea) are usually predominated by O. fragilis and are reported to be stable over time. The Bay of Brest (Brittany, France) is a highly productive ecosystem where both species co-occur in the main central part. Using a geostatistical approach, we tested for changes in O. nigra and O. fragilis density and total biomass patterns between 1987 and 2011. Our results highlighted an increase in O. nigra population size and the induction of a spatial shift of the co-occurring O. fragilis. O. nigra increased similar to 5 times in density and covered almost all the study area, while its density-dependent biomass increased similar to 3 times (22 t km(-2), ash-free dry mass) between 1987 and 2011. Overall, the O. fragilis population decreased in density by similar to 30%, but its total biomass did not change over time. The current distribution pattern revealed a clear spatial exclusion of O. fragilis from the central part of the study area toward the southern part, overlapping beds of dead slipper limpet Crepidula fornicata, which were formerly considered to be the dominant suspension-feeder species in the bay. The success of O. nigra colonization is linked to its biological and functional traits, as well as deep changes in food supply over the studied period. Ecological consequences of such a large change in the benthic compartment of the bay are explored in the light of associated changes in environmental patterns.
Marine Ecology-progress Series (0171-8630) (Inter-research), 2012 , Vol. 460 , P. 79-90

Droits : 2012 Inter-Research
http://archimer.ifremer.fr/doc/00090/20136/17782.pdf
DOI:10.3354/meps09784
http://archimer.ifremer.fr/doc/00090/20136/

Éditeur(s) : HAL CCSD
Résumé : International audience
This paper shows the information criteria (IC) performances in feature selection framework. Feature selection aims to select a representative subset among a wide set of features. We apply this approach to classify an hand segmented image. The performance is tested using various feature selection schemes (SFS, SBS, SFFS and SBFS) to select the candidate subsets. The accuracy of the approach is based on a good quality of the joint probability density approximation of the combined features. They are obtained using histogram optimized thanks to the adaptive arithmetic coding principles. Our approach is tested on different reference data. The subsets quality is evaluated using correct classification rate computed on multiple classifiers. Results show stability and convergence properties of this tool and its ability to select representative subsets (in the sense that the subset of feature is a good characterization of the classes in which the data belong). Information Criteria could be used for feature selection as a good alternative to other criteria.
CISP Proceedings
Shangay, China

hal-00634749
https://hal.archives-ouvertes.fr/hal-00634749

Éditeur(s) : HAL CCSD Nordic Ecological Society
Résumé : Niche differentiation and ecological filtering are primary ecological processes that shape community assembly, but their relative importance remains poorly understood. Analyses of the distributions of functional traits can provide insight into the community structure generated by these processes. We predicted the trait distributions expected under the ecological processes of niche differentiation and environmental filtering, then tested these predictions with a dataset of 4672 trees located in nine 1-ha plots of tropical rain forest in French Guiana. Five traits related to leaf function (foliar N concentration, chlorophyll content, toughness, tissue density and specific leaf area), and three traits related to stem function (trunk sapwood density, branch sapwood density, and trunk bark thickness), as well as laminar surface area, were measured on every individual tree. There was far more evidence for environmental filtering than for niche differentiation in these forests. Furthermore, we contrasted results from species-mean and individual-level trait values. Analyses that took within-species trait variation into account were far more sensitive indicators of niche differentiation and ecological filtering. Species-mean analyses, by contrast, may underestimate the effects of ecological processes on community assembly. Environmental filtering appeared somewhat more intense on leaf traits than on stem traits, whereas niche differentiation affected neither strongly. By accounting for within-species trait variation, we were able to more properly consider the ecological interactions among individual trees and between individual trees and their environment. In so doing, our results suggest that the ecological processes of niche differentiation and environmental filtering may be more pervasive than previously believed.
ISSN: 0030-1299

hal-01032397
https://hal.archives-ouvertes.fr/hal-01032397
DOI : 10.1111/j.1600-0706.2010.19110.x

Éditeur(s) : Centre Océanologique de Bretagne
Résumé : One of the criteria for selecting a shrimp of commercial interest in French Polynesia is the acceptability of artificial diet; such a criterion has been used to test Penaeus merguiensis.Experiments have been carried out in Centre Océanologique du Pacifique in Tahiti island where the water temperature range is 25-29°C, salinity 35 ppt, pH. 8.2, and photoperiod constant.Juveniles used in this study are hatched in CNEXO-COP at Vairao.It has been found that a 50-55% protein content diet gives a better growth performance. A carbohydrate such as starch appears more suitable than glucose or glucose plus starch in isonitrogenous purified diets.A vitamin mix rich in vitamin C, choline and inositol provides better results and a mineral mix with 3% magnesium reaches optimum. The major nutritional results for this species are applied to formulation of artificial diets.With the best diet, growth performances are normal: from 2.8 g to 9.0 g in 90 days, with about 60% survival rate at alow density, 20 animals/m² under strict control. But at another scale, in 400 m² graw-out tanks, growth was rather low even with an excellent Japanese diet containing 60% protein.Therefore, P. merguiensis does not appear to be a good candidate species for aquafarming in French Polynesia. [NOT CONTROLLED OCR]
Recueil des Travaux du Centre Océanologique de Bretagne (Centre Océanologique de Bretagne), 1979 , P. 705-714

Droits : Centre Océanologique de Bretagne
http://archimer.ifremer.fr/doc/1979/publication-5272.pdf
http://archimer.ifremer.fr/doc/00000/5272/

Éditeur(s) : HAL CCSD Wiley
Résumé : [b]1.[/b] Plant functional traits, in particular specific leaf area (SLA), wood density and seed mass, are often good predictors of individual tree growth rates within communities. Individuals and species with high SLA, low wood density and small seeds tend to have faster growth rates.[br/][br/][b]2.[/b] If community-level relationships between traits and growth have general predictive value, then similar relationships should also be observed in analyses that integrate across taxa, biogeographic regions and environments. Such global consistency would imply that traits could serve as valuable proxies for the complex suite of factors that determine growth rate, and, therefore, could underpin a new generation of robust dynamic vegetation models. Alternatively, growth rates may depend more strongly on the local environment or growth–trait relationships may vary along environmental gradients.[br/][br/][b]3.[/b] We tested these alternative hypotheses using data on 27 352 juvenile trees, representing 278 species from 27 sites on all forested continents, and extensive functional trait data, 38% of which were obtained at the same sites at which growth was assessed. Data on potential evapotranspiration (PET), which summarizes the joint ecological effects of temperature and precipitation, were obtained from a global data base.[br/][br/][b]4.[/b] We estimated size-standardized relative height growth rates (SGR) for all species, then related them to functional traits and PET using mixed-effect models for the fastest growing species and for all species together.[br/][br/][b]5.[/b] Both the mean and 95th percentile SGR were more strongly associated with functional traits than with PET. PET was unrelated to SGR at the global scale. SGR increased with increasing SLA and decreased with increasing wood density and seed mass, but these traits explained only 3.1% of the variation in SGR. SGR–trait relationships were consistently weak across families and biogeographic zones, and over a range of tree statures. Thus, the most widely studied functional traits in plant ecology were poor predictors of tree growth over large scales.[br/][br/][b]6.[/b] Synthesis. We conclude that these functional traits alone may be unsuitable for predicting growth of trees over broad scales. Determining the functional traits that predict vital rates under specific environmental conditions may generate more insight than a monolithic global relationship can offer.
ISSN: 0022-0477

hal-01204226
https://hal.archives-ouvertes.fr/hal-01204226
DOI : 10.1111/1365-2745.12401
PRODINRA : 307144

Éditeur(s) : HAL CCSD Oldendorf/Luhe
Résumé : International audience
Unmanned aerial vehicles (UAVs) are being increasingly used in studies of marinefauna. Here, we tested the use of a UAV (DJI Phantom II®) to assess fine-scale variation in densitiesof 2 elasmobranchs (blacktip reef sharks Carcharhinus melanopterus and pink whiprays Himanturafai) on reef systems off Moorea (French Polynesia). We flew parallel transects designed to samplereef habitats (fringing, channel and sandflat habitats) across 2 survey blocks. Block 1 included ashark and ray provisioning site with potentially higher elasmobranch densities, whereas Block 2most likely had lower densities with no provisioning activities. Across 10 survey days in July 2014,we flew 3 transects (400 m) within each survey block (n = 60 total transect passes). As expected,densities (animals ha−1) were significantly higher in Block 1 than in Block 2, particularly where provisioningactivities occur. Differences between habitats surveyed were also found. Our study providesthe first direct estimates of shark and ray densities in coral-reef ecosystems and demonstratesthat UAVs can produce important fishery-independent data for elasmobranchs, particularly inshallow-water habitats.
ISSN: 0171-8630

hal-01416757
https://hal-univ-perp.archives-ouvertes.fr/hal-01416757
DOI : 10.3354/meps11945

Éditeur(s) : HAL CCSD
Résumé : International audience
The k-nearest neighbors (k-NN) classification rule is still an essential tool for computer vision applications, such as scene recognition. However, k-NN still features some major drawbacks, which mainly reside in the uniform voting among the nearest prototypes in the feature space. In this paper, we propose a new method that is able to learn the "relevance" of prototypes, thus classifying test data using a weighted k-NN rule. In particular, our algorithm, called Multi-class Leveraged k-nearest neighbor (MLNN), learns the prototype weights in a boosting framework, by minimizing a surrogate exponential risk over training data. We propose two main contributions for improving computational speed and accuracy. On the one hand, we implement learning in an inherently multiclass way, thus providing significant computation time reduction over one-versus-all approaches. Furthermore, the leveraging weights enable effective data selection, thus reducing the cost of k-NN search at classification time. On the other hand, we propose a kernel generalization of our approach to take into account real-valued similarities between data in the feature space, thus enabling more accurate estimation of the local class density. We tested MLNN on three datasets of natural images. Results show that MLNN significantly outperforms classic k-NN and weighted k-NN voting. Furthermore, using an adaptive Gaussian kernel provides significant performance improvement. Finally, the best results are obtained when using MLNN with an appropriate learned metric distance.
Proceedings of the 10th Asian Conference on Computer Vision, ACCV 2010, November 8-12, 2010, Queenstown, New Zealand
Queenstown, New Zealand

hal-00664606
https://hal.inria.fr/hal-00664606
https://hal.inria.fr/hal-00664606/document
https://hal.inria.fr/hal-00664606/file/mlnn_accvfinal.pdf

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : The natural 15N abundance method for estimating symbiotic biological N2-fixation was tested on legume trees from two rain forests on contrasting soils (oxisols and spodosols) in French Guiana. When possible, the significance of N2-fixing species in the plant community was evaluated in terms of density, biomass and contribution of N2-fixation to the building up of the total nitrogen mass in the leaves. Of the two sites, the rain forest on spodosols was the less favourable for application of the [delta]15N method: the available soil nitrogen was isotopically similar to fixed-N2. Hence, the results showed that a reliable estimate of N2-fixation could not be obtained. A substantial contribution of fixed-N2 to the nitrogen nutrition of legumes was found on oxisols, with an average value of 54 % Ndfa (Nitrogen derived from the atmosphere). The contribution of the N2-fixing legumes to the biomass of the stand was estimated to be 2 t ha[minus sign]1 for the leaf biomass and 136 t ha[minus sign]1 for the total above-ground plant biomass. With 7.5 % of trees in the stand able to fix N2 (462 out of 6156), N2-fixation was estimated to be 7 kg ha[minus sign]1 y[minus sign]1. These results are the first use of the [delta]15N method to estimate nitrogen input by N2-fixing legumes to a natural rain forest. The inter-site variability observed in the [delta]15N of the non-fixing plants suggested different nitrogen-cycling processes in the two soils. The [delta]15N of the non-N2-fixing plants could be related to the soil nitrogen availability and be used as an indicator of efficient or non-efficient nitrogen-cycling rain forests. The spatial variability of the [delta]15N in the plant-available soil nitrogen pool and the nitrogen balance in tropical rain forests are discussed.
ISSN: 0266-4674

hal-01032201
https://hal.archives-ouvertes.fr/hal-01032201
DOI : 10.1017/S0266467499000644

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : Gravity data and P-wave teleseismic traveltime residuals from 29 temporary broad-band stations spread over the northern margin of the Gulf of Aden (Dhofar region, Oman) were used to image lithospheric structure. We apply a linear relationship between density and velocity to provide consistent density and velocity models from mid-crust down to about 250 km depth. The accuracy of the resulting models is investigated through a series of synthetic tests. The analysis of our resulting models shows: (1) crustal heterogeneities that match the main geological features at the surface; (2) the gravity edge effect and disparity in anomaly depth locations for layers at 20 and 50 km; (3) two low-velocity anomalies along the continuation of Socotra-Hadbeen and Alula-Fartak fracture zones between 60 and 200 km depth; and (4) evidence for partial melting (3-6 per cent) within these two negative anomalies. We discuss the presence of partial melting in terms of interaction between the Sheba ridge melts and its along-axis segmentation.
ISSN: 0956-540X

hal-00456048
https://hal.archives-ouvertes.fr/hal-00456048
DOI : 10.1111/j.1365-246X.2009.04438.x

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : We examined tree-soil habitat associations in lowland forest communities at Paracou, French Guiana. We analyzed a large dataset assembling six permanent plots totaling 37.5 ha, in which extensive LIDAR-derived topographical data and soil chemical and physical data have been integrated with precise botanical determinations. Map of relative elevation from the nearest stream summarized both soil fertility and hydromorphic characteristics, with seasonally inundated bottomlands having higher soil phosphate content and base saturation, and plateaus having higher soil carbon, nitrogen and aluminum contents. We employed a statistical test of correlations between tree species density and environmental maps, by generating Monte Carlo simulations of random raster images that preserve autocorrelation of the original maps. Nearly three fourths of the 94 taxa with at least one stem per ha showed a significant correlation between tree density and relative elevation, revealing contrasted species-habitat associations in term of abundance, with seasonally inundated bottomlands (24.5% of species) and well-drained plateaus (48.9% of species). We also observed species preferences for environments with or without steep slopes (13.8% and 10.6%, respectively). We observed that closely-related species were frequently associated with different soil habitats in this region (70% of the 14 genera with congeneric species that have a significant association test) suggesting species-habitat associations have arisen multiple times in this tree community. We also tested if species with similar habitat preferences shared functional strategies. We found that seasonally inundated forest specialists tended to have smaller stature (maximum diameter) than species found on plateaus. Our results underline the importance of tree-soil habitat associations in structuring diverse communities at fine spatial scales and suggest that additional studies are needed to disentangle community assembly mechanisms related to dispersal limitation, biotic interactions and environmental filtering from species-habitat associations. Moreover, they provide a framework to generalize across tropical forest sites.
ISSN: 1932-6203

hal-01260289
https://hal.archives-ouvertes.fr/hal-01260289
PRODINRA : 342930
DOI : 10.1371/journal.pone.0141488

Éditeur(s) : EDP Sciences
Résumé : Marine Protected Areas (MPA) are often contemplated as a tool for the sustainable management of exploited resources and ecosystem conservation. This paper proposes an approach to establish a statistical diagnostic of the effects of MPAs on fish assemblages, and define corresponding ecological indicators. This requires choosing relevant variables (abundance, diversity, demographic parameters..) and appropriate statistical methods. The study was based on data from the Abore reef Reserve in New Caledonia. Two sets of methods: 1-inferential linear models (ANOVA, GLM): 2- Partial Least Squares (PLS) methods of regression, were used to test the effects of this MPA. PLS enabled us to test simultaneously within a model, density, species richness, biomass and mean size variables of fish community to retain the most sensitive and relevant ones. Habitat variability was also taken into account in these models. Species were grouped according to several criteria: 1-feeding habit; 2- taxonomy; 3-mobility; 4-adult size; 5-demographic strategy. No significant effect of the opening of the Abore reef to fishing was found for mobility. Feeding habit was the only criterion for which the results from the inferential models and PLS showed a significant effect of reserve status for all variables. Species richness, density, and to a lesser extent mean size, were sensitive to the removal of reserve status. but not biomass. Results from ANOVA and PLS regression were consistent but the latter allows a more holistic approach as it integrates all variables within a single model.
Les Aires Marines Protégées (AMP) sont de plus en plus considérées comme des mesures de gestion alternative permettant à la fois une gestion durable des ressources exploitées et la conservation des écosystèmes. Nous proposons une approche pour définir des indicateurs synthétiques et permettre un diagnostic statistique de l'effet des AMP sur les peuplements. Ce travail passe par le choix de variables pertinentes (abondance, richesse spécifique, paramètres démographiques, etc.) et de méthodes statistiques appropriées. Cette étude a été réalisée sur la réserve du récif Aboré en Nouvelle-Calédonie. Les données issues de deux campagnes scientifiques menées sur ce récif sont utilisées pour tester globalement l'effet des AMP grâce à des modèles linéaires inférentiels (ANOVA, GLM), et par des méthodes de régression PLS (Partial Least Squares). Ces dernières permettent de confronter dans un même modèle quatre variables (densité, richesse, biomasse et taille moyenne des poissons), afin de retenir les plus sensibles et les plus pertinentes pour l'évaluation de l'impact de la réserve. La variabilité de l'habitat est également prise en compte dans la modélisation. Les espèces sont regroupées selon plusieurs critères: 1- le régime alimentaire; 2- la taxonomie; 3- la mobilité; 4- des caractéristiques démographiques; 5- des caractéristiques de taille. Les espèces, quel que soit leur mobilité, n'apparaissent pas affectées par l'ouverture à la pêche du récif Aboré, qu'elles soient sédentaires ou très mobiles. Seul le critère trophique révèle un effet du changement de statut Réserve/Non Réserve pour toutes les variables, à la fois d'après les modèles inférentiels et les régressions PLS. Les résultats des modèles inférentiels et des régressions PLS montrent que la richesse spécifique et la densité sont les variables les plus sensibles à l'impact de l'ouverture à la pêche. La taille moyenne est également bien modélisée sur l'ensemble des résultats mais pas la biomasse. Les résultats d'ANOVA et de régression PLS sont cohérents mais la régression PLS permet d'intégrer toutes les variables dans un même modèle
Aquatic Living Resources (0990-7440) (EDP Sciences), 2004-04 , Vol. 17 , N. 2 , P. 139-149

Droits : EDP Sciences, IFREMER, IRD 2004
http://archimer.ifremer.fr/doc/2004/publication-398.pdf
DOI:10.1051/alr:2004022
http://archimer.ifremer.fr/doc/00000/398/

Éditeur(s) : Inter-research
Résumé : We propose a statistical approach based on multivariate analysis and general linear models to test the consequences of removal of reserve status from the Abore Reef fish assemblage of the Abore Reef reserve, New Caledonia. Consequences on fish density were examined at the level of fish assemblage, accounting for habitat. Fish counts and habitat-related information were collected before and after the removal of reserve status, both inside and outside the reserve. Species groups were constructed on the basis of additional information on behavioural characteristics and taxonomy. The impact of the removal of reserve status was assessed by using 2 habitat proxies corresponding to 2 spatial scales and by considering several criteria for grouping species. Habitat appeared to be a determining factor in explaining density variations. Significant positive effects were found for several species groups such as macrocarnivores, piscivores, herbivores, Lethrinidae and Siganidae. A counterintuitive negative effect was observed for Acanthuridae. No significant differences between the area which remained closed to fishing and the area open to fishing were found for the other species groups. The approach allows for a synoptic diagnosis of the impact of changes in reserve status at the fish assemblage level. It could be used to develop and select potential indicators for monitoring such impacts on fish assemblages in coral reef ecosystems and in other contexts.
Marine Ecology Progress Series (0171-8630) (Inter-research), 2005 , Vol. 292 , P. 271-286

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00000/10970/7574.pdf
http://archimer.ifremer.fr/doc/00000/10970/

Résumé : La banane plantain (Musa paradisiaca) est l’aliment de base de millions de personnes dans le monde et sa culture génère des revenus permanents pour un grand nombre d’agriculteurs, dans des plantations de taille petite ou moyenne. Comme dans d’autres régions tropicales, la culture du plantain en Guadeloupe et en Haïti est soumise à de fortes contraintes parasitaires aussi bien telluriques (i.e. du sol : nématodes phytoparasites et charançon du bananier) qu’aériennes (Cercosporiose noire notamment). Les moyens de lutte conventionnels reposent sur l’usage de produits de synthèse dont les effets néfastes sur l’environnement (sols, eaux, animaux) comme sur la santé humaine ne sont plus supportables. Il est donc urgent de réfléchir à des solutions agro-écologiques permettant de rétablir les équilibres biologiques, de maintenir une bonne qualité des sols et une production optimale dans les systèmes de culture plantains. C’est le but de ce travail de thèse qui couple la réalisation d’un diagnostic agro-écologique dans des parcelles paysannes, et le test d’alternatives agro-écologiques en milieu semi-contrôlé. Pour ce faire, une typologie des systèmes de culture plantains a été réalisée à l’issue d’une enquête agro-environnementale dans les deux zones d’étude. Elle a permis de sélectionner 23 parcelles en Guadeloupe et 12 en Haïti dans lesquelles un diagnostic agro-écologique a été conduit. Sur la base de ce diagnostic et de la recherche d’alternatives agro-écologiques à l’usage des produits chimiques, une expérimentation au champ a été mise en place en Guadeloupe en station de recherche, permettant le test de trois pratiques culturales innovantes pour le plantain (seules et combinées), à savoir : i) l’introduction d’une plante de service Paspalum notatum pour la gestion des adventices et la réduction de l’utilisation d’herbicides ; ii) l’apport de vermicompost pour le contrôle des nématodes phytoparasites inféodés au bananier plantain et la fertilisation de celui-ci ; iii) l’utilisation de plants sains PIF (Plants Issus de Fragments de tiges) indemnes de nématodes et de larves de charançon du bananier. La typologie des systèmes de culture plantains révèle que : i) en Guadeloupe les précédents : jachère, ananas et banane plantain sont prédominants avec un niveau d’intensification faible (apports d’intrants chimiques faibles et peu fréquents) ou élevé (apports d’intrants chimiques élevés et plus fréquents) ; ii) en Haïti, les précédents : jachère, banane plantain et manioc prédominent avec un niveau d’intensification faible ou nul (apport d’intrants inexistant). Les résultats du diagnostic agro-écologique montrent que, i) lorsque le niveau d’intensification est faible, les bananeraies plantains pérennes et le précédent-ananas permettent de maintenir une bonne qualité du sol et une bonne régulation des parasites telluriques ; ii) lorsque le niveau d’intensification est fort, les populations d’ingénieurs du sol diminuent drastiquement, alors que le cortège parasitaire tellurique augmente sans que cela n’affecte l’obtention de bons niveaux de rendement instantannés (parcelles précédées d’ananas ou d’une jachère principalement) ; iii) en absence totale de fertilisation, il résulte une diminution de l’activité biologique du sol mais aussi du rendement du plantain, exacerbé par le choix des précédents-culturaux (manioc ou banane plantain) en lien avec les contraintes pédoclimatiques et la maladie des raies noires (Cercosporiose noire) causée par Mycosphaerella fijiensis, notamment au sein des parcelles Haïtiennes ; iv) la succession plantain/plantain est la plus pénalisante vis-à-vis de la culture du plantain, car quelque soit le niveau d’intensification, le rendement reste relativement faible, en lien avec une dégradation de l’état sanitaire, comparativement aux autres précédents.
Plantain (Musa paradisiaca) is the staple food of millions of people worldwide and its cropping generates ongoing revenues for many farmers who are planting small or medium size areas. As in other tropical regions, plantain cultivation in Guadeloupe and Haiti is under heavy parasitic constraints terrestrial (plant-parasitic nematodes and banana weevil) as well as aerial (black Sigatoka in particular). Conventional means of control based on the use of synthetic products which adverse effects on the environment (soil, water, animals ...) as on human health are not bearable any more. It is thus urgent to think about agroecological solutions allowing to restore the biological balances, to maintain good soil quality and optimal plantain cropping systems.This is the ultimate goal of this thesis which couples the realization of an agroecological diagnosis in peasants’ plots, and the test of agroecological alternatives in semi-controlled conditions. To do this, a typology of plantain cropping systems was carried out from an agrienvironmental survey in the two study areas. It allowed to select 23 plots in Guadeloupe and 12 in Haiti in which an agroecological diagnosis was implemented. Based on this diagnosis and the research of agroecological alternatives to the use of chemicals, a field experiment was set up in Guadeloupe, in an experimental station allowing the test of three innovative practices for plantain cultivation (alone and combined), namely : i) the introduction of a cover-crop Paspalum notatum for weed control while reducing the use of herbicides ; ii) the input of worms’ compost to control plant-parasitic nematodes specific to plantain and to fertilize it ; iii) the use of healthy “PIF” plants (plants issued from stem fragments) free from telluric pests (nematodes and weevil’s larvaes).The typology of plantains cropping systems shows: i) in Guadeloupe the previous crops are: fallow pineapple and plantain predominate with a low level of intensification (low and infrequent chemical inputs) or high (high and frequent chemical inputs); ii) in Haiti, the previous crops are: fallow, plantain and cassava predominate with a low level or no intensification at all (no inputs). The results of the agroecological analysis show that : i) when the level of intensification is low, perennial plantain and pineapple as previous crops help maintaining a good soil quality and a good regulation of the telluric pests ; ii) when the level of intensification is strong, the soil engineers drastically reduce, while the density of telluric parasites increases without affecting good levels of instantaneous yields (plots where the previous crop is pineapple or mostly fallow) ; iii) when the fertilization is totally missing, it decreases the biological activity of the soil furthermore the plantain yields, exacerbated by the choice of the previous crop (cassava or plantain), in connection with soils and climate constraints and the black Sigatoka caused by Mycosphaerella fijiensis, especially in the Haitian plots ; iv) the crop succession plantain/plantain is the most critical regarding the plantain’s cropping, because whatever the level of intensification, the yields remain relatively low in connection with a degradation of the health state, compared to other previous crops.The driving of an experiment in a research station shows that on the scale of one year, the three tested innovative practices allow maintaining a good soils quality. Healthy plants "PIF" have a better health state (absence of plant parasitic nematodes in the roots) which helps a significant increase of the yields. Cover-crop P. notatum helps the weeds and the soil pests control and favors the improvement of soil biological activity and plantain yields. Worms’ compost contributes to the maintenance of a better soils quality while allowing the regulation of the populations of plant-parasitic nematodes of the plantains.

http://www.theses.fr/2014AGUY0758/document

Éditeur(s) : HAL CCSD Wiley
Résumé : Tank bromeliads form a conspicuous, yet neglected freshwater habitat in Neotropical forests. Recent studies driven by interests in medical entomology, fundamental aspects of bromeliad ecology and experimental research on food webs have, however, prompted increasing interest in bromeliad aquatic ecosystems. As yet, there is nothing in the literature about the life histories and environmental drivers of invertebrate population dynamics in tank bromeliads. Based on fortnightly samples taken over oneyear, size frequency plots and individual dry masses allowed us to establish the life cycles and growth rates of the dominant aquatic invertebrates in a common bromeliad species of French Guiana. Linear mixed-effect models and Mantel tests were used to predict changes in density, biomass, and growth rates in relation to temperature, rainfall, humidity and detrital resources. Annual variations in invertebrate densities and biomasses could be described according to three types of distribution: unimodal, bimodal or almost constant. Despite seasonal variations, precipitation, temperature, relative humidity and detritus concentration accounted significantly for changes in density and biomass, but we found no significant responses in growth rates of most invertebrate species. Species rather displayed non-seasonal life cycles with overlapping cohorts throughout the year. There was also a trend for delayed abundance peaks among congeneric species sharing similar functional traits, suggesting temporal partitioning of available resources. Beyond novel knowledge, quantitative information on life histories is important to predict food-web dynamics under the influence of external forcing and self-organisation. Our results suggest that changes in species distribution that will affect population dynamics through biotic interactions in space and/or time could have greater effects on food webs and ecosystem functioning than changes in environmental factors per se.
ISSN: 0046-5070

hal-01607779
https://hal.archives-ouvertes.fr/hal-01607779
DOI : 10.1111/fwb.12862
PRODINRA : 407311

Éditeur(s) : HAL CCSD
Résumé : Joint inversions are now commonly used in Earth Sciences. They have been developed to better understand Earth structure since they provide more constraints on the inverted parameters. We propose a new process to simultaneously invert several data sets in order to better image 3-D crustal and upper mantle structures. Our inversion uses 3 kind of data which present a good complementarity : (1) P receiver functions to provide Moho depth variations, (2) teleseismic delay times of P waves to retrieve velocity anomalies in the crust and upper mantle, (3) gravity anomalies to image density variations at lithospheric scale. In our scheme, receiver functions are first inverted. The resulting Moho depths are then interpolated and incorporated as a priori information into the joint inversion of teleseismic delay times and gravity anomalies process. In our new approach, we perform a model space search for Moho variations, P-velocity and density structure to find acceptable fit to the three data sets. In order to preferentially sample the good data fit region, we chose the Neighborhood algorithm of Sambridge to optimistically survey the model space. We model the delay times with a 3-D raytracing using velocity nodes evenly spaced and linked with density nodes via a linear relationship. This relationship can evolve through depth, simulating its pressure dependance. We test our scheme on synthetic examples, and apply the method in a continental rifting region where deformation processes are complex and badly known. This joint inversion thus provides more constraints on the inverted parameters, and allows us to better image crust - mantle interactions in the case of the Hangai dome (Central Mongolia). Indeed, in this area, we expect an asthenospheric upwelling to dynamically support the topography, but we image a density - velocity anomaly in the lower crust. The effects on topography and the origin (composition vs. thermal) of this anomaly are still under debate.
Les inversions conjointes sont maintenant communément utilisées en Sciences de la Terre. Elles ont été développées afin d'améliorer notre connaissance et compréhension de la structure interne de la Terre puisqu'elles apportent de plus en plus de contraintes sur les paramètres inversés. Dans cette thèse, nous proposons un nouveau processus d'inversion conjointe qui prend en compte trois paramètres différents et qui mène à l'obtention d'un modèle lithosphérique tridimensionnel. Notre méthode utilise trois types de données gravimétriques et sismologiques qui présentent une bonne complémentarité : (1) Les fonctions récepteur P afin d'obtenir les variations de profondeur du Moho, (2) les délais de temps d'arrivées P des téléséismes pour retrouver les anomalies de vitesse dans la croûte et le manteau supérieur, (3) les anomalies gravimétriques qui donnent accès aux variations de densité à l'échelle lithosphérique. Dans le schéma d'inversion proposé, nous inversons d'abord les fonctions récepteur. Les variations de profondeur du Moho qui en résultent sont alors interpolées puis incorporées comme information a priori dans le processus d'inversion conjointe gravimétrie - tomographie télésismique. Que ce soit pour les fonctions récepteur ou pour la partie conjointe, notre méthode d'inversion se base sur un algorithme de recherche afin de trouver la structure qui minimise l'écart aux trois types de données. Nous avons opté pour l'algorithme de voisinage qui présente l'avantage de concentrer sa recherche dans les régions qui minimisent l'écart aux données sans toutefois abandonner les autres régions afin de limiter les risques de convergence vers un minimum local. Nous utilisons un modèle 3-D constitué de noeuds de vitesse afin de modéliser les délais de temps. Ces noeuds de vitesse sont liés aux noeuds de densité grâce à une relation linéaire entre vitesse et densité. Cette relation peut évoluer avec la profondeur de manière à simuler les effets dus aux variations de pression. Nous avons réalisé plusieurs tests synthétiques afin d'évaluer le comportement de notre nouvelle méthode. Ils ont permis de montrer que les variations du Moho ainsi que les anomalies de vitesse et densité sont bien retrouvées. Ils ont également montré l'importance de la prise en compte de ces trois types de données dans un même schéma d'inversion, notamment en ce qui concerne la faculté de discerner les variations d'interfaces des anomalies volumiques. Nous avons ensuite appliqué la méthode dans une région continentale en phase de rifting où les processus de déformation sont complexes et mal connus. Notre nouvelle méthode a apporté davantage de contraintes sur les paramètres inversés et a permis d'obtenir un modèle correctement résolu de la croûte et du manteau supérieur sous le dôme de Hangai (Mongolie Centrale). Une anomalie asthénosphérique sous le dôme est souvent invoquée pour expliquer sa topographie élevée mais c'est une anomalie (en vitesse et densité) crustale (croûte inférieure) qui s'exprime dans nos modèles. Ses effets sur la topographie et son origine (compositionnelle et/ou thermique) sont encore débattus et nécessiteraient des études plus poussées (paramétriques, VP =VS, ...).
https://tel.archives-ouvertes.fr/tel-00783524

tel-00783524
https://tel.archives-ouvertes.fr/tel-00783524
https://tel.archives-ouvertes.fr/tel-00783524/document
https://tel.archives-ouvertes.fr/tel-00783524/file/Basuyau2011.pdf

Éditeur(s) : HAL CCSD Geological Society of America
Résumé : International audience
Integrated Ocean Drilling Program Expedition 313 continuously cored uppermost Eocene to Miocene sequences on the New Jersey shallow shelf (Sites M27, M28, and M29). Previously, 15 Miocene (ca. 23-13 Ma) seismic sequence boundaries were recognized on several generations of multichannel seismic profi les using criteria of onlap, downlap, erosional truncation, and toplap. We independently recognize sequence boundaries in the cores and logs based on an integrated study of core surfaces, lithostratigraphy and process sedimentology (grain size, mineralogy, facies, and paleoenvironments), facies successions, stacking patterns, benthic foraminiferal water depths, downhole logs, core gamma logs, and chronostratigraphic ages. We use a velocitydepth function to predict the depths of seismic sequence boundaries that were tested by comparison with major core surfaces, downhole and core logs, and synthetic seismograms. Using sonic velocity (core and downhole), core density, and synthetic seismograms, we show that sequence boundaries correspond with acoustic impedance contrasts, although other stratal surfaces (e.g., maximum fl ooding and transgressive surfaces) also produce refl ections. Core data are suffi cient to link seismic sequence boundaries to impedance contrasts in 9 of 12 instances at Site M27, 6 of 11 instances at Site M28, and 8 of 14 instances at Site M29. Oligocene sequences have minimal lithologic and seismic expression due to deep-water locations on clinoform bottomsets. Miocene sequences (ca. 23-13 Ma) were sampled across several unconformity clinothems (prograding units) on topset, foreset, and bottomset locations. Excellent recovery allows core-seismic integration that confi rms the hypothesis that unconformities are a primary source of impedance contrasts. Our core-seismic-log correlations predict that key seismic surfaces observed in other sub surface investigations without core and/or well logs are stratal surfaces with sequence stratigraphic signifi cance.
EISSN: 1553-040X

insu-00946235
https://hal-insu.archives-ouvertes.fr/insu-00946235
DOI : 10.1130/GES00858.1

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
We conducted a survey along three belt transects located at increasing distances from the coast to determine whether a non-random arboreal ant assemblage, such as an ant mosaic, exists in the rainforest on the Masoala Peninsula, Madagascar. In most tropical rainforests, very populous colonies of territorially dominant arboreal ant species defend absolute territories distributed in a mosaic pattern. Among the 29 ant species recorded, only nine had colonies large enough to be considered potentially territorially dominant; the remaining species had smaller colonies and were considered non-dominant. Nevertheless, the null-model analyses used to examine the spatial structure of their assemblages did not reveal the existence of an ant mosaic. Inland, up to 44% of the trees were devoid of dominant arboreal ants, something not reported in other studies. While two Crematogaster species were not associated with one another, Brachymyrmex cordemoyi was positively associated with Technomyrmex albipes, which is considered an invasive species-a non-indigenous species that has an adverse ecological effect on the habitats it invades. The latter two species and Crematogaster ranavalonae were mutually exclusive. On the other hand, all of the trees in the coastal transect and at least 4 km of coast were occupied by T. albipes, and were interconnected by columns of workers. Technomyrmex albipes workers collected from different trees did not attack each other during confrontation tests, indicating that this species has formed a supercolony along the coast. Yet interspecific aggressiveness did occur between T. albipes and Crematogaster ranavalonae, a native species which is likely territorially dominant based on our intraspecific confrontation tests. These results suggest that the Masoala rainforest is threatened by a potential invasion by T. albipes, and that the penetration of this species further inland might be facilitated by the low density of native, territorially dominant arboreal ants normally able to limit its progression.
ISSN: 1932-6203

hal-00817444
https://hal.archives-ouvertes.fr/hal-00817444
https://hal.archives-ouvertes.fr/hal-00817444/document
https://hal.archives-ouvertes.fr/hal-00817444/file/Dejean2010_Spatial.pdf
DOI : 10.1371/journal.pone.0009319