Éditeur(s) : HAL CCSD Royal Society, The
Résumé : There is broad consensus that the diversity of functional traits within species assemblages drives several ecological processes. It is also widely recognized that rare species are the first to become extinct following human-induced disturbances. Surprisingly, however, the functional importance of rare species is still poorly understood, particularly in tropical species-rich assemblages where the majority of species are rare, and the rate of species extinction can be high. Here, we investigated the consequences of local and regional extinctions on the functional structure of species assemblages. We used three extensive datasets (stream fish from the Brazilian Amazon, rainforest trees from French Guiana, and birds from the Australian Wet Tropics) and built an integrative measure of species rarity versus commonness, combining local abundance, geographical range, and habitat breadth. Using different scenarios of species loss, we found a disproportionate impact of rare species extinction for the three groups, with significant reductions in levels of functional richness, specialization, and originality of assemblages, which may severely undermine the integrity of ecological processes. The whole breadth of functional abilities within species assemblages, which is disproportionately supported by rare species, is certainly critical in maintaining ecosystems particularly under the ongoing rapid environmental transitions.
ISSN: 0962-8452

hal-01532639
https://hal.archives-ouvertes.fr/hal-01532639
DOI : 10.1098/rspb.2016.0084
PRODINRA : 384617

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Coral reefs are among the most species-rich and threatened ecosystems on Earth, yet the extent to which human stressors determine species occurrences, compared with biogeography or environmental conditions, remains largely unknown. With ever-increasing human-mediated disturbances on these ecosystems, an important question is not only how many species can inhabit local communities, but also which biological traits determine species that can persist (or not) above particular disturbance thresholds. Here we show that human pressure and seasonal climate variability are disproportionately and negatively associated with the occurrence of large-bodied and geographically small-ranging fishes within local coral reef communities. These species are 67% less likely to occur where human impact and temperature seasonality exceed critical thresholds, such as in the marine biodiversity hotspot: the Coral Triangle. Our results identify the most sensitive species and critical thresholds of human and climatic stressors, providing opportunity for targeted conservation intervention to prevent local extinctions.
ISSN: 2041-1723

hal-01282870
https://hal-univ-perp.archives-ouvertes.fr/hal-01282870
https://hal-univ-perp.archives-ouvertes.fr/hal-01282870/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01282870/file/ncomms10491.pdf
DOI : 10.1038/ncomms10491

Éditeur(s) : HAL CCSD Wiley
Résumé :  
Positive aboveground biomass trends have been reported from old-growth forests across the Amazon basin and hypothesized to reflect a large-scale response to exterior forcing. The result could, however, be an artefact due to a sampling bias induced by the nature of forest growth dynamics. Here, we characterize statistically the disturbance process in Amazon old-growth forests as recorded in 135 forest plots of the RAINFOR network up to 2006, and other independent research programmes, and explore the consequences of sampling artefacts using a data-based stochastic simulator. Over the observed range of annual aboveground biomass losses, standard statistical tests show that the distribution of biomass losses through mortality follow an exponential or near-identical Weibull probability distribution and not a power law as assumed by others. The simulator was parameterized using both an exponential disturbance probability distribution as well as a mixed exponential-power law distribution to account for potential large-scale blowdown events. In both cases, sampling biases turn out to be too small to explain the gains detected by the extended RAINFOR plot network. This result lends further support to the notion that currently observed biomass gains for intact forests across the Amazon are actually occurring over large scales at the current time, presumably as a response to climate change.
ISSN: 1354-1013

hal-01032162
https://hal.archives-ouvertes.fr/hal-01032162
DOI : 10.1111/j.1365-2486.2009.01891.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We present a new set of brittle microtectonic measurements carried out in the Pliocene and Quaternary rocks outcropping in several key sectors of the western Betic and Rif orogen, the so-called Gibraltar orogenic arc. This data set, along with available earthquake focal mechanisms and borehole breakouts, allowed us to compile the Pliocene and Quaternary stress map of this area. This map provides new constraints for tectonic models and the present-day tectonic activity of the proposed active eastward subduction of oceanic lithosphere beneath the Gibraltar Arc and roll-back. The horizontal maximum compressive stress (S-Hmax) is NW-SE in the Betic Orogen and N-S/NNW-SSE in the southern Rif Cordillera. There is a significant consistency between S-Hmax and the displacement field deduced from GPS measurements with respect to the African plate: both appear to reflect the NW-SE convergence between the African and the European plates that is perturbed in the Rif. We propose that part of the eastern Rif behaves as a quasi-rigid block welded to the stable African plate. This block is bounded by important faults that localized most of the deformation disturbing the stress and surface displacement field. Pliocene to Quaternary N-S to NW-SE Africa-Europe plate convergence seem to be associated to the reorganization of the remnant Early Miocene subduction system in a continental-continental collision framework. Three-dimensional reconstruction of available seismic tomography plotted against the intermediate seismicity shows that only part of the old subduction system, whose orientation ranges from N20 degrees E to N100 degrees E, remains active: the portion ranging from N30 degrees E to N40 degrees E, orthogonal to the regional convergence. (C) 2011 Elsevier Ltd. All rights reserved.
ISSN: 0264-3707

hal-00671033
https://hal.archives-ouvertes.fr/hal-00671033
DOI : 10.1016/j.jog.2010.12.003

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
ISSN: 1387-3547

hal-01093626
https://hal-agroparistech.archives-ouvertes.fr/hal-01093626
DOI : 10.1007/s10530-010-9714-y

Éditeur(s) : HAL CCSD Seismological Society of America
Résumé : International audience
We present an improvement of the maximum intersection (MAXI) method in which absolute earthquake location is defined by the maximum intersection number of hyperbolic equal differential time (EDT) volumes (one EDT volume being described as all grid nodes satisfying the arrival‐time differences between two stations, ± a tolerance value known as TERR). This 3D technique is well adapted to a strongly heterogeneous environment, avoids the depth versus origin‐time trade‐off (even using P arrivals alone), and objectively filters possible erroneous arrival times. Improvements consist of introducing an iterative multiscale approach on the TERR parameter and conducting a hierarchy of grid discretization to refine the preliminary solution (multigrid algorithm). The outlier cleaning process is strengthened by conducting statistical analyses based on the number of EDT volume intersections per station, rather than on travel‐time residues. Processing two series of synthetic arrival times computed in the 3D seismological configuration of the southernmost Ryukyu subduction zone, offshore Taiwan, allows us to (1) confirm MAXI robustness, even when arrival times are highly disturbed or azimuthal coverage largely reduced, and (2) show that MAXI, by limiting trade‐offs between origin time and depth and between epicentral position and depth, is less affected by a wrong velocity model than a technique that minimizes travel‐time residues. To conclude, we apply the MAXI method to locate earthquakes recorded by the combined Central Weather Bureau of Taiwan (CWB) and the Japanese Meteorological Agency (JMA) networks (1991-2008) within a georealistic a priori 3D P‐velocity model. Hypocenter determinations are selected based on MAXI confidence factors, and earthquake clustering along well‐known tectonic features witnesses hypocenter determination accuracy.
ISSN: 0037-1106

hal-00725227
https://hal.archives-ouvertes.fr/hal-00725227
DOI : 10.1785/0120100311

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Well-designed and effectively managed networks of marine reserves can be effective tools for both fisheries management and biodiversity conservation. Connectivity, the demographic linking of local populations through the dispersal of individuals as larvae, juveniles or adults, is a key ecological factor to consider in marine reserve design, since it has important implications for the persistence of metapopulations and their recovery from disturbance. For marine reserves to protect biodiversity and enhance populations of species in fished areas, they must be able to sustain focal species (particularly fishery species) within their boundaries, and be spaced such that they can function as mutually replenishing networks whilst providing recruitment subsidies to fished areas. Thus the configuration (size, spacing and location) of individual reserves within a network should be informed by larval dispersal and movement patterns of the species for which protection is required. In the past, empirical data regarding larval dispersal and movement patterns of adults and juveniles of many tropical marine species have been unavailable or inaccessible to practitioners responsible for marine reserve design. Recent empirical studies using new technologies have also provided fresh insights into movement patterns of many species and redefined our understanding of connectivity among populations through larval dispersal. Our review of movement patterns of 34 families (210 species) of coral reef fishes demonstrates that movement patterns (home ranges, ontogenetic shifts and spawning migrations) vary among and within species, and are influenced by a range of factors (e.g. size, sex, behaviour, density, habitat characteristics, season, tide and time of day). Some species move <0.1–0.5 km (e.g. damselfishes, butterflyfishes and angelfishes), <0.5–3 km (e.g. most parrotfishes, goatfishes and surgeonfishes) or 3–10 km (e.g. large parrotfishes and wrasses), while others move tens to hundreds (e.g. some groupers, emperors, snappers and jacks) or thousands of kilometres (e.g. some sharks and tuna). Larval dispersal distances tend to be <5–15 km, and self-recruitment is common. Synthesising this information allows us, for the first time, to provide species, specific advice on the size, spacing and location of marine reserves in tropical marine ecosystems to maximise benefits for conservation and fisheries management for a range of taxa. We recommend that: (i) marine reserves should be more than twice the size of the home range of focal species (in all directions), thus marine reserves of various sizes will be required depending on which species require protection, how far they move, and if other effective protection is in place outside reserves; (ii) reserve spacing should be <15 km, with smaller reserves spaced more closely; and (iii) marine reserves should include habitats that are critical to the life history of focal species (e.g. home ranges, nursery grounds, migration corridors and spawning aggregations), and be located to accommodate movement patterns among these. We also provide practical advice for practitioners on how to use this information to design, evaluate and monitor the effectiveness of marine reserve networks within broader ecological, socioeconomic and management contexts.
ISSN: 1464-7931

Droits : http://creativecommons.org/licenses/by-nc-nd/
hal-01334353
https://hal-univ-perp.archives-ouvertes.fr/hal-01334353
https://hal-univ-perp.archives-ouvertes.fr/hal-01334353/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01334353/file/Green_et_al-2015-Biological_Reviews.pdf
DOI : 10.1111/brv.12155

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : International audience
Mass bleaching events resulting in coral mortality are among the greatest threats to coral reefs, and are projected to increase in frequency and intensity with global warming. Achieving a better understanding of the consistency of the response of coral assemblages to thermal stress, both spatially and temporally, is essential to determine which reefs are more able to tolerate climate change. We compared variations in spatial and taxonomic patterns between two bleaching events at the scale of an island (Moorea Island, French Polynesia). Despite similar thermal stress and light conditions, bleaching intensity was significantly lower in 2007 (approximately 37 % of colonies showed signs of bleaching) than in 2002, when 55 % of the colonies bleached. Variations in the spatial patterns of bleaching intensity were consistent between the two events. Among nine sampling stations at three locations and three depths, the stations at which the bleaching response was lowest in 2002 were those that showed the lowest levels of bleaching in 2007. The taxonomic patterns of susceptibility to bleaching were also consistent between the two events. These findings have important implications for conservation because they indicate that corals are capable of acclimatization and/or adaptation and that, even at small spatial scales, some areas are consistently more susceptible to bleaching than others.
ISSN: 0167-6369

hal-00905944
https://hal.archives-ouvertes.fr/hal-00905944
DOI : 10.1007/s10661-012-2923-3

Éditeur(s) : HAL CCSD eLife Sciences Publication
Résumé : When 2 Mha of Amazonian forests are disturbed by selective logging each year, more than 90 Tg of carbon (C) is emitted to the atmosphere. Emissions are then counterbalanced by forest regrowth. With an original modelling approach, calibrated on a network of 133 permanent forest plots (175 ha total) across Amazonia, we link regional differences in climate, soil and initial biomass with survivors' and recruits' C fluxes to provide Amazon-wide predictions of post-logging C recovery. We show that net aboveground C recovery over 10 years is higher in the Guiana Shield and in the west (21 +/- 3 Mg C ha(-1)) than in the south (12 +/- 3 Mg C ha(-1)) where environmental stress is high (low rainfall, high seasonality). We highlight the key role of survivors in the forest regrowth and elaborate a comprehensive map of post-disturbance C recovery potential in Amazonia.
ISSN: 2050-084X

hal-01606806
https://hal.archives-ouvertes.fr/hal-01606806
DOI : 10.7554/eLife.21394
PRODINRA : 389858

Éditeur(s) : HAL CCSD American Society for Microbiology
Résumé : International audience
Under physiological conditions, the liver sinusoidal endothelial cells (LSECs) mediate hepatic immune tolerance toward self or foreign antigens through constitutive expression of anti-inflammatory mediators. However, upon viral infection or Toll-like receptor 2 (TLR2) activation, LSECs can achieve proinflammatory functions, but their role in hepatic inflammation during acute viral hepatitis is unknown. Using the highly virulent mouse hepatitis virus type 3 (MHV3) and the attenuated variants 51.6-MHV3 and YAC-MHV3, exhibiting lower tropism for LSECs, we investigated in vivo and in vitro the consequence of LSEC infection on their proinflammatory profiles and the aggravation of acute hepatitis process. In vivo infection with virulent MHV3, in comparison to attenuated strains, resulted in fulminant hepatitis associated with higher hepatic viral load, tissue necrosis, and levels of inflammatory mediators and earlier recruitment of inflammatory cells. Such hepatic inflammatory disorders correlated with disturbed production of interleukin-10 (IL-10) and vascular factors by LSECs. We next showed in vitro that infection of LSECs by the virulent MHV3 strain altered their production of anti-inflammatory cytokines and promoted higher release of proinflammatory and procoagulant factors and earlier cell damage than infection by attenuated strains. This higher replication and proinflammatory activation in LSECs by the virulent MHV3 strain was associated with a specific activation of TLR2 signaling by the virus. We provide evidence that TLR2 activation of LSCEs by MHV3 is an aggravating factor of hepatic inflammation and correlates with the severity of hepatitis. Taken together, these results indicate that preservation of the immunotolerant properties of LSECs during acute viral hepatitis is imperative in order to limit hepatic inflammation and damage. IMPORTANCE Viral hepatitis B and C infections are serious health problems affecting over 350 million and 170 million people worldwide, respectively. It has been suggested that a balance between protection and liver damage mediated by the host's immune response during the acute phase of infection would be determinant in hepatitis outcome. Thus, it appears crucial to identify the factors that predispose in exacerbating liver inflammation to limit hepatocyte injury. Liver sinusoidal endothelial cells (LSECs) can express both anti- and proinflammatory functions, but their role in acute viral hepatitis has never been investigated. Using mouse hepatitis virus (MHV) infections as animal models of viral hepatitis, we report for the first time that in vitro and in vivo infection of LSECs by the pathogenic MHV3 serotype leads to a reversion of their intrinsic anti-inflammatory phenotype toward a proinflammatory profile as well to as disorders in vascular factors, correlating with the severity of hepatitis. These results highlight a new virus-promoted mechanism of exacerbation of liver inflammatory response during acute hepatitis.
ISSN: 0022-538X

hal-01390974
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01390974
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01390974/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01390974/file/Mouse%20Hepatitis%20Virus%20Infection_accepted.pdf
DOI : 10.1128/JVI.01069-16

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
The present study tested different sounds that could disturb eagle rays (Aetobatus ocellatus) during their foraging activities at Moorea, French Polynesia. Results showed that artificial white sound and single-frequency tones (40 Hz, 600 Hz or 1 kHz) did not have an effect on rays (at least 90% of rays continued to forage over sand), while playbacks of boat motor sound significantly disturbed rays during foraging activity (60% exhibited an escape behaviour). Overall, our study highlighted the negative effect of boat noises on the foraging activity of eagle rays. These noises produced by boat traffic could, however, have some positive effects for marine aquaculture if they could be used as a deterrent to repel the eagle rays, main predators of the pearl oysters.
Notre étude teste différents types de sons qui pourraient perturber les raies-aigles (Aetobatus ocellatus) pendant leur prise de nourriture dans le lagon de Moorea, en Polynésie française. Les résultats montrent que le bruit artificiel blanc ou des fréquences uniques (40 Hz, 600 Hz ou 1 kHz) n’ont aucun effet sur les raies (au moins 90 % des raies continuent de se nourrir dans le sable), tandis que l’enregistrement d’un moteur de bateau les perturbe significativement dans cette activité (60 % des individus ont un comportement de fuite). Notre étude met ainsi en évidence l’effet négatif des bruits anthropogéniques sur les activités de nourrissage des raies-aigles. Ces bruits produits par les bateaux pourraient néanmoins avoir un effet positif pour l’aquaculture marine s’ils pouvaient être utilisés comme répulsifs des raies, principaux prédateurs de l’huître perlière.
ISSN: 1631-0691

Droits : http://creativecommons.org/licenses/by-nc-nd/
hal-01297683
https://hal-univ-perp.archives-ouvertes.fr/hal-01297683
https://hal-univ-perp.archives-ouvertes.fr/hal-01297683/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01297683/file/1-s2.0-S1631069116000020-main.pdf
DOI : 10.1016/j.crvi.2016.01.001

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: In a malaria-endemic area the distribution of patients is neither constant in time nor homogeneous in space. The WHO recommends the stratification of malaria risk on a fine geographical scale. In the village of Cacao in French Guiana, the study of the spatial and temporal distribution of malaria cases, during an epidemic, allowed a better understanding of the environmental factors promoting malaria transmission. METHODS: A dynamic cohort of 839 persons living in 176 households (only people residing permanently in the village) was constituted between January 1st, 2002 and December 31st, 2007.The information about the number of inhabitants per household, the number of confirmed cases of Plasmodium vivax and house GPS coordinates were collected to search for spatial or temporal clustering using Kurlldorff's statistical method. RESULTS: Of the 839 persons living permanently in the village of Cacao, 359 persons presented at least one vivax malaria episode between 2002 and 2007. Five temporal clusters and four spatial clusters were identified during the study period. In all temporal clusters, April was included. Two spatial clusters were localized at the north of the village near the Comté River and two others localized close to orchards. CONCLUSION: The spatial heterogeneity of malaria in the village may have been influenced by environmental disturbances due to local agricultural policies: deforestation, cultures of fresh produce, or drainage of water for agriculture. This study allowed generating behavioural, entomological, or environmental hypotheses that could be useful to improve prevention campaigns.
ISSN: 1475-2875

inserm-00849010
http://www.hal.inserm.fr/inserm-00849010
http://www.hal.inserm.fr/inserm-00849010/document
http://www.hal.inserm.fr/inserm-00849010/file/2013_Basurko_-_Deforestation_agriculture_and_farm_jobs_a_good_recipe_for_Plasmodium_vivax_in_French_Guiana.pdf
DOI : 10.1186/1475-2875-12-90

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
AimEcological connectivity is currently considered to be essential to enhance biodiversity conservation efforts and benefit adjacent areas. We evaluate the spatial structure of vulnerable marine benthic invertebrate populations based on connectivity to improve the placement of marine protected areas.LocationGulf of Lions, NW Mediterranean Sea.MethodsWe used a spatially explicit metapopulation model to explore how larval dispersal affects marine benthic invertebrate dynamics at local and regional scales. Minimum recruitment success (the proportion of larvae that settle in a site and survive between spawning and first reproduction, which is required to ensure species persistence) is proposed as a measure of vulnerability. Three contrasting simulations were constructed: closed versus connected populations, habitat loss versus recruitment failure disturbances and varying patterns of oceanographic connectivity. The rescue factor (the ratio of minimum recruitment success in connected and closed populations) quantified the decrease in vulnerability because of oceanographic connectivity.ResultsIn the Gulf of Lions, connectivity reduced population vulnerability by a rescue factor of 5.3. The minimum recruitment success for regional persistence decreased from 3% to 0.2% when species' life expectancies increased from 2 to 50 years. Connectivity enabled the spread of individuals over the entire region, but there were higher densities in sink sites, where low retention rates do not allow for local persistence (western tip of the gulf). Source sites, defined as those sites bringing metapopulation resistance to recruitment failure and stresses from habitat loss, were located in the centre of the gulf.Main conclusionsConnectivity drives the spatial structure of population density distribution and population vulnerability in the absence of any other structuring factor. In the Gulf of Lions, marine protected areas are located in population sinks; however; if protection measures were taken in the central part, populations would benefit throughout the region via the rescue effect.
ISSN: 1366-9516

hal-01341743
https://hal-univ-perp.archives-ouvertes.fr/hal-01341743
DOI : 10.1111/ddi.12254

Éditeur(s) : Public Library Science
Résumé : Changes in phenology, the timing of seasonal activities, are among the most frequently observed responses to environmental disturbances and in marine species are known to occur in response to climate changes that directly affects ocean temperature, biogeochemical composition and sea level. We examined nesting seasonality data from long-term studies at 8 green turtle (Chelonia mydas) rookeries that include 21 specific nesting sites in the South-West Indian Ocean (SWIO). We demonstrated that temperature drives patterns of nesting seasonality at the regional scale. We found a significant correlation between mean annual Sea Surface Temperature (SST) and dates of peak nesting with rookeries exposed to higher SST having a delayed nesting peak. This supports the hypothesis that temperature is the main factor determining peak nesting dates. We also demonstrated a spatial synchrony in nesting activity amongst multiple rookeries in the northern part of the SWIO (Aldabra, Glorieuses, Mohéli, Mayotte) but not with the eastern and southern rookeries (Europa, Tromelin), differences which could be attributed to females with sharply different adult foraging conditions. However, we did not detect a temporal trend in the nesting peak date over the study period or an inter-annual relation between nesting peak date and SST. The findings of our study provide a better understanding of the processes that drive marine species phenology. The findings will also help to predict their ability to cope with climate change and other environmental perturbations. Despite demonstrating this spatial shift in nesting phenology, no trend in the alteration of nesting dates over more than 20 years was found.
Plos One (1932-6203) (Public Library Science), 2012-10 , Vol. 7 , N. 10 , P. 1-13

Droits : 2012 Dalleau et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
http://archimer.ifremer.fr/doc/00098/20940/18558.pdf
DOI:10.1371/journal.pone.0046920
http://archimer.ifremer.fr/doc/00098/20940/

Éditeur(s) : HAL CCSD Elsevier
Résumé : Understanding the pattern in spatial distribution of soil microbial processes is critical to understand the environmental factors that regulate them as well as to scale up these processes to ecosystem. Soil samples from a I ha tropical rainforest plot (Paracou, French Guiana) were analyzed according a nested sampling approach using different separation distances ranging from 0.4 to 40 m. The variability of substrate induced respiration (SIR) and of denitrification enzyme activity (DEA) was characterized in relation to various soil properties (total C and N contents, NIRS related index of soil organic matter quality, SOMQ and index of tree influence potential, IP). The variability of SIR and DEA was higher than that of environmental properties. The patterns of accumulated variance as a function of distance varied among the soil properties. The variability of SIR and DEA mainly occurred at small (1 m) scale (and at the 10-40 m-scales for SIR), probably reflecting the quality of litter input that results of the influence of local assemblage of different tree species, though changes in the soil N and C contents. Indeed, total soil C and N contents explained the microbial properties at every scale. Coefficients of codispersion showed that neither SOMQ nor IP did correlate with SIR and DEA, and confirmed that total C and N contents explained microbial properties in a scale dependent and complex manner. Such spatial dependency underlines the importance of soil heterogeneity in this tropical forest with implications for sampling strategies when studying the microbial processes and their response to disturbances. (C) 2012 Elsevier B.V. All rights reserved.
ISSN: 0016-7061

hal-01032409
https://hal.archives-ouvertes.fr/hal-01032409
DOI : 10.1016/j.geoderma.2012.12.009

Éditeur(s) : HAL CCSD
Résumé : The trophic endosymbiosis interaction between a cnidarian host and its photosynthetic dinoflagellatessymbionts form the basis of coral reef ecosystems. Cnidarians host their symbionts in gastrodermis cells, in a phagocytosis-derived vacuole. Establishment and maintenance of the symbiotic interaction depend on an intimate molecular communication between the two partners. However, environmental and/or anthropogenic disturbances can lead to the breakdown of the symbiotic association, which is responsible for the worldwide decline of coral reefs. The main objectives of my research project are to improve the knowledge regarding symbiosis maintenance and disruption mechanisms, but also to define the molecular key players involved at the symbiotic interface in the sea anemone, Anemonia viridis. First, we have described the cellular mechanisms involved in the different types of symbiosis breackdown. Meanwhile, the characterization of npc1 and npc2 genes (involved in endosomal sterol transport), showed a duplication and a sub-functionalization of the npc2d gene. Both NPC1 and NPC2 proteins are expressed around symbionts. We therefore suggest that the duplicated protein NPC2-d is a biomarker of symbiosis health and that NPC1 protein is a marker of the perisymbiotic membrane. We then developed a protocol to characterize the proteome of the symbiotic interface between the two symbiotic partners. The newly-identified symbiotic key players will increase the general knowledge on the symbiotic interaction and its regulation during both stable and bleaching conditions.
L’endosymbiose trophique établie entre un hôte Cnidaire et ses symbiotes Dinoflagellés photosynthétiques est à l’origine du succès évolutif des écosystèmes coralliens. Les symbiotes sont internalisés par un mécanisme de phagocytose et maintenus dans les cellules du gastroderme de l'hôte. La symbiose est régie par un dialogue moléculaire intime entre les deux partenaires, interrompu lors de perturbations environnementales ou anthropiques, responsables du déclin mondial des récifs coralliens. Les objectifs de mon projet de recherche sont de définir les acteurs moléculaires localisés à l’interface symbiotique chez l’anémone de mer, Anemonia viridis. Premièrement, nous avons étudié les mécanismes cellulaires impliqués dans différents types de rupture de la symbiose et mis en évidence des phénomènes d’apoptose, nécrose et symbiophagie. Parallèlement, nous avons caractérisé chez l’anémone les gènes npc1 et npc2, impliqués chez les vertébrés dans le transport endosomal de stérols, et dont l’expression est modulée par l’état symbiotique. Nous avons pu montrer que le gène npc2d est issus d’une duplication et vraisemblablement d’une sub-fonctionnalisation et que les protéines NPC1 et NPC2 sont exprimées au voisinage des symbiotes. Nous proposons donc que la protéine NPC2-d soit utilisée comme marqueur de l’état de santé des Anthozoaires symbiotiques et que la protéine NPC1 soit un marqueur de la membrane périsymbiotique. Nous avons également développé un protocole afin d’identifier les protéines associées à l’interface symbiotique entre les deux partenaires. A terme, les cibles identifiées permettront une meilleure compréhension des mécanismes qui régulent la relation symbiotique.
https://tel.archives-ouvertes.fr/tel-01673491

NNT : 2015NICE4105
tel-01673491
https://tel.archives-ouvertes.fr/tel-01673491
https://tel.archives-ouvertes.fr/tel-01673491/document
https://tel.archives-ouvertes.fr/tel-01673491/file/2015NICE4105.pdf

Éditeur(s) : HAL CCSD Royal Society, The
Résumé : International audience
Determining the conditions under which populations may persist requires accurate estimates of demographic parameters, including immigration, local reproductive success, and mortality rates. In marine populations, empirical estimates of these parameters are rare, due at least in part to the pelagic dispersal stage common to most marine organisms. Here, we evaluate population persistence and turnover for a population of orange clownfish, Amphiprion percula, at Kimbe Island in Papua New Guinea. All fish in the population were sampled and genotyped on five occasions at 2-year intervals spanning eight years. The genetic data enabled estimates of reproductive success retained in the same population (reproductive success to self-recruitment), reproductive success exported to other subpopulations (reproductive success to local connectivity), and immigration and mortality rates of sub-adults and adults. Approximately 50% of the recruits were assigned to parents from the Kimbe Island population and this was stable through the sampling period. Stability in the proportion of local and immigrant settlers is likely due to: low annual mortality rates and stable egg production rates, and the short larval stages and sensory capacities of reef fish larvae. Biannual mortality rates ranged from 0.09 to 0.55 and varied significantly spatially. We used these data to parametrize a model that estimated the probability of the Kimbe Island population persisting in the absence of immigration. The Kimbe Island population was found to persist without significant immigration. Model results suggest the island population persists because the largest of the subpopulations are maintained due to having low mortality and high self-recruitment rates. Our results enable managers to appropriately target and scale actions to maximize persistence likelihood as disturbance frequencies increase.
ISSN: 0962-8452

hal-01239322
https://hal-univ-perp.archives-ouvertes.fr/hal-01239322
DOI : 10.1098/rspb.2015.1311

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
Natural disturbances are the dominant form of forest regeneration and dynamics in unmanaged tropical forests. Monitoring the size distribution of treefall gaps is important to better understand and predict the carbon budget in response to land use and other global changes. In this study, we model the size frequency distribution of natural canopy gaps with a discrete power law distribution. We use a Bayesian framework to introduce and test, using Monte Carlo Markov chain and Kuo–Mallick algorithms, the effect of local physical environment on gap size distribution. We apply our methodological framework to an original light detecting and ranging dataset in which natural forest gaps were delineated over 30 000 ha of unmanaged forest. We highlight strong links between gap size distribution and environment, primarily hydrological conditions and topography, with large gaps being more frequent on floodplains and in wind-exposed areas. In the future, we plan to apply our methodological framework on a larger scale using satellite data. Additionally , although gap size distribution variation is clearly under environmental control, variation in gap size distribution in time should be tested against climate variability.
ISSN: 1726-4170

hal-01590729
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590729
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590729/document
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590729/file/bg-14-353-2017.pdf
DOI : 10.5194/bg-14-353-2017

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Accumulating evidence suggests that developmental exposure to environmental chemicals may modify the course of brain development, ultimately leading to neuropsychiatric / neurodegenerative disorders later in life. In the present study, we assessed the impact of one of the most frequently used pesticides in both residential and agricultural applications - the synthetic pyrethroid cypermethrin (CYP) - on developmental neurotoxicity (DNT). Female mice were perinatally exposed to low doses of CYP (5 and 20 mg/kg body weight) from gestation to postnatal day 15. Behavioral analyses were performed during the offspring's early life and during adulthood. Postnatal analyses revealed that perinatal exposure to CYP disturbed motor development without modifying sensory and communicative skills. We found that later in life, CYP-exposed offspring expressed maladaptive behaviors in response to highly challenging tasks and abnormal sociability. Transcriptomic analyses performed in the offspring's brain at the end of the exposure, highlighted mitochondrial dysfunction as a relevant pathomechanism underlying CYP-induced DNT. Interestingly, several genes involved in proteostasis maintenance were also shown to be dysregulated suggesting that alterations in biogenesis, folding, trafficking and degradation of proteins may significantly contribute to CYP-related DNT. From a regulatory perspective, this study highlights that behavioral and transcriptomic analyses are complementary tools providing useful direction for better DNT characterization, and as such, should be used together more systematically.
ISSN: 1932-6203

hal-01616489
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01616489
DOI : 10.1371/journal.pone.0184475
PUBMED : 29020013

Éditeur(s) : HAL CCSD Wiley
Résumé : Wood specific gravity (WSG) is a strong predictor of tree performance across environmental gradients. Yet it remains unclear how anatomical elements linked to different wood functions contribute to variation in WSG in branches and roots across tropical forests. [br/][br/]We examined WSG and wood anatomy in white sand, clay terra firme and seasonally flooded forests in French Guiana, spanning broad environmental gradients found throughout Amazonia. We measured 15 traits relating to branches and small woody roots in 113 species representing the 15 most abundant species in each habitat and representative species from seven monophyletic lineages occurring in all habitats. [br/][br/]Fiber traits appear to be major determinants of WSG, independent of vessel traits, in branches and roots. Fiber traits and branch and root WSG increased from seasonally flooded species to clay terra firme species and lastly to white sand species. Branch and root wood traits were strongly phylogenetically constrained. Lineages differed in wood design, but exhibited similar variation in wood structure across habitats. [br/][br/]We conclude that tropical trees can invest differently in support and transport to respond to environmental conditions. Wind disturbance and drought stress represent significant filters driving tree distribution of Amazonian forests; hence we suggest that biophysical explanations should receive more attention.
ISSN: 0028-646X

hal-01195075
https://hal.archives-ouvertes.fr/hal-01195075
PRODINRA : 269680
PUBMED : 24329812