Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
1. The Before-After Control-Impact Paired Series (BACIPS) design distinguishes natural spatial and temporalvariability from variation induced by an environmental impact (or intervention) of interest. BACIPS is a powerfultool to derive inferences about interventions when classic experimental approaches (e.g. which rely on spatialreplicates and random assignment of treatments) are not feasible or desirable. Previously applied BACIPSdesigns generally assume that effects are sudden, constant and long-lived: that is, that systems exhibit ‘stepchanges’in response to interventions. However, complex ecological interactions or gradual interventions maycreate delayed and/or progressive responses, potentially impeding the reliability of classic (step-change) analyses.2. We propose a novel approach, the Progressive-Change BACIPS, which generalizes and expands the scope ofBACIPS analyses.We evaluate the relative performance of this approach using both simulated and real data thatexhibit step-change, linear, asymptotic and sigmoid responses following an intervention.We quantify the statisticalpower and accuracy of the Progressive-Change BACIPS under varying initial population densities, intensityof spatial sampling, effect sizes and number of sampling dates After the intervention.3. We show that Progressive-Change BACIPS identified the correct model among the set of candidate modelsunder most conditions and led to accurate estimates of the parameters that were used to generate the simulateddata. When data were sparse, and the dynamics complex, simpler (more parsimonious) models were favouredover the more complex models that actually generated the simulated data. Application of the Progressive-Change BACIPS to existing data sets from the literature led to strong support for specific models (over alternatives)and led to more specific inferences than possible under the classic BACIPS approach.4. The Progressive-Change BACIPS proposed here is more flexible than the original BACIPS formulationbecause the data are used to inform the form of the final model, rather than having the form of the modelimposed on the data. This leads to better estimates of the effects of environmental impacts and the time-scalesover which they operate. As a result, the Progressive-Change BACIPS should be applicable to a wide range ofstudies and should help improve investigation of time-dependent effects. R code to perform Progressive-ChangeBACIPS analysis is provided.
ISSN: 2041-210X

hal-01416668
https://hal-univ-perp.archives-ouvertes.fr/hal-01416668
DOI : 10.1111/2041-210X.12655

Éditeur(s) : HAL CCSD IOS Press
Résumé : International audience
Cancer is generally conceived as a dedifferentiation process in which quiescent post-mitotic differentiated cells acquire stem-like properties and the capacity to proliferate. This view holds for the initial stages of carcinogenesis but is more questionable for advanced stages when the cells can transdifferentiate into the contractile phenotype associated to migration and metastasis. Singularly from this perspective, the hallmark of the most aggressive cancers would correspond to a genuine differentiation status, even if it is different from the original one. This seeming paradox could help reconciling discrepancies in the literature about the pro-or anti-tumoral functions of candidate molecules involved in cancer and whose actual effects depend on the tumoral grade. These ambiguities which are likely to concern a myriad of molecules and pathways, are illustrated here with the selected examples of chromatin epigenetics and myocardin-related transcription factors, using the human MCF10A and MCF7 breast cancer cells. Self-renewing stem like cells are characterized by a loose chromatin with low levels of the H3K9 trimetylation, but high levels of this mark can also appear in cancer cells acquiring a contractile-type differentiation state associated to metastasis. Similarly, the myocardin-related transcription factor MRTF-A is involved in metastasis and epithelial-mesenchymal transition, whereas this factor is naturally enriched in the quiescent cells which are precisely the most resistant to cancer: cardiomyocytes. These seeming paradoxes reflect the bistable epigenetic landscape of cancer in which dedifferentiated self-renewing and differentiated migrating states are incompatible at the single cell level, though coexisting at the population level. © 2016-IOS Press and the authors. All rights reserved.
ISSN: 0888-6008

hal-01367146
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01367146
DOI : 10.3233/BD-150210
PUBMED : 27177343

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
During the GWADASEIS cruise (Lesser Antilles volcanic arc, February-March 2009) a very high resolution (VHR) seismic-reflection survey was performed in order to constrain Late Quaternary to Present faulting. The profiles we obtained evidence frequent "ponding" of reworked sediments in the deepest areas, similar to the deposition of Mediterranean "homogenites". These bodies are acoustically transparent (few ms t.w.t. thick) and are often deposited on the hanging walls of dominantly normal faults, at the base of scarps. Their thickness appears sufficient to compensate (i.e. bury) co-seismic scarps between successive earthquakes, resulting in a flat and horizontal sea floor through time. In a selected area (offshore Montserrat and Nevis islands), piston coring (4 to 7 m long) was dedicated to a sedimentological analysis of the most recent of these particular layers. It corresponds to non-stratified homogenous calcareous silty sand (reworked calcareous plankton and minor volcanoclastics). This layer can be up to 2 m thick, and overlies finegrained hemipelagites. The upper centimeters of the latter represent the normal RedOx water/sediment interface. 210Pb and 137Cs activities lack in the massive sands, while a normal profile of unsupported 210Pb decrease is observed in the hemipelagite below, together with a 137Cs peak correspond- ing to the Atmospheric Nuclear Experiments (1962). The RedOx level was thus capped by a recent instantaneous major sedimentary event considered as post-1970 AD; candidate seismic events to explain this sedimentary deposits are either the 16 March 1985 earthquake or the 8 October 1974 one (Mw=6.3 and Mw=7.4, respectively). This leads to consider that the syntectonic sedimentation in this area is not continuous but results from accumulation of thick homogenites deposited after the earthquakes (as observed in the following weeks after Haiti January 2010 event, McHugh et al., 2011). The existence of such deposits suggests that, in the area of study, vertical throw likely results from cumulated effects of separated earthquakes rather than from aseismic creep. Examination of VHR profiles shows that all major co-seismic offsets are recorded in the fault growth sequence and that co-seismic offsets can be precisely estimated. By using a sedimentation rate deduced from 210Pb decrease curve (0.5 mm yr−1) and taking into account minor reworking events detected in cores, we show that the Redonda system may have been responsible for five >M6 events during the last 34 000 yr. The approach presented in this work differs from fault activity analyses using displaced sets of isochronous surfaces and postulating co-seismic offsets. Combining VHR seismic imagery and coring we can decipher co-seismic vs. slow continuous displacement, and thus actually estimate the amplitude and the time distribution of major co-seismic offsets.
ISSN: 1561-8633

insu-00844581
https://hal-insu.archives-ouvertes.fr/insu-00844581
https://hal-insu.archives-ouvertes.fr/insu-00844581/document
https://hal-insu.archives-ouvertes.fr/insu-00844581/file/nhess-12-1755-2012.pdf
DOI : 10.5194/nhess-12-1755-2012

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Functional ecology has long considered the support function as important, but its biomechanical complexity is only just being elucidated. We show here that it can be described on the basis of four biomechanical traits, two safety traits against winds (SW) and self-buckling (SB), and two motricity traits involved in sustaining an upright position, tropic motion velocity (MV) and posture control (PC). All these traits are integrated at the tree scale, combining tree size and shape together with wood properties. The assumption of trait constancy has been used to derive allometric scaling laws, but it was more recently found that observing their variations among environments and functional groups, or during ontogeny, provides more insights into adaptive syndromes of tree shape and wood properties. However, over-simplified expressions have often been used, possibly concealing key adaptive drivers. An extreme case of over-simplification is the use of wood basic density as a proxy for safety. Actually, since wood density is involved in stiffness, loads and construction costs, the impact of its variations on safety is non-trivial. Moreover, other wood features, especially the microfibril angle (MFA), are also involved. Furthermore, wood is not only stiff and strong, but it also acts as a motor for MV and PC. The relevant wood trait for that is maturation strain asymmetry. Maturation strains vary with cell wall characteristics such as MFA, rather than with wood density. Finally, the need for further studies about the ecological relevance of branching patterns, motricity traits and growth responses to mechanical loads is discussed.
ISSN: 0022-0957

hal-00909904
https://hal.archives-ouvertes.fr/hal-00909904
https://hal.archives-ouvertes.fr/hal-00909904/document
https://hal.archives-ouvertes.fr/hal-00909904/file/Integrative_biomechanics_for_tree_Fournier_al.pdf
DOI : 10.1093/jxb/ert279

Éditeur(s) : HAL CCSD Wiley
Résumé : 1. A recent article published by Toledo (2011b) investigates the effects of spatial variations in climate and soil, and of logging disturbance, on tree and forest growth in Bolivia. It concludes that climate is the strongest driver of tree and forest growth and that climate change may therefore have large consequences for forest productivity and carbon sequestration. However, serious methodological and conceptual discrepancies have been found that challenge these conclusions.[br/] 2. Because of an errant coding of time after logging in the regression analysis, and because floristic changes induced by logging could not be incorporated into the analysis, the effect of logging on the average diameter growth is likely to have been strongly underestimated.[br/] 3. Basal area growth was improperly calculated as basal area change, and it displayed surprisingly high values, even among unlogged plots. We hypothesize that either these plots may be actually located in secondary forests recovering from past logging, or measurement biases may have hampered the data set.[br/] 4. Regardless of climategrowth relationships established across these plots, any inference concerning the potential effects of climate change on forest growth would require a specific quantitative assessment.[br/] 5. Synthesis. It is critical to re-assess the relative weight of climate and logging disturbance as driving factors of tree and forest growth, and to find an explanation for the very high basal area increment reported among the unlogged plots. We provide specific recommendations for further analyses of this and similar data sets.
ISSN: 0022-0477

hal-01032432
https://hal.archives-ouvertes.fr/hal-01032432
DOI : 10.1111/j.1365-2745.2011.01895.x

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La provincia de Limón, en la costa caribeña de Costa Rica, es conocida por su alto índice de pobreza, el alto desempleo y la violencia en comparación con el resto del país. Este artículo es una revisión de la historia de la región a través de las imágenes de la ciudad de Limón, entre el siglo XIX y el año 1967, fecha de la celebración de la apertura de Limón como puerto internacional. El objetivo es tratar de entender la situación actual a partir del análisis de las representaciones del pasado. Pero más específicamente, el trabajo pretende poner de relieve la diferencia étnica en la región como un importante obstáculo para su integración en el conjunto nacional.
La province de Limón dans le Caraïbe costaricien est connue pour sa condition de grande pauvreté, son taux de chômage élevé et sa violence par rapport au reste du pays. Cet article fait un bilan de l’histoire de la région à travers les images de la ville de Limón entre le xixe siècle et l’année 1967 ; date de la célébration de l’ouverture de Limón comme port international. Le but est d’essayer de mieux comprendre la situation actuelle à partir de l’analyse des représentations du passé. Mais, plus particulièrement, le travail cherche à mettre en relief la différence ethnique de la région comme un obstacle important à son intégration dans l’ensemble national.
The province of Limón in the Caribbean Coast of Costa Rica is known for its high rate of poverty, the high unemployment and violence compared to the rest of the country. This article is a review of the history of the region through the images of the city of Limón between the nineteenth century and the year 1967, date of the celebration of the opening of Limón as an international port. The goal is to try to understand the current situation from the analysis of representations of the past. But more specifically, the work seeks to highlight the ethnic difference in the region as a major obstacle to its integration into the national set.
Limón
Costa Rica

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.5715
http://journals.openedition.org/etudescaribeennes/5715

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Mobile-immobile mass transfer is widely used to model non-Fickian dispersion in porous media. Nevertheless, the memory function, implemented in the sink/source term of the transport equation to characterize diffusion in the matrix (i.e., the immobile domain), is rarely measured directly. Therefore, the question can be posed as to whether the memory function is just a practical way of increasing the degrees of freedom for fitting tracer test breakthrough curves or whether it actually models the physics of tracer transport. In this paper we first present a technique to measure the memory function of aquifer samples and then compare the results with the memory function fitted from a set of field-scale tracer tests performed in the same aquifer. The memory function is computed by solving the matrix diffusion equation using a random walk approach. The properties that control diffusion (i.e., mobile-immobile interface and immobile domain cluster shapes, porosity, and tortuosity) are investigated by X-ray microtomography. Once the geometry of the matrix clusters is measured, the shape of the memory function is controlled by the value of the porosity at the percolation threshold and of the tortuosity of the diffusion path. These parameters can be evaluated from microtomographic images. The computed memory function compares well with the memory function deduced from the field-scale tracer tests. We conclude that for the reservoir rock studied here, the atypical non-Fickian dispersion measured from the tracer test is well explained by microscale diffusion processes in the immobile domain. A diffusion-controlled mobileimmobile mass transfer model therefore appears to be valid for this specific case.
ISSN: 0043-1397

insu-00373705
https://hal-insu.archives-ouvertes.fr/insu-00373705
https://hal-insu.archives-ouvertes.fr/insu-00373705/document
https://hal-insu.archives-ouvertes.fr/insu-00373705/file/Gouze_et_al-2008-Water_Resources_Research.pdf
DOI : 10.1029/2007WR006690

Éditeur(s) : HAL CCSD
Résumé : 1 p.
For groundwater issues (potential leakages in waste repository, aquifer management ...), the development of modeling techniques is far ahead of the actual knowledge of aquifers. This raises two fundamental issues: 1) which and how much data are necessary to make predictions accurate enough for aquifer management issues; 2) which models remain relevant to describe the heterogeneity and complexity of geological systems. The French observatory H+ was created in 2002 with the twofold motivation of acquiring a large database for validating models of heterogeneous aquifers, and of surveying groundwater quality evolution in the context of environmental changes. H+ is a network of 4 sites (Ploemeur, Brittany, France; HES Poitiers, France; Cadarache, France; Campos, Mallorca, Spain) with different geological, climatic, and economic contexts. All of them are characterized by a highly heterogeneous structure (fractured crystalline basement for Ploemeur, karstified and fractured limestone for Poitiers, Cadarache and Mallorca), which is far to be taken into account by basic models. Ploemeur is exploited as a tap-water plant for a medium-size coastal city (15,000 inhabitants) for 20 years. Each site is developed for long term investigation and monitoring. They involves a dense network of boreholes, detailed geological and geophysical surveys, periodic campaigns and/or permanent measurements of groundwater flow, water chemistry, geophysical signals (including ground motions), climatic parameter, etc. Several large-scale flow experiments are scheduled per year to investigate the aquifer structure with combined geophysical, hydrogeological, and geochemical instruments. All this information is recorded in a database that has been developed to improve the sustainability and quality of data, and to be used as a collaborative tool for both site researchers and modelers. This project lasts now for 5 years. It is a short time to collect the amount of information necessary to apprehend the complexity of aquifers; but it is already enough to obtain a few important scientific results about the very nature of the flow heterogeneity, the origin and residence time of water elements, the kinetic of geochemical processes, etc. We have also developed new methods to investigate aquifers (in-situ flow measurements, flow experiment designs, groundwater dating, versatile in-situ probes, etc.). This experience aiming at building up long term knowledge appears extremely useful to address critical issues related to groundwater aquifers: the structure and occurrence of productive aquifer in crystalline basement, the assessment of aquifer protection area in the context of highly heterogeneous flow, the biochemical reactivity processes, the long term evolution of both water quantity and quality in the context of significant environmental changes, for instance.
AGU, Fall Meeting 2008
San Francisco, United States

insu-00375980
https://hal-insu.archives-ouvertes.fr/insu-00375980

Éditeur(s) : ISTPM
Résumé : A micropaleontological study of sediment sampling on the French Guiana coast showed the occurrence of an important fauna of actual planktonic and benthic Foraminifera.
Revue des Travaux de l'Institut des Pêches Maritimes (0035-2276) (ISTPM), 1977-12 , Vol. 41 , N. 4 , P. 403-416

Droits : Ifremer
http://archimer.ifremer.fr/doc/1977/publication-1992.pdf
http://archimer.ifremer.fr/doc/00000/1992/

Éditeur(s) : HAL CCSD Ecological Society of America
Résumé : Reliable assessment of fish origin is of critical importance for exploited species, since nursery areas must be identified and protected to maintain recruitment to the adult stock. During the last two decades, otolith chemical signatures (or "fingerprints") have been increasingly used as tools to discriminate between coastal habitats. However, correct assessment of fish origin from otolith fingerprints depends on various environmental and methodological parameters, including the choice of the statistical method used to assign fish to unknown origin. Among the available methods of classification, Linear Discriminant Analysis (LDA) is the most frequently used, although it assumes data are multivariate normal with homogeneous within-group dispersions, conditions that are not always met by otolith chemical data, even after transformation. Other less constrained classification methods are available, but there is a current lack of comparative analysis in applications to otolith microchemistry. Here, we assessed stock identification accuracy for four classification methods (LDA, Quadratic Discriminant Analysis [QDA], Random Forests [RF], and Artificial Neural Networks [ANN]), through the use of three distinct data sets. In each case, all possible combinations of chemical elements were examined to identify the elements to be used for optimal accuracy in fish assignment to their actual origin. Our study shows that accuracy differs according to the model and the number of elements considered. Best combinations did not include all the elements measured, and it was not possible to define an ad hoc multielement combination for accurate site discrimination. Among all the models tested, RF and ANN performed best, especially for complex data sets (e. g., with numerous fish species and/or chemical elements involved). However, for these data, RF was less time-consuming and more interpretable than ANN, and far more efficient and less demanding in terms of assumptions than LDA or QDA. Therefore, when LDA and QDA assumptions cannot be reached, the use of machine learning methods, such as RF, should be preferred for stock assessment and nursery identification based on otolith microchemistry, especially when data set include multispecific otolith signatures and/or many chemical elements.
ISSN: 1051-0761

hal-00644549
https://hal.archives-ouvertes.fr/hal-00644549
DOI : 10.1890/09-1887.1

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
Alveolar proteinosis (AP) is a rare disease characterized by alveolar accumulation of surfactant components, which impairs gas exchange. AP is classified into three groups: auto-immune AP defined by the presence of plasma autoantibodies anti-GM-CSF, the most frequent form (90 % of all AP); secondary AP, mainly occurring as a consequence of haematological diseases, or following on from toxic inhalation or infections, and genetic AP, which affects almost exclusively children. AP diagnosis is suspected where chest CT-scan demonstrates interstitial lung disease with a crazy paving aspect; and confirmed by bronchoalveolar lavage, which has a milky appearance and contains periodic acid Schiff positive proteinaceous alveolar deposits. The use of surgical lung biopsy to confirm AP is less frequent nowadays. In this context, positive antibodies against GM-CSF indicates an auto-immune etiology of the AP. Concerning management, whole lung lavage is the gold standard therapy. In refractory AP, new treatments are available such as subcutaneous or inhaled GM-CSF supplementation, or rituximab infusions. The clinical course is unpredictable. Spontaneous improvement or even cure can occur, and the 5-year actuarial survival is 95 %. The most frequent complications are infectious etiology.
La protéinose alvéolaire pulmonaire (PAP) est une maladie rare caractérisée par l’accumulation alvéolaire de composants du surfactant qui gêne les échanges gazeux. Les PAP sont séparées en trois groupes : les PAP auto-immunes caractérisées par la présence d’anticorps sériques anti-GM-CSF qui sont les plus fréquentes ; les PAP secondaires à une maladie sous-jacente, le plus souvent hématologique, mais aussi à l’inhalation de toxiques et à des infections ; enfin, les PAP d’origine génétique. Le diagnostic de PAP est évoqué sur le scanner thoracique avec une pneumopathie infiltrante diffuse ayant un aspect classique de crazy paving, puis confirmé par l’aspect laiteux du lavage bronchoalvéolaire, et la présence de matériel lipoprotéinacé PAS positif. La confirmation du diagnostic de PAP par biopsie pulmonaire chirurgicale est désormais rarement nécessaire. La positivité des anticorps sériques anti-GM-CSF signe le caractère auto-immun de la maladie. Le traitement de référence des PAP auto-immunes est le « grand lavage pulmonaire thérapeutique ». En cas de maladie réfractaire, d’autres traitements sont disponibles, tels que le GM-CSF en injection sous-cutanée ou en aérosol et le rituximab. L’évolution de la maladie est imprévisible. Une évolution spontanément favorable ou même une guérison spontanée peuvent survenir et la survie actuarielle à 5 ans est de 95 %. Les principales complications sont infectieuses.
ISSN: 0761-8425

hal-01085907
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01085907
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01085907/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01085907/file/Prot%C3%A9inose%20alv%C3%A9olaire%20pulmonaire_accepted.pdf
DOI : 10.1016/j.rmr.2014.08.009

Éditeur(s) : HAL CCSD
Résumé : International audience
We present a chronological (K-Ar), petrologic and geochemical study (major and trace elements, Sr-Nd isotopes) of Middle Miocene (ca. 16-14 Ma) calc-alkaline rocks (basalts to andesites) extruded in the present-day back-arc region of Central Patagonia (Zeballos Volcanic Sequence (ZVS), 47 S). This magmatism started shortly after mafic plutonism ceased in the arc region (ca. 16 Ma, 200 km west), and ended ca. 2 My before the onset of voluminous slab tear-related back-arc alkaline basaltic magmatism (ca. 12 to Pliocene). The studied calc-alkaline rocks have a typical subduction-related signature (high LILE/HFSE ratios, depletion in Nb, Ta and Ti; Ba/La >20; Ta/Hf <1.5; (Sr-87/Sr-86)(o)=0.70366-0.70402, epsilon(Nd)=+0.1-+3.8). Major and trace elements contents are consistent with their evolution by closed system fractional crystallization of a presumed parental liquid similar in composition to the most basic rock of the suite. Moreover, a strong subducted sediment imprint is recognized (increasing Th/HFSE and decreasing Ce/Pb during differentiation). However, these rocks show striking similarities with volcanic complexes emplaced above areas where a gently dipping slab occurs (high K contents; similar LREE/HREE, Nb/Zr, Ba/Nb; Th/Hf; Th/Ta, Ta/Hf<0.3), particularly the present-day Andean flat-slab region and the Neuquen Basin during the Late Miocene. A comprehensive tectono-magmatic model is here presented to explain the generation and extrusion of these calc-alkaline magmas during the Middle Miocene. The development of a transient low-angle subduction and the resulting eastward migration of the volcanic front are then proposed. Mixing between stored remnants of calc-alkaline magmatism and later primitive alkaline melts is envisioned as the most likely process accounting for the transitional signature (i.e., intermediate between calc-alkaline and alkaline, La/Nb >I; TiO2 <2 wt%) of some basalts extruded synchronously with genuine alkaline lavas in the Neogene Patagonian Plateau Lavas province.
Volcanismo calcoalcalino durante el Mioceno Medio en Patogonia Central (47°S): petrogenesis e implicaciones en la dinamica de placas. En este trabajo se presenta un estudio cronologico (K-Ar), petrologico y geoquimico (elementos mayores y trazas, isotopos de Sr-Nd) de rocas calcoalcalinas (basaltos a andesitas) del Mioceno Medio (16-14 Ma) que ocurren en una posicion de trasarco en Patagonia Central (47°S; Secuencia Volcanica Zeballos, SVZ). Este magmatismo comenzo poco despees de que el plutonismo mafico cesara en la region bajo el arco (ca. 16 Ma, 200 km al oeste), y termino ca. 2 My antes del comienzo de un voluminoso evento magmatico basaltico alcalino desarrollado en el trasarco, relacionado con ventanas astenosfericas, que continuo hasta el Pleistoceno. Las rocas calcoalcalinas estudiadas tienen una quimica tipicamente relacionada con procesos de subduccion (altas razones LILE/HFSE, empobrecimientos en Nb, Ta y Ti; Ba/La>20; Ta/Hf l,5; (87Sr/86Sr)0=0,70366-0,70402, End~O,1±3,8); y sus contenidos de elementos mayores y trazas son consistentes con una evolucion por cristalizacion fraccionada, en un sistema cerrado, desde un liquido parental de composicion similar a la de la roca mas basica del conjunto analizado. Se reconoce, ademas, la influencia de sedimentos subductados en la composicion de estos magmas (aumento de la razon Tb/HFSE y disminucion de la razon Ce/Pb durante la diferenciacion). Sin embargo, estas rocas muestran importantes similitudes composicionales con las de complejos volcanicos emplazados sobre areas donde ocurre subduccion de bajo angulo (altos contenidos de K, similares razones LREF/HREE, Nb/Zr, Ba/Nb; TblHf; TblTa, Ta/Hf O,3), particularmente rocas de la actual region de subduccion plana en Chile central-Argentina y de la cuenca de Neuquen durante el Mioceno Superior. Se propone aqui un modelo tectono-magmatico que explica la generacion y extension de magmas calcoalcalinos en una posicion de trasarco durante el Mioceno Medio en Patagonia mediante el desarrollo de un fenomeno transiente de subduccion de bajo angulo y el consiguiente desplazamiento hacia el este del frente volcanico. Ademas, la mezcla entre remanentes de este magmatismo calcoalcalino almacenados en la corteza y fundidos alcalinos posteriores, provenientes de la astenosfera, se presenta como el proceso responsable de la generacion de la signatura transicional (i.e., intermedia entre calcoalcalina y alcalina, La/Nb>1; TiO2 2 wt%) reconocida en algunos basaltos que ocurren contemporaneamente con otros puramente alcalinos en la provincia de las Lavas Neogenas de Plateau de la Patagonia.
ANDEAN GEOLOGY

insu-00561888
https://hal-insu.archives-ouvertes.fr/insu-00561888
DOI : 10.5027/andgeo2010-678

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Le tourisme de masse ayant déjà démontré ses limites et fait l’objet de critiques et d’indignation de la part des associations internationales de la protection de l’environnement cède peu à peu sa place au tourisme durable. Ce dernier tient compte de la protection de l’environnement et de la sauvegarde des richesses naturelles en offrant aux touristes des produits purement bio et des cultures tout à fait originales.Dans un contexte connu par sa complexité, vu les inégalités environnementales et sociales que connaît le Maroc, et pour remédier ce déséquilibre des acteurs économiques, des locaux dans la majorité des cas, ont opté pour des investissements touristiques dans les milieux ruraux. Ainsi des établissements touristiques ruraux commencent à prendre de l’ampleur, visant à consolider la notion du tourisme durable avec ses produits artisanaux locaux, ses variétés culinaires régionales et ses folklores saisonniers aux traditions bien enracinées. Mais ces actions sont-elles en mesure d’assurer un avenir prometteur à ces établissements ruraux, sans l’intervention de l’État qui a un rôle primordial à jouer en la matière de la formation et la qualification des ressources humaines dans le secteur du tourisme ; une formation pour préserver l’environnement et les ressources naturelles et donner un nouvel élan au tourisme rural dont la modernité demeure une référence essentielle.Par la beauté naturelle de leurs sites, la qualité de leurs aliments, le comportement clair et limpide de leurs personnes, les établissements d’hébergements touristiques ruraux marocains attirent déjà un nombre significatif de touristes qui viennent à l’origine pour un séjour de deux ou trois jours et prolongent souvent à une semaine séduits par la qualité du séjour. Eau pure, qualité de l’air, richesse culturelle, autant d’atouts qui justifient le soutien de ce genre de tourisme qui inspire notre enquête au niveau de la commune rurale d’Asni.
It is high people admitted that mass tourism has its limits as there have been consequences. Indeed several NGOS as well as international organizations aiming at the protection of the environment see that this destructive or harmful tourism is losing ground it is being substituted or replaced by eco-friendly tourism. This latter target the preservation of mother earth as well as its natural resources by providing a new type of tourism labeled rural tourism whose first and paramount objective is providing tourists with organic products. This green or rural tourism tries at all cost to promote artistic commodities, authentic cultures and purely traditional folk.Rural tourism is actually expecting more prosperity and progress but on condition that the local authorities and the government cooperate more to give a push to this kind of business via a perfect or division of human resources. Rural tourism represent a new image of modern tourism that aims to protect the environment and diversity. From the beauty of the natural land scape, the quality of the food served, the professionalism of the staff members the touristic accommodation units based in Moroccan countryside manage to attract a significant number of tourists, who often come for 2 or 3 days prolong their stay for a week for having fond a deep pleasure. The water is pure, the atmospheric air is filtered, the cultural wealth is vast, it is therefore appropriate to sustain and support this kind of tourism that inspires our investigation at the rural town of Asni.
Maroc
Asni

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.7638
http://journals.openedition.org/etudescaribeennes/7638

Éditeur(s) : HAL CCSD Botanical Society of America
Résumé :  
Tree buckling risk (actual height/critical buckling height) is an important biomechanical trait of plant growth strategies, and one that contributes to species coexistence. To estimate the diversity of this trait among wide samples, a method that minimizes damage to the plants is necessary. On the basis of the rarely used, complete version of Greenhill's model (1881, Proceedings of the Cambridge Philosophical Society 4(2): 65-73), we precisely measured all the necessary parameters on a sample of 236 saplings of 16 species. Then, using sensitivity (variance) analysis, regressions between successive models for risk factors and species ranks and the use of these models on samples of self- and nonself-supporting saplings, we tested different degrees of simplification up to the most simple and widely used formula that assumes that the tree is a cylindrical homogeneous pole. The size factor had the greatest effect on buckling risk, followed by the form factor and the modulus of elasticity of the wood. Therefore, estimates of buckling risk must consider not only the wood properties but especially the form factor. Finally, we proposed a simple but accurate method of assessing tree buckling risk that is applicable to a wide range of samples and that requires mostly nondestructive measurements.
ISSN: 0002-9122

hal-01032059
https://hal.archives-ouvertes.fr/hal-01032059

Éditeur(s) : Université de Bretagne Occidentale
Résumé : The negative impact of the man on the environment unquestionably increases. The coastal environment as a whole is the maritime environment which is the most exposed to man-made eutrophication. For instance, nitrate loads to coastal waters off Brittany (France) have increased 10 times (from 3 to s 30mg L-1NO3) during the four last decades. Eutrophication of this coastal zone is now a recurrent problem, more and more worrying. This eutrophication exhibits two main forms : " green tides ", which are caused by local proliferations and stranding of green macro-algae (particularly the Ulva species) in nitrogen-enriched areas ; phytoplanktonic blooms, which are responsible for coloured water events, toxic species can be present (Pseudo-Nitzschia, Alexandrium, Dinophysis), and induce banning of shellfish consumption. The objectives of this study are to assess the respective role of various rivers (especially the Loire and the Vilaine) in the eutrophication of the Brittany shelf ecosystem and test the impact of nitrogen enrichment in the triggering of Pseudo-Nitzchia toxicity. For these purposes, a coupled hydrodynamical/ biogeochemical 3D model has been developed and validated against past measured time-series and satellite images. After a brief analysis of primary production over the Brittany shelf under different conditions, we show a description of the real time adaptation of this model. Daily results are currently presented in real time on www.previmer.org web site. The inability of the model to correctly simulate near shore phytoplankton is worsened in this model by the fact that the turbidity field used is a climatological one, made by satellite images averaged on a decadal basis. First, near shore pixels of satellite images are scarcely reliable, secondly a climatological mean cannot represent the sudden bursts or drops of the real turbidity, highly dependent on the actual sea-state : this can explain also why the model at this moment fails to reproduce a sudden bloom occurring in a short period of sunny and calm weather. The simulated Pseudo-Nitzschia biomass and induced risk of toxicity in the water column cannot really be validated offshore, because monitoring measurements are available only near the coast, and deal only with toxicity in benthic filter feeders. To get temporarily rid of that problem, an interesting improvement would be to add to the operational model the bio-accumulation of toxin in the shellfishes : simulated concentrations in shellfish fresh would become directly comparable with usual measurements of the monitoring networks. Our model points out the important impact of Loire river loads on the primary production on the western and southern Brittany. This result is crucial for administrations in charge of reducing the terrestrial loadings responsible for eutrophication, because it can delay reduction programs on small tributaries until the main input from the Loire has been significantly reduced. A question arises, about the reliability of the haline stratification in the model, because the horizontal extent of the Loire plume will be enhanced by a stronger stratification.
L'eutrophisation des milieux marins côtiers, de plus en plus importante, représente un des impacts majeurs des activités humaines sur l'environnement. Les phénomènes d'eutrophisation sont en constante augmentation ; ces dernières décennies ont vu le nombre de sites touchés augmenter de par le monde. La bande côtière bretonne est particulièrement concernée par ce phénomène. L'eutrophisation s'y manifeste de deux façons : "Des phénomènes de marée vertes, très localisées, qui sont provoqués par la croissance excessive et l'échouage de macro-algues du genre Ulva dans ces zones riches en azote ; Des blooms de phytoplancton à l'origine des phénomènes d'eaux colorées, qui peuvent aussi provoquer des interdictions de consommation de coquillages lorsque les espèces mises en jeu sont toxiques (Pseudo-Nitzschia, Alexandrium, Dinophysis). L'objectif de ce travail est multiple : il vise à mettre en évidence et à comprendre l'impact et le rôle des apports en nutriments sur la production primaire et l'eutrophisation des milieux côtiers. Ce travail a aussi pour ambition l'identification et la compréhension des causes des phénomènes d'eutrophisation et permettre ainsi d'apporter des solutions ou des pistes d'amélioration. En n, il a aussi un objectif de prévision à court terme de l'état biologique sur la zone. Pour atteindre ces objectifs, un modèle en temps réel a été mis en oeuvre. Les résultats de simulations numériques et de mesures satellitaires sont présentés sur internet : www.previmer.org. L'outil principal de ce travail est un modèle couplé physique/biogéochimie. La partie hydrodynamique est fournie par le code Mars3D (3D hydrodynamical Model for Application at Regional Scale) développé à IFREMER. Au code hydrodynamique Mars3D est couplé le modèle des cycles de l'azote, du phosphore et du silicium d'IFREMER. Le modèle couplé permet de simuler en 3 dimensions et de manière dynamique les courants, le brassage horizontal et vertical, les champs de température et de salinité, mais aussi les principaux cycles de nutriments, reproduisant ainsi les conditions déterminantes de la production primaire. La croissance des algues est modélisée, et nous permet de voir l'influence des panaches de dilution des principales rivières bretonnes sur leur croissance. Les diffcultés du modèle à correctement simuler les concentrations en phytoplancton près des zones côtières, sont probablement dues à l'utilisation d'une climatologie de concentration en matière en suspension fondée sur des données satellitaires. Tout d'abord, les pixels côtiers des images satellitaires sont entachés d'erreurs, ensuite une climatologie n'est pas capable de représenter les apports soudains des fleuves lors des crues. Cela peut expliquer l'incapacité du modèle a représenter certains blooms liés à des périodes ensoleilées et calmes. A ce modèle de base nous avons ajouté un genre spécifique de phytoplancton : le genre Pseudo-Nitzschia. Certaines espèces de Pseudo-Nitzschia sont réputées toxiques. En effet, ce phytoplancton a la capacité de synthétiser une toxine : l'acide domoïque. Cette toxine est responsable du syndrome ASP (Amnesic Shellfish Poisoning). Le modèle reproduit globalement les mêmes zones de toxicité que les mesures du REPHY, et donne des résultats encourageants. L'étude montre que la Loire influence une large partie de la bande côtière bretonne ; son panache remonte jusqu'au nord de la mer d'Iroise, et contribue pour une grande part à l'enrichissement du sud et de l'ouest de la Bretagne. Le traçage de l'azote en provenance de la Loire au sein des cycles biogéochimiques nous a permis de quantifier cet enrichissement.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00015/12603/9481.pdf
http://archimer.ifremer.fr/doc/00015/12603/

Éditeur(s) : HAL CCSD Czech Phycological Society
Résumé : International audience
As first observed on a group of taxa related to Cocconeis peltoides Hustedt, several other Cocconeis eHRenbeRG (Bacillariophyta) taxa possess a row of minute marginal pores on the external side of their sternum valve (SV) connected to small and simple internal portules, or processes. These processes are often located in continuity with the striae, but can also be slightly shifted or distant from the distal areola of the striae. The row of pores is often, but not always, externally separated from the stria by a crista marginalis. Within Cocconeis, and possibly all raphid diatoms, these processes seem unique and restricted to a few taxa. A list is presented of the taxa pertaining (or close) to Cocconeis that are actually known to share these micro–structures. In addition, the morphological variability of the processes is described in detail and a morphological comparison of the taxa is provided. The characteristic features of taxa showing a row of SV processes permit the tentative definition of several morphological groups. It is difficult to prove the taxonomic affiliation of these taxa and demonstrate or refute that these processes are ancestral characters. Some of these taxa are rare and restricted to low latitudes (e.g., tropical taxa) while others are frequent and ubiquitous. Abbreviations: (LM) light microscope, (SEM) scanning electron microscope, (RV) raphe valve, (SV) sternum valve, (RVVC) raphe valve valvocopula, (SVVC) sternum valve valvocopula
ISSN: 1802-5439

hal-01212883
https://hal-univ-perp.archives-ouvertes.fr/hal-01212883
https://hal-univ-perp.archives-ouvertes.fr/hal-01212883/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01212883/file/fottea_fot-201502-0003.pdf
DOI : 10.5507/fot.2015.015

Éditeur(s) : HAL CCSD Springer-Verlag Berlin Heidelberg
Résumé : International audience
The main biological function of reaction wood is to act as " muscle " for trees, enabling them to control their posture. The key property to achieve this function is the development of high mechanical stress during the formation of reaction wood cells, called " maturation strains ". Actually, reaction wood formation is basically the asymmetric formation of wood around the tree circumference, with higher maturation strains on the side where reaction wood is formed than on the opposite side. This asymmetry enables stems to bend upward or to compensate for the downward bending induced by gravity. At the cross section level, the performance in this biological function is linked not only to the magnitude of this asymmetry but also to an effect of the cross-sectional size (diameter) of the stem. Eccentric growth and variations in wood mechanical stiffness are second order effects that can modify this performance. Differences in maturation strains between reaction and non-reaction woods are related to their specific cell wall structure and composition. The swelling of the cell wall matrix during maturation and the effect of microfibril angle explain the differences in maturation strains between normal and compression wood. However, this mechanism fails in explaining the high maturation shrinkage of tension wood, and several hypotheses at the molecular levels are still under debate. How trees perceive their gravitational disequilibrium is also an open question for physiologists. Integrative biomechanical modelling (from the polymer level to the cell wall, cross section and whole tree levels) enables defining key variables that explain the performance of reaction wood as a system that insures the stem motricity. Maturation strains can be precisely measured only in recently formed wood at the tree surface, but their changes during the whole tree life can also be estimated by retrospective dendrochronological analysis through structural markers of reaction wood. Lastly, wood in living trees ensures general storage, defence, vascular and skeletal functions, that ask general questions about synergies and trade-offs as the structural characteristics of reaction wood can affect all these functions.
The Biology of Reaction Wood

ISBN : 978-3-642-10813-6
hal-01452085
https://hal.archives-ouvertes.fr/hal-01452085
https://hal.archives-ouvertes.fr/hal-01452085/document
https://hal.archives-ouvertes.fr/hal-01452085/file/Chap_Gril_al_Biomechanical_action_biological_functions_2014.pdf

Éditeur(s) : HAL CCSD
Résumé : Macrophages (MΦ), well-known to play a key role in immune response, also respond to environmental toxic chemicals such as diesel exhaust particles (DEP), an air pollutant recently classified as carcinogenic to humans. MΦ are heterogeneous and plastic cells which activate according to their microenvironment into either an M1 subtype (so called classically activated or pro-inflammatory) under IFNγ and LPS stimulation or an M2 subtype (so called alternatively activated or anti-inflammatory) under IL-4 and/or IL-13 stimulation. However, potential effects of DEPs on M1/M2 MΦ polarization remain poorly documented. First, we characterized the expression marker of in vitro M-CSF-differentiated MΦ from human monocytes and activated into the M1 or M2 subtypes. Our main results show that M-CSF-generated MΦ considered as anti-inflammatory are actually able to switch to an M1 phenotype after IFNγ/LPS stimulation. Furthermore, the markers identified in this study were used to assess the impact of organic extracts of DEP (DEPe) on MΦ polarization and more generally on their physiology. DEPe alter some M1 and M2 markers expressed by polarized MΦ, without causing the overall inhibition of the M1 and M2 polarization process or the switch to a different phenotype. This phenotype alteration is associated with a decrease in the LPS-dependent inflammatory response in M1 MΦ and the chemotactic capacities in M2 MΦ. DEPe decrease the secretion of some cytokines and chemokines such as IL-6, IL-12p40 and CCL18 via AhR and/or Nrf2 activation. At the same time, we show that M1 and M2 MΦ in response to DEPe are able to secrete a sufficient level of a pro-fibrotic growth factor, the platelet derived growth factor B (PDGF-B) via AhR activation, leading to stimulation of lung fibroblast proliferation. Finally, these works show that DEPe have immunotoxic properties with regards to the physiology of human in vitro polarized MΦ. This immunotoxicity may then contribute to the deleterious effects of these urban environmental contaminants on human health.
Les macrophages (MΦ), des cellules clefs de la réponse immunitaire peuvent répondre à des contaminants environnementaux comme les particules diesel (DEP), des polluants atmosphériques récemment classés cancérigènes pour l'Homme. Les MΦ sont des cellules hétérogènes et plastiques qui s'activent en fonction de leur microenvironnement soit en MΦ M1 (dits classiquement activés ou pro-inflammatoires) sous l'effet de l'INFγ et du LPS soit en MΦ M2 (dits alternativement activés ou réparateurs) sous l'effet de l'IL-4 et/ou de l'IL-13. Les effets des DEP sur la polarisation M1/M2 des MΦ restent peu documentés. Nous avons dans un premier temps caractérisé l'expression des marqueurs des MΦ différenciés in vitro en présence de M-CSF à partir de monocytes humains et polarisés en sous-type M1 ou M2. Nos principaux résultats montrent que les MΦ différenciés au M-CSF considérés comme des MΦ anti-inflammatoires, sont en réalité capables de s'activer vers un phénotype M1 après une stimulation au LPS/IFNγ. De plus, les marqueurs mis en évidence au cours de ce travail ont permis d'évaluer l'impact d'extraits organiques de DEP (DEPe) sur la polarisation des MΦ et plus généralement sur leur physiologie. Les DEPe altèrent l'expression de certains marqueurs M1 et M2 des MΦ, sans toutefois provoquer d'inhibition globale des processus de polarisation M1 et M2 ou de transition d'un phénotype vers un autre. Cette altération du phénotype est associée à une diminution de la réponse inflammatoire LPS-dépendante dans les MΦ M1 et des capacités chimiotactiques des MΦ M2. Les DEPe diminuent la sécrétion de certaines cytokines et chimiokines comme l'IL-6, l'IL-12p40 et le CCL18 via l'activation d'AhR et/ou de Nrf2. Parallèlement, nous montrons que les MΦ M1 et M2 exposés aux DEPe sécrètent le platelet deried growth factor B (PDGF-B), un facteur de croissance profibrosant, via l'activation d'AhR en quantité suffisante pour stimuler la prolifération de fibroblastes pulmonaires. Au total, ces travaux démontrent que les DEP possèdent des propriétés immunotoxiques vis-à-vis de la physiologie des macrophages humains polarisés in vitro. Cette immunotoxicité pourrait participer aux effets délétères de ces contaminants environnementaux urbains sur la santé humaine.
https://tel.archives-ouvertes.fr/tel-01188679

NNT : 2015REN1S011
tel-01188679
https://tel.archives-ouvertes.fr/tel-01188679
https://tel.archives-ouvertes.fr/tel-01188679/document
https://tel.archives-ouvertes.fr/tel-01188679/file/JAGUIN_Marie.pdf

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
We performed forward modelling of seismic anisotropy beneath a migrating strike-slip plate boundary to: (1) test if such a geodynamic context might explain teleseismic shear wave splitting data in the vicinity of the central part of the San Andreas Fault and (2) constrain the power of such data to unravel vertical and lateral variations in deformation patterns in the upper mantle. The modelling involves five steps: (1) thermomechanical modelling, using a finite-element code, of the deformation field, (2) viscoplastic self-consistent modelling of the resulting olivine and pyroxene crystal preferred orientations, (3) calculation of the elasticity tensors for different domains of the finite elements (FEs) model, (4) forward modelling of seismic wave propagation through the model using ray theory, finite-frequency theory and a full-wave approach and (5) performing splitting measurements on the synthetic seismograms. SKS splitting data in central California are best fitted by a model with a hotter geotherm within 60 km of the plate boundary accounting for the opening of an asthenospheric window due to the northward migration of the Mendocino Triple Junction. The westward motion of the plate boundary cannot however explain the rotation of fast polarization directions east of the San Andreas Fault in central California. Comparison between modelled and measured individual shear wave splitting also implies that the homogeneity of the two-layer models accounting for the observations in the vicinity of the San Andreas Fault indicates a sharp transition between lithospheric and asthenospheric deformations beneath this plate boundary. The ability of different synthetic approaches to localize horizontally and vertically the plate boundary-related deformation differs significantly. Splitting in ray theory synthetics closely follow variations in olivine crystallographic preferred orientations in the model. In contrast, splitting analysis on full-wave synthetics, which should be more representative of actual long-period SKS waves, results in smooth apparent lateral variations of anisotropy; the exact location and width of the plate boundary may only be retrieved by comparing fast-polarization profiles obtained using a multichannel analysis on waves with different periods.
ISSN: 0956-540X

hal-01236150
http://hal.univ-reunion.fr/hal-01236150
http://hal.univ-reunion.fr/hal-01236150/document
http://hal.univ-reunion.fr/hal-01236150/file/Bonnin_San_Andreas_modelling_GJI2012.pdf
DOI : 10.1111/j.1365-246X.2012.05650.x

Éditeur(s) : HAL CCSD
Résumé : International audience
The published literature related to distributed parameter systems theoryis quite large, and it is not feasible in a single book to give a detailedreview on the wide historical development of all of it. Our choice of whatto cover was motivated by the following consideration. Since distributedparameter systems evolve in time and space, the research investigationson their analysis and control focus on considering the whole system domainfor any study. We feel strongly that within this research field, animportant consideration was missing; that of considering that the systemmay give raise to prescribed subdomains (regions) where one has toachieve an objective. This is the case of so many applications rangingfrom engineering to life sciences. For that reason, covering classical prerequisitein analysis and control areas, we have devoted the book to theextension of the classical distributed parameter results to regional ones.Students of mathematics do not come into contacts with distributedparameter systems during their classes. They are introduced to themwhen they start research and often they are influenced by the knowledgeand the advice of experimented scientists. This was our case at the verybeginning of these research investigations in the mid 70’s. We would liketo express our special thanks to many of them and mainly late ProfessorAnthony J. Pritchard (University of Warwick, GB) and late Professor J.L. Lions (College de France) who were so encouraging in front of our determinationin driving an academic carrier. We also express our thanksto our co-workers and research students. We wish to acknowledge thefeedback from all those who took courses based on various parts of thisbook.This book may be used by graduate students in mathematics, engineering,physics, and even by students from other fields such as life orenvironmental sciences. This book may also be used as an informationvi Avant-propossource for researchers and education professionals. We assume that thereaders already know the basic concepts of analysis and control of distributedparameter systems.
https://hal.archives-ouvertes.fr/hal-01297261

ISBN : 978-2-35412-140-2
hal-01297261
https://hal.archives-ouvertes.fr/hal-01297261