Éditeur(s) : HAL CCSD
Résumé : Integrating ecological connectivity into marine ecosystem management and planning is important, especially in a global context of severe fish stocks depletion and growing habitat degradation. Environmental tools such as Marine Protected Areas have been proposed to protect biodiversity, restore damaged ecosystems, sustain fisheries, and rebuild overexploited stocks. The effectiveness of marine protected areas depends in part on the maintenance of connectivity between marine populations, linked by ecological processes such as larval dispersal. In this thesis, we applied a biophysical model driven by ocean currents derived from satellite altimetry to evaluate connectivity between Western Indian Ocean reefs and across the current MPA system in the Mediterranean Sea. We applied different methods of analysis such as graph-theoretic and clustering. In the Western Indian Ocean, marine connectivity analyses show that the number of connections between reefs increases with fish pelagic larval duration. It also highlights a low connectivity across the region and a high interconnectivity within several regions (Mozambique Channel, Mascarene archipelago). In the Mediterranean Sea, connectance is globally low at the regional scale. This connectance is more important in Western than Eastern Mediterranean. Moreover, the marine connectivity analyses revealed high domestic connectivity rates. Depending on the study area, priority reefs or sites for MPA implementation are proposed. Finally, implications for transboundary marine policies and regional cooperation are discussed.
Intégrer les connaissances sur la connectivité écologique dans la gestion des écosystèmes marins est essentiel, surtout dans un contexte d'appauvrissement des ressources marines et de dégradation des habitats côtiers à l'échelle mondiale. Des outils environnementaux, tels que les Aires Marines Protégées ont été mises en œuvre pour protéger la biodiversité, restaurer les écosystèmes endommagés, soutenir les pêcheries et reconstituer les stocks surexploités. Leur efficacité dépend en partie du maintien de la connectivité entre les populations marines, assurée à travers divers processus écologiques dont la dispersion larvaire. Dans le cadre de ce travail de thèse, un modèle biophysique intégrant des données de courants, issues de mesures d'altimétrie par satellite, a été utilisé pour évaluer la connectivité entre les récifs de l'océan Indien d'une part, et à travers le réseau d'AMP de Méditerranée d'autre part. Différentes méthodes d'analyse ont été utilisées, telles que la théorie des graphes et le clustering. Dans l'océan Indien occidental, l'analyse des connectivités marines montre que le nombre de connexions entre les récifs augmente avec la durée de vie larvaire des poissons. Elle met également en évidence une faible connectivité à l'échelle de la région, mais une forte inter-connectivité au sein de plusieurs sous-régions (Canal du Mozambique, Mascareignes). En Méditerranée, la connectance est globalement faible à l'échelle régionale, bien que plus importante dans le bassin occidental que le bassin oriental. L'analyse des connectivités marines montre également un taux de connectivité élevé à l'échelle d'un même pays. Selon le cas d'étude, une liste de récifs ou de sites prioritaires dans la mise en œuvre des AMP a été proposée. Enfin, les implications de ces résultats en termes de politiques transfrontalières et de coopération régionale sont discutées.
https://tel.archives-ouvertes.fr/tel-01269631

NNT : 2015LARE0003
tel-01269631
https://tel.archives-ouvertes.fr/tel-01269631
https://tel.archives-ouvertes.fr/tel-01269631/document
https://tel.archives-ouvertes.fr/tel-01269631/file/2015lare0003_ECrochelet.pdf

Éditeur(s) : Pêche thonière et dispositifs de concentration de poissons, Caribbean-Martinique, 15-19 Oct 1999
Résumé : This paper discusses the hypothesis that small tunas and the various species found in association with drifting fads (such as "mahi-mahi", rainbow runner, wahoo, etc.) may be biologically trapped by such a strong association. Massive seeding of drifting artificial fads was observed worldwide during recent years. In this hypothesis, we suggest that fads may alter some biological characteristics of epipelagic populations associated with them: migration, growth, condition factors, predation and natural mortality. As fads are most often used in the equatorial currents, they tend to exhibit zonal drift. Therefore, the associated populations would be artificially transferred from one part of the ocean to another, when they would show different movement patterns in the absence of fads. Natural logs were probably beneficial in terms of ecology and evolution, because they tend to accumulate in convergence areas, most often considered as rich forage areas. Now, fads are seeded in offshore areas, which are not necessarily favourable for tuna feeding. This apparently strong association between fishes and drifting fads may then produce an unexpected biological impact on tuna populations and their associated fauna. The plan is to test this hypothesis in the Atlantic, developing an ad hoc research programme based on tagging, biological and physiological studies, in association to an analysis of high resolution fishery data before and after the development of the fad fishery.Original Abstract: Cet article discute l'hypothese selon laquelle les petits thons et les differentes especes associees a des DCP derivants (comme les coryphenes, elagatis, thazards, etc.) pourraient etre pris dans un piege biologique resultant de cette forte association. Le deploiement massif de DCP artificiels derivants a ete constate a l'echelle mondiale au cours des dernieres annees. Dans cette hypothese, ces DCP, colonises en permanence par de grandes fractions de populations epipelagiques, pourraient modifier les caracteristiques biologiques des especes concernees: leur migration, leur croissance, leurs facteurs de condition, la predation et la mortalite naturelle. Les DCP etant plus frequemment utilises dans les courants equatoriaux, ils tendent a deriver zonalement. Ainsi, les populations associees seraient artificiellement transferees d'un bord a l'autre de l'ocean, alors qu'elles manifesteraient d'autres types de deplacements en l'absence de DCP. Les debris naturels etaient probablement benefiques sur le plan de l'ecologie et de l'evolution car ils s'accumulent dans des zones de convergence le plus souvent considerees comme des zones riches en nourriture. Maintenant, les DCP sont mouilles au large, dans des zones qui peuvent ou non etre favorables a l'alimentation des thons. Cette association apparemment forte entre poissons et DCP derivants pourrait alors causer un impact biologique inattendu sur les populations pelagiques (thons et faune accompagnante). L'objectif est de tester cette hypothese dans l'Atlantique au moyen d'un programme de recherche s'appuyant sur du marquage et des etudes biologiques et physiologiques, parallelement a une analyse des donnees de peche (tailles et CPUE, avant et apres le deploiement des DCP derivants).

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00042/15303/12636.pdf
http://archimer.ifremer.fr/doc/00042/15303/

Éditeur(s) : Amer Geophysical Union
Résumé : Intense currents having speeds between 10 and 40 cm.s(-1) from 1000 m below the surface to the bottom have been measured in the Loop Current (LC) region and in the Western Gulf of Mexico (WGM). The observations come from moored current meters sampling from the near-surface to the bottom at 3300-3500 m and from August 2008 to August 2010. Ten intermittent intensified currents are documented. These events last 10 to 30 days and take place in the region just between the surface-intensified anticyclonic-cyclonic features, as deduced from altimetry and measured currents. In the WGM, they occur between the cores of anticyclone-cyclone pairs. In the Eastern Gulf of Mexico (EGM), they occur in the Loop Current edge between its anticyclonic circulation and a neighboring cyclone. During each event, the analysis shows an increase in the barotropic contribution to the current. In the Loop Current region, these events are often associated with intensification of cyclonic vorticity in the deep layer.
Journal Of Geophysical Research-oceans (0148-0227) (Amer Geophysical Union), 2012-09-14 , Vol. 117 , N. C09014 , P. 20p.

Droits : 2012. American Geophysical Union. All Rights Reserved.
http://archimer.ifremer.fr/doc/00099/20994/18626.pdf
DOI:10.1029/2012JC007890
http://archimer.ifremer.fr/doc/00099/20994/

Éditeur(s) : Elsevier
Résumé : The fining upward trend commonly described on levees of turbidite systems can be either attributed to changes in the sediment supply (external forcing = allocyclic) or changes in the spillover processes related to the growth of the levee (internal forcing = autocyclic). However the real causes remain speculative and difficult to demonstrate. Knowledge of vertical change in flow velocity (or grain size) in turbidity currents, of the turbidity current's height, as well as the growth rate of a levee are theoretically sufficient to describe the evolution of the grain size of a leveed turbidite sequence deposited by spillover processes. A piston core (MD99-2344) retrieved on the right levee of the Petit-Rhone neofan, sampled an 8.50 m long turbidite sequence containing more than one hundred turbidite beds and showing a marked fining upward trend. With the help of two profiles describing respectively the vertical velocity [Stacey, M. and Bowen, A.J., 1988b. The vertical structure of turbidity currents and a necessary condition for self-maintenance, Journal of Geophysical Research, pp. 3543-3553.] and the vertical grain size [Migeon, S., 2000. Dunes geantes et levees sedimentaires en domaine marin profond: approche morphologique, sismique et sedimentologique. PhD Thesis, Universite Bordeaux 1, Talence, France, 288 pp.] of a turbidity current, and a simple graphical method, we test several hypotheses on the height of the turbidity current and on the grain size at the bottom of the turbidity current and we attempt to reproduce the vertical fining upward trend. Our results show that the fining upward trend of the turbidite facies can be explained by the aggradation of the turbidite levee and the gradual confinement of the turbidity currents in the channel. This is, therefore, an autocyclical phenomenon. However a high frequency variability of the grain size overprinted on the trend cannot be explained by internal forcing and is believed to be allocyclical, depending on changes to the sediment input. The vertical grain-size profile allows more realistic flow conditions to be determined and shows that the vertical velocity profile does not describe the ability of turbidity current to transport sediment. This simple graphical method allows a better understanding and quantification of the forcing on turbidite deposits and improves description of the characteristics of the turbidity currents from the grain size of the deposits.
Marine Geology (0025-3227) (Elsevier), 2006-12 , Vol. 234 , N. 1-4 , P. 191-213

Droits : 2006 Elsevier
http://archimer.ifremer.fr/doc/2006/publication-2311.pdf
DOI:10.1016/j.margeo.2006.09.019
http://archimer.ifremer.fr/doc/00000/2311/

Éditeur(s) : HAL CCSD Elsevier
Résumé : SUBSURF
Statistical sequential analysis was performed on a series of sediment cores collected from the Têt prodelta in the Gulf of Lions, northwestern Mediterranean Sea, between October 2003 and October 2004. Seabed changes during that period were correlated to hydrodynamic conditions (waves and currents) and river discharge. Low sediment supply prevents full preservation of new sediment strata on this low-accumulation prodelta located on a microtidal, storm-dominated inner shelf. Severe meteorological events caused a rapid succession of erosion and deposition phases. For example, the December 2003 flood and storm produced a flood layer deposit that persisted for 2 months with only slight transformations due to early diagenesis and/or bioturbation, until a new storm event eroded this layer. A typical sedimentary sequence was observed for the secular deposits composed of a 10-cm-thick sandy layer overlaying siltyclayey layers. These characteristic features were used to analyse the last millennia sedimentary record of the Têt prodelta. The low preservation of freshly deposited sediments and variable sedimentation rates during the last millennia period yield a sedimentary sequence formed by the outcropping of muddy prodeltaic units intersected by heterogeneous siltysandy units similar to those formed under present day hydrodynamic conditions. No flood layer was found related to catastrophic flooding of the last century in the sedimentary record. The Little Ice Age ( 1550–1850 AD) probably favoured the formation of a well-developed muddy prodelta in the mouth of the Têt River. Later on, the decrease of sediment supply by rivers due to climate change and/or human activities (damming, irrigation), and the increase of the number of high-energy storms reaching the coast, induced a coarsening of the top sediment layer on this prodelta. This modern change of the substrate is also observed in the composition of benthic biota found in the substrate
ISSN: 0025-3227

hal-00407662
https://hal.archives-ouvertes.fr/hal-00407662
DOI : 10.1016/j.margeo.2007.04.009

Éditeur(s) : Pêche thonière et dispositifs de concentration de poissons, Caribbean-Martinique, 15-19 Oct 1999 15-19 octobre 1999
Résumé : In Curacao, deep-water fads with grp surface buoys were developed and tested. The first fad was deployed in 1993. Up to now, a total of 5 fads were deployed at the following depths: 730, 685, 700, 754 and 574 metres. Changes were made to the surface buoy, resulting in an improved design, the mkii surface buoy. One fad lasted three years and one month. The main features of the design used are: the use of a sparbuoy design with constant tension on the moving chain to avoid slamming and jerking of the surface buoy; liberal use of sacrificial anodes, and maintenance to replace these anodes about once a year; the use of a short anchor chain with depth buoys, that does not touch bottom; a one-piece inverted mushroom anchor. With the grp surface buoy, a reserve buoyancy of approximately 800 kg is obtained with chain as external ballast about 610 kg of net buoyancy remains (it would seem that the reserve buoyancy needed where strong currents occur, has been underestimated in many designs). Five new grp mkii buoys are now under construction. Utilizing the experience gained with the deep-water fads, two new types of fads made of 500 mm diameter pvc tubes were designed to be used in waters of shallow and medium depth (150-400 m). One design uses a 3-m length of pvc tube, the other a 5-m tube (500 mm diameter). One fad with 3-m pvc buoy has been tested succesfully, two 5-m pvc buoys are under construction. The use of pvc results in a buoy which is substantially less expensive than a grp buoy. On the other hand, this type of buoy can probably not withstand the same forces as a grp buoy and we assume that for use in deeper waters the grp mkii buoy will still be needed.

Droits : Ifremer
http://archimer.ifremer.fr/doc/00042/15288/12674.pdf
http://archimer.ifremer.fr/doc/00042/15288/

Éditeur(s) : Elsevier
Résumé : A study of organic carbon mineralization from the Congo continental shelf to the abyssal plain through the Congo submarine channel and Angola Margin was undertaken using in situ measurements of sediment oxygen demand as a tracer of benthic carbon recycling. Two measurement techniques were coupled on a single autonomous platform: in situ benthic chambers and microelectrodes, which provided total and diffusive oxygen uptake as well as oxygen microdistributions in porewaters. In addition, sediment trap fluxes, sediment composition (Org-C, Tot-N, CaCO3, porosity) and radionuclide profiles provided measurements of, respectively input fluxes and burial rate of organic and inorganic compounds. The in situ results show that the oxygen consumption on this margin close to the Congo River is high with values of total oxygen uptake (TOU) of 4 +/- 0.6, 3.6 +/- 0.5 mmol m(-2) d(-1) at 1300 and 3100m depth, respectively, and between 1.9 +/- 0.3 and 2.4 +/- 0.2 mmol m(-2) d(-1) at 4000 m depth. Diffusive oxygen uptakes (DOU) were 2.8 +/- 1.1, 2.3 +/- 0.8, 0.8 +/- 0.3 and 1.2 +/- 0.1 mmol m(-2) d(-1), respectively at the same depths. The magnitude of the oxygen demands on the slope is correlated with water depth but is not correlated with the proximity of the submarine channel-levee system, which indicates that cross-slope transport processes are active over the entire margin. Comparison of the vertical flux of organic carbon with its mineralization and burial reveal that this lateral input is very important since the sum of recycling and burial in the sediments is 5-8 times larger than the vertical flux recorded in traps. Transfer of material from the Congo River occurs through turbidity currents channelled in the Congo valley, which are subsequently deposited in the Lobe zone in the Congo fan below 4800 m. Ship board measurements of oxygen profiles indicate large mineralization rates of organic carbon in this zone, which agrees with the high organic carbon content (3%) and the large sedimentation rate (19 mm y(-1)) found on this site. The Lobe region could receive as high as 19 mol C m(-2) y(-1), 1/3 being mineralized and 2/3 being buried and could constitute the largest depocenter of organic carbon in the South Atlantic.
Deep Sea Research Part II: Topical Studies in Oceanography (0967-0645) (Elsevier), 2009-11 , Vol. 56 , N. 23 , P. 2223-2238

Droits : 2009 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2009/publication-7316.pdf
DOI:10.1016/j.dsr2.2009.04.005
http://archimer.ifremer.fr/doc/00000/7316/

Éditeur(s) : Natl Acad Sciences
Résumé : Most marine organisms disperse via ocean currents as larvae, so it is often assumed that larval-stage duration is the primary determinant of geographic range size. However, empirical tests of this relationship have yielded mixed results, and alternative hypotheses have rarely been considered. Here we assess the relative influence of adult and larval-traits on geographic range size using a global dataset encompassing 590 species of tropical reef fishes in 47 families, the largest compilation of such data to date for any marine group. We analyze this database using linear mixed-effect models to control for phylogeny and geographical limits on range size. Our analysis indicates that three adult traits likely to affect the capacity of new colonizers to survive and establish reproductive populations (body size, schooling behavior, and nocturnal activity) are equal or better predictors of geographic range size than pelagic larval duration. We conclude that adult life-history traits that affect the postdispersal persistence of new populations are primary determinants of successful range extension and, consequently, of geographic range size among tropical reef fishes.
Proceedings Of The National Academy Of Sciences Of The United States Of America (0027-8424) (Natl Acad Sciences), 2013-10 , Vol. 110 , N. 41 , P. 16498-16502

Droits : Freely available online through the PNAS open access option.
http://archimer.ifremer.fr/doc/00161/27240/25457.pdf
DOI:10.1073/pnas.1304074110
http://archimer.ifremer.fr/doc/00161/27240/

Éditeur(s) : Wiley-blackwell
Résumé : The reef fauna connectivity of the West Indian Ocean (WIO) is one of the least studied globally. Here we use genetic analyses of the grouper Epinephelus merra (Bloch 1793) to determine patterns of connectivity and to identify barriers to dispersal in this WIO marine area. Phylogeographic and population-level analyses were conducted on cytochrome b sequences and microsatellites (13 loci) from 557 individuals sampled in 15 localities distributed across the West Indian Ocean. Additional samples from the Pacific Ocean were used to benchmark the WIO population structure. The high level of divergence revealed between Indian and Pacific localities (of about 4.5% in sequences) might be the signature of the major tectonic and climatic changes operating at the Plio-Pleistocene transition, congruently with numerous examples of Indo-Pacific speciation. In comparison, the E. merra sequences from the Indian Ocean constitute a monophyletic clade with a low average genetic distance (d < 0.5%). However both genetic markers indicated some structure within this ocean. The main structure revealed was the isolation of the Maldives from the WIO localities (a different group signature identified by clustering analysis, great values of differentiation). Both marker types reveal further significant structure within the WIO, mainly the isolation of the Mascarene Islands (significant AMOVA and isolation-by-distance patterns) and some patchy structure between the northernmost localities and within the Mozambique Channel. The WIO genetic structure of E. merra appeared congruent with main biogeographic boundaries and oceanographic currents.
Marine Ecology-an Evolutionary Perspective (0173-9565) (Wiley-blackwell), 2015-09 , Vol. 36 , N. 3 , P. 447-461

Droits : 2014 Blackwell Verlag GmbH
http://archimer.ifremer.fr/doc/00189/30046/28566.pdf
DOI:10.1111/maec.12153
http://archimer.ifremer.fr/doc/00189/30046/

Éditeur(s) : Yale University
Résumé : Data from a hydrographic section carried out in January-March 1994 offshore from the eastern coast of South America from 50S to 10N, are used to quantify the full-depth exchanges of water between the western boundary currents and the ocean interior. In the upper and intermediate layers, the westward transport associated with the southern branch of the South Equatorial Current was 49 Sv at the time of the cruise. The transports of the central and northern branches in the upper 200 m were 17 Sv and 12 Sv, respectively. After subtraction of the parts that recirculate in the subtropical, subequatorial, and equatorial domains, the fraction of the South Equatorial Current that effectively contributes to the warm water export to the North Atlantic is estimated at 18 Sv. The poleward boundary of the current southern branch is at 31S through the whole thickness of the subtropical gyre, but the latitude of the northern boundary varies from 7 degrees 30'S at the surface to 27S at 1400 m depth. The estimated latitude of its bifurcation into the Brazil Current and North Brazil Undercurrent also varies downward from about 14S at the surface to 28S at a depth of 600 m.In the North Atlantic Deep Water, eastward flows exceeding 10 Sv are observed at 3 degrees -4 degrees of latitude in both hemispheres, at 10S, and at 34S-30S. Between 4S and 17S, a net westward flow with an estimated transport of 19 Sv reinforces the southward deep western boundary current. Cyclonic circulations of Antarctic Bottom Water along the western boundaries of the Argentine and Brazil basins have amplitudes of 15 Sv and 13 Sv, respectively, exceeding those of the interbasin exchanges. The net alongshore transport of this water mass between the hydrographic section and the continental slope reverses to a southward direction from 13S to 27S, probably in relation with an eastward shift of the equatorward near-bottom boundary current at these latitudes.
Journal of Marine Research (0022-2402) (Yale University), 2000-11 , Vol. 58 , N. 6 , P. 1007-1039

Droits : 2000 Yale University
http://archimer.ifremer.fr/doc/2000/publication-803.pdf
DOI:10.1357/002224000763485782
http://archimer.ifremer.fr/doc/00000/803/

Éditeur(s) : Gauthier-Villars
Résumé : Pegasus current measurements carried out along a section located off French Guiana are presented; the section was repeated five times from September 1989 to June 1991 during the NOE (region Nord-Ouest equatoriale)/STACS (Sub Tropical Atlantic Climate Studies) cruises on board the NOAA (National Oceanographic and Atmospheric Administration) research vessels. The data (vertical and horizontal distributions) show, as suggested by earliest observations, the presence of different currents. At the surface, and in winter, the North Brazil Current (NBC) flows northwestward (positive), is strong (120 cm/s), confined in the first 250 m, coastally trapped (within 250 km) and fed by offshore waters; in summer the NBC strengthens (the velocity increases to 150 cm/s), vertically extends (down to 800 m) and veers offshore; the mean NBC mass flux computed from all the sections available is 34 +/- 9 Sv with absolute maximum and minimum respectively in September 1989 (81 +/- 4 Sv) and February 1990 (13 +/- 1 Sv). Subsurface, a southeastward (negative) undercurrent (herein after named Western Boundary UnderCurrent) is present in winter-spring and located in the layer 250-800 m with similar velocities in February 1990 (- 33 cm/s) and June 1991 (- 29 cm/s) but with largest vertical and horizontal extensions in the latter case; in summer (September 1989 and September 1990) this undercurrent is absent; the mean mTBUC mass flux is - 9 +/- 3 Sv; the maximum is observed in June 1991 (- 19 +/- 2 Sv) and the minimum in February 1990 (- 3 +/- 0.4 Sv) and January 1991 (- 5 +/- I Sv). Deeper, the equatorward Deep Western Boundary Current is trapped against the continental shelf (within 100 km of the shelf break), extends downward from 1 200 to 3 000 m depth with the velocity core centred in the 1 700-2 000 m layer, is maximum (- 50 cm/s) in spring-summer and minimum (- 23 cm/s) in winter; the absolute velocity (- 92 cm/s) has been recorded at 2 000 m depth in September 1989 suggesting a strong variability at this level; the mean equatorward DWBC mass flux is - 30 +/- 14 Sv with absolute maximum and minimum respectively in September 1989 (- 59 +/- 6 Sv) and September 1990 (- 7 +/- 1 Sv). The Integrated Mass, Temperature and Salt Fluxes (IMF, ITF and ISF) with the cumulated errors, computed across the whole section and down to 3 000 m depth for the September 1990, January 1991 and June 1991 cruises, are all positive in September 1990 (respectively 1.9 +/- 19 Sv, 3.1 +/- 30.1 PW and 74 +/- 1 845 Tt/s) but all negative both in January 1991 (- 13.3 +/- 17.0 Sv, - 15.6 +/- 26.5 PW and - 478 +/- 1594 Tt/s) and June 1991 (- 3.8 +/- 10.1 Sv, - 4.0 +/- 16.3 PW, - 130 +/- 989 Tt/s) showing a strong variability between the summer and winter periods. The mean IMF, ITF and ISF values (respectively - 5.1 +/- 46.4 Sv, - 5.2 +/- 73 PW and - 178 +/- 4428 Tt/s) are high and negative, indicating the large influence of the DWBC and the associated North Atlantic Deep Water (upper part) off French Guiana at 5 degrees N.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1994 , Vol. 17 , N. 2 , P. 143-157

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00098/20881/18495.pdf
http://archimer.ifremer.fr/doc/00098/20881/

Éditeur(s) : Society for Sedimentary Geology
Résumé : The Kramis deep-sea fan extends over 45 km at the base of the western Algerian continental slope between 2000 and 2550 m water depth and covers an area of approximately 1200 km2. The Kramis Fan was initiated after Messinian time, evolved during the Plio-Quaternary, and, is still active, as proved by submarine cable breaks during the 1954 Orléansville earthquake. The Kramis Fan is fed by two perpendicular canyons: the Kramis Canyon and the Khadra Canyon, merging in a single E–W-oriented channel confined at the foot of the slope. It is strongly asymmetric with a super-developed levee on the right-hand side of the channel, the Kramis Ridge. Based on recent multibeam, side-scan sonar, and sediment core data (Maradja, 2003 and 2005, Prisma, 2004, and Prisme, 2007 cruises), we describe the morphology and internal structure of the fan and particularly the sediment ridge, showing marked lateral changes in the sediment-wave morphology and their association with a series of large scours in the intermediate part of the ridge aligned in the continuity of the Khadra Canyon direction. Overall, the Kramis Ridge is formed by turbidity currents overspilling the ridge crest, which is 100 m above the channel floor, with two exceptions. In the distal part of the ridge the subdued ridge-crest height probably causes continuous overspill, testified by sediment waves migrating parallel to the channel. The scours occur in the intermediate part of the ridge where the ridge height is only 50–60 m; scours are interpreted as the result of cyclic steps due to flow stripping of currents provided by the intersection of the Khadra Canyon with the Kramis Canyon and Channel system. The scours probably postdate the main growth of the Kramis Ridge and induce the local erosion of the ridge, which could correspond to a new channel initiation cutting the ridge. The superposition or the interaction of flows with different directions is responsible of the amplification of the size of the sediment waves with erosional downside flanks and their transformation in scours. The Kramis Fan provides a clear example of flow interaction to explain the presence of large sediment waves and scours on modern submarine fans.
SEPM Special Publication (1060-071X) (Society for Sedimentary Geology), 2012 , Vol. 99 , P. 293-308

Droits : 2012 SEPM (Society for Sedimentary Geology)
http://archimer.ifremer.fr/doc/00129/24021/21978.pdf
http://archimer.ifremer.fr/doc/00129/24021/

Éditeur(s) : Université de la Réunion
Résumé : The green turtle (Chelonia mydas) is an emblematic species of marine life. However, nowadays it is subject to many threats (poaching, by-catch). Even if there is deep growing measures for its protection, the green turtle still is an endangered species and it is listed in Appendix I of Washington Convention (CITES). In order to elaborate efficient conservation and management plans, perfect knowledge of green turtle biology, but also of its population structure and their characteristics, are needed. In this thesis, we have assessed genetic structure of green turtle populations in the South-Western Indian Ocean by using genetic tools. In all, 1551 tissue samples have been collected from our study zone and from our control site French Polynesia (37 samples). All kinds if individuals were sampled (except males in reproductive phase) from 15 sampling sites including nesting, foraging, and immature development site. We used both control region of mitochondrial DNA and 6 microsatellite loci to better infer maternal and paternal lineages. We identified 29 haplotypes in the South-Western Indian Ocean. They are distributed in 3 independent and highly divergent clades, including one composed with haplotypes from Atlantic Ocean. For 7 of these haplotypes, it was the first time they were detected in the study zone. Fifteen haplotypes were previously undescribed, distributed in all the 3 clades. These new haplotypes seem to be specific to the South-Western Indian Ocean, which is then an original zone. Besides, we found a high allelic richness. These results show the South-western Indian Ocean is rich and very diversified. This region plays an important role in the global diversity of the species. The South-Western Indian Ocean is one of the two contact zones presently known between the two metapopulations of green turtles (Atlantic-Mediterranean and Indo-Pacific). This contact induces a genetic cline based on CM8 (Atlantic) and C3 (Indo-Pacific) haplotype frequencies. Analysis of the microsatellite differentiation between individuals provides evidence of genetic exchanges between the two metapopulations in the region. The South-Western Indian Ocean participates to green turtle global genetic mixing. Studying the influence of several intrinsic and extrinsic factors on population structuring provides useful information for management plan elaboration. We found no significant difference between genetic structures of foraging females and males, contrary to immature turtles which seem to be organised in 'regional pools'. This organisation could be due to both immature natal homing and influence of oceanic currents. High mitochondrial differentiation of nesting females and low global microsatellite differentiation of our samples indicate male-mediated gene flow among populations of the study zone. The genetic composition of a sampling site presents no significant variation along the year, even if we could notice some trends. Nevertheless, it can be significantly different from a year to an other one. This may result from alternation of distinct populations on the same site. We noticed different evolution in 10 or 20 years of the genetic composition depending on the sampling site. Geographic distance seems not to have significant influence on population structuring concerning microsatellite markers. Nesting females of Saziley Beach (Mayotte Island, Comoros Archipelago) present genetic divergence from females nesting in the two other sampled beaches of this island. The observed population structure shows no contradiction with the organisation of oceanic currents in the South-Western Indian Ocean. Comparing the results from the two genetic markers used, we identified 8 genetic differentiated clusters of turtles in the study zone and at least 6 distinct populations. These clusters constitute 8 potential management units (MUs) which could serve as basis in the elaboration of conservation and management plans.
La tortue verte (Chelonia mydas) constitue l'un des espèces emblématiques de la vie marine, pourtant de nombreuses menaces pèsent de nos jours encore sur sa survie (braconnage, captures accidentelles). Ainsi, malgré l'essor de mesures de protection menées à travers pour sa sauvegarde, la tortue verte constitue une espèce 'en danger d'extinction' et figure dans l'Annexe I de la Convention de Washington (CITES). Afin d'élaborer des plans de gestion et de conservation qui soient efficaces, il est important d'avoir une parfaite connaissance de la biologie de la tortue verte, mais aussi de la structure de ses populations et de leurs caractéristiques. C'est dans ce cadre que s'inscrit la présente étude. L'objectif de cette étude était d'acquérir des connaissances sur la structure des populations de tortues vertes dans le sud-ouest de l'océan Indien grâce à l'utilisation de l'outil génétique. Au total, 1551 échantillons de tissu ont été collectés dans la zone d'étude et dans notre site témoin la Polynésie française (37 échantillons). Toutes les catégories d'individus ont été échantillonnées (excepté les mâles en phase de reproduction) et les 15 sites d'échantillonnage comprennent à la fois des sites de ponte, d'alimentation et de développement pour les immatures. Deux types de marqueurs ont été utilisés : la région contrôle de l'ADN mitochondrial et 6 loci microsatellites, afin d'appréhender au mieux l'apport des lignées maternelles et paternelles. Nous avons pu mettre en évidence la présence dans le sud-ouest de l'océan Indien de 29 haplotypes distincts, appartenant à trois clades fortement divergents dont l'un constitué d'haplotypes originaires de l'océan Atlantique. Parmi ces haplotypes, 7 ont été détectés pour la première fois dans la zone d'étude, et 15 autres n'ont jamais été précédemment décrits chez cette espèce. Ils sont présents dans chacun des 3 clades d'haplotypes. Ces nouveaux haplotypes semblent spécifiques à la région, et en font une zone originale. On observe par ailleurs une grande richesse allélique dans les effectifs analysés. Ces résultats montrent que le sud-ouest de l'océan Indien est une zone riche et très diversifiée. Cette région joue un rôle important dans la diversité génétique globale de l'espèce. Le sud-ouest de l'océan Indien constitue l'une des deux seules zones connues à l'heure actuelle de contact entre les deux métapopulations de tortues vertes (Atlantique-Méditerranée et Indo-Pacifique). Ce contact a entraîné la formation d'un cline génétique portant principalement sur les fréquences relatives des haplotypes CM8 (Atlantique) et C3 (Indo-Pacifique). Les résultats obtenus lors de l'analyse microsatellite de la différenciation entre les individus originaires des deux métapopulations montrent que le sud-ouest de l'océan Indien constitue une zone d'échanges génétiques entre les deux métapopulations, participant au brasage génétique de l'espèce. L'étude de facteurs, intrinsèques et extrinsèques, pouvant influencer la structuration des populations apportent de nombreuses informations qui pourraient s'avérer utiles lors de l'élaboration de plans de gestion. La structure des femelles et des mâles en alimentation ne diffère pas, contrairement à celle des immatures qui semble s'organiser en 'pools régionaux' qui seraient le fruit de l'interaction d'un comportement de philopatrie et d'une influence des courants océaniques. La forte différenciation mitochondriale des femelles en ponte et la très faible différenciation microsatellite observée à l'échelle de la région, indiquent l'existence de flux de gènes via les mâles. La composition génétique d'un site ne varie pas de manière significative au cours de l'année. Par contre, elle peut varier d'une année à l'autre, signifiant l'alternance dans certains sites de ponte de plusieurs populations distinctes. L'évolution de la composition génétique d'un groupe, au cours de 10 ou 20 ans, diffère selon le site considéré. La distance ne semble pas influencer de manière significative la structuration des populations au niveau microsatellite. Les femelles en ponte sur la plage de Saziley (Mayotte) diffèrent génétiquement de celles pondant sur les deux autres plages de l'île. La structure observée des populations est en accord avec l'organisation des courants océanique dans la région. La confrontation des résultats obtenus à partir des deux marqueurs génétiques utilisés, permet la détermination de 8 ensembles génétiquement différenciés dans la zone d'étude et l'identification d'au moins 6 populations distinctes. Ces ensembles constituent autant d'unités de gestion (MUs) potentielles qui pourront servir de base à l'élaboration de plans de gestion et de conservation.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2007/these-3532.pdf
http://archimer.ifremer.fr/doc/00000/3532/

Éditeur(s) : Amer Geophysical Union
Résumé : In the Atlantic Ocean, the northward export of warm surface water is compensated by a southward flow of cold North Atlantic Deep Water (NADW). The NADW is transported southward along the American continental margin within the Deep Western Boundary Current (DWBC). Some tracer and float observations have shown that part of the DWBC water flows eastward along the equator. Here we present three meridional velocity sections which give an instantaneous image of the top-to-bottom zonal circulation along the equatorial Atlantic. They reveal the presence of Equatorial Deep Jets (EDJs) between 1 degrees 30'N and 1 degrees 30'S, alternating eastward-westward currents with short vertical scale, surrounded by columns of eastward currents (the Extra Equatorial Jets or EEJs) at 2 degreesN and 2 degreesS. In addition to direct velocity measurements, tracer distributions give indications of water-mass feeding of the EDJs and EEJs by the DWBC.
Geophysical Research Letters (0094-8276) (Amer Geophysical Union), 2001-03 , Vol. 28 , N. 5 , P. 819-822

Droits : 2001 AGU
http://archimer.ifremer.fr/doc/00000/10369/9567.pdf
http://archimer.ifremer.fr/doc/00000/10369/

Éditeur(s) : HAL CCSD American Association for the Advancement of Science
Résumé : International audience
Sediments cored along the southwestern Iberian margin during Integrated Ocean Drilling Program Expedition 339 provide constraints on Mediterranean Outflow Water (MOW) circulation patterns from the Pliocene epoch to the present day. After the Strait of Gibraltar opened (5.33 million years ago), a limited volume of MOW entered the Atlantic. Depositional hiatuses indicate erosion by bottom currents related to higher volumes of MOW circulating into the North Atlantic, beginning in the late Pliocene. The hiatuses coincide with regional tectonic events and changes in global thermohaline circulation (THC). This suggests that MOW influenced Atlantic Meridional Overturning Circulation (AMOC), THC, and climatic shifts by contributing a component of warm, saline water to northern latitudes while in turn being influenced by plate tectonics.
ISSN: 0036-8075

hal-01054316
https://hal.archives-ouvertes.fr/hal-01054316
DOI : 10.1126/science.1251306

Éditeur(s) : Elsevier Science Bv
Résumé : The Var turbiditic system located in the Ligurian Sea (SE France) is an intermediate mud/sand-rich system. The particularity of the Var deep-sea fan is its single channel with abrupt bends and its asymmetric and hyper-developed levee on the right hand side: the Var Sedimentary Ridge. Long-term sediment accumulation on the Var Sedimentary Ridge makes this an ideal target for studying the link between onshore climate change and deep-sea turbidite stratigraphy. This paper focuses on the establishment of the first detailed stratigraphy of the levee, which is used to analyze the timing of overbank deposition throughout the last deglaciation. Main results indicate that high variability in turbidite frequencies and deposition rates along the Var Sedimentary Ridge are determined by two main parameters: 1) the progressive decrease of the levee height controlling the ability of turbidity currents to spill out from the channel onto the levee, and 2) climatic variations affecting the drainage basin, in particular changes in glacial condition since late Last Glacial Maximum to early Holocene. Compared to other deep-water areas, this study confirms the ability of turbiditic systems to record past climatic events on millennial timescales, and underlines the influence of European deglaciation on the observed decrease in turbidite activity in the Var canyon. The presence of a very narrow continental shelf and a single, large channel-levee system makes the Var Sedimentary Ridge a unique example of climate-controlled turbiditic accumulations. (C) 2010 Elsevier B.V. All rights reserved.
Marine Geology (0025-3227) (Elsevier Science Bv), 2011-01 , Vol. 279 , N. 1-4 , P. 148-161

Droits : 2010 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00030/14104/11370.pdf
DOI:10.1016/j.margeo.2010.10.021
http://archimer.ifremer.fr/doc/00030/14104/

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : International audience
Tight control of basal cytosolic Ca(2+) concentration is essential for cell survival and to fine-tune Ca(2+)-dependent cell functions. A way to control this basal cytosolic Ca(2+) concentration is to regulate membrane Ca(2+) channels including store-operated Ca(2+) channels and secondary messenger-operated channels linked to G-protein-coupled or tyrosine kinase receptor activation. Orai, with or without its reticular STIM partner and Transient Receptor Potential (TRP) proteins, were considered to be the main Ca(2+) channels involved. It is well accepted that, in response to cell stimulation, opening of these Ca(2+) channels contributes to Ca(2+) entry and the transient increase in cytosolic Ca(2+) concentration involved in intracellular signaling. However, in various experimental conditions, Ca(2+) entry and/or Ca(2+) currents can be recorded at rest, without application of any experimental stimulation. This led to the proposition that some plasma membrane Ca(2+) channels are already open/activated in basal condition, contributing therefore to constitutive Ca(2+) entry. This article focuses on direct and indirect observations supporting constitutive activity of channels belonging to the Orai and TRP families and on the mechanisms underlying their basal/constitutive activities.
ISSN: 0175-7571

hal-01528591
https://hal.archives-ouvertes.fr/hal-01528591
DOI : 10.1007/s00249-017-1216-8
PUBMED : 28516266

Éditeur(s) : Gauthier-Villars
Résumé : Long tropical instability waves are described at around 3-4 degrees N based on results of a simulation performed with a general circulation model for the Atlantic Ocean. This description is in agreement with earlier observations of organized undulations of the summer thermal front associated with anti-cyclonic eddies propagating westward at 30-40 km/day along 3-4 degrees N from 10 to 40 degrees W through the Atlantic basin. However, the simulation indicated the presence of long waves in early boreal winter. In this respect, satellite observations during short cold events in winter show thermal front undulations similar to those associated with long wave propagations. The simulation clearly demonstrated large vertical movements between the surface and a depth of 70 m, associated with anti-cyclonic eddies at around 3 degrees N. These vertical movements could commonly reach the thermocline in the central part of the Atlantic basin (10-20 degrees W). In this region, long instability waves could subsequently affect biological production by ''eddy pumping''. During the PIRAL cruise at 4 degrees N-20 degrees W in June 1986, remarkably high chlorophyll concentrations (the highest values in our data bank for the equatorial Atlantic and typical of a very productive zone) were associated with currents similar to those of an anticyclonic eddy and characterized by a surface temperature distribution typical of the long instability wave pattern. These high chlorophyll concentrations may have resulted from ''eddy pumping'' and/or strong meridian advection since each of these mechanisms is associated with long instability waves.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1994 , Vol. 17 , N. 6 , P. 585-596

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00099/21034/18660.pdf
http://archimer.ifremer.fr/doc/00099/21034/

Éditeur(s) : HAL CCSD EDP Sciences
Résumé : International audience
We show first results of 3D simulation of sea currents in a realistic context. We use the full Navier-Stokes equations for incompressible viscous fluid. The problem is solved using a second order incremental projection method associated with the finite volume of the staggered (MAC) scheme for the spatial discretization. After validation on classical cases, it is used in a numerical simulation of the Pointe à Pitre harbour area. The use of the fictious domain method permits us to take into account the complexity of bathymetric data and allows us to work with regular meshes and thus preserves the efficiency essential for a 3D code.
ISSN: 1270-900X
Guidel, France

hal-00728894
https://hal.archives-ouvertes.fr/hal-00728894
DOI : 10.1051/proc/201235025

Éditeur(s) : Elsevier
Résumé : The Danube Canyon is a large shelf-indenting canyon that has developed seaward of the late Pleistocene paleo-Danube valley. Mechanisms of canyon evolution and factors that controlled it are revealed by analyzing the morphology and the sedimentary structure of the canyon, as well as the main features of the continental margin around the canyon. This is based on investigation by swath bathymetry in the canyon area combined with different types of seismic data. The canyon is a major erosional trough with a flat bottom cut by an entrenched axial thalweg. The thalweg path varies from highly meandering to fairly straight in relation to the local gradient. Segments of the canyon are characterized by specific morphology, orientation and gradient along the axial thalweg. We interpret these segments in terms of canyon maturity. The sedimentary structure of the canyon documents an older phase of erosion followed by partial infilling, and thus attests for repeated cycles of canyon development. Canyon morphology is interpreted as a result of erosive sediment flows along the entrenched axial thalweg that caused downcutting into the canyon bottom and instability of the canyon walls, and hence enlargement of the canyon and expansion by headward erosion. During the last lowstand level of the Black Sea the canyon was located in an area of high sediment supply close to the paleo-Danube River mouths. This is indicated by buried fluvial channels on the shelf and by a wave-cut terrace associated with a water level situated about - 90 m below the present level. We infer that erosive flows in the canyon resulted from hyperpycnal currents at the river mouths, probably favored by the low salinity environment that characterized the Black Sea during lowstand times. Other mechanisms could have contributed to trigger sediment failure along the canyon, such as instability related to the presence of shallow gas, or the effect of a deep fault.
Marine Geology (0025-3227) (Elsevier), 2004-05 , Vol. 206 , N. 1-4 , P. 249-265

Droits : 2004 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2004/publication-476.pdf
DOI:10.1016/j.margeo.2004.03.003
http://archimer.ifremer.fr/doc/00000/476/