Éditeur(s) : HAL CCSD Geological Society
Résumé : Extensional basins often evolve both with the generation of normal faults at all scales, and with tilting in the hanging walls and footwalls of major structures. This paper examines the effect of regional tilting on the development of normal fault arrays in an anisotropic sequence, using the asymmetric Lodève Basin, France, as a case study. The orientation range of normal faults is found not to match that expected by continued symmetric generation of conjugate normal faults during tilting. Instead, continued generation of new faults preferentially occurred for faults dipping opposite to the direction of tilt, with propagation perpendicular to bedding. The presence of early bedding-perpendicular joints in the competent sandstone units aided propagation of these faults during tilting and this preferential asymmetric development. Bedding-parallel slip surfaces were activated as normal faults during the later stages of bedding tilting, showing complex interaction patterns with later faults downthrowing in the direction opposite to bedding tilting. Hence knowledge of the timing between tilting of the strata and deformation helps in evaluating the likely complexity of fault arrays at subseismic scales in extensional basins, and may also help in understanding the evolution of fault systems in tilted normal fault blocks at the reservoir scale.
ISSN: 0016-7649

hal-00404753
https://hal.archives-ouvertes.fr/hal-00404753
DOI : 10.1144/0016-76492006-047

Éditeur(s) : HAL CCSD
Résumé : International audience
In the frame of the Africa-Europe convergence, the Mediterranean tectonic system presents a complex interaction between subduction rollback and upper-plate deformation during the Tertiary. The western Mediterranean is characterized by the exhumation of the largest subcontinental mantle massif worldwide (the Ronda Peridotite) and a narrow arcuate geometryacross the Gibraltar arc within the Betic-Rif belt (the internal part being called the Alboran domain), where the relationship between slab dynamics and surface tectonics is not well understood. New structural and geochronological data are used to argue for 1/ hyperstrechting of the continental lithosphere allowing extensional mantle exhumation to shallow depths, followed by 2/ lower miocene thrusting. Two Lower Miocene E-W-trending strike-slip corridors played a major role in the deformation pattern of the Alboran Domain, in which E-W dextral strike-slip faults, N60°-trending thrusts and N140°-trending normal faults developed simultaneously during dextral strike-slip simple shear. The inferred continuous westward translation of the Alboran Domain is accommodated by a major E-W-trending lateral ramp (strike-slip) and a N60°-trending frontal thrust. At lithosphere-scale, we interpret the observed deformation pattern as the upper-plate expression of a lateral slab tear and of its westward propagation since Lower Miocene. The crustal emplacement of the Ronda Peridotites occurred at the onset of this westward motion.The Miocene tectonics of the western Alboran is therefore marked by the inversion of a continental rift, triggered by shortening of the upper continental plate and accommodated by E-W dextral strike-slip corridors. During thrusting and westward displacement of the Alboran domain with respect to Iberia, the hot upper plate, which involved the previously exhumed sub-continental mantle, underwent fast cooling.
AGU Fall Meeting 2015
San Francisco, United States

insu-01242043
https://hal-insu.archives-ouvertes.fr/insu-01242043

Éditeur(s) : HAL CCSD Elsevier
Résumé : Integrated field, LA-MC-ICP-MS geochronology and geochemical data from the Novo Oriente Group have been investigated in order to determine their provenance and possible tectonic setting. This group in the southwestern portion of the Ceara Central Domain, is a well-preserved metavolcanosedimentary sequence, in part exhalative, composed of two distinct formations. The proximal coastal Bonsucesso Formation comprises mainly quartzite and minor basic metavolcanic rocks and is in gradational contact with the distal Caranbas Formation which constitutes a metapelitic-volcanic-carbonate sequence, including metabasic rocks with pillow structure and sheared serpentinized ultrabasic rocks. The youngest detrital zircon found in the quartzite of the Bonsucesso Formation yielded an age of ca. 2.1 Ga and well-defined peaks around 2.2.2.3-2.4 and 2.5 Ga. In addition, zircons from a related metabasalt yielded an upper intercept age of 2083 +/- 28 Ma. We interpret the zircons found in this metabasalt as inherited from the host quartzite. This fact is supported by depleted-mantle Nd model ages (T-DM age) from correlated metabasic and metaultrabasic rocks from other places in the Novo Oriente sequence, which have yielded ages between 1.36 and 1.69 Ga, that is younger than the zircon age obtained in the metabasalt extruded over the Bonsucesso quartzite. Geochemical data of the metasedimentary rocks from the Caraubas Formation indicates a provenance composed of a mixture of felsic and intermediate sources typical of old stable cratons and older continental roots of active tectonic settings. The rocks of the Crania (Medio Coreau Domain) and Bacaja Complexes (southeastern Amazonian Craton) exposed to the west of the Novo Oriente Group, and largely covered by the Phanerozoic Parnaiba intracratonic basin, are the most likely source rocks. Since the precise age of the Novo Oriente Group is not yet well constrained, two distinct settings may be proposed: (1) it may represent a more evolved basin developed from extensional processes during the Mesoproterozoic (ca. 1.5-1.3 Ga); and (2) it could constitute part of the passive margin systems developed during the break-up of the Rodinia crown copyright supercontinent (ca. 0.95-0.8 Ga), associated with a pre-Brasiliano/Pan-African ocean (e.g. Pharusian Ocean). Crown.
ISSN: 1342-937X

hal-00512825
https://hal.archives-ouvertes.fr/hal-00512825
DOI : 10.1016/j.gr.2010.02.001

Éditeur(s) : HAL CCSD Springer International Publishing
Résumé : Industrial agriculture has clearly reached its limits. Industrial agriculture is not able anymore to satisfy the basic needs of the growing worldwide population while ensuring the conditions of reproduction of natural assets. New production models have to be designed to protect and reclame polluted and degraded agricultural areas. Agroecology is considered as a promising way to achieve ecologically-intensive agrosystems, since the seminal contribution of Altieri in 1995. Nevertheless agroecology has not fully emerged as a scientific discipline yet. Agroecology is more that a traditional scientific discipline because agroecology breaks the frontiers between biophysical sciences and social sciences. This chapter reviews the roots and evolution of agroecology in the first section. Here we propose a mathematical theory of viability to handle uncertainty and complexity within agrosystems. This theory allows to define a kern of viability in which the agrosystem stay viable in the long term (section “Scientific stakes: New frontiers”). However, agroecological innovations create new uncertainties and controversies that must be solved. Some solutions can be found individually while other solutions must by co-constructed using innovative collective actions and hydrid forums (Callon et al. 2001, section “Scientific controversy and uncertainty”). Such collective knowledge makes agroecology as the starting point of a representative democracy by setting up adaptive governance on territories (section “How to manage agrosystems in the context of global changes?”).
Sustainable Agriculture Reviews 14

ISBN : 978-3-319-06015-6
hal-01195372
https://hal.archives-ouvertes.fr/hal-01195372
DOI : 10.1007/978-3-319-06016-3_1
PRODINRA : 270790

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Tectonically controlled landforms develop morphologic features that provide useful markers to investigate crustal deformation and relief growth dynamics. In this paper, we present results of morphotectonic experiments obtained with an innovative approach combining tectonic and surface processes (erosion, transport, and sedimentation), coupled with accurate model monitoring techniques. This approach allows for a qualitative and quantitative analysis of landscape evolution in response to active deformation in the three end-member geological settings: compression, extension, and strike–slip.Experimental results outline first that experimental morphologies evolve significantly at a short time scale. Numerous morphologic markers form continuously, but their lifetime is generally short because erosion and sedimentation processes tend to destroy or bury them. For the compressional setting, the formation of terraces above an active thrust appears mainly controlled by narrowing and incision of the main channel through the uplifting hanging-wall and by avulsion of deposits on fan-like bodies. Terrace formation is irregular even under steady tectonic rates and erosional conditions. Terrace deformation analysis allows retrieving the growth history of the structure and the fault slip rate evolution. For the extensional setting, the dynamics of hanging-wall sedimentary filling appears to control the position of the base level, which in turn controls footwall erosion. Two phases of relief evolution can be evidenced: the first is a phase of relief growth, and the second is a phase of upstream propagation of topographic equilibrium that is reached first in the sedimentary basin. During the phase of relief growth, the formation of triangular facets occurs by degradation of the fault scarp, and their geometry (height) becomes stationary during the phase of upstream propagation of the topographic equilibrium. For the strike–slip setting, the complex morphology of the wrench zone, composed of several interacting fault segments, enhances the interactions with the drainage network. Because of the widening of the main fault zone toward the surface, a significant amount of distributed deformation is observed along the wrench zone. Locally, where two terminations of fault segments interact, less than a quarter of the far field displacement can remain measurable using fault offsets, leading to a systematic underestimation of the real fault slip rate.These different experimental examples illustrate the great potential of the approach coupling deformation mechanisms and erosion–transport–sedimentation processes to investigate qualitatively and quantitatively the morphotectonic evolution of tectonically controlled landscapes.
ISSN: 0169-555X

hal-01243587
https://hal.archives-ouvertes.fr/hal-01243587
DOI : 10.1016/j.geomorph.2015.02.011

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Mediterranean geodynamic system is an exceptional natural laboratory to study the complexities of back-arc extension during subduction rollback. Corsica is a key locality that recorded the Alpine subduction-collision history followed by 30 Ma of the Apennines slab rollback, responsible for the successive opening, from West to East, of the Liguro-Provençal basin and the Tyrrhenian Sea. The overall strain pattern of the Alpine metamorphic units of Alpine Corsica is studied through a synthesis of i) available geological maps, ii) geochronological data and iii) newly acquired structural data relative to successive events of ductile and brittle extension, Three main stages of extension are recorded: 1/ Syn-metamorphic Oligocene extension accommodated by N140° trending ductile shear zones, that correspond to the reactivation of a major Alpine thrust; 2/ Burdigalian ramp-flat extension with N60°-70° trending fault zones that controlled the deposition of onshore piggy-back basins (e.g. St Florent basin), and 3/ Serravalian N-S trending fault zones. From a geodynamical point of view, these successive extensional deformations in Alpine Corsica can be correlated to the history of the Apennines slab rollback. The two first stages are related to a southeastward rollback of the Appennines slab that successively triggered: 1/ Continental rifting in Oligocene leading to the opening of the Liguro-Provençal basin and 2/ Burdigalian extension with N60°-70° trending fault zone, oblique to the Alpine thrust that, after a counterclockwise rotation of the Corso-Sardinian block, became unable to accommodate extension. Finally, the third stage that gave NS-trending fault zones developed in Serravalian, at the onset of Tyrrhenian rifting, related to an eastward rollback of the Apennines slab, as a response of slab tearing in Sicily.
ISSN: 0040-1951

insu-01424859
https://hal-insu.archives-ouvertes.fr/insu-01424859
https://hal-insu.archives-ouvertes.fr/insu-01424859/document
https://hal-insu.archives-ouvertes.fr/insu-01424859/file/gueydan-tectonoph-2017.pdf
DOI : 10.1016/j.tecto.2016.12.028

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
No major earthquake occurred in North Chile since the 1877 Mw 8.6 subduction earthquake that produced a huge tsunami. However, geodetic measurements conducted over the last decade in this area show that the upper plate is actually deforming, which reveals some degree of locking on the subduction interface. This accumulation of elastic deformation is likely to be released in a future earthquake. Because of the long elapsed time since 1877 and the rapid accumulation of deformation (thought to be 6-7 cm yr−1), many consider this area is a mature seismic gap where a major earthquake is due and seismic hazard is high. We present a new Global Positioning System (GPS) velocity field, acquired between 2008 and 2012, that describes in some detail the interseismic deformation between 18°S and 24°S. We invert for coupling distribution on the Nazca-South America subduction interface using elastic modelling. Our measurements require that, at these latitudes, 10 to 12 mm yr−1 (i.e. 15 per cent of the whole convergence rate) are accommodated by the clockwise rotation of an Andean block bounded to the East by the subandean fold-and-thrust belt. This reduces the accumulation rate on the subduction interface to 56 mm yr−1 in this area. Coupling variations on the subduction interface both along-strike and along-dip are described. We find that the North Chile seismic gap is segmented in at least two highly locked segments bounded by narrow areas of weak coupling. This coupling segmentation is consistent with our knowledge of the historical ruptures and of the instrumental seismicity of the region. Intersegment zones (Iquique, Mejillones) correlate with high background seismic rate and local tectonic complexities on the upper or downgoing plates. The rupture of either the Paranal or the Loa segment alone could easily produce a Mw 8.0-8.3 rupture, and we propose that the Loa segment (from 22.5°S to 20.8°S) may be the one that ruptured in 1877.
ISSN: 0956-540X

hal-00941279
https://hal.archives-ouvertes.fr/hal-00941279
DOI : 10.1093/gji/ggt183

Éditeur(s) : HAL CCSD PeerJ
Résumé : International audience
Background: Heterocyclic aromatic amines (HAA) are environmental and food contaminants that are potentially carcinogenic for humans. 2-Amino-3,8-dimethylimidazo[4,5-f]quinoxaline (MeIQx) is one of the most abundant HAA formed in cooked meat. MeIQx is metabolized by cytochrome P450 1A2 in the human liver into detoxificated and bioactivated products. Once bioactivated, MeIQx metabolites can lead to DNA adduct formation responsible for further genome instability.Methods: Using a computational approach, we developed a numerical model for MeIQx metabolism in the liver that predicts the MeIQx biotransformation into detoxification or bioactivation pathways according to the concentration of MeIQx.Results: Our results demonstrate that 1) the detoxification pathway predominates, 2) the ratio between detoxification and bioactivation pathways is not linear and shows a maximum at 10µM of MeIQx in hepatocyte cell models, 3) CYP1A2 is a key enzyme in the system that regulates the balance between bioactivation and detoxification. Our analysis suggests that such a ratio could be considered as an indicator of MeIQx genotoxicity at a low concentration of MeIQx.Conclusions: Our model permits the investigation of the balance between bioactivation (i.e. DNA adduct formation pathway through the prediction of potential genotoxic compounds) and detoxification of MeIQx in order to predict the behaviour of this environmental contaminant in the human liver. It highlights the importance of complex regulations of enzyme competitions that should be taken into account in any further multi-organ models.
ISSN: 2167-8359

hal-01575579
https://hal.inria.fr/hal-01575579
PUBMED : 28879062
DOI : 10.7717/peerj.3703

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
North Tanzanian Divergence is the first stage of continental break-up of East African Rift (<6 Ma) and is one of the most concentrated areas of carbonatite magmatism on Earth, with singular Oldoinyo Lengai and Kerimasi volcanoes. Hanang volcano is the southernmost volcano in the North Tanzanian Divergence and the earliest stage of rift initiation. Hanang volcano erupted silica-undersaturated alkaline lavas with zoned clinopyroxene, nepheline, andradite-schorlomite, titanite, apatite, and pyrrhotite. Lavas are low MgO-nephelinite with low Mg# and high silica content (Mg# = 22.4–35.2, SiO2 = 44.2–46.7 wt%, respectively), high incompatible element concentrations (e.g. REE, Ba, Sr) and display Nb–Ta fractionation (Nb/Ta = 36–61). Major elements of whole rock are consistent with magmatic differentiation by fractional crystallization from a parental melt with melilititic composition. Although fractional crystallization occurred at 9–12 km and can be considered as an important process leading to nephelinite magma, the complex zonation of cpx (e.g. abrupt change of Mg#, Nb/Ta, and H2O) and trace element patterns of nephelinites recorded magmatic differentiation involving open system with carbonate–silicate immiscibility and primary melilititic melt replenishment. The low water content of clinopyroxene (3–25 ppm wt. H2O) indicates that at least 0.3 wt% H2O was present at depth during carbonate-rich nephelinite crystallization at 340–640 MPa and 1050–1100 °C. Mg-poor nephelinites from Hanang represent an early stage of the evolution path towards carbonatitic magmatism as observed in Oldoinyo Lengai. Paragenesis and geochemistry of Hanang nephelinites require the presence of CO2-rich melilititic liquid in the southern part of North Tanzanian Divergence and carbonate-rich melt percolations after deep partial melting of CO2-rich oxidized mantle source.
ISSN: 0010-7999

hal-01467390
https://hal.archives-ouvertes.fr/hal-01467390
DOI : 10.1007/s00410-016-1273-5

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Although first-order rate constants are basic ingredients of physical chemistry, biochemistry and systems modeling, their innermost nature is derived from complex physical chemistry mechanisms. The present study suggests that equivalent conclusions can be more straightly obtained from simple statistics. The different facets of kinetic constants are first classified and clarified with respect to time and energy and the equivalences between traditional flux rate and modern probabilistic modeling are summarized. Then, a naive but rigorous approach is proposed to concretely perceive how the Arrhenius law naturally emerges from the geometric distribution. It appears that (1) the distribution in time of chemical events as well as (2) their mean frequency, are both dictated by randomness only and as such, are accurately described by time-based and spatial exponential processes respectively.
Physica A: Statistical Mechanics and its Applications

hal-00845518
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00845518
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00845518v2/document
ARXIV : 1307.4583
DOI : 10.1016/j.physa.2013.05.036

Éditeur(s) : HAL CCSD Society for the Study of Reproduction
Résumé : International audience
Mammalian spermatogenesis is a complex and highly orchestrated combination of processes in which male germline proliferation and differentiation result in the production of mature spermatozoa. If recent genome-wide studies have contributed to the in-depth analysis of the male germline protein-encoding transcriptome, little effort has yet been devoted to the systematic identification of novel unannotated transcribed regions expressed during mammalian spermatogenesis. We report high-resolution expression profiling of male germ cells in rat, using next-generation sequencing technology and highly enriched testicular cell populations. Among 20 424 high-confidence transcripts reconstructed, we defined a stringent set of 1419 long multi-exonic unannotated transcripts expressed in the testis (testis-expressed unannotated transcripts [TUTs]). TUTs were divided into 7 groups with different expression patterns. Most TUTs share many of the characteristics of vertebrate long noncoding RNAs (lncRNAs). We also markedly reinforced the finding that TUTs and known lncRNAs accumulate during the meiotic and postmeiotic stages of spermatogenesis in mammals and that X-linked meiotic TUTs do not escape the silencing effects of meiotic sex chromosome inactivation. Importantly, we discovered that TUTs and known lncRNAs with a peak expression during meiosis define a distinct class of noncoding transcripts that exhibit exons twice as long as those of other transcripts. Our study provides new insights in transcriptional profiling of the male germline and represents a high-quality resource for novel loci expressed during spermatogenesis that significantly contributes to rat genome annotation.
ISSN: 0006-3363

hal-01063924
https://hal.archives-ouvertes.fr/hal-01063924
DOI : 10.1095/biolreprod.114.118166
PUBMED : 24740603

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The paleostorm history of coastal lagoon environments (Pierre Blanche Lagoon, central part of the Gulf of Lions) has been established by integrating clay mineralogy and geochemical analysis. Clay mineralogy combined with bulk major and trace elements concentrations allow for the definition of four different end members: the Mosson drainage basin, the sandy barrier, the biogenic and the anthropic components. The two main sedimentary sources of the lagoonal system are the Mosson drainage basin which has a high concentration of smectite and Al2O3, and the sandy barrier characterized by high contents of illite, chlorite, SiO2 and Zr. Smectite/(illite + chlorite), SiO2/Al2O3 and Zr/Al2O3 ratios can be used to reconstruct the past storm history of the Pierre Blanche Lagoon. Our results indicate that the sensitivities of the clay mineralogy and geochemistry proxies are different. These sensitivities could be related: 1) first, to the comparison between different grain size for geochemistry and for clay mineralogy: 2) second, to the complexity of the mix (four end-members for the geochemistry and two end-members for the clay minerals): and 3) third, by the storm's ability to transport sediment of different sizes. (C) 2010 Elsevier B.V. All rights reserved.
ISSN: 0037-0738

hal-00512614
https://hal.archives-ouvertes.fr/hal-00512614
DOI : 10.1016/j.sedgeo.2010.04.012

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The present study is based on a set of lavas and crosscutting dikes collected by dives along detailed vertical transects on the northern flank of the western part of the Blanco Transform Fault, Northeast Pacific. The studied area consists of a small basin, the Western Blanco Depression (WBD), extending from the southern end of the Juan de Fuca ridge to a pseudofault trace 60 km eastward. The Northern Scarp of the WBD comprises a volcanic unit overlying a sheeted-dike complex. Major and trace element data, coupled with Sr–Nd isotope ratios, reveal a two-component mantle source, composed by an isotopically depleted matrix variably veined by more enriched material. One chemical group (NS2), indistinguishable from the other Northern Scarp samples on the basis of trace element data, has an unusually depleted isotopic composition typical of a nearly pure mantle end-member. Some cogenetic samples of the Northern Scarp have been used to constrain the differentiation modalities. Anorthite and MgO content profiles in plagioclase xenocrysts and phenocrysts reveal (i) the existence of H2O-bearing evolved melts in the mushy zones and (ii) the occurrence of mixing process between these melts and anhydrous mafic liquids. The hydration is supported by other petrographic features such as high magmatic fO2 values, calculated from Fe–Ti oxide pairs, and the presence of pyroxene inclusions in plagioclase phenocrysts. Mixing, consistent with the existence of Ni-rich ferrobasalts, is interpreted to be the consequence of the reservoir refilling by mafic liquids (Mg# = 70). These petrological and geochemical evidences are combined with the evolution of Mg# with depth to suggest a periodic open-system magma chamber evolution beneath the southern end of the Juan de Fuca ridge.
ISSN: 0024-4937

insu-00213426
https://hal-insu.archives-ouvertes.fr/insu-00213426
DOI : 10.1016/j.lithos.2007.06.009

Éditeur(s) : HAL CCSD Springer Verlag (Germany) Springer Verlag
Résumé : International audience
Peridotite xenoliths erupted by alkali basaltic volcanoes in the western Pannonian Basin can be divided into two fundamentally contrasting groups. Geochemical characteristics of the abundant protogranular, porphyroclastic and equigranular nodules suggest that these samples originate from an old consolidated and moderately depleted lithospheric mantle domain. In contrast, the geochemical features of the worldwide rare, but in the Pannonian Basin relatively abundant, poikilitic xenoliths attest to a more complex evolution. It has been argued that the origin of the peculiar texture and chemistry may be intimately linked to melt/rock reactions at successively decreasing liquid volumes in a porous melt flow system. The most likely site where such reactions can take place is the asthenosphere-lithosphere boundary. In this context, poikilitic xenoliths may provide petrological and geochemical evidence for reactions between magmatic liquids issued from the uprising asthenosphere and the solid mantle rocks of the lithosphere. These reactions are important agents of the thermal erosion of the lithosphere; thus, they could have considerably contributed to the thinning of the lithosphere in the Pannonian region. We suggest that in the Pannonian Basin, there could be a strong relation between the unusual abundance of poikilitic mantle xenoliths and the strongly eroded lithosphere.
ISSN: 0010-7999

hal-01107421
https://hal.archives-ouvertes.fr/hal-01107421
DOI : 10.1007/s00410-014-1054-y

Éditeur(s) : HAL CCSD Frontiers
Résumé : International audience
The generation of handwriting is a complex neuromotor skill requiring the interaction of many cognitive processes. It aims at producing a message to be imprinted as an ink trace left on a writing medium. The generated trajectory of the pen tip is made up of strokes superimposed over time. The Kinematic Theory of rapid human movements and its family of lognormal models provide analytical representations of these strokes, often considered as the basic unit of handwriting. This paradigm has not only been experimentally confirmed in numerous predictive and physiologically significant tests but it has also been shown to be the ideal mathematical description for the impulse response of a neuromuscular system. This latter demonstration suggests that the lognormality of the velocity patterns can be interpreted as reflecting the behavior of subjects who are in perfect control of their movements. To illustrate this interpretation, we present a short overview of the main concepts behind the Kinematic Theory and briefly describe how its models can be exploited, using various software tools, to investigate these ideal lognormal behaviors. We emphasize that the parameters extracted during various tasks can be used to analyze some underlying processes associated with their realization. To investigate the operational convergence hypothesis, we report on two original studies. First, we focus on the early steps of the motor learning process as seen as a converging behavior toward the production of more precise lognormal patterns as young children practicing handwriting start to become more fluent writers. Second, we illustrate how aging affects handwriting by pointing out the increasing departure from the ideal lognormal behavior as the control of the fine motricity begins to decline. Overall, the paper highlights this developmental process of merging toward a lognormal behavior with learning, mastering this behavior to succeed in performing a given task, and then gradually deviating from it with aging.
ISSN: 1664-1078

hal-01098124
https://hal.archives-ouvertes.fr/hal-01098124
DOI : 10.3389/fpsyg.2013.0094

Éditeur(s) : HAL CCSD
Résumé : International audience
Spermatogenesis is a highly sophisticated process involved in the transmission of genetic heritage. It includes halving ploidy, repackaging of the chromatin for transport, and the equipment of developing spermatids and eventually spermatozoa with the advanced apparatus (e.g., tightly packed mitochondrial sheat in the mid piece, elongating of the tail, reduction of cytoplasmic volume) to elicit motility once they reach the epididymis. Mammalian spermatogenesis is divided into three phases. In the first the primitive germ cells or spermatogonia undergo a series of mitotic divisions. In the second the spermatocytes undergo two consecutive divisions in meiosis to produce haploid spermatids. In the third the spermatids differentiate into spermatozoa in a process called spermiogenesis. Paracrine, autocrine, juxtacrine, and endocrine pathways all contribute to the regulation of the process. The array of structural elements and chemical factors modulating somatic and germ cell activity is such that the network linking the various cellular activities during spermatogenesis is unimaginably complex. Over the past two decades, advances in genomics have greatly improved our knowledge of spermatogenesis, by identifying numerous genes essential for the development of functional male gametes. Large-scale analyses of testicular function have deepened our insight into normal and pathological spermatogenesis. Progress in genome sequencing and microarray technology have been exploited for genome-wide expression studies, leading to the identification of hundreds of genes differentially expressed within the testis. However, although proteomics has now come of age, the proteomics-based investigation of spermatogenesis remains in its infancy. Here, we review the state-of-the-art of large-scale proteomic analyses of spermatogenesis, from germ cell development during sex determination to spermatogenesis in the adult. Indeed, a few laboratories have undertaken differential protein profiling expression studies and/or systematic analyses of testicular proteomes in entire organs or isolated cells from various species. We consider the pros and cons of proteomics for studying the testicular germ cell gene expression program. Finally, we address the use of protein datasets, through integrative genomics (i.e., combining genomics, transcriptomics, and proteomics), bioinformatics, and modelling.
Systems Biology in Reproductive Medicine

hal-00877749
https://hal.archives-ouvertes.fr/hal-00877749
DOI : 10.3109/19396368.2012.691943
PUBMED : 22788530

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We present GravProcess, a set of MATLAB routines to process gravity data from complex campaign surveys and calculate the associated gravity field. Data reduction, analysis, and representation are done using the MATLAB Graphical User Interface Tool, which can be installed on most systems and platforms. Data processing is divided into several steps: (1) Integration of gravity data, station location, and gravity line connection input files; (2) Gravity data reduction applying solid-Earth tide and instrumental drift corrections and, depending on the required processing level, air pressure and oceanic tidal corrections; (3) Automatic network adjustment and alignment to absolute base stations; (4) Free air and terrain corrections to calculate gravity values and anomalies, and to estimate the associated errors. The final step is dedicated to post-processing and includes graphical representations of data and an output text file, which can be used by Geographic Information System software. An example of this processing chain applied to a recent survey in northern Morocco is given and compared with previous available results.
ISSN: 0098-3004

hal-01217120
https://hal.archives-ouvertes.fr/hal-01217120
DOI : 10.1016/j.cageo.2015.04.005

Éditeur(s) : HAL CCSD Wiley
Résumé :  
Animals, especially insects, are principal pollen vectors of tropical trees and have behavior patterns that affect gene dispersal. Here, we explore complex pollination systems using a new simulation model Eco-Gene and considering, among other factors, flowering synchrony, spatial distribution of trees, degree of selfing, population densities, pollinator flight distances, pollen deposition, and pollinator response to floral display size. Sensitivity analyses using two contrasting tree data sets (Jacaranda copaia and Dipteryx odorata) determined the importance of each parameter on three response variables: the proportion of seeds from self-pollination, effective population size, and pollen dispersal. Spatial considerations and attractiveness of floral displays were prominent features determining the population genetic result of pollinators, and some biological implications of the results are discussed.
ISSN: 0006-3606

hal-01032091
https://hal.archives-ouvertes.fr/hal-01032091
DOI : 10.1111/j.1744-7429.2004.tb00309.x

Éditeur(s) : HAL CCSD Springer Verlag (Germany) Springer Verlag
Résumé : Dehydration reactions result in minerals’ replacement and a transient fluid-filled porosity. These reactions involve interface-coupled dissolution–precipitation and might therefore lead to fixed crystallographic orientation relations between reactant (protolith) and product phases (i.e. topotaxy). We investigate these two phenomena in the dehydration of a foliated antigorite (atg) serpentinite by comparing the crystallographic preferred orientation (CPO) developed by olivine (ol), orthopyroxene (opx) and chlorite (chl) during high-pressure antigorite and chlorite dehydration in piston-cylinder experiments and in natural samples recording the dehydration of antigorite (Cerro del Almirez, Betic Cordillera, Spain). Experiments were performed under undrained conditions resulting in fluid-filled porosity and in strong CPO of the prograde minerals, controlled by the pre-existing antigorite CPO in the reactant foliated serpentinite. The orientation of a ol,opx and c∗chl is parallel to c∗atg from the protolith. The Cerro del Almirez samples show similar, locally well-developed topotactic relations between orthopyroxene, chlorite and antigorite, but the product CPOs are weaker and more complex at the thin section scale. In contrast to the experiments, olivine from natural samples shows a weak correlation between b ol and the former c∗atg. We relate the strengthening of local topotactic relations and the weakening of the inherited CPO at a larger scale in natural samples to compaction and associated fluid migration. Microstructural features that might be related to compaction in the natural samples include: (1) smooth bending of the former foliation, (2) gradual crystallographic misorientation (up to 16°) of prismatic orthopyroxene due to buckling by dislocation creep, (3) inversion of enstatite to low clinoenstatite (P21/c) along lamellae and (4) brittle fracturing of prismatic orthopyroxene enclosed by plastically deformed chlorite. The coexistence of orthopyroxene buckling and clinoenstatite lamellae enables estimating the local strain rates and shear stresses generated during compaction. An lower bound for the strain rates in the order of 10−12 to 10−13 s−1 and shear stresses of 60–70 MPa are estimated based on creep data. Lower shear stresses (20–40 MPa) are retrieved using a theoretical approach. These data point to slow compaction (and fluid extraction) in nature if the system is not perturbed by external forces, with rates only marginally higher than the viscoplastic deformation of the solid matrix.
ISSN: 0010-7999

hal-01174158
https://hal.archives-ouvertes.fr/hal-01174158
DOI : 10.1007/s00410-015-1129-4

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Our understanding of the contribution of interspecific interactions to functional diversity in nature lags behind our knowledge of spatial and temporal patterns. Although two-species mutualisms are found in all types of ecosystems, the study of their ecological influences on other community members has mostly been limited to third species, while their influence on entire communities remains largely unexplored. 2. We hypothesized that mutualistic interactions between two respective ant species and an epiphyte mediate the biological traits composition of entire invertebrate communities that use the same host plant, thereby affecting food webs and functional diversity at the community level. 3. Aechmea mertensii (Bromeliaceae) is both a phytotelm ('plant-held water') and an ant-garden epiphyte. We sampled 111 bromeliads (111 aquatic invertebrate communities) associated with either the ant Pachycondyla goeldii or Camponotus femoratus. The relationships between ants, bromeliads and invertebrate abundance data were examined using a redundancy analysis. Biological traits information for invertebrates was structured using a fuzzy-coding technique, and a co-inertia analysis between traits and abundance data was used to interpret functional differences in bromeliad ecosystems. 4. The vegetative traits of A. mertensii depended on seed dispersion by C. femoratus and P. goeldii along a gradient of local conditions. The ant partner selected sets of invertebrates with traits that were best adapted to the bromeliads' morphology, and so the composition of the biological traits of invertebrate phytotelm communities depends on the identity of the ant partner. Biological traits suggest a bottom-up control of community structure in C. femoratus-associated phytotelmata and a greater structuring role for predatory invertebrates in P. goeldii-associated plants. 5. This study presents new information showing that two-species mutualisms affect the functional diversity of a much wider range of organisms. Most biological systems form complex networks where nodes (e. g. species) are more or less closely linked to each other, either directly or indirectly, through intermediate nodes. Our observations provide community-level information about biological interactions and functional diversity, and perspectives for further observations intended to examine whether large-scale changes in interacting species/community structure over broad geographical and anthropogenic gradients affect ecosystem functions.
ISSN: 0269-8463

hal-00817509
https://hal.archives-ouvertes.fr/hal-00817509