Éditeur(s) : Elsevier
Résumé : The multi-component aspect of species diversity of groundfish assemblages was examined on the basis of a set of experimental trawl surveys conducted on the east coast of Corsica. We analysed and compared the structuration of diversity within three different bathymetric strata: the continental shelf (60-120 m depth), the upper slope (250-400 m) and the lower slope (450-570 m). For each of these three bathymetric strata, we simultaneously analysed 12 indices that are theoretically complementary and relate to 4 diversity components: (1) the number of species, (2) rarity, (3) evenness and (4) taxonomic diversity. Principal component analysis based on Spearman's correlation coefficients was carried out to investigate empirical relationships between the selected indices. Our results showed not only that a single diversity index cannot provide a complete view of the groundfish diversity along the east coast of Corsica, but also that-in some cases-one index cannot even encapsulate a complete description of a specific diversity component. We also found that the nature and the number of independent diversity components slightly varied from one bathymetric stratum to another. The main differences-which mainly occurred in the deepest bathymetric stratum-might be associated with lower density of individuals and lower dominance of some species at deeper depths. Finally, this study is the first dealing with groundfish diversity in this area, which is currently characterized by one of the lowest fishing intensity rates in the northern Mediterranean Sea. It might be considered as a first '' reference state '' with a view to monitoring the spatio-temporal changes in species diversity patterns along the east coast of Corsica in the future. (C) 2007 Elsevier B.V. All rights reserved.
Fisheries Research (0165-7836) (Elsevier), 2007-12 , Vol. 88 , N. 1-3 , P. 120-132

Droits : 2007 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2007/publication-3512.pdf
DOI:10.1016/j.fishres.2007.08.003
http://archimer.ifremer.fr/doc/00000/3512/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Questions: Several studies have described aggregated spatial patterns in tropical tree species. This study investigates aggregate dynamics of Vouacapoua americana (Aublet), a climax species whose spatial pattern is not simply related to light and soil conditions or to its short seed dispersal range. Location: Two rain forest sites: Nouragues and Paracou, in the Guiana Shield. Methods: We described the spatial pattern of tree locations and spatial autocorrelation of tree diameters, using statistics derived from Ripley's K. We particularly used methods to define analysis subplots according to local density or local mean diameter. We investigated relationships between spatial distributions of adults and saplings. Results: At both sites, populations of Vouacapoua demonstrated several nested levels of aggregation. Tree diameters were spatially autocorrelated, revealing the existence of clusters with similar diameters. In the largest aggregates, tree diameters declined from the centre to the edge. Regeneration was aggregated and occurred mainly at cluster edges and around rare isolated trees, and sapling densities and basal area of adults were negatively correlated. We show that long-distance dispersal events are rare. Conclusions: Environmental factors and seed dispersal only explain part of the observed spatial patterns. We provide two main hypotheses about Vouacapoua population dynamics. First, the lack of regeneration in aggregate centres results in the ageing of existing aggregates. We suggest that this lack of recruitment close to mature trees is due to a Janzen-Connell effect. However, aggregates can continue to grow along colonization fronts. Second, long-distance dispersal events allow the formation of new clusters and play a crucial role in the colonization process. We investigate aggregate dynamics of Vouacapoua americana (Aublet) whose spatial pattern is not simply related to environmental conditions or to its seed dispersal. Regeneration does not occur in centers of aggregate of adults. We suggest that rare long-distance dispersal events and density-dependence predation of seeds and seedlings play a crucial role in formation of new clusters and structuration of larger aggregates.
ISSN: 1100-9233

hal-01502642
https://hal-agroparistech.archives-ouvertes.fr/hal-01502642
DOI : 10.1111/jvs.12080

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
The Mediterranean hydrometeorological observatory Cévennes-Vivarais (OHM-CV) coordinates hydrometeorological observations (radars, rain gauges, water level stations) on a regional scale in southeastern France. In the framework of OHM-CV, temporary GPS measurements have been carried out for 2 months in autumn 2002, when the heaviest rainfall are expected. These measurements increase the spatial density of the existing permanent GPS network, by adding three more receivers between the Mediterranean coast and the Cévennes-Vivarais range to monitor maritime source of water vapour flow feeding the precipitating systems over the Cévennes-Vivarais region. In addition, a local network of 18 receivers covered an area of 30 by 30 km within the field of view of the meteorological radar. These regional and local networks of permanent and temporary stations are used to monitor the precipitable water vapour (PWV) with high temporal resolution (15 min). Also, the dense local network provided data which have been inverted using tomographic techniques to obtain the 3-D field of tropospheric water vapour content. This study presents methodological tests for retrieving GPS tropospheric observations from dense networks, with the aim of assessing the uncertainties of GPS retrievals. Using optimal tropospheric GPS retrieval methods, high resolution measurements of PWV on a local scale (a few kilometres) are discussed for rain events. Finally, the results of 3-D fields of water vapour densities from GPS tomography are analysed with respect to precipitation fields derived from a meteorological radar, showing a good correlation between precipitation and water vapour depletion areas.
ISSN: 1867-1381

hal-01022833
https://hal.archives-ouvertes.fr/hal-01022833
https://hal.archives-ouvertes.fr/hal-01022833/document
https://hal.archives-ouvertes.fr/hal-01022833/file/amt-7-553-2014.pdf
DOI : 10.5194/amt-7-553-2014

Éditeur(s) : HAL CCSD
Résumé : International audience
The Black Curassow (Crax alector) is a large game bird with Vulnerable conservation status found in north-centralSouth America. We examined its distributional pattern across French Guiana using a large number of environmentaldescriptors at 3 scales of analysis: landscape, forest type, and microhabitat. We used a hierarchical model withtemporary emigration and imperfect detection for data collected by standard distance sampling methods at 35study sites. At the landscape scale, Black Curassow density decreased with hunting pressure and increased withsteeper slopes in both hunted and unhunted areas. Topography appeared to be a good proxy for Black Curassowecological requirements and probably reflected habitat quality. At the forest scale, population density wasnegatively correlated with the abundance of palms and Mimosoideae and positively correlated with the abundanceof Lauraceae. Botanical families did not directly influence Black Curassow distribution, but rather determined spatialpatterns by being markers of a particular forest type. At the microhabitat scale, Black Curassows used hilltops morefrequently than other parts of the local topographical gradient. Our multiscale analysis shows that this species’distribution can be explained by biotic or abiotic conditions, regardless of the scale. For conservation, werecommend maintaining connectivity between Black Curassow populations separated by hunted areas. Ourpredicted densities could be used to adapt hunting quotas across French Guiana’s forests. We show that combiningfield and remote sensing data helps to understand the ecological processes responsible for Black Curassow habitatrelationships.
The Condor Ornithological Applications

hal-01455653
https://hal.archives-ouvertes.fr/hal-01455653
https://hal.archives-ouvertes.fr/hal-01455653/document
https://hal.archives-ouvertes.fr/hal-01455653/file/condor-15-28.1.pdf
DOI : 10.1650/CONDOR-15-28.1

Éditeur(s) : HAL CCSD Wiley
Résumé : Negative density dependence (NDD) and environmental filtering (EF) shape community assembly, but their relative importance is poorly understood. Recent studies have shown that seedlings mortality risk is positively related to the phylogenetic relatedness of neighbours. However, natural enemies, whose depredations often cause NDD, respond to functional traits of hosts rather than phylogenetic relatedness per se. To understand the roles of NDD and EF in community assembly, we assessed the effects on seedling mortality of functional similarity, phylogenetic relatedness and stem density of neighbouring seedlings and adults in a species-rich tropical forest. Mortality risks increased for common species when their functional traits departed substantially from the neighbourhood mean, and for all species when surrounded by close relatives. This indicates that NDD affects community assembly more broadly than does EF, and leads to the tentative conclusion that natural enemies respond to phylogenetically correlated traits. Our results affirm the prominence of NDD in structuring species-rich communities.
ISSN: 1461-023X

hal-01032429
https://hal.archives-ouvertes.fr/hal-01032429
DOI : 10.1111/j.1461-0248.2011.01705.x

Éditeur(s) : Cushman Foundation for Foraminiferal Research
Résumé : The objectives of this study were to observe foraminiferal colonization patterns and behavior in shrimp ponds in New Caledonia during a shrimp-growing (farming) cycle. Weekly collecting at 10 stations in 8 shrimp ponds yielded a total of 170 samples accompanied by environmental data. Seawater pumped from the nearby ocean filled the ponds at the beginning of the growth cycle and its daily renewal maintained salinity at 32-39, and supplied the ponds with influxes of smaller, mostly juvenile, foraminifera. A few days after initial filling, the pioneering species Ammonia tepida and Quinqueloculina seminula appeared, with A. tepida dominant. Their high reproduction rates increased both living and dead assemblage densities during the first 10 weeks. Populations of these two species then stabilized with higher oxygen demand (drop of redox) and consumption of living foraminifera by shrimp. Only a few colonizers subsequently appeared, which was attributed to the isolation of the pond, despite the high rate of water renewal. Only one pond had notably higher species richness, but it could not be distinguished from the others by its physicochemical parameters. The species that appeared in ponds initially barren of foraminifera also survived where there was water seepage between growing cycles, suggesting that the assemblages had already reached equilibrium with the environment. Despite the number of environmental parameters measured, only oxygen and reactive organic matter correlated with the microfauna on a weekly timescale. We assume that other parameters do not significantly affect foraminifera until they reach critical threshold. Consistent with previous studies, A. tepida was the species most tolerant of organic influx, but its relative abundance dropped once the organic matter flocculated and settled, leading to disoxic conditions in the sediment. Conversely, Q. seminula was able to climb through the floc and reach the oxygenated layer, where its relative abundance increased.
Journal of Foraminiferal Research (0096-1191) (Cushman Foundation for Foraminiferal Research), 2009-10 , Vol. 39 , N. 4 , P. 249-266

Droits : 2009 Cushman Foundation for Foraminiferal Research
http://archimer.ifremer.fr/doc/2009/publication-6954.pdf
DOI:10.2113/gsjfr.39.4.249
http://archimer.ifremer.fr/doc/00000/6954/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Cross-species analyses of plant functional traits have shed light on factors contributing to differences in performance and distribution, but to date most studies have focused on either leaves or stems. We extend these tissue-specific analyses of functional strategy towards a whole-plant approach by integrating data on functional traits for 13 448 leaves and wood tissues from 4672 trees representing 668 species of Neotropical trees. Strong correlations amongst traits previously defined as the leaf economics spectrum reflect a tradeoff between investments in productive leaves with rapid turnover vs. costly physical leaf structure with a long revenue stream. A second axis of variation, the 'stem economics spectrum', defines a similar tradeoff at the stem level: dense wood vs. high wood water content and thick bark. Most importantly, these two axes are orthogonal, suggesting that tradeoffs operate independently at the leaf and at the stem levels. By simplifying the multivariate ecological strategies of tropical trees into positions along these two spectra, our results provide a basis to improve global vegetation models predicting responses of tropical forests to global change.
ISSN: 1461-023X

hal-00594040
https://hal.archives-ouvertes.fr/hal-00594040

Éditeur(s) : HAL CCSD Oxford University Press (OUP): Policy B - Oxford Open Option B
Résumé : Variability of leaf traits related to photosynthesis was assessed in seedlings from 14 tree species growing in the tropical rain forest of French Guiana. Leaf photosynthetic capacity (maximum rate of carboxylation and maximum rate of electron transport) was estimated by fitting a biochemical model of photosynthesis to response curves of net CO2 assimilation rate versus intercellular CO2 mole fraction. Leaf morphology described by leaf mass per unit leaf area (LMA), density and thickness, as well as area- and mass-based nitrogen (N) and carbon (C) concentrations, were recorded on the same leaves. Large interspecific variability was detected in photosynthetic capacity as well as in leaf structure and leaf N and C concentrations. No correlation was found between leaf thickness and density. The correlations between area- and massbased leaf N concentration and photosynthetic capacity were poor. Conversely, the species differed greatly in relativeNallocation to carboxylation and bioenergetics. Principal component analysis (PCA) revealed that, of the recorded traits, only the computed fraction of total leafNinvested in photosynthesis was tightly correlated to photosynthetic capacity.We also used PCAto test to what extent species with similar shade tolerances displayed converging leaf traits related to photosynthesis. No clear-cut ranking could be detected among the shade-tolerant groups, as confirmed by a one-way ANOVA.We conclude that the large interspecific diversity in photosynthetic capacity was mostly explained by differences in the relative allocation of N to photosynthesis and not by leafNconcentration, and that leaf traits related to photosynthetic capacity did not discriminate shade-tolerance ranking of these tropical tree species.
ISSN: 0829-318X

hal-01031522
https://hal.archives-ouvertes.fr/hal-01031522

Éditeur(s) : HAL CCSD
Résumé : Among erosion processes, river incision is classicaly described as a key process controlling erosion of landscapes. Incision efficiency is mainly influenced by climate and erodibility. This latter is not only dependent on the nature of the bedrock, but also on its past deformation, which affects its rheological effective properties, such as fracture density. The main objectives of this thesis are: (1) to better constrain the relationship between effective properties and erodibility, and (2) to quantify the influence of erodibility and erosion on both the temporal and spatial building or decay of the topography. Several numerical tools are developed. A 1D formalism of landscape evolution is introduced, including river incision with stochastic distribution of water discharge and hillslope landsliding. A new remeshing algorithm called Surface Lagrangian Remeshing (SLR) is developed as a complement to remeshing algorithms dealing with internal elements. It allows one to take into account long-term erosion into 2D Lagrangian numerical codes based on triangular finite elements. Then the potentiality of measuring erodibility in-situ using a Schmidt hammer (R) is assessed for the active orogen of Taiwan, the diagenetic Annot sandstones and St Clement fault zone. Results suggest a strong control of R by effective properties. A linear model based on effective medium theory is applied to a fault zone with an unmacthed resolution (750 measures, 25 measures per square meter). The model successfully correlates R to fracture density. These results demonstrate that effective elasticity as well as erodibility are sensitive to the density and type of fractures. Finally I focus on the erosional and rheological conditions that allows reproducing post-orogenic evolution of mountain belts. A model coupling surface erosion and regional isostatic uplift is consistent with observations. The topographic decay and decrease of the ratio of surface elevation over crustal root thickness is at first order controlled by the initial geometry of the mountain belt and erosion efficiency. This new model highlights the control ofclimate and erodibility on the topographic decay and of lithospheric rheology on the perseverance of crustal roots.
Parmi les processus d'érosion, l'incision des rivières est classiquement décrit comme un processus clé contrôlant l'érosion des paysages. L'efficacité de l'incision est principalement influencée par le climat et par l'érodabilité. Ce dernier paramètre ne dépend pas seulement de la nature du substratum rocheux, mais aussi de sa déformation passée qui affecte ses propriétés rhéologiques équivalentes. Les principaux objectifs de cette thèse sont: (1) de mieux contraindre les relations entre propriétés équivalentes et érodabilité, et (2) de quantifier l'influence de l'érosion et de l'érodabilité sur la formation ou la décadence, spatiale et temporelle, de la topographie. Plusieurs outils numériques sont développés. Un formalisme 1D d'évolution des paysages est proposé, prenant en compte simultanément l'incision des rivières avec une distribution stochastique des débits en eau et l'érosion des versants par glissements de terrain. Un nouvel algorithme de remaillage appelé Surface Lagrangian Remeshing (SLR) est développé. Il permet de prendre en compte l'érosion à long terme dans les codes numériques 2D Lagrangiens basés sur des éléments finis triangulaires. Ensuite, la possibilité de mesurer in-situ l'érodabilité avec un marteau de Schmidt (R) est évaluée pour: l'orogène actif de Taiwan, les grès diagénétiques d'Annot et la zone de faille de St Clément. Les résultats suggèrent un fort contrôle de R par les propriétés équivalentes des roches testées. Un modèle linéaire, basé sur la théorie des milieux équivalents, est appliqué à une zone de faille avec une résolution inégalée (750 mesures, 25 mesures par mètre carré). Le modèle permet de corréler avec succès la densité de fracture et R. Ces résultats démontrent empiriquement que l'élasticité équivalente ainsi que l'érodabilité sont sensibles à la densité et à la nature des fractures. Enfin j'étudie les conditions d'érosion et de rhéologie qui permettent de reproduire l'évolution des chaînes de montagnes post-orogéniques. Un modèle couplant érosion en surface et soulèvement isostatique régional est compatible avec les observations. Les taux de décroissance topographique et de diminution du rapport de l'élévation de surface sur l'épaisseur de racine crustale sont contrôlés au premier ordre par la géométrie initiale de la chaîne de montagne et par l'efficacité de l'érosion. Ce nouveau modèle met en évidence le contrôle du climat et de l'érodabilité sur la décroissance topographique et de la rhéologie lithosphérique sur la persévérance des racines crustales.
https://tel.archives-ouvertes.fr/tel-00602341

tel-00602341
https://tel.archives-ouvertes.fr/tel-00602341
https://tel.archives-ouvertes.fr/tel-00602341/document
https://tel.archives-ouvertes.fr/tel-00602341/file/thesephilippesteer.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
This study assessed the usefulness of UV spectrophotometry for the monitoring of a yeast-based deoxygenation process proposed for ships' ballast water treatment to prevent the transfer of aquatic invasive species. Ten-day laboratory experiments using three treatment concentrations and different water types were conducted and resulted in complete oxygen depletion of treated waters. The treatment performance and quality of treated waters were determined by measuring the UV-visible absorbance spectra of water samples taken over time. Samples were also used for laboratory analysis of water quality properties. The UV absorbance spectra values were strongly correlated (r = 0.96) to yeast cell density in treated waters. The second-order derivative (D (2)) of the spectra varied greatly over time, and the spectrum profiles could be divided into two groups corresponding to the oxygenated and anoxic phases of the treatment. The D (2) value at 215 nm was strongly correlated (r = 0.94) to ammonia levels, which increased over time. The D (2) value at 225 nm was strongly correlated (r  extgreater 0.97) to DO concentration. Our results showed that UV spectrophotometry may provide a rapid assessment of the behavior and performance of the yeast bioreactor over time by quantifying (1) the density of yeast cells, (2) the time at which anoxic conditions were reached, and (3) a water quality index of the treated water related to the production of ammonia. We conclude that the rapidity of the technique confers a solid advantage over standard methods used for water quality analysis in laboratory and would permit the direct monitoring of the treatment performance on-board ships
Environmental Monitoring and Assessment

hal-01286253
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01286253
DOI : 10.1007/s10661-016-5209-3
PUBMED : 26944435

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Several studies, both theoretical and experimental, show that sedimentary rocks have fractal pore-grain interface. The real rocks are 3-d structures with highly tortuous and often fractal pore spaces. Before attempting simulation of this daunting geometry, we present here, as a preliminary study, a simpler 2-d version. In this paper, a computer simulated 2-d sedimentary rock structure is generated by the relaxed bidisperse ballistic deposition model. Grains of two different sizes are dropped ballistically on a linear substrate. By changing the fraction of the two types of particles, the porosity of the rock structure can be tuned. The structure undergoes compaction through the relaxation of possible unstable overhangs. The micro structure of the pore space is investigated. The pore mass and the rock-pore interface show a fractal behaviour with the same fractal dimension indicating that the pore volume is a fractal. Our simulation results indicate that the process of compaction of grains during the deposition process seems to erase the dependency of the fractal dimension on the grain size distribution. The two point density correlation is measured for the pore space. It shows anisotropy which is an outcome of the growth rule. X-ray tomography of two-dimensional sections of real sedimentary rocks obtained from Mallorca Island is subjected to the same study and the results compared with those obtained from simulation. The simulation results agree qualitatively with the real rock sample. We also study diffusion on the pore space. Diffusion is found to be anomalous as is expected in fractal spaces. It also bears the signature of anisotropy of the structure. Diffusion studies on the real rock sample could not yield conclusive results as the system size is not large enough.
ISSN: 0926-9851

hal-00761818
https://hal.archives-ouvertes.fr/hal-00761818
DOI : 10.1016/j.jappgeo.2012.09.002

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Betic-Rif orocline surrounding the Alboran Sea, the westernmost tip of the Mediterranean Sea, accommodates the NW–SE convergence between the Nubia and Eurasia plates. Recent GPS observations indicate a ∼4 mm/yr SW motion of the Rif Mountains, relative to stable Nubia, incompatible with a simple two-plate model. New gravity data acquired in this study define a pronounced negative Bouguer anomaly south of the Rif, interpreted as a ∼40 km-thick crust in a state of non-isostatic equilibrium. We study the correlation between these present-day kinematic and geodynamic processes using a finite-element code to model in 2-D the first-order behavior of a lithosphere affected by a downward normal traction (representing the pull of a high-density body in the upper mantle). We show that intermediate viscosities for the lower crust and uppermost mantle (View the MathML source1021–1022Pas) allow an efficient coupling between the mantle and the base of the brittle crust, thus enabling (1) the conversion of vertical movement, resulting from the downward traction, to horizontal movement and (2) shortening in the brittle upper crust. Our results show that incipient delamination of the Nubian continental lithosphere, linked to slab pull, can explain the present-day abnormal tectonics, contribute to the gravity anomaly observed in northern Morocco, and give insight into recent tectonics in the Western Mediterranean region.
ISSN: 0012-821X

hal-01467130
https://hal.archives-ouvertes.fr/hal-01467130
DOI : 10.1016/j.epsl.2016.08.041

Éditeur(s) : Ecole Nationale Supérieure Agronomique de Rennes (ENSAR)
Résumé : Artificial Fish Aggregating Devices (FADs) are known to concentrate tropical tunas. This aggregative behaviour drastically increases the vulnerability of these species to fishing. Alternatively, FADs can be used as oceanic observatories to study the aggregative behaviour of large pelagic fish. We conducted sea surveys in Martinique (Lesser Antilles) to i) establish a typology of the pelagic fish aggregations found around moored FADs ii) study their relations with their biotic and abiotic environment and the local fishery. The mean biomass of large pelagic fish aggregations was also estimated to provide scientific inputs to achieve a sustainable management of the moored FAD fishery. The first part presents the background of the study. We introduce the regional pelagic ecosystem, the aggregative behaviour of pelagic fish around FADs and the Martinican moored FAD fishery. The second part begins with a presentation of the conceptual framework of the study: the hierarchy theory. Observation scales and survey methodology are therefore described. Repeated echosounder surveys run in a star pattern were conducted around 2 moored FADs, in combination with underwater video observations, classical fishing experiments and CTD profiles. In the third part, the elements of the [moored FAD ¿ pelagic fish - environment - fishing] system and their interactions are numerically characterised in the vertical plane. The main type of pelagic fish aggregation was a large aggregation distributed in sub-surface (40-100 m) within a radius of 400 m of the FAD. This aggregation was mostly made of 60 cm FL blackfin tunas (Thunnus atlanticus). It appeared at sunrise and mostly spread away in the late afternoon. It was observed during all daytime surveys. The average density and the vertical structure of the micronektonic sound scattering layers (SSLs) were assessed locally around a FAD for 48h cycles. These SSLs descriptors showed positive correlation with the size and the abundance of the sub-surface tuna aggregation. Whereas this aggregation accounted for about 95% of the total biomass aggregated around a moored FAD, it was nearly unexploited by the local commercial fishermen. The fourth part focuses on the sub-surface tuna aggregation. A high variability of the spatial distribution of the aggregation was evidenced in the horizontal plane at daily, day to day and monthly temporal scales. These variations were related to fluctuations of the global abundance of the aggregation. The daytime average density of sub-surface tuna was modelled as a function of the distance to FAD, within an advection-diffusion framework. Based on these results, a universal kriging model was designed to assess the mean maximum daily biomass of the sub-surface tuna aggregation. This mean biomass estimate yielded 11 tons with an estimation error of 26%. To conclude, we present a hierarchical organization in space and time of a sub-surface tuna population distributed within a network of moored FADs, from micro to meso-scale. We suggest that the spatial distribution of tunas can be explained from fine to coarse-scales by behavioural processes (self-organization, feeding, aggregative behaviour) whereas their spatial distribution is mainly forced by environmental processes at broader scales.
L'utilisation de Dispositifs de Concentration de Poissons permet de provoquer la formation de larges agrégations de thonidés autour de dispositifs artificiels, ce qui augmente considérablement la vulnérabilité de ces ressources vis-à-vis de l'exploitation halieutique. Les DCP peuvent également être utilisés en tant qu'observatoires océaniques, afin d'étudier le comportement agrégatif du macronecton pélagique. Nous avons ainsi réalisé des observations autour de DCP ancrés en Martinique, afin de définir une typologie des agrégations de macronecton et de étudier leurs relations avec leur environnement biotique, abiotique et l'exploitation halieutique locale. Nous avons ensuite estimé la biomasse moyenne de macronecton agrégé autour d'un DCP ancré, afin de fournir des éléments scientifiques nécessaires à une gestion durable de ces ressources. La première partie présente le contexte de l'étude i.e. l'écosystème pélagique régional, le phénomène d'agrégation du macronecton autour des DCP et la pêche associée aux DCP ancrés en Martinique. La deuxième partie introduit la théorie de la hiérarchie qui a fourni le cadre conceptuel de l'étude et présente les échelles et méthodes d'observation. Le principal outil d'observation est un échosondeur scientifique, mis en oeuvre le long de parcours en étoile autour du DCP. Les prospections acoustiques ont été combinées à des observations vidéo sous marines, des pêches expérimentales et un suivi in-situ de l'environnement abiotique. La troisième partie présente une typologie des éléments constituant le système [DCP ancré - macronecton - environnement - pêche] dans le plan vertical et précise leurs interactions. Le type d'agrégation de macronecton dominant est une grande agrégation composée d'une majorité de thons noirs (Thunnus atlanticus) de taille moyenne (60 cm) distribuée en sub-surface (40-100 m), dans un rayon de 300 m autour de la tête des DCP. Cette agrégation se forme au lever du soleil et se disperse presque totalement dans l'après midi. Elle a été observée de jour lors de toutes les campagnes. Une corrélation positive entre la densité et la structure moyenne des couches micronectoniques diurnes évaluée localement autour du DCP au cours de 48 h et les dimensions et l'énergie acoustique de l'agrégation de thons de subs-surface a été mise en évidence. Malgré le fait que cette agrégation représente en moyenne 95 % de l'énergie acoustique du macronecton autour des DCP, elle est presque inexploitée par les pêcheurs artisans locaux. La quatrième partie met en évidence les fortes variations conjointes de la distribution spatiale dans le plan horizontal de la densité de l'agrégation de thons de sub-surface et de son abondance globale. Ces variations ont été observées au cours du cycle nycthéméral et aux échelles inter-journalières et mensuelles. La distribution spatiale moyenne de la densité diurne de l'agrégation en fonction de la distance au centre de gravité de l'agrégation est cependant très stable et peut être modélisée au moyen d'une équation d'advection-diffusion. Un modèle de krigeage universel, utilisant les résultats du modèle d'advection-diffusion, a permis d'évaluer la biomasse maximale journalière moyenne de l'agrégation de thons de sub-surface à une dizaine de tonnes, avec un coefficient de variation d'estimation de 26%. Nous proposons une représentation hiérarchique synthétique de la distribution spatiale d'une sous-population de thons dans un réseau de DCP ancrés de la micro à la méso-échelle. Nous suggérons que la distribution spatiale des thons est déterminée principalement à l'échelle fine (100m-1km) et à l'échelle grossière (1-10 km) par des processus comportementaux (auto-organisation, agrégation, nutrition) et par des processus environnementaux à échelle plus large.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2006/these-1735.pdf
http://archimer.ifremer.fr/doc/2006/sup-1735.pdf
http://archimer.ifremer.fr/doc/00000/1735/

Éditeur(s) : HAL CCSD Frontiers Media
Résumé : International audience
We present high resolution observations of microstructure and texture evolution during dynamic recrystallization (DRX) of ice polycrystals deformed in the laboratory at high temperature (≈0.98Tm). Ice possesses a significant viscoplastic anisotropy that induces strong strain heterogeneities, which result in an early occurrence of DRX mechanisms. It is therefore a model material to explore these mechanisms. High resolution c-axis measurements at sample scale by optical techniques and full crystallographic orientation measurements by cryo-Electron Back Scattering Diffraction (EBSD) provide a solid database for analyzing the relative impact of the macroscopic imposed stress vs. the local and internal stress fields on DRX mechanisms. Analysis of misorientation gradients in the EBSD data highlights a heterogeneous dislocation distribution, which is quantified by the Nye tensor estimation. Joint analyses of the dislocation density maps and microstructural observations highlight spatial correlation between high dislocation density sites and the onset of nucleation taking place by grain-boundary bulging, subgrain rotation or by the formation of kink-bands.
ISSN: 2296-6463

hal-01515284
https://hal.univ-lorraine.fr/hal-01515284
DOI : 10.3389/feart.2015.00081

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This paper examines the thermal properties of cement composites reinforced with vegetable bagasse fibres (1.5% and 3% wrtc). Thermal properties have been correlated to macroscopic density and porosity in order to estimate thermal conductivity of fibres using a calculation inspired from the Maxwell-Eucken modelling. Experimental investigations reveal that adding retified bagasse fibres reduces composites thermal conductivity and yields a weaker specific heat in comparison with composites made with alkaline bagasse fibres. Moreover, the more the fibres, the lighter the specimen; lower its thermal conductivity and lower its specific heat. Thermal conductivity of alkaline fibres is lower than retified fibres one.
ISSN: 1359-835X

hal-00809831
https://hal.univ-antilles.fr/hal-00809831
DOI : 10.1016/j.compositesa.2010.01.002

Éditeur(s) : HAL CCSD Elsevier
Résumé : The Borborema Province, in the NE of Brazil, is a rather complex piece in the Brazil-Africa puzzle as it represents the junction of the Dahomeyide/Pharusian, Central African, Aracuai and Brasilia fold belts located between the West-African/Sao Luis, Congo/Sao Francisco and Amazonas craton. The correlation between the Dahomeyides from W-Africa (Ghana, Benin, Togo, and Mali) and the Borborema Province involves the Medio Coreau and Central Ceara domains. The inferred continuation of the main oceanic suture zone exposed in the Dahomeyides of W Africa is buried beneath the Phanerozoic Parnaiba Basin in Brazil (northwest of the Medio Coreau domain) where some high density gravity anomalies may represent hidden remnants of an oceanic suture. In addition to this major suture a narrow, nearly continuous strip composed of mainly mafic pods containing relics of eclogite-facies assemblages associated with partially migmatized granulite-facies metapelitic gneisses has been found further east in the NW Borborema Province. These high pressure mafic rocks, interpreted as retrograded eclogites, are located between the Transbrasiliano Lineament and the Santa Quiteria continental arc and comprise primitive to evolved arc-related rocks with either arc- or MORB-type imprints that can indicate either deep subduction of oceanic lithosphere or roots of continental and oceanic magmatic arcs. Average peak P-T conditions under eclogite-facies metamorphism (T=770 degrees C and P = 17.3 kbar) were estimated using garnet-clinopyroxene thermometry and Jd content in clinopyroxene. Transition to granulite-facies conditions, as well as later widespread re-equilibration under amphibolite facies, were registered both in the basic and the metapelitic rocks and suggest a clockwise P-T path characterized by an increase in temperature followed by strong decompression. A phenomenon possibly related to the exhumation of a highly thickened crust associated with the suturing of the Medio Coreau and Central Ceara domains, two distinct crustal blocks separated by the Transbrasiliano Lineament.
ISSN: 1342-937X

hal-00413584
https://hal.archives-ouvertes.fr/hal-00413584
DOI : 10.1016/j.gr.2009.01.003

Éditeur(s) : HAL CCSD
Résumé : International audience
Selective serotonin reuptake inhibitor medications (SSRIs) are the first lines of treatment for maternal affective disorders, and are prescribed to up to 10% of pregnant women. Concern has been raised about how perinatal exposure to these medications affect offspring neurobehavioral outcomes, particularly those related to social interactions, as recent research has reported conflicting results related to autism spectrum disorder (ASD) risk in children prenatally exposed to SSRIs. Therefore, the aim of this work was to investigate the effects of perinatal exposure to the SSRI fluoxetine on social play behaviors and the hypothalamic pituitary adrenal system, using a model of pre-gestational maternal stress. We also investigated synaptic proteins in the CA2, CA3, and dentate gyrus of the hippocampus, as well as number of immature neurons in the granule cell layer, as both measures of plasticity in the hippocampus have been linked to social behaviors. In pre-adolescent male and female Sprague-Dawley rat offspring, main findings show that perinatal fluoxetine prevents the negative effect of maternal stress on sibling play behavior. However, perinatal fluoxetine increased social aggressive play with a novel conspecific in both sexes and decreased time grooming a novel conspecific in males only. Perinatal fluoxetine also increased serum corticosteroid binding globulin levels, 5-HT levels in the hippocampus, and pre-synaptic density assessed via synaptophysin in the dentate gyrus. Social interaction was significantly correlated with changes in plasticity in the CA2 region of the hippocampus. Pre-gestational maternal stress exposure resulted in significantly decreased rates of hippocampal neurogenesis and synaptophysin density in the dentate gyrus of pre-adolescent males, but not females. Together, these results further characterize the role of perinatal SSRIs, maternal stress prior to conception, and sex/gender on developing social behaviors and related plasticity in the hippocampus of pre-adolescent offspring.
Psychoneuroendocrinology

hal-01579611
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01579611
DOI : 10.1016/j.psyneuen.2017.07.480
PUBMED : 28735226

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The interpretation of coseismic surface deformation measurements through inversion techniques is of major importance to understand the mechanical behaviour of a seismic fault. Dense geodetic data sets in the vicinity of the ruptured fault provide unique constraints on detailed fault geometry and slip distribution at depth, making them complementary to seismological data. Bam earthquake (Mw 6.6, 2003 December 26) induced surface deformation has been precisely mapped by Envisat ASAR interferometry and by subpixel correlation techniques applied to Spot-5 and ASAR amplitude images. These oblique and horizontal estimations of deformation have been completed with one levelling profile along the main road crossing the rupture from west to east. We process these data (separately and jointly) in a two-step inversion technique, within the elastic half-space theory framework. Our objective is to determine the dislocation model at depth that satisfies simultaneously all the geodetic constraints. Also, we estimate the relative contribution of each geodetic data set to this inversion process.We first use a stochastic direct approach called neighbourhood algorithm in order to estimate the average characteristics of the rupture, and their relative uncertainty. Constraining in this way the geometry of the ruptured fault, we then linearize the inverse problem and compute the slip distribution on the fault using a standard weighted least-square technique, assuming the solution is smooth to some degree. At each step, we discuss the optimal models, their stability as well as the relative influence of each data set on the derived models parameters. Our preferred model reveals a shallow dislocation on a quasi-vertical fault, slightly dipping towards east. The slip vector has a strike-slip component as high as 2 m, while the dip-slip component seems negligible.However, the estimation of the resolution matrices emphasizes the fact that the details of deep fault slip distribution remain out of the scope of this ill-conditioned inverse problem. Yet, our preferred model suggests a main dislocation limited at depth between 1 and 6 km. By contrast, the aftershocks observed in the months following the earthquake are located just beneath the estimated main shock.
ISSN: 0956-540X

hal-00314173
https://hal.archives-ouvertes.fr/hal-00314173
https://hal.archives-ouvertes.fr/hal-00314173/document
https://hal.archives-ouvertes.fr/hal-00314173/file/GJI-2007-169-849-briole.pdf
DOI : 10.1111/j.1365-246X.2007.03358.x

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Among persisting questions on bone calcification, a major one is the link between protein expression and mineral deposition. A cell culture system is here proposed opening new integrative studies on biomineralization, improving our knowledge on the role played by non-collagenous proteins in bone. This experimental in vitro model consisted in human primary osteoblasts cultured for 60 days at the surface of a 3D collagen scaffold mimicking an osteoid matrix. Various techniques were used to analyze the results at the cellular and molecular level (adhesion and viability tests, histology and electron microscopy, RT-and qPCR) and to characterize the mineral phase (histological staining, EDX, ATG, SAED and RMN). On long term cultures human bone cells seeded on the osteoid-like matrix displayed a clear osteoblast phenotype as revealed by the osteoblast-like morphology, expression of specific protein such as alkaline phosphatase and expression of eight genes classically considered as osteoblast markers, including BGLAP, COL1A1, and BMP2. Von Kossa and alizarine red allowed us to identify divalent calcium ions at the surface of the matrix, EDX revealed the correct Ca/P ratio, and SAED showed the apatite crystal diffraction pattern. In addition RMN led to the conclusion that contaminant phases were absent and that the hydration state of the mineral was similar to fresh bone. A temporal correlation was established between quantified gene expression of DMP1 and IBSP, and the presence of hydroxyapatite, confirming the contribution of these proteins to the mineralization process. In parallel a difference was observed in the expression pattern of SPP1 and BGLAP, which questioned their attributed role in the literature. The present model opens new experimental possibilities to study spatio-temporal relations between bone cells, dense collagen scaffolds, NCPs and hydroxyapatite mineral deposition. It also emphasizes the importance of high collagen density environment in bone cell physiology.
ISSN: 1932-6203

hal-01142641
http://hal.upmc.fr/hal-01142641
http://hal.upmc.fr/hal-01142641/document
http://hal.upmc.fr/hal-01142641/file/Silvent_2013_Collagen.pdf
DOI : 10.1371/journal.pone.0057344

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Genetic diversity is crucial for species' maintenance and persistence, yet is often overlooked in conservation studies. Species diversity is more often reported due to practical constraints, but it is unknown if these measures of diversity are correlated. In marine invertebrates, adults are often sessile or sedentary and populations exchange genes via dispersal of gametes and larvae. Species with a larval period are expected to have more connected populations than those without larval dispersal. We assessed the relationship between measures of species and genetic diversity, and between dispersal ability and connectivity. We compiled data on genetic patterns and life history traits in nine species across five phyla. Sampling sites spanned 600km in the northwest Mediterranean Sea and focused on a 50-km area near Marseilles, France. Comparative population genetic approaches yielded three main results. (i) Species without larvae showed higher levels of genetic structure than species with free-living larvae, but the role of larval type (lecithotrophic or planktotrophic) was negligible. (ii) A narrow area around Marseilles, subject to offshore advection, limited genetic connectivity in most species. (iii) We identified sites with significant positive contributions to overall genetic diversity across all species, corresponding with areas near low human population densities. In contrast, high levels of human activity corresponded with a negative contribution to overall genetic diversity. Genetic diversity within species was positively and significantly linearly related to local species diversity. Our study suggests that local contribution to overall genetic diversity should be taken into account for future conservation strategies.
ISSN: 0962-1083

hal-01681650
https://hal.archives-ouvertes.fr/hal-01681650
DOI : 10.1111/mec.14389