Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Mid-ocean ridge basalt (MORB) is the most abundant magma on Earth, and provides a geochemical window into the mantle. Deriving mantle composition and melting processes from the erupted lavas requires correction to be made for their evolution as they pass through and generate the oceanic crust. This is typically done by assuming that modification of melts in crustal magma chambers occurs exclusively by fractional crystallisation. However, extensive mineral major- and trace element data from a full section of fast-spread lower crustal rocks exposed in Hess Deep (equatorial Pacific Ocean) demonstrate that their evolution is instead controlled by reactive porous flow. These reactions lead to a strong enrichment in, and fractionation of, incompatible trace elements in the melt (as recorded by clinopyroxene compositions), leading to melt compositions far outside of the compositional realm of MORB both in terms of trace element abundances and ratios. The reactive signature increases in strength up section, peaking in varitextured gabbros interpreted to represent the fossilised axial melt lens, indicating that reactive porous flow occurred on the scale of the entire lower crust. The enrichment of the melt is coupled with a strong trace element depletion of plagioclase, olivine, and, to a lesser extent, clinopyroxene cores, suggesting that these phases represent the residues of the reactions from which trace elements have been removed. The dominant role of reactive porous flow, and the resulting deviations from fractional crystallisation predictions, suggest that the lower oceanic crust plays a much more complex and significant role in modifying the compositions of MORB than previously expected, with consequent implications for models of mantle processes.
ISSN: 0012-821X

hal-00814075
https://hal.archives-ouvertes.fr/hal-00814075
DOI : 10.1016/j.epsl.2012.11.012

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Retreatment with pegylated interferon (peg-IFN) and ribavirin (RBV) results in poor sustained virological response (SVR) rates in human immunodeficiency virus (HIV)/hepatitis C virus (HCV)-coinfected patients. There are limited data regarding the use of telaprevir plus peg-IFN/RBV in this population. HIV type 1-infected patients who previously failed ≥12 weeks of peg-IFN/RBV for HCV genotype 1 coinfection were enrolled in a single-arm, phase 2 trial. Patients with cirrhosis and previous null response were excluded. Authorized antiretrovirals were tenofovir, emtricitabine, efavirenz, atazanavir, and raltegravir. All patients received peg-IFN alfa-2a (180 µg/week) plus RBV (1000-1200 mg/day) for 4 weeks, followed by telaprevir (750 mg or 1125 mg every 8 hours with efavirenz) plus peg-IFN/RBV for 12 weeks and peg-IFN/RBV for 32-56 weeks according to virological response at week 8. The primary endpoint was the SVR rate at 24 weeks after the end of treatment (SVR24). Sixty-nine patients started treatment; SVR24 was achieved in 55 (80% [95% confidence interval, 68%-88%). SVR24 was not influenced by baseline fibrosis stage, IL28B genotype, antiretroviral regimen, HCV subtype, CD4 cell count, previous response to HCV treatment, HCV RNA level, or HCV RNA decline at week 4. HCV treatment was discontinued for adverse events (AEs) in 20% of patients, including cutaneous (4%), psychiatric (4%), hematological (6%), and other AEs (6%). Peg-IFN or RBV dose reduction was required in 23% and 43% of patients, respectively. Seventy percent of patients required erythropoietin, blood transfusions, or RBV dose reduction for anemia. Two patients died during the study. No HIV breakthrough was observed. Despite a high discontinuation rate related to toxicity, a substantial proportion of treatment-experienced HIV-coinfected patients achieved SVR24 with a telaprevir-based regimen. Clinical Trials Registration. NCT01332955.
ISSN: 1058-4838

hal-01118447
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01118447
PUBMED : 25139963
DOI : 10.1093/cid/ciu659

Éditeur(s) : Gauthier-Villars
Résumé : Coastal lagoons have formed where marine inlets or embayments have become partly or wholly enclosed by depositional spits and barriers, built up as a sequel to the world-wide Holocene marine transgression. Spits and barriers consist of sediment (sand, shingle) derived from the sea floor or carrier alongshore from river mouth or eroding cliff sources; they have been shaped primarily by wave action, some migrating landward while others have remained in position or prograded seaward. A modern prevalence of erosion on barrier coastlines, recession resulting from net losses of sediment offshore, alongshore, or landward has been deomonstrated. This is the outcome partly of rising sea level and partly of diminishing sediment supply. Often the consequence of man's impacts on coastal environments. Examples are given of changes that have resulted from the cutting of artificial entrances through barriers to the building of barriers across tidal inlets to exclude marine penetration.
Oceanologica Acta, Special issue (0399-1784) (Gauthier-Villars), 1982

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00246/35750/34258.pdf
http://archimer.ifremer.fr/doc/00246/35750/

Éditeur(s) : HAL CCSD
Résumé : The mosquito species Aedes (Stegomyia) aegypti (Linnaeus 1762) was introduced into the Americas some 400 years ago from the African continent. Currently, this species is the primary agent behind dengue and chikungunya outbreaks in the pan-tropical area and its widespread distribution has likely played an important role in the recent expansion of the Zika virus. The biology of Ae. (Stg.) aegypti is particularly well known, which is not the case for its ecology. By adopting a cross-disciplinary approach I attempted to understand the relative contribution of biotic and abiotic factors as well as some evolutionary processes in the distribution of this species at the local and regional scales in French Guiana.Initially, I was interested in revising the core knowledge concerning the diversity of mosquitoes in French Guiana. By combining traditional and molecular taxonomy, this step allowed my colleagues and I to discover several new species and to create the appropriate tools to manage this type of entomological data.Secondly, we studied the spatio-temporal structure of resident aquatic macroinvertebrate communities in urban areas. This highlighted the existence of antagonistic and mutualistic interactions. In particular, the native mosquito Limatus durhamii Theobald 1901 appears to prevent the sustainable establishment of Ae. (Stg.) aegypti in slightly urbanized environments via a mechanism of competitive exclusion.
Le moustique Aedes (Stegomyia) aegypti (Linnaeus 1762) a été introduit dans les Amériques depuis le continent africain il y a environ 400 ans. Actuellement, cette espèce est la principale responsable des épidémies de dengue et de chikungunya dans la zone pantropicale et sa large répartition a très probablement joué un rôle important dans l’expansion récente du virus Zika. La biologie d’Ae. (Stg.) aegypti est particulièrement bien connue, ce qui n’est pas le cas de son écologie, en particulier de ses interactions avec les communautés résidentes. En adoptant une démarche pluridisciplinaire je me suis intéressé à la contribution relative des facteurs biotiques et abiotiques ainsi que de certains processus évolutifs dans la distribution de cette espèce à différentes échelles en Guyane française.Dans un premier temps j’ai participé à la révision des connaissances fondamentales sur la diversité des moustiques de Guyane. En alliant la taxonomie classique et moléculaire, cette étape a permis de découvrir plusieurs nouvelles espèces et de mettre en place des outils adaptés à la gestion de ce type de données, notamment pour une utilisation future.Dans un second temps la structuration spatio-temporelle des communautés résidentes de macro-invertébrés aquatiques a été étudiée en milieu urbain. Cela a permis de mettre en évidence l’existence d’interactions antagonistes et mutualistes avec les taxons des communautés résidentes. En particulier, le moustique autochtone Limatus durhamii Theobald 1901 semble empêcher l’établissement durable d’Ae. (Stg.) aegypti dans les milieux faiblement urbanisés via un mécanisme d’exclusion compétitive.
https://tel.archives-ouvertes.fr/tel-01405425

NNT : 2016YANE0001
tel-01405425
https://tel.archives-ouvertes.fr/tel-01405425
https://tel.archives-ouvertes.fr/tel-01405425/document
https://tel.archives-ouvertes.fr/tel-01405425/file/These_Def_Talaga.pdf

Éditeur(s) : HAL CCSD American Chemical Society
Résumé : International audience
The 90-kDa heat shock protein (Hsp90) is a highly flexible dimer able to self-associate in the presence of divalent cations or under heat shock. This study investigated the relationship between Hsp90 oligomers and the Hsp90 cochaperone Aha1 (activator of Hsp90 ATPase). The interactions of Aha1 with Hsp90 dimers and oligomers were evaluated by ultracentrifugation, size-exclusion chromatography coupled to multiangle laser light scattering and high-mass matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Hsp90 dimer was able to bind up to four Aha1 molecules, and Hsp90 oligomers are also able to interact with Aha1. The binding of Aha1 did not interfere with the Hsp90 oligomerization process. Except for Hsp90 dimer, the stoichiometry of the interaction remained constant, at 2 Aha1 molecules per Hsp90 dimer, regardless of the degree of Hsp90 oligomerization. Moreover, Aha1 predominantly bound to Hsp90 oligomers. Thus, the ability of Hsp90 oligomers to bind the Aha1 ATPase activator reinforces their role within the Hsp90 chaperone machineries
ISSN: 0003-2700

hal-01175535
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01175535
DOI : 10.1021/acs.analchem.5b00051
PUBMED : 26076190

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Dietary exposure to pesticide residues may present a risk to public health, especially for sensitive populations such as pregnant women. To characterize this risk, this study assessed chronic dietary exposure to pesticide residues based on the French ELFE cohort. A self-administered food frequency questionnaire (FFQ) about the last three months of pregnancy filled in by pregnant women in 2011 was used in combination with occurrence data from French Total Diet Studies completed by the results of national monitoring programs on pesticide residues in food. The dietary intake of pesticides (μg/kg of body weight/day) was estimated for 14,099 pregnant women with a complete FFQ, for 317 substances under two occurrence scenarios to handle left-censored data: a lower-bound scenario (LB), where undetected results were set to zero, and an upper-bound scenario (UB), where undetected results were set to the detection limit if the substance was expected to be found in food and zero if it was not. The risk was assessed for 284 substances with a toxicological reference value (TRV) and a good coverage level of the diet potentially contributing to pesticide intake. The cumulative risk was also assessed for seven effects on nervous and thyroid systems using the hazard index and the Cumulative Assessment Groups defined by EFSA. Substances with the highest exposure levels under the LB scenario were, in decreasing order, imazalil, piperonyl butoxide, chlorpropham, thiabendazole, iprodione and propargite. Under the LB scenario, only for lindane did women have a statistically significant probability of exceeding the TRV (2.4%). Under the UB scenario, risk could not be excluded for nine other substances. A better management of left-censored data and more sensitive analyses of the main food contributors might help to refine the UB exposure and risk assessments. A statistically significant cumulative risk was found for neurochemical effects related to high intake levels of three organophosphate insecticides (chlorpyrifos, pirimiphos-methyl and dimethoate) mainly detected in fruits and cereals
ISSN: 0160-4120

hal-01319892
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01319892
DOI : 10.1016/j.envint.2016.04.007
PUBMED : 27187793

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Afin de mettre en perspective les différents articles du dossier, le texte souligne les différentes étapes qui définissent la situation de la façade caraïbe à la fois au sein des Etats-nations et de la région centraméricaine. Depuis une position de marge ou d’enclave liée à la fois à la géographie et aux logiques de l’empire espagnol, cet ensemble territorial s’est construit à partir de fragments plus ou moins connectés entre eux et aux espaces régionaux maritimes (caribéen ou atlantique). Au cours de leur construction, les différents Etats-nations n’envisagent d’abord la façade caraïbe que dans sa dimension de connexion transisthmique. Pourtant, on constate au vingtième siècle différents processus d’intégration territoriale qui visent à relier espace continental et façade caraïbe, processus qu’il faut associer à de nouvelles dynamiques démographiques. Les sociétés d’interface qui en résultent, voient leurs composantes « ladinas », indiennes, ou afro-descendantes se réorganiser. Enfin, ces fragments qui composent la façade prennent de nouvelles couleurs à la lumière des projections faites par d’autres acteurs (ONG) ou à d’autres échelles (région américaine).
In order to put into perspective the different papers of the issue, this text highlights the successive stages by which the Caribbean coastline of Central American has been constructed, under the several States-nations and as a part of the Central American region. As a margin or enclave due to geographical characters as to the logics of Spanish Empire, these territories have been made from fragments more or less connected between them or to other regional maritime spaces (Caribbean or Atlantic). When growing, the States-nations in the region first exclusively consider their Caribbean coastline as a transisthmic connection. Yet, during the twentieth century, various process of territorial integration aim to connect continental spaces and maritime coastline, associating demographical dynamics. Societies of interface result of these process, where their ladina, indian, afro components are reorganized. Finally, theses fragments as elements of the façade take a new color in the look of new actors (NGO) or from other scales and spaces (Atlantic region, Caribbean Sea).
Para poner en perspectiva los diferentes artículos del numero temático, este texto subraya las varias etapas en que definieron la situación de la costa caribeña, a la vez en cada Estado-Nacion y al nivel de la región. Con una posición de margen o enclave, que se explica tan por motivos geográficos que por las lógicas del imperio español, este conjunto territorial se ha construido a partir de fragmentos más o menos conectados entre sí e con los espacios regionales marítimos (caribeño o atlántico). Cuando se desarrollaron, los Estados-naciones consideraban las costas caribeñas solo por su potencial transístmico. Sin embargo, en el siglo veinte, llevaron a cabo varios procesos de integración territorial que les permiten vincular su espacio continental con la fachada atlántica, y eso asociándose a importantes dinámicas poblacionales. Resultan de estos procesos sociedades de interfaz, cuyos componentes ladinos, indígenas y afros se ven reorganizados. Por fin, los fragmentos que componen la costa caribeña toman otro color a la luz de proyectos llevados por actores ajenos (ONG) o desde espacios y escalas diferentes (Espacio atlántico, región americana).
Amérique centrale
Caraïbes
Livingston
Guatemala

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6032
http://journals.openedition.org/etudescaribeennes/6032

Éditeur(s) : HAL CCSD
Résumé : International audience
Some research on written production has focused on the role of the syllable as a processing unit. However, the precise nature of this syllable unit has yet to be elucidated. The present study examined whether the nature of this processing unit is orthographic (i.e., the ortho-syllable) or phonological. Thirty-two native French speakers were asked to copy adjectives on a digitizer, successively adding a plural and a feminine one-letter morpheme to the same adjective. The adjective agreement could modify the structure of both phonological and orthographic syllables, only ortho-syllabic structure, or leave both unchanged. When the change modified only the orthographic syllable structure, there was an increase in duration at the letter before the syllable boundary. By contrast, when adding a letter changed both orthographic and phonological structures, an increase in the duration of the inter-letter interval was observed. Importantly, the increase in duration cannot be explained exclusively by the addition of a letter because the addition of a plural inflection did not significantly influence the dynamics of handwritten production. These results are consistent with the idea that ortho-syllables serve as a processing unit during handwriting, and that this type of syllable is specific to the written code.
17th Biennial Conference of the International Graphonomics Society
Pointe-à-Pitre, Guadeloupe

hal-01165879
https://hal.univ-antilles.fr/hal-01165879
https://hal.univ-antilles.fr/hal-01165879/document
https://hal.univ-antilles.fr/hal-01165879/file/IGS_2015_submission_14.pdf

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : International audience
Background. Adverse psychosocial working environments characterized by job strain (the combination of high demands and low control at work) are associated with an increased risk of depressive symptoms among employees, but evidence on clinically diagnosed depression is scarce. We examined job strain as a risk factor for clinical depression. Method. We identified published cohort studies from a systematic literature search in PubMed and PsycNET and obtained 14 cohort studies with unpublished individual-level data from the Individual-Participant-Data Meta-analysis in Working Populations (IPD-Work) Consortium. Summary estimates of the association were obtained using random-effects models. Individual-level data analyses were based on a pre-published study protocol. Results. We included six published studies with a total of 27 461 individuals and 914 incident cases of clinical depression. From unpublished datasets we included 120 221 individuals and 982 first episodes of hospital-treated clinical depression. Job strain was associated with an increased risk of clinical depression in both published [relative risk (RR) = 1.77, 95% confidence interval (CI) 1.47-2.13] and unpublished datasets (RR = 1.27, 95% CI 1.04-1.55). Further individual participant analyses showed a similar association across sociodemographic subgroups and after excluding individuals with baseline somatic disease. The association was unchanged when excluding individuals with baseline depressive symptoms (RR = 1.25, 95% CI 0.94-1.65), but attenuated on adjustment for a continuous depressive symptoms score (RR = 1.03, 95% CI 0.81-1.32). Conclusions. Job strain may precipitate clinical depression among employees. Future intervention studies should test whether job strain is a modifiable risk factor for depression.
ISSN: 0033-2917

hal-01560152
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01560152
DOI : 10.1017/S003329171600355X
PUBMED : 28122650

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Myosin II (or Myosin Heavy Chain II, MHCII) is a family of molecular motors involved in the contractile activity of animal muscle cells but also in various other cellular processes in non-muscle cells. Previous phylogenetic analyses of bilaterian MHCII genes identified two main clades associated respectively with smooth/non-muscle cells (MHCIIa) and striated muscle cells (MHCIIb). Muscle cells are generally thought to have originated only once in ancient animal history, and decisive insights about their early evolution are expected to come from expression studies of Myosin II genes in the two non-bilaterian phyla that possess muscles, the Cnidaria and Ctenophora. Results: We have uncovered three MHCII paralogues in the ctenophore species Pleurobrachia pileus. Phylogenetic analyses indicate that the MHCIIa /MHCIIb duplication is more ancient than the divergence between extant metazoan lineages. The ctenophore MHCIIa gene (PpiMHCIIa) has an expression pattern akin to that of ``stem cell markers'' (Piwi, Vasa...) and is expressed in proliferating cells. We identified two MHCIIb genes that originated from a ctenophore-specific duplication. PpiMHCIIb1 represents the exclusively muscular form of myosin II in ctenophore, while PpiMHCIIb2 is expressed in non-muscle cells of various types. In parallel, our phalloidin staining and TEM observations highlight the structural complexity of ctenophore musculature and emphasize the experimental interest of the ctenophore tentacle root, in which myogenesis is spatially ordered and strikingly similar to striated muscle formation in vertebrates. Conclusion: MHCIIa expression in putative stem cells/proliferating cells probably represents an ancestral trait, while specific involvement of some MHCIIa genes in smooth muscle fibres is a uniquely derived feature of the vertebrates. That one ctenophore MHCIIb paralogue (PpiMHCIIb2) has retained MHCIIa-like expression features furthermore suggests that muscular expression of the other paralogue, PpiMHCIIb1, was the result of neofunctionalisation within the ctenophore lineage, making independent origin of ctenophore muscle cells a likely option.
ISSN: 1471-2148

hal-01544486
https://hal.archives-ouvertes.fr/hal-01544486
DOI : 10.1186/1471-2148-12-107

Éditeur(s) : HAL CCSD
Résumé : International audience
BACKGROUND: The aim of this systematic review was to evaluate and compare the pros and cons of using living donors or brain-dead donors in uterus transplantation programs, 2 years after the first worldwide live birth after uterus transplantation. METHODS: The Medline database and the Central Cochrane Library were used to locate uterine transplantation studies carried out in human or nonhuman primates. All types of articles (case reports, original studies, meta-analyses, reviews) in English or French were considered for inclusion. RESULTS: Overall, 92 articles were screened and 44 were retained for review. Proof of concept for human uterine transplantation was demonstrated in 2014 with a living donor. Compared with a brain-dead donor strategy, a living donor strategy offers greater possibilities for planning surgery and also decreases cold ischemia time, potentially translating into a higher success rate. However, this approach poses ethical problems, given that the donor is exposed to surgery risks but does not derive any direct benefit. A brain-dead donor strategy is more acceptable from an ethical viewpoint, but its feasibility is currently unproven, potentially owing to a lack of compatible donors, and is associated with a longer cold ischemia time and a potentially higher rejection rate. CONCLUSIONS: The systematic review demonstrates that uterine transplantation is a major surgical innovation for the treatment of absolute uterine factor infertility. Living and brain-dead donor strategies are not mutually exclusive and, in view of the current scarcity of uterine grafts and the anticipated future rise in demand, both will probably be necessary.
Transplantation

hal-01447062
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01447062
DOI : 10.1097/TP.0000000000001481
PUBMED : 27607535

Éditeur(s) : HAL CCSD Elsevier
Résumé : TAG LITHO
In this study we attempt to understand the water storage variations in a karst aquifer on the Larzac Plateau (South of France) using absolute gravimetry. On this karst system, water input is exclusively rainfall and draining occurs at the Durzon perennial spring in a karstic valley. Our basis assumption is that water storage in the vadose zone (epikarst and infiltration zone) has a significant effect on surface gravity through Newtonian attraction. The karst aquifer is hence being monitored since January 2006 with monthly absolute gravity measurements at three sites. The gravity measurements are corrected for regional scale gravity using water storage models in order to obtain gravity variations related exclusively to the local water storage variations. The gravity variations exhibit an important seasonal component (10-15 mu gal corresponding to a variation of equivalent water stab thickness of similar to 24-36 cm). Water storage variation seen by gravimetry is not spatially uniform on the studied karst system, corroborating current geomorphologic observations and interpretations. Finally, we use a global mass balance consideration linking rainfall, evapotranspiration and spring discharge to provide a conceptual framework for the understanding of observed gravity variations.
ISSN: 0022-1694

hal-00411884
https://hal.archives-ouvertes.fr/hal-00411884
DOI : 10.1016/j.jhydrol.2008.06.020

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La pauvreté est une préoccupation à l’échelle mondiale et le tourisme international est envisagé comme un outil de lutte contre la pauvreté. Telle est la problématique abordée dans cette réflexion : qu’est-ce que la pauvreté ? Envisager le tourisme comme un remède nécessite d’abord de s’interroger sur la nature du mal. Il convient donc d’analyser dans un premier temps, la pauvreté sans la réduire à sa seule approche économique. La pauvreté est un concept multidimensionnel qui doit être étudié dans une démarche systémique.Le tourisme séduit les instances internationales et nombre de responsables politiques (aux échelles locale et nationale) par ses opportunités de développement. Le tourisme se distingue par sa capacité d’adaptation et de transformation des environnements d’accueil. Ce sont les consommateurs qui se déplacent chez les producteurs (les territoires d’accueil). Cette activité apporte donc des revenus directs pour les sociétés d’accueil. D’où la création d’emplois spécifiques et la stimulation des investissements. Cependant, si les potentialités économiques sont indéniables, il faut placer cette activité dans un véritable projet de développement pour qu’elle bénéficie aux territoires les plus pauvres.
Poverty is a global concern and international tourism is seen as a tool to fight against poverty. This is the issue addressed in this reflection: What is poverty? Consider tourism as a remedy requires first to question the nature of evil. It is therefore necessary to analyze at first, poverty without reducing to its economic approach. Poverty is a multidimensional concept, which should be studied in a systematic approach. Tourism attracted international institutions and many politicians (at local and national levels) by its development opportunities. Tourism is distinguished by its adaptability and its ability to transform host environments. These are consumers who move from producers (home territories). This activity therefore provides direct revenue for the host societies. Hence the tourism capabilities to create specific jobs and stimulate investment. However, if the economic potential is undeniable, this activity should be placed in a real development project that benefits the poorest territories.

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6578
http://journals.openedition.org/etudescaribeennes/6578

Éditeur(s) : Elsevier Science Bv
Résumé : Small-scale fisheries have traditionally received less research effort than large-scale fisheries and are generally under-studied in Europe. In spite of their comparatively low volume of catches and economic importance, small-scale fisheries are socially important and an integral part of the European coastal zone. Considering the high heterogeneity of situations and the paucity of quantitative data, we used an analytical methodology based on the comparative method. We carried out an analysis of small-scale fisheries (SSFs) in Europe based on a selection of nine case studies. Our objective was to obtain a comprehensive description of small-scale fleets covering different areas/fisheries/species, encompassing the diversity and specific conditions under which SSFs operate, in order to demonstrate the ecological and social sustainability of this often overlooked fisheries segment. A common approach formulated so that the case studies could be compared with the case histories of other competing users, required that for each set of criteria – technical, biological, socio-economic, and institutional – a set of relevant items and indicators was established. An analysis of characteristics common to the selected case studies is conducted and an attempt made to extend our comparisons to the whole of the European Union. Our results show that (as compared with large-scale fleets, their main competitor) small-scale fleets: (i) are composed of smaller vessels and, consequently, travel lower distances to fishing grounds, and are more reliant on coastal areas; (ii) have smaller crews (although the global employment figure is similar to that of large-scale fleets in Europe); (iii) use mostly, but not exclusively, passive gears; (iv) use multi-purpose fishing approaches, and can change the fish species they target during the year; (v) have lower extraction rates; (vi) have lower total capital investments (including fishing rights), turnover and costs; and (vii) have lower fuel consumption, making them less sensitive to changing oil prices. Dependence on subsidies is lower (viii). Involvement in fisheries management is variable, conservation and access regulation measures are largely local in origin. For the selected case studies, the most significant competitors are large-scale fleets, and recreational fisheries, but other sources of interaction (water quality, invasive species, etc.) cannot be ignored.
Fisheries Research (0165-7836) (Elsevier Science Bv), 2013-02 , Vol. 140 , P. 1-13

Droits : 2012 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/00118/22934/20757.pdf
DOI:10.1016/j.fishres.2012.11.008
http://archimer.ifremer.fr/doc/00118/22934/

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
This paper presents a synthesis of a multidisciplinary study carried out along the Nîmes Roman aqueduct, located in the southeast part of France. The study was motivated by archaeologists attempting to explain the partial destructions of only one aerial bridge of the aqueduct (Pont de la Lône). Given its close proximity to the Nîmes seismically active fault, a possible seismic origin for the destructions was invoked. Seismologists and structural engineers thus carried out a variety of field and numerical investigations to test the seismic hypothesis. Supporting field evidence was found first along the aerial bridge section of the aqueduct: broken stalactites, arch warping, cracks and destruction of the bridge just above a breast wall shortly after its construction. Secondly, the underground part of the canal was analysed: irregularity in the thickness of calcite deposits of the canal walls, presence of numerous cracks, horizontal shift of the otherwise linear structure of the canal and presence of calcite twins in the deposits, found only where the canal crosses the Nîmes fault system. Numerical modelling and experimental results show that (1) only the Pont de la Lône would have suffered serious damage under seismic solicitation (assuming an M6 earthquake at 10 km distance). The second aerial bridge, the three levels arches Pont du Gard, an historical monument still standing today, would have suffered less damage, due to its very different fundamental frequency of around 0.4 Hz, far from the amplified seismic near-field spectrum; (2) the numerical models also show that a fall of the canal wall would require a higher magnitude event (M > 6); (3) the presence of calcite twinning requires a differential static stress of 4 MPa or greater, which can only be achieved very close to the fault rupture of a M > 6 earthquake; (4) finally, local surface rupturing of such a fault would also corroborate the hypothesis that the observed offset of the canal may be partly seismically induced. Although other possible origins for each individual evidence may not be excluded, the observed spatiotemporal concentration of architectural/geological anomalies together with the numerical results allow us to support a possible co-seismic origin for these disorders, indirectly attesting to the potential seismic activity (M > 6) of the nearby Nîmes fault. Furthermore, following the conclusions of archaeological studies, the disorders occurred between 250 and 350 year AD, thus providing timing for this possible seismic event, an essential parameter in seismic hazard analysis. These results validate the archaeo-seismological approach as a tool that may help improve the knowledge of major infrequent earthquakes in areas of moderate seismic activity.
ISSN: 0921-030X

hal-00379064
https://hal.archives-ouvertes.fr/hal-00379064
DOI : 10.1007/s11069-008-9276-9

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La République de Trinidad-et-Tobago, située à l’extrême sud de l’arc des Petites Antilles fait figure d’exception dans la région Caraïbe. En effet, l’économie de l’île dépend presque exclusivement du secteur industriel et gazier, alors que le tourisme et l’agriculture participent peu au produit intérieur brut du pays, au contraire des autres îles caribéennes. Profitant d’un contexte international favorable, Trinidad connaît depuis deux décennies une croissance économique continue qui lui permet d’afficher des indices sociaux élevés, mais son économie garde les caractéristiques d’un Petit État Insulaire en Développement et elle doit faire face à des problèmes persistants de chômage et de pauvreté. C’est dans ce contexte que le gouvernement a initié une politique de diversification économique identifiant plusieurs domaines d’intervention, dont le tourisme, susceptible de réduire la pauvreté. L’objectif de cette étude est d’analyser les impacts et les limites d’actions touristiques pro-pauvres dans un petit état insulaire au travers d’une expérience menée dans le village de Matura, au nord-est de Trinidad.
The Republic of Trinidad and Tobago, located in the extreme south of the Lesser Antilles, is an exception in the Caribbean region. Indeed, unlike other Caribbean islands, the economy of Trinidad and Tobago depends almost exclusively on industrial and gas sector, while tourism and agriculture involved a small share of gross domestic product of the country.Taking advantage of a favorable international context, Trinidad known for two decades continued economic growth that allows it to display high social indices, but its economy keeps the characteristics of a Small State Islander Developing and faces problems of unemployment and poverty. It’s in this context that the government has initiated a policy of economic diversification identifying several areas of activity, including tourism, likely to reduce poverty. The objective of this study is to analyze the impacts and limitations of pro-poor tourism actions in a small island state through an experiment conducted in the village of Matura in the Northeast of Trinidad.
Trinité

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6535
http://journals.openedition.org/etudescaribeennes/6535

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Microbial genetic diversity is often investigated via the comparison of relatively similar 16S molecules through multiple alignments between reference sequences and novel environmental samples using phylogenetic trees, direct BLAST matches, or phylotypes counts. However, are we missing novel lineages in the microbial dark universe by relying on standard phylogenetic and BLAST methods? If so, how can we probe that universe using alternative approaches? We performed a novel type of multi-marker analysis of genetic diversity exploiting the topology of inclusive sequence similarity networks. Results: Our protocol identified 86 ancient gene families, well distributed and rarely transferred across the 3 domains of life, and retrieved their environmental homologs among 10 million predicted ORFs from human gut samples and other metagenomic projects. Numerous highly divergent environmental homologs were observed in gut samples, although the most divergent genes were over-represented in non-gut environments. In our networks, most divergent environmental genes grouped exclusively with uncultured relatives, in maximal cliques. Sequences within these groups were under strong purifying selection and presented a range of genetic variation comparable to that of a prokaryotic domain. Conclusions: Many genes families included environmental homologs that were highly divergent from cultured homologs: in 79 gene families (including 18 ribosomal proteins), Bacteria and Archaea were less divergent than some groups of environmental sequences were to any cultured or viral homologs. Moreover, some groups of environmental homologs branched very deeply in phylogenetic trees of life, when they were not too divergent to be aligned. These results underline how limited our understanding of the most diverse elements of the microbial world remains, and encourage a deeper exploration of natural communities and their genetic resources, hinting at the possibility that still unknown yet major divisions of life have yet to be discovered.
ISSN: 1745-6150

Droits : http://creativecommons.org/licenses/by/
hal-01257771
http://hal.upmc.fr/hal-01257771
http://hal.upmc.fr/hal-01257771/document
http://hal.upmc.fr/hal-01257771/file/s13062-015-0092-3.pdf
DOI : 10.1186/s13062-015-0092-3

Éditeur(s) : Academic Press Ltd- Elsevier Science Ltd
Résumé : Antioxidant defences and induced oxidative stress tissue damage of the blue shrimp Litopenaeus stylirostris, under challenge with Vibrio nigriputchritudo, were investigated for a 72-h period. For this purpose, L stylirostris were first infected by immersion with pathogenic V. nigripulchritudo strain SFn1 and then antioxidant defences: superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (Gpx), Total antioxidant status (TAS), glutathiones and induced tissue damage (MDA and carbonyl proteins) were determined in the digestive gland at 0, 12, 24, 48 and 72 h post-infection (h.p.i.). In the meantime, TAS was also measured in the blood. Infection level of the shrimps during the challenge was followed by determining V. nigripulchritudo prevalence and load in the haemolymph of the shrimps. Changes in all these parameters during the 72-h.p.i. period were recorded for control shrimps and shrimps previously fed for one month with probiotic Pediococcus aciditactici MA18/5M at 10(7) CFU g(-1) of feed. Our results showed that immersion with V nigripulchritudo led to maximal infection level in the haemolymph at 24 h.p.i. preceding the mortality peak recorded at 48 h.p.i. Significant decreases in the antioxidant defences were detected from 24 h.p.i. and beyond that time infection leaded to increases in oxidative stress level and tissue damage.. Compared to control group, shrimps fed the probiotic diet showed lower infection (20% instead of 45% at 24 h.p.i. in the control group) and mortality (25% instead of 41.7% in the control group) levels. Moreover, infected shrimp fed the probiotic compared to uninfected control shrimps exhibited very similar antioxidant status and oxidative stress level. Compared to the infected control group, shrimps fed the probiotic sustained higher antioxidant defences and lower oxidative stress level. This study shows that bacterial infection leads to oxidative stress in L. stylirostris and highlighted a beneficial effect of P. acidilactici, suggesting both a competitive exclusion effect leading to a reduction of the infection level and/or an enhancement of the antioxidant status of the shrimps. (C) 2010 Elsevier Ltd. All rights reserved.
Fish & Shellfish Immunology (1050-4648) (Academic Press Ltd- Elsevier Science Ltd), 2010-04 , Vol. 28 , N. 4 , P. 622-631

Droits : 2010 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00003/11419/7984.pdf
DOI:10.1016/j.fsi.2009.12.024
http://archimer.ifremer.fr/doc/00003/11419/

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The giant bathymodioline mussels from vents have been studied as models to understand the adaptation of organisms to deep-sea chemosynthetic environments. These mussels are closely related to minute mussels associated to organic remains decaying on the deep-sea floor. Whereas biological data accumulate for the giant mussels, the small mussels remain poorly studied. Despite this lack of data for species living on organic remains it has been hypothesized that during evolution, contrary to their relatives from vents or seeps, they did not acquire highly specialized biological features. We aim at testing this hypothesis by providing new biological data for species associated with organic falls. Within Bathymodiolinae a close phylogenetic relationship was revealed between the Bathymodiolus sensu stricto lineage (i.e. ``thermophilus'' lineage) which includes exclusively vent and seep species, and a diversified lineage of small mussels, attributed to the genus Idas, that includes mostly species from organic falls. We selected Idas iwaotakii (Habe, 1958) from this latter lineage to analyse population structure and to document biological features. Mitochondrial and nuclear markers reveal a north-south genetic structure at an oceanic scale in the Western Pacific but no structure was revealed at a regional scale or as correlated with the kind of substrate or depth. The morphology of larval shells suggests substantial dispersal abilities. Nutritional features were assessed by examining bacterial diversity coupled by a microscopic analysis of the digestive tract. Molecular data demonstrated the presence of sulphur-oxidizing bacteria resembling those identified in other Bathymodiolinae. In contrast with most Bathymodiolus s.s. species the digestive tract of I. iwaotakii is not reduced. Combining data from literature with the present data shows that most of the important biological features are shared between Bathymodiolus s.s. species and its sister-lineage. However Bathymodiolus s.s. species are ecologically more restricted and also display a lower species richness than Idas species.
ISSN: 1932-6203

hal-01545914
https://hal.archives-ouvertes.fr/hal-01545914
DOI : 10.1371/journal.pone.0069680

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
The evolutionary origin of teeth from dermal denticles (odontodes) that developed in the mouth cavity, designated as outside-in hypothesis, has long been undisputed. The outside-in hypothesis is based on the conclusion that dermal denticles and teeth fulfil the criteria of homology in an exemplary manner. Over the past 15 years, this hypothesis has been challenged. Proponents of the alternative inside-out hypothesis suggest that teeth did not evolve from dermal denticles, that they are of endodermal origin (forming in conjunction with neural crest-derived mesenchyme) and that they evolved several times independently in different lineages of vertebrates. Key arguments for the inside-out hypothesis are mineralized structures of conodonts that are accepted as teeth, the exclusive acceptance of placoderm pharyngeal denticles as teeth, together with the rejection of the presence of teeth in basal placoderms. We summarize the results of recent studies that have been triggered by the fruitful discussion between the two conflicting hypotheses. New findings support the traditional outside-in hypothesis: the mineralized elements of conodonts are not teeth, and the oral cusps in basal placoderms are true teeth. Furthermore, new developmental and molecular data clarify homology between teeth and dermal denticles. Today a new synthesis is emerging about the evolutionary origin of teeth from dermal denticles and about the unity of the elements of the dermal skeleton.
ISSN: 0175-8659

hal-01545480
https://hal.archives-ouvertes.fr/hal-01545480
DOI : 10.1111/jai.12532