Éditeur(s) : HAL CCSD
Résumé : Annual report
We present here the results of CRS reprocessing of a 3D real dataset acquired in 2001 on the Tournemire site in France, which is an experimental site for the Institut de Radioprotection et de Sûreté Nucléaire (IRSN) to test geophysical imaging process in the context of geological nuclear waste storage. The main objective was to evaluate the ability of the methodology to recognize, in the carbonate cover of the experimental site clay layer, the prolongation of weak vertical-displacement faults seen in a tunnel within that clay layer. Previous seismic processing using the conventional common midpoint (CMP) approach did not provide satisfactory results in this cover, although the fault has beenrecognized in the carbonates underlying the clay layer. An original strategy was elaborated to define the best-possible parameters of the 3D Common-Reflection-Surface (CRS) stack. The procedure in- cluded refining the velocity search along a velocity guide, using a first CRS stack as the base of a subsequent curvature-parameter search, or a parameter smoothing before stacking. An optimal ap- proach was elaborated on a subset of the data, and furthermore applied to the whole dataset. The resulting image shows improved event continuity in the carbonate cover, which allowed for horizon picking after depth migration, as well as the estimation of post-stack geometrical attributes, such as coherency. The processing indicates a zone of degraded quality of reflection events lying in the N-S direction, above the known fault zone within the underlying formations. Such feature corresponds to an alteration zone at the earth surface. Further investigation at a higher resolution scale is planned to confirm whether this zone could be a spot of possible leakage
https://hal.archives-ouvertes.fr/hal-00857376

hal-00857376
https://hal.archives-ouvertes.fr/hal-00857376

Résumé : By looking at the common thread between 4 programs* in which the IFREMER Palavas (34, Languedoc-Roussillon region in France) station took part, this report show the evolution over 20 years in the perception of the pathology of farmed fish, and of the sea bass in particular (Dicentrarchus labrax). During the 1990’s farming techniques became sufficiently reliable to enable to distinguish between problems of a zootechnical nature and those with a pathological origin. In anticipation of future illnesses, the necessary tools and monitoring were implemented in order to study the immune system of the sea bass. These methods arose from the recent creation of anti-immunoglobin monoclonal probes in the sea bass. These techniques, together with others, served to search for a solution to the nodavirus epidemic which struck in1996. In the absence of a cure for this virus, the research focused on knowledge of the virus, its epidemiology and vaccine development. Despite interesting scientific results, the solution withheld to curb the Nodavirus epidemic was zootechnical. This pragmatic outcome catalysed reflections on the role of pathology, leading to notions of health, animal well-being and image. Management choices in the health of farmed fish stocks became a parameter, amongst others, included in a global commercial and farming policy. * Définition des critères d’évaluation de l’immunocompétente chez le loup et le turbot. UMR1 Université Montpellier II IFREMER ; Nodavirus disease of cultured marine fish in Europe. FAIR PL98 4036 EU; Recherche de moyens de dépistage et prévention de la nodavirose du bar. ANVAR 9804041J ; Welfare and Health in Sustainable Aquaculture WEALTH. E.U N°501984.
En prenant comme fil conducteur les travaux de 4 programmes* auxquels a participé la station IFREMER de Palavas (34), ce rapport montre l’évolution sur 20 ans de la perception de la pathologie des poissons d’élevages et du loup en particulier (Dicentrarchus labrax). Dans les années 1990 les techniques d’élevages devinrent suffisamment fiables pour permettre de distinguer les problèmes d’origines zootechniques de ceux d’origines pathologiques. En prévision des futures maladies potentielles, les outils d’étude et de suivi du système immunitaire spécifique du loup furent mis en place. Ils découlaient de la création récente de sondes monoclonales anti-immunoglobulines de loup. Ces techniques, couplées à d’autres, servirent à chercher une solution à l’épidémie de nodavirose des années 1996. En l’absence de traitement pour un virus l’accent fut mis sur la connaissance du virus, de son épidémiologie et de la vaccination. Bien que les résultats scientifiques furent très satisfaisants la solution trouvée pour juguler l’épidémie de Nodavirose fut zootechnique. Cette issue pragmatique catalysa une réflexion sur le rôle de la pathologie qui maturait depuis plusieurs années et qui déboucha sur la notion de santé, de bien être des animaux et d’image. Les choix de gestion de la santé des cheptels devinrent un paramètre, parmi d’autres, s’incluant dans d’une politique globale d’élevage et commerciale * Définition des critères d’évaluation de l’immunocompétente chez le loup et le turbot. UMR1 Université Montpellier II IFREMER ; Nodavirus disease of cultured marine fish in Europe. FAIR PL98 4036 EU; Recherche de moyens de dépistage et prévention de la nodavirose du bar. ANVAR 9804041J ; Welfare and Health in Sustainable Aquaculture WEALTH. E.U N°501984.

Droits : 2013 Ifremer
http://archimer.ifremer.fr/doc/00167/27866/26103.pdf
http://archimer.ifremer.fr/doc/00167/27866/26105.pdf
http://archimer.ifremer.fr/doc/00167/27866/26106.pdf
http://archimer.ifremer.fr/doc/00167/27866/

Éditeur(s) : Wiley-blackwell
Résumé : 1. Approximately 300 pelagic fish species naturally aggregate around floating objects (FOBs) at the surface of the oceans. Currently, more than 50% of the world catch of tropical tuna comes from the industrial tuna fisheries around drifting FOBs. Greater understanding of the complex decision-making processes leading to this aggregation pattern and the impact of the massive release of artificial FOBs by fishermen on the spatial distribution and management of tuna is needed. 2. We analyse how the interplay between social (relationships between individuals) and non-social (responses to the environment) behaviours may affect the spatial distribution of a population in a multi-FOB environment. Taking the example of tropical tunas associating with FOBs and using differential equations and stochastic simulations, we examine how, when increasing the number of FOBs, fish aggregation dynamics and the distribution of the population among patches are affected by the population size, level of sociality and the natural retentive and/or attractive forces of FOBs on individual tuna. 3. Our model predicts that, depending on the species' level of sociality, fish will be scattered among FOBs or aggregated around a single FOB based on the number of FOBs deployed in a homogeneous oceanic region. 4. For social species, we demonstrated that the total fish catch is reduced with increasing FOBs number. Indeed, for each size of population, there are a number of FOBs minimizing the total population of fish associated with FOBs and another number of FOBs maximizing the total population of associated fish. 5. Synthesis and applications. In terms of fisheries management, the total catch volume is directly linked to the total number of floating objects (FOBs) for non-social species, and any limit on the number of sets would then result in a limit on the total catch. For social species (e.g. tuna), however, increasing the number of FOBs does not necessarily lead to an increase in the total catch, which is a non-intuitive result. Indeed, our model shows that, for specific values of the parameters, deploying a greater number of FOBs in the water (all other parameters being constant) does not necessarily help fishermen to catch more tuna, but does increase the level of fishing effort and bycatch.
Journal Of Applied Ecology (0021-8901) (Wiley-blackwell), 2013-10 , Vol. 50 , N. 5 , P. 1081-1092

Droits : 2013 The Authors. Journal of Applied Ecology, 2013 British Ecological Society
http://archimer.ifremer.fr/doc/00151/26275/24439.pdf
DOI:10.1111/1365-2664.12140
http://archimer.ifremer.fr/doc/00151/26275/

Éditeur(s) : Soc Francaise D Ichtyologie
Résumé : Age is a necessary parameter used in population dynamics to assess the state of exploited resources. This parameter is poorly known for most deep-sea species (depth > 400 m). This work focused on age estimation from otoliths of Alepocephalus bairdii (Alepocephalidae), Coryphaenoides rupestris (Macrouridae), Helicolenus dactylopterus (Sebastidae) and Hoplostethus atlanticus (Trachichthyidae), which French fishery exploitation, off the west coasts of the British Isles, began the late 1980's. Considering otolith growth zones as annual, the four species all show high longevity: 38, 54, 43 and 130 years, respectively, together with slow growth. The differences in growth between sex were estimated and difficulties in accurately estimating the age were highlighted and showed the need to standardise and validate age estimation. The ages currently estimated for deep-sea fish must be used with caution.
Cybium (0399-0974) (Soc Francaise D Ichtyologie), 2000 , Vol. 24 , N. 3 , P. 7-16

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00000/10396/7690.pdf
http://archimer.ifremer.fr/doc/00000/10396/

Éditeur(s) : HAL CCSD IOS Press
Résumé : International audience
Little is known about the impact of blood rheology on the occurrence of retinopathy in sickle cell disease (SCD). Fifty-nine adult SCD patients in steady-state condition participated to the study: 32 with homozygous SCD (sickle cell anemia; SCA) and 27 with sickle cell hemoglobin-C disease (SCC). The patients underwent retinal examination and were categorized according to the classification of Goldberg: 1) no retinopathy (group 1), 2) non-proliferative or proliferative stage I-II retinopathy (group 2) and 3) proliferative stage III-IV-V retinopathy (group 3). Hematological and hemorheological (whole blood viscosity, RBC deformability and aggregation properties) measurements were performed for each patient. In the whole SCD group (SCA + SCC patients) and in SCC patients, the group 3 had higher platelets count than group 2 but the difference between group 3 and group 1 did not reach statistical significance. No difference was observed for the other parameters between the three groups. SCC patients from the group 3 exhibited higher whole blood viscosity than SCC patients from the group 1. No significant difference was observed between the three groups in SCA patients. This study revealed that severe sickle proliferative retinopathy is associated with blood hyperviscosity in SCC patients but not in SCA patients.
ISSN: 1386-0291

inserm-00849032
http://www.hal.inserm.fr/inserm-00849032
http://www.hal.inserm.fr/inserm-00849032/document
http://www.hal.inserm.fr/inserm-00849032/file/inserm-00849032.pdf
DOI : 10.3233/CH-2012-1622

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Il s’agit d’étudier la Caraïbe par une approche heuristique qui saisisse l’identité régionale en termes de mouvements, de mobilité, de flux et d’influences en tous genres et non pas simplement de structures statiques. Cette démarche qui dépasse l’observation traditionnelle et étriquée de l’espace sédentaire permet de mieux appréhender les connexions entre unités qui composent la région ainsi que les sphères d’influences et les emboîtements d’échelle qui vont du micro-local au global. Les notions de « mouvement » et de « mouvance » que nous proposons ici de conceptualiser pour penser notre périmètre d’étude dans cette perspective dynamique se situent au carrefour de plusieurs disciplines mais s’inscrivent plus particulièrement dans le champ d’investigation de la Géopolitique.
This paper approaches regional identity in the Caribbean in heuristic terms that imply the paradigms of movement, mobility, flux and diverse influences that are not limited to frame of fixed parameters. Our rationale consists in going beyond the traditional observation of a sedentary space, in order to better our perception of the connexions that join the different units composing the region, and apprehend the spheres of influence or scales of inclusion that range from micro-local to global. The notions of “movement” and “mouvance” that we suggest conceptualizing here in order to apprehend our object in a dynamic way, even though linked with a transdisciplinary approach, derive their validity from the inscription in the field of Geopolitics.
Caraïbes

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.5739
http://journals.openedition.org/etudescaribeennes/5739

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The estrogen receptor (ER) is a transcription factor that binds under 17-b-estradiol (E2) stimulation as homodimer to a short DNA consensus sequence named estrogen response element (ERE). The ER/ERE interaction has been assessed by several research groups through different methodologies notably by surface plasmon resonance (SPR) techniques. The biochemical parameters and conditions (solvent, ER concentration, salt, time and temperature) used to prepare samples before analysis were very different from one study to another. But no studies have aimed to compare the effect of these modifications on ER/ERE interaction. Therefore the main objective of the present paper was to assess the influence of biochemical parameters onto the ER/ERE interaction with the final aim to improve the comprehension of this interaction. Our results highlighted that parameters like solvent, ER concentration, salt and surfactant concentration, temperature and time deeply modify ER/ERE interaction. Nevertheless, the dimer formation under E2 stimulation occurred with all tested conditions. Altogether, incubation parameters of ER with E2, deeply modify its binding level onto ERE. These data constitute an important key point to consider for the improvement of ER/ERE detection method depending upon the aim of the study (interaction measurement, environmental detection, development of new technologies or devices).
ISSN: 0003-9861

hal-00936061
https://hal.archives-ouvertes.fr/hal-00936061
https://hal.archives-ouvertes.fr/hal-00936061/document
https://hal.archives-ouvertes.fr/hal-00936061/file/Impactsur biochemical_design_on_estrogen_receptor_estrogen_response_element_interaction_by_surface_plasmon_resonance_technology-accepted.pdf
DOI : 10.1016/j.abb.2013.11.006

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : International audience
We studied the monogenean communities of 34 species of butterflyfish from the tropical Indo-West Pacific, identifying 13 dactylogyrid species (including two species that are presently undescribed). Monogenean assemblages differed significantly between host species in terms of taxonomic structure, intensity and prevalence. Parasite richness ranged from 0 (Chaetodon lunulatus) to 11 (C. auriga, C. citrinellus and C. lunula). Host specificity varied between the dactylogyrids species, being found on 2-29 of the 34 chaetodontid species examined. Sympatric butterflyfish species were typically parasitized by different combinations of dactylogyrid species, suggesting the existence of complex host-parasite interactions. We identified six clusters of butterflyfish species based on the similarities of their dactylogyrid communities. Dactylogyrid richness and diversity were not related to host size, diet specialization, depth range or phylogeny of butterflyfish species. However, there was a weak positive correlation between monogenean richness and diversity and host geographical range. Most communities of dactylogyrids were dominated by Haliotrema aurigae and H. angelopterum, indicating the importance of the genus Haliotrema in shaping monogenean communities of butterflyfishes. This study casts light on the structure of the monogenean communities of butterflyfishes, suggesting that the diversity and complexity of community structures arises from a combination of host species-specific parameters.
ISSN: 0031-1820

hal-01380679
https://hal-univ-perp.archives-ouvertes.fr/hal-01380679
DOI : 10.1017/S0031182016001463

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Experimentally Assisted Molecular Modelling (EAMM) is an original approach for predicting the structure of organic micro-crystals and deducing their habit in the presence of various solvents and additives. It is applied here in the case of n-octylamino-nitrobenzoxadiazole (nOA-NBD), a fluorescent compound. This general approach is first of all described and validated by its blind application to three known and closely-related crystals. Then, the whole process is applied to predict the molecular crystal generated by n-octylamino-NBD, including the molecule conformation, its structure (cell parameters, molecular packing, X-ray powder diagrams) and its theoretical plus actual habits in the presence of a solvent (p-xylene) and two additives (acetic acid and n-dodecane). The conformation of the predicted molecule is validated by comparison with two similar molecules embedded in observable crystals. Then, the choice between two proposed structures (with the same energy and two equiprobable packings) is based on the comparison between experimental and re-computed X-ray powder diffraction diagrams, and also on the interpretation of an actual TEM image in the light of the proposed cell parameters. This choice is confirmed by the comparison between the vapour-grown face development (proposed by the BFDH or the attachment energy models) and the actual face development in a pure solvent. Finally, the actual habit deduced from comparing the crystal attachment energy with the adsorption energy of solvent or additive molecules is validated by SEM images of NBD micro-crystals in presence of the solvent alone or in presence of both additives. In conclusion, the EAMM approach appears to be a decisive tool for quickly simulating structural and habit properties of the molecular crystals, accessible or not by experimentation. Thus, a numerical selection of molecules becomes possible in view of deriving organic materials with predetermined properties, such as the fluorescence properties of the compound considered in the present study.
ISSN: 0022-0248

hal-00857894
https://hal.archives-ouvertes.fr/hal-00857894
DOI : 10.1016/j.jcrysgro.2011.07.035

Éditeur(s) : HAL CCSD Royal Society of Chemistry
Résumé : International audience
A full equilibrium treatment of molecular aggregation is presented for prototypes of 1D and 3D aggregates, with and without nucleation. By skipping complex kinetic parameters like aggregate size-dependent diffusion, the equilibrium treatment allows to predict directly time-independent quantities such as critical concentrations. The relationships between the macroscopic equilibrium constants for the different paths are first established by statistical corrections and so as to comply with the detailed balance constraints imposed by nucleation, and the composition of the mixture resulting from homogeneous aggregation is then analyzed using the polylogarithm function. Several critical concentrations are distinguished: the residual monomer concentation in equilibrium (RMC) and the critical nucleation concentration (CNC), that is the threshold concentration of total subunits necessary for initiating aggregation. When increasing the concentration of total subunits, the RMC converges more strongly to its asymptotic value, the equilibrium constant of depolymerization, for 3D aggregates and in case of nucleation. The CNC moderately depends on the number of subunits in the nucleus, but sharply increases with the difference between the equilibrium constants of polymerization and nucleation. As the RMC and CNC can be numerically but not analytically determined, ansatz equations connecting them to thermodynamic parameters are proposed
PCCP : Physical chemistry chemical physics

Droits : info:eu-repo/semantics/OpenAccess
hal-01565995
https://hal.archives-ouvertes.fr/hal-01565995
https://hal.archives-ouvertes.fr/hal-01565995/document
https://hal.archives-ouvertes.fr/hal-01565995/file/Aggregates_in_equilibrium.pdf
DOI : 10.1039/c6cp08369b

Éditeur(s) : HAL CCSD
Résumé : A standard approach for large scale image classification involves high dimensional features and Stochastic Gradient Descent algorithm (SGD) for the minimization of classical Hinge Loss in the primal space. Although complexity of Stochastic Gradient Descent is linear with the number of samples these method suffers from slow convergence. In order to cope with this issue, we propose here a Stochastic Low-Rank Newton Descent SLND for minimization of any calibrated loss in the primal space. SLND approximates the inverse Hessian by the best low-rank approximation according to squared Frobenius norm. We provide core optimization for fast convergence. Theoretically speaking, we show explicit convergence rates of the algorithm using these calibrated losses, which in addition provide working sets of parameters for experiments. Experiments are provided on the SUN, Caltech256 and ImageNet databases, with simple, uniform and efficient ways to tune remaining SLND parameters. On each of these databases, SLND challenges the accuracy of SGD with a speed of convergence faster by order of magnitude.
https://hal.archives-ouvertes.fr/hal-00825414

hal-00825414
https://hal.archives-ouvertes.fr/hal-00825414
https://hal.archives-ouvertes.fr/hal-00825414/document
https://hal.archives-ouvertes.fr/hal-00825414/file/TechnicalReport.pdf

Éditeur(s) : HAL CCSD Wiley
Résumé :  
The forests in Cat Tien National Park, appear as a mosaic of different communities, distinct from each other with respect to their floristic and structural parameters. The objectives of this study are (1) to characterize the different formations occurring in the lowland part and (2) to identify the main successional trends in the area. Understanding forest succession is important for silviculture and restoration of forests and land rehabilitation, as adequate information on the ecological role of local species in the functioning of the forests is not available in Vietnam. Five plots (1 ha each) were established in the lowland part of Cat Tien National Park, where all the trees ≥ 10 cm d.b.h. (diameter at breast height) were located, measured and identified. A systematic sampling was made to assess the regeneration. Three plots (A, C and D) can be considered as secondary forests on the basis of their structural parameters. Plots A and C are dominated by Lagerstrmia calyculata and plot D by Dipterocarpus alatus. The other two plots can be regarded as mature forests. Plot B corresponds to a semideciduous formation dominated by Lagerstrmia calyculata and Fabaceae species, and plot E to an evergreen one dominated by dipterocarp species. The floristic composition of plots A and C will change in the future because dominant canopy species are rare or absent in regeneration. A correspondence analysis performed on the number of trees per species shows two kinds of successional trends: one from A to B on shallow and drier soils, and another from C to E on deeper and wetter soils.
ISSN: 0305-0270

hal-01032094
https://hal.archives-ouvertes.fr/hal-01032094
DOI : 10.1046/j.1365-2699.2000.00347.x

Éditeur(s) : HAL CCSD
Résumé : SilviLaser 2015, La Grande Motte, FRA, 28-/09/2015 - 30/09/2015
International audience
The study provides technical guidelines to optimize sampling design parameters in the context of the implementation of biomass predictive models from airborne lidar data. Parameters under study were those easily controlled when implementing an area-based approach, i.e. lidar pulse density and both field sampling protocols and measurements. Parameters most impacting the model accuracy were identified by conducting a one-factor- at -a-time and a global sensitivity analyses. Number and size of field plot, and plot center position accuracy were identified to be the parameters most impacting model accuracy.
Proceedings of silviLaser 2015. Durrieu S. et Véga, C. (eds)
La Grande Motte, France

hal-01286833
https://hal.archives-ouvertes.fr/hal-01286833
https://hal.archives-ouvertes.fr/hal-01286833/document
https://hal.archives-ouvertes.fr/hal-01286833/file/mt2015-pub00046522.pdf
IRSTEA : PUB00046522

Éditeur(s) : HAL CCSD
Résumé : The field campaign on the Sète coast deployed during the winter 2009 was used to understand the hydrodynamics on a double barred beach in the surf zone during storm periods. The large set of measurements collected at several position and depth were also useful to improve the 3D circulation model Symphonie that takes into account the atmospherics and wave forcings. Once implemented on the beach and supplemented with some additional parameterizations concerning the roller effects and the bottom friction, the model was tuned and validated in the surf zone. The role of the different processes was then analysed. Thus, the roller and the bottom friction are of primary importance in the dynamics of the circulation. Thanks to its 3D nature and once associated with a sediment transport model and a morphodynamic model, Symphonie will offer a good representation of the sediment transport.
Coastal Dynamics 2013
Arcachon, France

hal-00855035
https://hal.archives-ouvertes.fr/hal-00855035

Éditeur(s) : HAL CCSD Oxford University Press (OUP): Policy P - Oxford Open Option A Oxford University Press (OUP)
Résumé : International audience
It is well known that sedimentary rocks having same porosity can have very different pore size distribution. The pore distribution determines many characteristics of the rock, among which its transport properties are often the most useful. Multifractal analysis is a powerful tool that is increasingly used to characterize the pore space. In this study, we performed multifractal analysis of pore distribution on simulated sedimentary rocks using the relaxed bidisperse ballistic deposition model (RBBDM). The RBBDM can generate a 3-D structure of sedimentary rocks of variable porosity by tuning the fraction p of particles of two different sizes. We also performed multifractal analysis on two samples of real sedimentary rock to compare with the simulation studies. One sample, an oolitic limestone is of high porosity (40 per cent) while the other is a reefal carbonate of low porosity, around 7 per cent. 2-D sections of X-ray microtomographs of the real rocks were stacked sequentially to reconstruct the real rock specimens. Both samples show multifractal character. The results from analysis of real rock agree quite well with the simulated structure of low porosity. The simulated rock of high porosity showed a weak multifractal nature though the real rock sample of similar porosity was found to be strongly multifractal. We propose a ‘structure parameter’ ξ which is a function of porosity and the generalized dimensions, and controls the transport properties of the rock.
ISSN: 0956-540X

hal-01174142
https://hal.archives-ouvertes.fr/hal-01174142
DOI : 10.1093/gji/ggu417

Éditeur(s) : HAL CCSD
Résumé : International audience
The published literature related to distributed parameter systems theoryis quite large, and it is not feasible in a single book to give a detailedreview on the wide historical development of all of it. Our choice of whatto cover was motivated by the following consideration. Since distributedparameter systems evolve in time and space, the research investigationson their analysis and control focus on considering the whole system domainfor any study. We feel strongly that within this research field, animportant consideration was missing; that of considering that the systemmay give raise to prescribed subdomains (regions) where one has toachieve an objective. This is the case of so many applications rangingfrom engineering to life sciences. For that reason, covering classical prerequisitein analysis and control areas, we have devoted the book to theextension of the classical distributed parameter results to regional ones.Students of mathematics do not come into contacts with distributedparameter systems during their classes. They are introduced to themwhen they start research and often they are influenced by the knowledgeand the advice of experimented scientists. This was our case at the verybeginning of these research investigations in the mid 70’s. We would liketo express our special thanks to many of them and mainly late ProfessorAnthony J. Pritchard (University of Warwick, GB) and late Professor J.L. Lions (College de France) who were so encouraging in front of our determinationin driving an academic carrier. We also express our thanksto our co-workers and research students. We wish to acknowledge thefeedback from all those who took courses based on various parts of thisbook.This book may be used by graduate students in mathematics, engineering,physics, and even by students from other fields such as life orenvironmental sciences. This book may also be used as an informationvi Avant-propossource for researchers and education professionals. We assume that thereaders already know the basic concepts of analysis and control of distributedparameter systems.
https://hal.archives-ouvertes.fr/hal-01297261

ISBN : 978-2-35412-140-2
hal-01297261
https://hal.archives-ouvertes.fr/hal-01297261

Éditeur(s) : HAL CCSD
Résumé : To understand the effect of inherited lithospheric structures on the continental plates deformation process, we have developed a multi scale model that explicitly takes into account an anisotropic viscosity due to the Crystal Preferred Orientation (CPO) of olivine in the mantle by coupling a viscoplastic self-consistent simulation of the deformation at the polycrystalline aggregate to a 3D Finite Element code. Using this tool, we calculate the mechanical behavior of a continental lithosphere submitted to extension for various initial structures. The first set of experiments investigates the deformation of a plate with a homogeneous initial olivine CPO. Results show that the macroscopic anisotropy is strongly dependent on the initial orientation of the olivine CPO relative to the solicitation and to its evolution. The second set of experiments aims to analyze the deformation of a continental plate containing pre-existing lithospheric scale shear zones. These multi-domain models show that the olivine mechanical anisotropy may induce the reactivation of pre-existing lithospheric scale shear zones in a plate submitted to rifting. In both cases, the results shows that the macroscopic mechanic anisotropy induced by the evolution of olivine CPO in the upper mantle is a key parameter to understand the deformation of the continental plates and to explain the observed reactivation of inherited structure from past tectonics events
Afin de comprendre l'effet des structures préexistantes sur la déformation des plaques continentales, nous avons développé une méthode de modélisation mécanique multi-échelle utilisant une viscosité anisotrope induite par les Orientations Préférentielles du Réseau (OPR) des cristaux d'olivine présents dans le manteau. Cette méthode en couple le calcul viscoplastique autocohérent de la déformation d'un agrégat d'olivine à un code éléments finis 3D. Elle a été utilisée pour le calcul du comportement mécanique d'une plaque continentale soumise à une extension. Une première série d'expériences numériques sur l'extension de plaque lithosphérique présentant des OPR initiales d'olivine homogènes a permis de montrer que l'anisotropie mécanique macroscopique est fortement dépendante de l'orientation initiale de l'OPR. La seconde série de simulations analyse l'extension d'une plaque continentale présentant une zone présentant des OPR d'olivine héritées d'un événement tectonique précédant. Les résultats de ces calculs multi-domaines que l'anisotropie mécanique de l'olivine peut expliquer la réactivation des zones de cisaillement héritées lors du rifting. Les résultats obtenus dans les deux séries de modèles montrent que l'anisotropie mécanique macroscopique induite par l'évolution des OPR d'olivine dans le manteau supérieur est un paramètre clé pour la compréhension de la déformation des plaques continentales et pour expliquer la réactivation observée de structures tectoniques, tels que les grands décrochements, lors des épisodes tectoniques ultérieurs.
https://tel.archives-ouvertes.fr/tel-00369463

tel-00369463
https://tel.archives-ouvertes.fr/tel-00369463
https://tel.archives-ouvertes.fr/tel-00369463/document
https://tel.archives-ouvertes.fr/tel-00369463/file/KnollThese09.pdf

Éditeur(s) : HAL CCSD Society for Range Management
Résumé : Grasslands and agroecosystems occupy one-third of the terrestrial area, but their contribution to the global carbon cycle remains uncertain. We used a set of 316 site-years of CO(2) exchange measurements to quantify gross primary productivity, respiration, and light-response parameters of grasslands, shrublands/savanna, wetlands, and cropland ecosystems worldwide. We analyzed data from 72 global flux-tower sites partitioned into gross photosynthesis and ecosystem respiration with the use of the light-response method (Gilmanov, T. G., D. A. Johnson, and N. Z. Saliendra. 2003. Growing season CO(2) fluxes in a sagebrushsteppe ecosystem in Idaho: Bowen ratio/energy balance measurements and modeling. Basic and Applied Ecology 4:167-183) from the RANGEFLUX and WORLDGRASSAGRIFLUX data sets supplemented by 46 sites from the FLUXNET La Thuile data set partitioned with the use of the temperature-response method (Reichstein, M., E. Falge, D. Baldocchi, D. Papale, R. Valentini, M. Aubinet, P. Berbigier, C. Bernhofer, N. Buchmann, M. Falk, T. Gilmanov, A. Granier, T. Grunwald, K. Havrankova, D. Janous, A. Knohl, T. Laurela, A. Lohila, D. Loustau, G. Matteucci, T. Meyers, F. Miglietta, J.M. Ourcival, D. Perrin, J. Pumpanen, S. Rambal, E. Rotenberg, M. Sanz, J. Tenhunen, G. Seufert, F. Vaccari, T. Vesala, and D. Yakir. 2005. On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm. Global Change Biology 11: 1.424-1439). Maximum values of the quantum yield (alpha = 75 mmol.mol(-1)), photosynthetic capacity (A(max) = 3.4 mg CO(2) . m(-2).s-1), gross photosynthesis (P(g,max) = 1.16 g CO(2) . m(-2).d(-1)), and ecological light-use efficiency (epsilon(ecol) = 59 mmol . mol(-1)) of managed grasslands and high-production croplands exceeded those of most forest ecosystems, indicating the potential of nonforest ecosystems for uptake of atmospheric CO(2). Maximum values of gross primary production (8 600 g CO(2) . m(-2).yr(-1)), total ecosystem respiration (7 900 g CO(2) . m(-2).yr(-1)), and net CO(2) exchange (2 400 g CO(2) . m(-2).yr(-1)) were observed for intensively managed grasslands and high-yield crops, and are comparable to or higher than those for forest ecosystems, excluding some tropical forests. On average, 80% of the nonforest sites were apparent sinks for atmospheric CO(2), with mean net uptake of 700 g CO(2) . m(-2).yr(-1) for intensive grasslands and 933 g CO(2) . m(-2).d(-1) for croplands. However, part of these apparent sinks is accumulated in crops and forage, which are carbon pools that are harvested, transported, and decomposed off site. Therefore, although agricultural fields may be predominantly sinks for atmospheric CO(2), this does not imply that they are necessarily increasing their carbon stock.
ISSN: 1550-7424

hal-01190754
https://hal.archives-ouvertes.fr/hal-01190754
DOI : 10.2111/rem-d-09-00072.1
PRODINRA : 214043

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
[1] Large changes in magnetic mineral concentration dependent parameters by more than 1 order of magnitude occur over 50–150 cm intervals in two marine sediment cores from the oxygen minimum zone in the Gulf of Aden. High-resolution sedimentological and chemical analyses indicate that these intervals are not associated with turbiditic events or sediment reworking, they do not result from changes in carbonate dilution or differences in sediment properties, and they do not correspond to volcanic layers. Magnetic mineralogical analyses reveal a change in magnetic mineral concentration from a magnetite-goethite assemblage to pure magnetite within the peak. The peaks almost disappear when the abundance of magnetic minerals is calculated after correcting for the magnetic moments of each magnetic mineral. Therefore, under the assumption that the variability of the magnetic parameters results from postdepositional mineralogical transformations, a relatively constant amount of magnetite was present at the surface of the sediment. Changes in redox conditions and nonsteady state diagenesis transformations have effectively been observed along both cores. Large values of total organic carbon coincide with poor preservation of biogenic and detrital magnetite, which reflects reductive dissolution of the finer magnetite grains. At the same levels, Fe 2þ release from reductively dissolved magnetite favored precipitation of goethite. The susceptibility peaks coincide with episodes of magnetite preservation caused by reduced surface
ISSN: 1525-2027

insu-01311064
https://hal-insu.archives-ouvertes.fr/insu-01311064
https://hal-insu.archives-ouvertes.fr/insu-01311064/document
https://hal-insu.archives-ouvertes.fr/insu-01311064/file/ggge2013-14-3779-bouilloux.pdf
DOI : 10.1002/ggge.20234

Éditeur(s) : Springer
Résumé : The light response curve methodology for microphytobenthic biofilms was studied by comparing the two most usual approaches used in pulse amplitude modulated (PAM) fluorometry. The non-sequential light curve (N-SLC) method is characterized by independent measures of the photosynthetic activity across a light gradient whereas the rapid light curve (RLC) method consists of successive measures on the same sample exposed to a stepwise increase of light intensities. Experiments were carried out on experimental microphytobenthic biofilms prepared from natural assemblages and acclimated to dark conditions. In preliminary experiments, N-SLCs were constructed from fluorescence induction curves performed at 12 different photon flux densities (PFDs). A minimum of 50 s of illumination was necessary to reach a stable light response curve; shorter illumination times resulted in underestimating the physiological parameters (alpha the light utilization coefficient in light-limited conditions and rETR(max) the maximum rate of photosynthesis efficiency) of the light response curve. For the comparison between N-SLCs and RLCs, the same time of illumination (50 s) was used for each light step of RLCs so that N-SLCs differed from RLCs only by the way the amount of light was delivered, i.e., a light dose accumulation for RLC. The experimental results showed the difference between the two photobiological response curves. In the lower range of PFDs, RLCs exhibited a larger value of alpha; in this light-limited part of the response curve the incremental increase of PFDs limited the development of NPQ and resulted in a better optimization of electron transport rate for RLC. In the higher range of PFDs, the trend was reversed and the RLC showed a lower value of rETR(max) than the N-SLC did; this is attributed to the light dose accumulation which likely led to a more efficient dispersion of energy, as illustrated by a higher non-photochemical quenching (NPQ). In conclusion, these results confirm that parameters derived from both methods differ in their value and do not bear the same physiological information.
Marine Biology (0025-3162) (Springer), 2007-11 , Vol. 153 , N. 1 , P. 91-101

Droits : 2007 Springer
http://archimer.ifremer.fr/doc/2007/publication-3331.pdf
DOI:10.1007/s00227-007-0787-9
http://archimer.ifremer.fr/doc/00000/3331/