Éditeur(s) : University of Tasmania, Université de Bretagne Occidentale
Résumé : Empirical evidence and the theoretical literature both point to stock sustainability and the protection of marine biodiversity as important fisheries management issues. Decision-support tools are increasingly required to operationalize the ecosystem-based approach to fisheries management. These tools need to integrate (i) ecological and socio-economic drivers of changes in fisheries and ecosystems; (ii) complex dynamics; (iii) deal with various sources of uncertainty; and (iv) incorporate multiple, rather than single objectives. The stochastic co-viability approach addresses the trade-offs associated with balancing ecological, economic and social objectives throughout time, and takes into account the complexity and uncertainty of the dynamic interactions which characterize exploited ecosystems and biodiversity. This thesis proposes an application of this co-viability approach to the sustainable management of mixed fisheries, using two contrasting case studies: the French Bay of Biscay (BoB) demersal mixed fishery and the Australian Northern Prawn Fishery (NPF). Both fisheries entail direct and indirect impacts on mixed species communities while also generating large economic returns. Their sustainability is therefore a major societal concern. A dynamic bio-economic modelling approach is used to capture the key biological and economic processes governing these fisheries, combining age- (BoB) or size- (NPF) structured models of multiple species with recruitment uncertainty, and multiple fleets (BoB) or fishing strategies (NPF). Economic uncertainties relating to input and output prices are also considered. The bioeconomic models are used to investigate how the fisheries can operate within a set of constraints relating to the preservation of Spawning Stock Biomasses (BoB) or Spawning Stock Size Indices (NPF) of a set of key target species, maintenance of the economic profitability of various fleets (BoB) or the fishery as a whole (NPF), and limitation of fishing impacts on the broader biodiversity (NPF), under a range of alternative scenarios and management strategies. Results suggest that under a status quo strategy both fisheries can be considered as biologically sustainable, while socio-economically (and ecologically in the NPF case) at risk. Despite very different management contexts and objectives, viable management strategies suggest a reduction in the number of vessels in both cases. The BoB simulations allow comparison of the trade-offs associated with different allocations of this decrease across fleets. Notably, co-viability management strategies entail a more equitable allocation of effort reductions compared to strategies aiming at maximizing economic yield. In the NPF, species catch diversification strategies are shown to perform well in controlling the levels of economic risk, by contrast with more specialized fishing strategies. Furthermore analyses emphasize the importance to the fishing industry of balancing global economic performance with inter-annual economic variability. Promising future developments based on this research involve the incorporation of a broader set of objectives including social dimensions, as well as the integration of ecological interactions, to better address the needs of ecosystem-based approaches to the sustainable harvesting of marine biodiversity.
L’objectif général de la thèse est de modéliser les principaux processus biologiques et économiques régissant des pêcheries multi-espèces et multi-flottilles afin de proposer des stratégies viables pour la gestion durable de ces pêcheries mixtes, dans un contexte stochastique et multiobjectif. Plus spécifiquement, cette thèse utilise des analyses de co-viabilité stochastique pour étudier les arbitrages entre des objectifs contradictoires de gestion (conservation, et viabilité économique et sociale) des pêcheries mixtes. Deux pêcheries mixtes sont analysées dans cette thèse: la pêcherie française mixte démersale du golfe de Gascogne et la pêcherie crevettière australienne du Nord (NPF). Ces deux pêcheries sont multi-espèces, et utilisent des stratégies multiples de pêche, induisant des impacts directs et indirects sur les écosystèmes. Cette thèse propose une application de la co-viabilité stochastique à ces deux cas, en prenant en compte leur histoire, leur contexte socio-politique et les différences dans les stratégies et objectifs de gestion. Les résultats suggèrent que le status quo peut être considéré comme une stratégie biologiquement durable mais socio économiquement à risque dans les deux pêcheries (ainsi qu’à risque écologique dans le cas de la pêcherie australienne). Les simulations réalisées pour le golfe de Gascogne permettent de comparer les arbitrages associés à différentes réductions de capacités par flottille et de montrer qu’il existe des solutions de gestion permettant la co-viabilité du système (viabilité biologique des différentes espèces considérées et viabilité socio-économique des flottilles) contrairement à des stratégies de gestion mono-spécifiques ou basées sur la maximisation de la rente. Dans la pêcherie crevettière australienne, l’analyse montre que les stratégies de diversification permettent de limiter le risque économique contrairement aux stratégies plus spécialisées.

Droits : UBO, Univ. Tasmania
http://archimer.ifremer.fr/doc/00206/31731/30134.pdf
http://archimer.ifremer.fr/doc/00206/31731/

Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : No efficient method is available to compare multi-locus estimates of diversity while taking into account inter-locus and inter-population stochastic variance. The advent of genome scan approaches makes the development of such tests absolutely necessary. We developed a method to compare genome-wide diversity estimates while taking into account-and factoring out-variation in census size and making use of inter-locus variance to assess significance of differences in diversity levels. An approach based on rarefaction with bootstrap re-sampling (RaBoT) was implemented into a test of multi-locus comparison of diversity coded in R. The properties of the test were studied by applying it to simulated populations with varying diversity levels and varying differences in diversity levels. The test was then applied to empirical data from disturbed and undisturbed populations of Virola michelii (Myristicaceae) genotyped at 693 amplified fragment length polymorphism (AFLP) markers. RaBoT was found to be rather conservative, with large numbers of false negatives when the diversity in the compared populations was similar, and false positives mostly associated to comparisons of populations with extremely high levels of diversity. When applied to empirical data, RaBoT detected higher genetic diversity in a post-disturbance than in an undisturbed population and lower genetic diversity in a seedling than in the corresponding adult population, but it also revealed differences in diversity between subgroups within the disturbed and undisturbed plots. RaBoT is a sensitive method to compare multi-locus levels of diversity that can be applied both at the genotype level for dominant markers (e.g. AFLP) and at the allele level for biallelic codominant markers (e.g. single-nucleotide polymorphisms).
ISSN: 1286-4560

hal-01032413
https://hal.archives-ouvertes.fr/hal-01032413
DOI : 10.1007/s13595-013-0302-z

Éditeur(s) : HAL CCSD
Résumé : This paper studies the implications of fi…sh search activities on the working of …fisheries. We develop a simple …shery matching modelin which …rms’ stochastic search for …sh requires speci…fic resources.The equilibrium level of anthropic pressure (number of empty ves-sels/conserved …sh stock) exerted by …rms on the …sh stock is derivedfrom their individual pro…t maximizing behavior. Anthropic pressuredetermines in turn the rate at which vessels fi…nd fi…sh i.e. catchability,which is therefore endogenous in our model, and the stock conserva-tion (uncaught …sh) rate, through the dynamic equation of the latter.We then show that under open access, equilibrium anthropic pressure,…fishing effort and the conservation rate heavily depend on search costs.An empirical study of the French Guiana shrimp …shery con…rms theability of the model to reproduce empirical data.
https://hal.univ-antilles.fr/hal-01228851

Droits : info:eu-repo/semantics/OpenAccess
hal-01228851
https://hal.univ-antilles.fr/hal-01228851
https://hal.univ-antilles.fr/hal-01228851/document
https://hal.univ-antilles.fr/hal-01228851/file/Nicolas%20Sanz%20%26Bassirou%20Diop.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The quasi-equilibrium approximation is acceptable when molecular interactions are fast enough compared to circuit dynamics, but is no longer allowed when cellular activities are governed by rare events. A typical example is the lactose operon (lac), one of the most famous paradigms of transcription regulation, for which several theories still coexist to describe its behaviors. The lac system is generally analyzed by using equilibrium constants, contradicting single-event hypotheses long suggested by Novick and Weiner (1957). Enzyme induction as an all-or-none phenomenon. Proc. Natl. Acad. Sci. USA 43, 553-566) and recently refined in the study of (Choi et al., 2008. A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Science 322, 442-446). In the present report, a lac repressor (LacI)-mediated DNA immunoprecipitation experiment reveals that the natural LacI-lac DNA complex built in vivo is extremely tight and long-lived compared to the time scale of lac expression dynamics, which could functionally disconnect the abortive expression bursts and forbid using the standard modes of lac bistability. As alternatives, purely kinetic mechanisms are examined for their capacity to restrict induction through: (i) widely scattered derepression related to the arrival time variance of a predominantly backward asymmetric random walk and (ii) an induction threshold arising in a single window of derepression without recourse to nonlinear multimeric binding and Hill functions. Considering the complete disengagement of the lac repressor from the lac promoter as the probabilistic consequence of a transient stepwise mechanism, is sufficient to explain the sigmoidal lac responses as functions of time and of inducer concentration. This sigmoidal shape can be misleadingly interpreted as a phenomenon of equilibrium cooperativity classically used to explain bistability, but which has been reported to be weak in this system.
ISSN: 0022-5193

inserm-00818506
http://www.hal.inserm.fr/inserm-00818506
http://www.hal.inserm.fr/inserm-00818506/document
http://www.hal.inserm.fr/inserm-00818506/file/LacI-TeX.pdf
ARXIV : 1312.5566

Éditeur(s) : HAL CCSD Institute of Electrical and Electronics Engineers
Résumé : International audience
Tailoring nearest neighbors algorithms to boosting is an important problem. Recent papers study an approach, UNN, which provably minimizes particular convex surrogates under weak assumptions. However, numerical issues make it necessary to experimentally tweak parts of the UNN algorithm, at the possible expense of the algorithm's convergence and performance. In this paper, we propose a lightweight alternative algorithm optimizing proper scoring rules from a very broad set, and establish formal convergence rates under the boosting framework that surprisingly compete with those known for UNN. It is an adaptive Newton-Raphson algorithm, which belongs to the same lineage as the popular Gentle Adaboost. To the best of our knowledge, no such boosting-compliant convergence rates were previously known for these algorithms. We provide experiments on a dozen domains, including the challenging Caltech and SUN computer vision databases. They display that GNNB significantly outperforms UNN, both in terms of convergence rate and quality of the solution obtained, and GNNB provides a simple and efficient contender to techniques that can be used on very large domains, like stochastic gradient descent -- for which little is known to date. Experiments include a divide-and-conquer improvement of GNNB which exploits the link with proper scoring rules optimization.
ISSN: 0162-8828

hal-00958809
https://hal.archives-ouvertes.fr/hal-00958809
https://hal.archives-ouvertes.fr/hal-00958809/document
https://hal.archives-ouvertes.fr/hal-00958809/file/PAMI.pdf
DOI : 10.1109/TPAMI.2014.2307877

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Properties of composite materials depend on interatomic phenomena occurring between binder crystals. Experimental information of Atomic Force Microscopy (A.F.M.) is of prime importance; however understanding is helped by molecular modeling. As underlined in Section 1, the present study is able to simulate crystal interfaces in presence of a solution within apertures less than 1 Nanometer at a full atomic scale. Section 2 presents the case study of a gypsum solution between (120) gypsum faces, with related boundary conditions and atomic interactions. Section 3 deals with the mass equilibrium of the solution within interfaces <5 angstrom, using the original Semi Analytical Stochastic Perturbations (SASP) approach. This information becomes in Section 4 the key for explaining the peak of adhesion obtained in A.F.M. around an aperture of 3 A and gives enlightenments on gypsum cohesion. In conclusion, this illustration shows the potentialities of full atomic modeling which could not be attained by any numerical approach at a mesoscopic scale.
ISSN: 0008-8846

hal-00411868
https://hal.archives-ouvertes.fr/hal-00411868
DOI : 10.1016/j.cemconres.2007.09.022

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : International audience
The Michaelis-Menten enzymatic reaction is sufficient to perceive many subtleties of network modeling, including the concentration and time scales separations, the formal equivalence between bulk phase and single-molecule approaches, or the relationships between single-cycle transient probabilities and steady state rates. Twelve methods proposed by different authors and yielding the same famous Michaelis-Menten equation, are selected here to illustrate the kinetic and probabilistic use of rate constants and to review basic techniques for handling them. Finally, the general rate of an ordered multistep reaction, of which the Michaelis-Menten reaction is a particular case, is deduced from a Markovian approach.
ISSN: 0259-9791

hal-00920806
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00920806
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00920806v2/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00920806/file/12MM.pdf
ARXIV : 1312.5468

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In this paper, we have presented a spectral and a multifractal analysis performed on 412 time series of wind speed data each of duration of 350 s and sampled at 20 Hz. The average spectrum for the wind speed displays a scaling behavior, in the inertial range, over two decades, with b ¼ 1:68 close to the Kolmogorov value À 5/3. A multifractal analysis has been motivated by the presence of scaling invariance in data set. Then we have considered their scaling properties in the framework of fully developed turbulence and multifractal cascades. The results obtained for wind speed confirm that the exponent scaling function z V ðqÞ is nonlinear and concave. This exponent characterizes the scaling functions in the inertial range indicating that the wind speed is intermittent and multifractal. Moreover the theoretical quadratic relation for lognormal multifractals is well fitted. We investigate the consequence for wind energy production: we generate stochastic simulations of a multifractal random walk, and using a power curve derived from experimental data, we generate the associated power time series. We show that, due to the saturation of the power curve for large speed values, when the input time series (turbulent wind speed) is multifractal, the output can be almost monofractal.
ISSN: 0167-6105

hal-01527886
https://hal.archives-ouvertes.fr/hal-01527886
DOI : 10.1016/j.jweia.2012.06.002

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
The common endosymbiotic Wolbachia bacteria influence arthropod hosts in multiple ways. They are mostly recognized for their manipulations of host reproduction, yet, more recent studies demonstrate that Wolbachia also impact host behavior, metabolic pathways and immunity. Besides their biological and evolutionary roles Wolbachia are new potential biological control agents for pest and vector management. Importantly, Wolbachia-based control strategies require controlled symbiont transfer between host species and predictable outcomes of novel Wolbachia-host associations. Theoretically, this artificial horizontal transfer could inflict genetic changes within transferred Wolbachia populations. This could be facilitated through de novo mutations in the novel recipient host or changes of haplotype frequencies of polymorphic Wolbachia populations when transferred from donor to recipient hosts. Here we show that Wolbachia resident in the European cherry fruit fly, Rhagoletis cerasi, exhibit ancestral and cryptic sequence polymorphism in three symbiont genes, which are exposed upon microinjection into the new hosts Drosophila simulans and Ceratitis capitata. Our analyses of Wolbachia in microinjected D. simulans over 150 generations after microinjection uncovered infections with multiple Wolbachia strains in trans-infected lines that had previously been typed as single infections. This confirms the persistence of low-titer Wolbachia strains in microinjection experiments that had previously escaped standard detection techniques. Our study demonstrates that infections by multiple Wolbachia strains can shift in prevalence after artificial host transfer driven by either stochastic or selective processes. Trans-infection of Wolbachia can claim fitness costs in new hosts and we speculate that these costs may have driven the shifts of Wolbachia strains that we saw in our model system.
ISSN: 1932-6203

hal-01544765
https://hal.archives-ouvertes.fr/hal-01544765
DOI : 10.1371/journal.pone.0082402

Éditeur(s) : HAL CCSD Wiley
Résumé :  
Positive aboveground biomass trends have been reported from old-growth forests across the Amazon basin and hypothesized to reflect a large-scale response to exterior forcing. The result could, however, be an artefact due to a sampling bias induced by the nature of forest growth dynamics. Here, we characterize statistically the disturbance process in Amazon old-growth forests as recorded in 135 forest plots of the RAINFOR network up to 2006, and other independent research programmes, and explore the consequences of sampling artefacts using a data-based stochastic simulator. Over the observed range of annual aboveground biomass losses, standard statistical tests show that the distribution of biomass losses through mortality follow an exponential or near-identical Weibull probability distribution and not a power law as assumed by others. The simulator was parameterized using both an exponential disturbance probability distribution as well as a mixed exponential-power law distribution to account for potential large-scale blowdown events. In both cases, sampling biases turn out to be too small to explain the gains detected by the extended RAINFOR plot network. This result lends further support to the notion that currently observed biomass gains for intact forests across the Amazon are actually occurring over large scales at the current time, presumably as a response to climate change.
ISSN: 1354-1013

hal-01032162
https://hal.archives-ouvertes.fr/hal-01032162
DOI : 10.1111/j.1365-2486.2009.01891.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We study diffusion in a heterogeneous medium that is characterized by spatially varying diffusion properties from a random walk point of view. We show that an inhomogeneous continuous time random walk (CTRW) with a spatially variable exponential transition time distribution solves the spatially discretized heterogeneous diffusion equation. This demonstrates the equivalence of the widely used time-domain random walk (TDRW) scheme and spatially inhomogeneous CTRW and at the same time provides a demonstration of the formal equivalence of the TDRW particle formulation and the heterogeneous diffusion equation. Based on this equivalence, we develop a TDRW method for heterogeneous diffusion under spatially variable multirate mass transfer properties. We discuss the implementation of these schemes and study the diffusion behavior in the presence of traps that are characterized by a truncated power-law trapping time distribution.
ISSN: 0309-1708

hal-00767566
https://hal.archives-ouvertes.fr/hal-00767566
DOI : 10.1016/j.advwatres.2012.07.015

Éditeur(s) : HAL CCSD
Résumé : Among erosion processes, river incision is classicaly described as a key process controlling erosion of landscapes. Incision efficiency is mainly influenced by climate and erodibility. This latter is not only dependent on the nature of the bedrock, but also on its past deformation, which affects its rheological effective properties, such as fracture density. The main objectives of this thesis are: (1) to better constrain the relationship between effective properties and erodibility, and (2) to quantify the influence of erodibility and erosion on both the temporal and spatial building or decay of the topography. Several numerical tools are developed. A 1D formalism of landscape evolution is introduced, including river incision with stochastic distribution of water discharge and hillslope landsliding. A new remeshing algorithm called Surface Lagrangian Remeshing (SLR) is developed as a complement to remeshing algorithms dealing with internal elements. It allows one to take into account long-term erosion into 2D Lagrangian numerical codes based on triangular finite elements. Then the potentiality of measuring erodibility in-situ using a Schmidt hammer (R) is assessed for the active orogen of Taiwan, the diagenetic Annot sandstones and St Clement fault zone. Results suggest a strong control of R by effective properties. A linear model based on effective medium theory is applied to a fault zone with an unmacthed resolution (750 measures, 25 measures per square meter). The model successfully correlates R to fracture density. These results demonstrate that effective elasticity as well as erodibility are sensitive to the density and type of fractures. Finally I focus on the erosional and rheological conditions that allows reproducing post-orogenic evolution of mountain belts. A model coupling surface erosion and regional isostatic uplift is consistent with observations. The topographic decay and decrease of the ratio of surface elevation over crustal root thickness is at first order controlled by the initial geometry of the mountain belt and erosion efficiency. This new model highlights the control ofclimate and erodibility on the topographic decay and of lithospheric rheology on the perseverance of crustal roots.
Parmi les processus d'érosion, l'incision des rivières est classiquement décrit comme un processus clé contrôlant l'érosion des paysages. L'efficacité de l'incision est principalement influencée par le climat et par l'érodabilité. Ce dernier paramètre ne dépend pas seulement de la nature du substratum rocheux, mais aussi de sa déformation passée qui affecte ses propriétés rhéologiques équivalentes. Les principaux objectifs de cette thèse sont: (1) de mieux contraindre les relations entre propriétés équivalentes et érodabilité, et (2) de quantifier l'influence de l'érosion et de l'érodabilité sur la formation ou la décadence, spatiale et temporelle, de la topographie. Plusieurs outils numériques sont développés. Un formalisme 1D d'évolution des paysages est proposé, prenant en compte simultanément l'incision des rivières avec une distribution stochastique des débits en eau et l'érosion des versants par glissements de terrain. Un nouvel algorithme de remaillage appelé Surface Lagrangian Remeshing (SLR) est développé. Il permet de prendre en compte l'érosion à long terme dans les codes numériques 2D Lagrangiens basés sur des éléments finis triangulaires. Ensuite, la possibilité de mesurer in-situ l'érodabilité avec un marteau de Schmidt (R) est évaluée pour: l'orogène actif de Taiwan, les grès diagénétiques d'Annot et la zone de faille de St Clément. Les résultats suggèrent un fort contrôle de R par les propriétés équivalentes des roches testées. Un modèle linéaire, basé sur la théorie des milieux équivalents, est appliqué à une zone de faille avec une résolution inégalée (750 mesures, 25 mesures par mètre carré). Le modèle permet de corréler avec succès la densité de fracture et R. Ces résultats démontrent empiriquement que l'élasticité équivalente ainsi que l'érodabilité sont sensibles à la densité et à la nature des fractures. Enfin j'étudie les conditions d'érosion et de rhéologie qui permettent de reproduire l'évolution des chaînes de montagnes post-orogéniques. Un modèle couplant érosion en surface et soulèvement isostatique régional est compatible avec les observations. Les taux de décroissance topographique et de diminution du rapport de l'élévation de surface sur l'épaisseur de racine crustale sont contrôlés au premier ordre par la géométrie initiale de la chaîne de montagne et par l'efficacité de l'érosion. Ce nouveau modèle met en évidence le contrôle du climat et de l'érodabilité sur la décroissance topographique et de la rhéologie lithosphérique sur la persévérance des racines crustales.
https://tel.archives-ouvertes.fr/tel-00602341

tel-00602341
https://tel.archives-ouvertes.fr/tel-00602341
https://tel.archives-ouvertes.fr/tel-00602341/document
https://tel.archives-ouvertes.fr/tel-00602341/file/thesephilippesteer.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Recently, a large amount of work has been devoted to the study of spectral clustering — a powerful unsupervised classification method. This paper brings contributions to both its foundations, and its applications to text classification. Departing from the mainstream, concerned with hard membership, we study the extension of spectral clustering to soft membership (probabilistic, EM style) assignments. One of its key features is to avoid the complexity gap of hard membership. We apply this theory to a challenging problem, text clustering for languages having permeable borders, via a novel construction of Markov chains from corpora. Experiments with a readily available code clearly display the potential of the method, which brings a visually appealing soft distinction of languages that may define altogether a whole corpus.
ISSN: 0031-3203

hal-00329991
https://hal.archives-ouvertes.fr/hal-00329991
DOI : 10.1016/j.patcog.2008.06.024

Éditeur(s) : HAL CCSD
Résumé : International audience
Calculation of seismic risks in a zone are based on stochastic models describing at best the seismic activity. Our focus is the spatio-temporal evolution of the probability of earthquake occurrences. The main modelling tool is the theory of the point processes. We discuss about the spatio-temporal extension of ETAS (Epidemic Type Aftershock Sequence) with marks and study the properties of the log-likelihood and the maximum likelihood estimators. Seismic data from the Lesser Antilles Arc carried out between 1999 and 2004 are analyzed.
39th Annual Meeting of the Statistical Society of Canada
Wolfville, Canada

hal-00601513
https://hal.archives-ouvertes.fr/hal-00601513

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Mapping forest aboveground biomass (AGB) has become an important task, particularly for the reporting of carbon stocks and changes. AGB can be mapped using synthetic aperture radar data (SAR) or passive optical data. However, these data are insensitive to high AGB levels (>150 Mg/ha, and >300 Mg/ha for P-band), which are commonly found in tropical forests. Studies have mapped the rough variations in AGB by combining optical and environmental data at regional and global scales. Nevertheless, these maps cannot represent local variations in AGB in tropical forests. In this paper, we hypothesize that the problem of misrepresenting local variations in AGB and AGB estimation with good precision occurs because of both methodological limits (signal saturation or dilution bias) and a lack of adequate calibration data in this range of AGB values. We test this hypothesis by developing a calibrated regression model to predict variations in high AGB values (mean >300 Mg/ha) in French Guiana by a methodological approach for spatial extrapolation with data from the optical geoscience laser altimeter system (GLAS), forest inventories, radar, optics, and environmental variables for spatial inter-and extrapolation. Given their higher point count, GLAS data allow a wider coverage of AGB values. We find that the metrics from GLAS footprints are correlated with field AGB estimations (R 2 =0.54, RMSE=48.3 Mg/ha) with no bias for high values. First, predictive models, including remote-sensing, environmental variables and spatial correlation functions, allow us to obtain "wall-to-wall" AGB maps over French Guiana with an RMSE for the in situ AGB estimates of ~51 Mg/ha and R²=0.48 at a 1-km grid size. We conclude that a calibrated regression model based on GLAS with dependent environmental data can produce good AGB predictions even for high AGB values if the calibration data fit the AGB range. We also demonstrate that small temporal and spatial mismatches between field data and GLAS footprints are not a problem for regional and global calibrated regression models because field data aim to predict large and deep tendencies in AGB variations from environmental gradients and do not aim to represent high but stochastic and temporally limited variations from forest dynamics. Thus, we advocate including a greater variety of data, even if less precise and shifted, to better represent high AGB values in global models and to improve the fitting of these models for high values.
ISSN: 0303-2434

Droits : http://creativecommons.org/licenses/by/
hal-01381116
https://hal.archives-ouvertes.fr/hal-01381116
https://hal.archives-ouvertes.fr/hal-01381116/document
https://hal.archives-ouvertes.fr/hal-01381116/file/Fayad2016a.pdf
DOI : 10.1016/j.jag.2016.07.015

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In order to reveal the structural properties at small scale within a geological unit apparently homogeneous at large scale, we explore the stochastic components of petrophysical measurements recorded in a borehole drilled through the Cretaceous siliclastic units of the South-eastern Basin of France. First, we analyse the instantaneous fluctuations of gamma ray log measurements searching for scaling laws in its power spectrum. Power spectra indicate a scaling behaviour with average exponent beta a values mostly falling in the range 1
ISSN: 0920-4105

hal-00496425
https://hal.archives-ouvertes.fr/hal-00496425
DOI : 10.1016/j.petrol.2009.11.001

Éditeur(s) : HAL CCSD
Résumé : International audience
In the analysis of coastal hazards, the features of extreme waves are determining information to question the impact of storms to the coast. The spatial behaviour of extreme waves is even more valuable especially since it is sparsely provided. Regarding recent applications in other contexts, a kind of statistical models called max-stable processes is relevant for modelling spatial extreme events. Max-stable processes are extensions of the well-known Generalised Extreme Value (GEV) distribution. Unlike univariate approaches, max-stable processes consider spatial dependence of a phenomenon. Such a modelling also overtakes a standard multivariate approach by providing information continuously over the area studied, even where no observation is available. Relying on such a stochastic modelling, the aim of this study is to discuss the extreme waves hazards in the Gulf of Lions, focusing on their spatial behaviour.
34th Conference on Coastal Engineering
Seoul, South Korea

lirmm-01382568
https://hal-lirmm.ccsd.cnrs.fr/lirmm-01382568
https://hal-lirmm.ccsd.cnrs.fr/lirmm-01382568/document
https://hal-lirmm.ccsd.cnrs.fr/lirmm-01382568/file/7553-31212-1-PB.pdf
DOI : 10.9753/icce.v34.management.17

Éditeur(s) : HAL CCSD Royal Society, The
Résumé : International audience
A 30-year study of temporal changes in gastropod community structure on the reefs of a Pacific Ocean atoll (Fangataufa, Tuamotu Archipelago) subjected to atmospheric nuclear tests during the 1960s offered the opportunity for an otherwise impossible field experiment that could help ecologists understand mollusc primary succession. Reef molluscs were partly or entirely wiped out by the heat of the nuclear tests and the reefs were recolonized by ocean larvae. On all reefs, community composition before the tests was very different from what it evolved to afterwards. A new method of analysis was developed to study the temporal variation in community composition before versus after the tests (temporal beta diversity). Analyses showed that community compositions diverged through time among the reefs. Only some species can survive the harsh conditions of supralittoral zones, so the same species recolonized them; environmental filtering controlled the development of the new communities. In the reef flat and edge zones, differences in community composition seem to be the result of neutral stochastic colonization by larvae coming from the open ocean. All reefs developed a community composition quite different from that before the nuclear tests.
ISSN: 0962-8452

hal-01174175
https://hal-univ-perp.archives-ouvertes.fr/hal-01174175
DOI : 10.1098/rspb.2015.0750

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : International audience
The Michaelis-Menten enzymatic reaction is sufficient to perceive many subtleties of network modeling, including the concentration and time scales separations, the formal equivalence between bulk phase and single-molecule approaches, or the relationships between single-cycle transient probabilities and steady state rates. Seven methods proposed by different authors and yielding the same famous Michaelis-Menten equation, are selected here to illustrate the kinetic and probabilistic use of rate constants and to review basic techniques for handling them. Finally, the general rate of an ordered multistep reaction, of which the Michaelis-Menten reaction is a particular case, is deduced from a Markovian approach.
Journal of Mathematical Chemistry

hal-00920806
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00920806
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00920806/document
ARXIV : 1312.5468
DOI : 10.1007/s10910-013-0237-5

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The interpretation of coseismic surface deformation measurements through inversion techniques is of major importance to understand the mechanical behaviour of a seismic fault. Dense geodetic data sets in the vicinity of the ruptured fault provide unique constraints on detailed fault geometry and slip distribution at depth, making them complementary to seismological data. Bam earthquake (Mw 6.6, 2003 December 26) induced surface deformation has been precisely mapped by Envisat ASAR interferometry and by subpixel correlation techniques applied to Spot-5 and ASAR amplitude images. These oblique and horizontal estimations of deformation have been completed with one levelling profile along the main road crossing the rupture from west to east. We process these data (separately and jointly) in a two-step inversion technique, within the elastic half-space theory framework. Our objective is to determine the dislocation model at depth that satisfies simultaneously all the geodetic constraints. Also, we estimate the relative contribution of each geodetic data set to this inversion process.We first use a stochastic direct approach called neighbourhood algorithm in order to estimate the average characteristics of the rupture, and their relative uncertainty. Constraining in this way the geometry of the ruptured fault, we then linearize the inverse problem and compute the slip distribution on the fault using a standard weighted least-square technique, assuming the solution is smooth to some degree. At each step, we discuss the optimal models, their stability as well as the relative influence of each data set on the derived models parameters. Our preferred model reveals a shallow dislocation on a quasi-vertical fault, slightly dipping towards east. The slip vector has a strike-slip component as high as 2 m, while the dip-slip component seems negligible.However, the estimation of the resolution matrices emphasizes the fact that the details of deep fault slip distribution remain out of the scope of this ill-conditioned inverse problem. Yet, our preferred model suggests a main dislocation limited at depth between 1 and 6 km. By contrast, the aftershocks observed in the months following the earthquake are located just beneath the estimated main shock.
ISSN: 0956-540X

hal-00314173
https://hal.archives-ouvertes.fr/hal-00314173
https://hal.archives-ouvertes.fr/hal-00314173/document
https://hal.archives-ouvertes.fr/hal-00314173/file/GJI-2007-169-849-briole.pdf
DOI : 10.1111/j.1365-246X.2007.03358.x