Éditeur(s) : Université de La Rochelle
Résumé : Shrimp aquaculture in New Caledonia is a developing industry, exclusively based on the species Litopenaeus stylirostris. However, it is subject to mortalities during grow out as observed all over the world. Since 1993, shrimp reared during the cold period are affected by a disease named "syndrome 93". As a consequence, the whole industry has become seasonal and produces essentially during the warm season. The climatic conditions during the periods of transition between the two main seasons could be responsible for an environmental stress and the origin reason for mortality outbreaks. Stocking density is the main risk factor. It increases the probability of the appearance and development of the epizooty in the pond. The "Summer Syndrome", a septicemic vibriosis caused by Vibrio nigripulchritudo, was identified for the first time in December 1997 in an intensive shrimp farm (DF). It has become enzootic ever since and is expressed after 50d of rearing. Since 2003, two others farms located near DF have developed the disease. As a consequence, the summer syndrome is considered to be a potential threat for all the industry. Between 1991 and 2005, the increase of feed input and nitrogen levels in feed has led to a significant increase in the growth rate over the years in the farms affected by the disease. In consequence, an early eutrophication of the water is observed, which is concomitant with the beginning of the mortality outbreaks. An early eutrophication and the virulence level of the pathogen are considered as the main risk factors of the disease. Factors may act synergistically to explain the summer syndrome. As part of a multidisciplinary approach (pathology – physiology – environment), two high-frequency surveys were carried out to analyse the pond ecosystem. Since the feed quantity increases with the biomass of shrimp, the eutrophication level of the pond ecosystem will also tend to increase with the duration of rearing. During the first part of the rearing, the abundance of each picoplankton type is exceptionally high and picophytoplankton dominated the autotrophic compartment. The nanophytoplankton dominated the second part of the rearing and was more unstable. The shift from pico to nanophytoplankton could be considered as an environmental stress and was observed in relation to the beginning of the mortalities, whatever the disease. Shift intensity could play a role by inducing directly or indirectly a stress for shrimp and/or a growth and/or virulence factors of the pathogen. Results from sediment studies show that mortality was best characterized by TAN concentration in pore water and even more when the TAN concentration was high. TAN and pH are potential stress factors for shrimp reared in ponds affected by these diseases.
L'aquaculture mondiale de crevettes est un secteur à très forte croissance. Toutefois, les problèmes liés aux maladies dans les élevages ne cessent d'augmenter depuis 1980. Au cours du développement de la filière de Nouvelle-Calédonie, deux épisodes saisonniers de mortalités associées à la présence de Vibrio pathogènes sont apparus et ont fortement perturbé les techniques et les schémas de production. Les premières mortalités hivernales, décrites sous le nom de « syndrome 93 » ont été observées en mai 1993. Elles ont affecté depuis tous les élevages de saison froide de toutes les fermes de production. Les conditions climatiques pendant les périodes de transitions entre les deux principales saisons caractérisant le climat de la Nouvelle-Calédonie, seraient responsables d'un stress environnemental à l'origine du déclenchement du syndrome 93. La densité initiale d'ensemencement, apparaît comme le principal facteur de risque, augmentant la probabilité d'apparition de la maladie et l'ampleur de ses effets. Le « syndrome d'été » a été identifié pour la première fois en 1997 dans une ferme pratiquant une production intensive. Il s'est déclaré depuis 2003 dans deux autres fermes géographiquement proches. Les mortalités apparaissent 58 jours en moyenne après l'ensemencement des post-larves dans les bassins. La recherche d'une croissance maximale des animaux a induit, avec les années, une intensification progressive du système caractérisée par une augmentation de la quantité d'aliment distribuée. L'examen des données historiques fait apparaître une eutrophisation du milieu de plus en plus précoce concomitante au déclenchement des mortalités. En l'état actuel de nos connaissances, cette évolution précoce de l'écosystème en présence de façon récurrente de la souche hautement pathogène du Vibrio incriminé et à une période où la fréquence des mues des crevettes est élevée, constitue le principal facteur de risque de la maladie. Avec l'apport croissant en aliment, la colonne d'eau évolue vers une autotrophie croissante alors que le sédiment devient de plus en plus hétérotrophe au fur et à mesure que l'élevage progresse. Au cours du processus d'eutrophisation, le compartiment autotrophe montre une succession de deux assemblages. Le picophytoplancton domine sur la première partie de l'élevage et laisse place à du nanophytoplancton en seconde partie. Cette phase de transition, concomitante à l'apparition des mortalités quel que soit le syndrome, caractérise un stress environnemental dont l'intensité pourrait favoriser ou non le déclenchement des mortalités. Les suivis de différents indicateurs dans les sédiments - pH, potentiel d'oxydoréduction et concentration en ammoniaque dans l'eau interstitielle – indiquent dans les bassins déclarant les épizooties des conditions qui ont été définies expérimentalement comme potentiellement plus stressantes pour les animaux.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2007/these-2643.pdf
http://archimer.ifremer.fr/doc/00000/2643/

Éditeur(s) : OMICS Publishing Group
Résumé : Coastal tropical shrimp farming may impact the adjacent ecosystems through the release of large quantities of effluents rich in nutrients. In New Caledonia, mangroves are considered as a natural biofilter to reduce impacts on the surrounding World Heritage listed lagoon. Our main objective was to understand the influence of effluent discharge on the biogeochemistry of mangrove sediments. A monitoring of the physico-chemical parameters of mangrove sediments was carried out during a whole year, including active and non active periods of the farm. The parameters studied were: i) benthic primary production (Chl-a concentrations), ii) physico-chemical parameters of sediments (redox potential, pH, salinity, TOC, TN, TS, δ13C and δ15N), iii) concentrations of dissolved nitrogen, iron and phosphorus. A mangrove developing in the same physiographic conditions, presenting the same zonation, and free of anthropogenic input was used as reference. The concentration of benthic Chl-a measured at sediment surface in the effluent receiving mangrove was twice to three times that measured in the control zone whatever the season. We thus suggest that nutrients inputs significantly increased the phytobenthic production in the effluent receiving mangrove during the whole year, even after the cessation of discharges and because of natural seasonal dynamic of phytobenthos. Although the flow of surface OM was increased, the OM content at depth was not higher than in the control mangrove. However, the contribution of mangrove detritus to the sedimentary organic pool was higher probably as a result of higher density and much greater individual size of the mangrove trees. Unlike the control mangrove sediment, the effluent receiving mangrove sediment was not stratified, redox potential values were high and presence of Fe3+ was detected down to 50 cm depth, probably as a result of a larger root system, allowing a better sediment oxygenation and accentuated OM decomposition processes, and thus limiting ecosystem saturation.
Journal of Aquaculture Research & Development (21559546) (OMICS Publishing Group), 2014-07-03 , Vol. 5 , N. 5 , P. 1-13

Droits : 2014 Marchand C, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
http://archimer.ifremer.fr/doc/00251/36253/34801.pdf
DOI:10.4172/2155-9546.1000262
http://archimer.ifremer.fr/doc/00251/36253/

Éditeur(s) : HAL CCSD Oldendorf/Luhe
Résumé : International audience
Unmanned aerial vehicles (UAVs) are being increasingly used in studies of marinefauna. Here, we tested the use of a UAV (DJI Phantom II®) to assess fine-scale variation in densitiesof 2 elasmobranchs (blacktip reef sharks Carcharhinus melanopterus and pink whiprays Himanturafai) on reef systems off Moorea (French Polynesia). We flew parallel transects designed to samplereef habitats (fringing, channel and sandflat habitats) across 2 survey blocks. Block 1 included ashark and ray provisioning site with potentially higher elasmobranch densities, whereas Block 2most likely had lower densities with no provisioning activities. Across 10 survey days in July 2014,we flew 3 transects (400 m) within each survey block (n = 60 total transect passes). As expected,densities (animals ha−1) were significantly higher in Block 1 than in Block 2, particularly where provisioningactivities occur. Differences between habitats surveyed were also found. Our study providesthe first direct estimates of shark and ray densities in coral-reef ecosystems and demonstratesthat UAVs can produce important fishery-independent data for elasmobranchs, particularly inshallow-water habitats.
ISSN: 0171-8630

hal-01416757
https://hal-univ-perp.archives-ouvertes.fr/hal-01416757
DOI : 10.3354/meps11945

Éditeur(s) : HAL CCSD
Résumé : International audience
This paper shows the information criteria (IC) performances in feature selection framework. Feature selection aims to select a representative subset among a wide set of features. We apply this approach to classify an hand segmented image. The performance is tested using various feature selection schemes (SFS, SBS, SFFS and SBFS) to select the candidate subsets. The accuracy of the approach is based on a good quality of the joint probability density approximation of the combined features. They are obtained using histogram optimized thanks to the adaptive arithmetic coding principles. Our approach is tested on different reference data. The subsets quality is evaluated using correct classification rate computed on multiple classifiers. Results show stability and convergence properties of this tool and its ability to select representative subsets (in the sense that the subset of feature is a good characterization of the classes in which the data belong). Information Criteria could be used for feature selection as a good alternative to other criteria.
CISP Proceedings
Shangay, China

hal-00634749
https://hal.archives-ouvertes.fr/hal-00634749

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
In a study of a 15-year-old pasture in Martinique (French West Indies), abundance and organization of microarthropod communities were correlated with the spatial distribution of the earthworm Polypheretima elongata (Megascolecidae). In patches of high earthworm density (133 individuals m-2), microarthropod density was significantly higher (80 000 individuals m-2) than in patches with few earthworms (31 worms m-2 and 49 000 microarthropods m-2). The diversity of microarthropod communities followed a similar pattern, the Shannon index for Collembola communities being, respectively, 3.12 and 1.82 in and outside earthworm patches. These results suggest that mesofauna abundance and diversity might be at least partly determined by the activity of larger invertebrates, as a result of the dramatic effects that the latter group exerts upon soil structure, pore distribution and food resources.
ISSN: 0178-2762

hal-00505427
https://hal.archives-ouvertes.fr/hal-00505427
https://hal.archives-ouvertes.fr/hal-00505427/document
https://hal.archives-ouvertes.fr/hal-00505427/file/Loranger_et_al._1998b.pdf
DOI : 10.1007/s003740050394

Éditeur(s) : Taylor & Francis Ltd
Résumé : A new benthic phototrophic dinoflagellate is described from sediments of a tropical marine cove at Martinique Island and its micromorphology is studied by means of light and electron microscopy. The cell contains small golden-brown chloroplasts and the oval nucleus is posterior. It is laterally compressed, almost circular in shape when viewed laterally. It consists of a small epitheca tilted toward the right lateral side and a larger hypotheca. In the left view, the cingulum is more anterior and the epitheca is reduced. The cingulum is displaced and left-handed. This organism is peculiar in having no apical pore and its thecal plate arrangement is 2 ' 1a 7 '' 5c 3s 5 ''' 1 ''''. The plates are smooth with small groups of pores scattered on their surface. An area with 60-80 densely arranged pores is found near the centre of the 2 ''' plate, on the left lateral side. Morphologically, these features are different from all other laterally compressed benthic genera. In addition, molecular genetic sequences of SSU and partial LSU form a distinct and well-supported clade among dinoflagellates and support the erection of a new genus. However, molecular phylogenies inferred from ribosomal genes failed to confirm any clear relationship with other benthic taxa and affinity with other laterally compressed dinoflagellates has not been demonstrated. Hence, the taxonomic affinity of Madanidinium loirii with a defined order and family is unclear at the moment.
European Journal Of Phycology (0967-0262) (Taylor & Francis Ltd), 2014-04 , Vol. 49 , N. 2 , P. 165-178

Droits : 2014 British Phycological Society
http://archimer.ifremer.fr/doc/00195/30622/29458.pdf
DOI:10.1080/09670262.2014.898797
http://archimer.ifremer.fr/doc/00195/30622/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Low Density Polyethylene (LDPE) films were treated by direct fluorination at different conditions, i.e. static and dynamic ones. Modification of the treated films chemical composition was studied by spectroscopic methods (solid state NMR, XPS and infrared spectroscopy). Surface morphology was investigated by SEM and AFM. Also surface energy measurements and electron paramagnetic resonance (EPR) were carried out. Direct fluorination resulted in printability, barrier properties towards O2 and tribological properties enhancement. On the contrary, the barrier properties towards water, initially good, were not improved but maintained.
ISSN: 0257-8972

hal-01324133
https://hal.archives-ouvertes.fr/hal-01324133
DOI : 10.1016/j.surfcoat.2016.03.021

Éditeur(s) : HAL CCSD
Résumé : International audience
We show that the properties of dense subdifferentiability and of trustworthiness are equivalent for any subdifferential satisfying a small set of natural axioms. The proof relies on a remarkable property of the subdifferential of the inf-convolution of two (non necessarily convex) functions. We also show the equivalence of the dense subdifferentiability property with other basic properties of subdifferentials such as a weak∗ Lipschitz Separation property, a strong Compact Separation property and a Minimal property for the analytic approximate subdifferential of Ioffe.
Serdica. Mathematical Journal

hal-00694603
https://hal.archives-ouvertes.fr/hal-00694603

Éditeur(s) : Elsevier Science Bv
Résumé : Estuaries and coastal waters are essential nursery habitats for many marine species, and especially for flatfishes. Thus, investigating how anthropogenic disturbances affect the quality of these habitats is of major importance to understand their consequences on the population renewal of marine species. The aim of the present study was to analyse the effects of estuarine habitat degradation on the population of the common sole in the Eastern Channel, a key species in the fish community and fisheries in this area. We especially focused on the drastic drop in the surface area and on the low water quality of the Seine estuary, the main river of the Eastern Channel. A geographic Information System (GIS) was used to develop quantitative maps of sole nursery habitats in the Eastern Channel by using a habitat suitability model based on bathymetry and sediment structure. This approach indicated that juvenile densities are low in the Seine estuary with regards to other nursery sectors. Then, thanks to historical maps of the Seine estuary, habitat suitability maps were built for key dates in the modifications of this estuary since 1850. This backward predictive approach suggests that habitat loss in the Seine estuary has led to a 42% decrease of its nursery capacity. As the density of juvenile sole in the Seine estuary is low in comparison to other sectors, this represents only a 3% loss at the sole population scale, in the Eastern Channel. However, when we assumed that prior to anthropogenic disturbance the juvenile density in the Seine estuary might have been equivalent to the current density of adjacent sectors with higher quality, the loss in abundance could be nearly 23% (8-36%). Results suggest that the loss in habitat surface combined with habitat degradation has led to an important loss in the contribution of the Seine estuary nursery to the whole sole population in the Eastern Channel. (C) 2009 Elsevier BM. All rights reserved.
Journal Of Sea Research (1385-1101) (Elsevier Science Bv), 2010-07 , Vol. 64 , N. 1-2 , P. 34-44

Droits : 2009 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00008/11921/9799.pdf
DOI:10.1016/j.seares.2009.08.003
http://archimer.ifremer.fr/doc/00008/11921/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Grey (Halichoerus grypus) and harbour seals (Phoca vitulina) are sympatric seal species, but they display distinct strategies of habitat use and connectivity between haulout sites. The distribution patterns and variations in relative abundance of both species were investigated along the French coast of the English Channel, at the southern limit of their range where seal numbers are increasing. Regular censuses conducted at all main haulout sites in mainland France showed significant seasonal variations at most sites, with more harbour seals counted during summer (breeding and moulting seasons), and more grey seals during summer only in the eastern English Channel. Trends in maximum haulout numbers at haulout sites showed a significant increase over the last five years, ranging from 9.7 to 30.9% per year for harbour seals, and from 5.8% (in the western English Channel) to 49.2% (in the eastern English Channel) per year for grey seals. These rates of increase in grey seal numbers are not linked to local pup production and most probably result from seal movements from the southwest British Isles and the North Sea, respectively. Aerial surveys conducted across the English Channel showed that most seal observations at sea were concentrated in the north-eastern English Channel. Telemetry showed that the 28 harbour seals tracked remained highly coastal, within a radius of 100 km from their haulout sites, and did not move to other known colonies. Grey seals moved much greater distances, reaching up to 1200 km from their capture site. More than half of the 45 grey seals tracked crossed the English Channel, especially during the breeding season, moving to known colonies in the southwest British Isles and the North Sea. Combining individual tracks and long-term surveys of the seal populations allowed a better understanding of the dynamics of these populations and their connectivity at a larger regional scale. The findings provide direct information for the management of grey and harbour seals within the frame of the Marine Strategy Framework Directive, and highlight focus areas where potential interactions between the two species should be monitored.
ISSN: 0967-0645

hal-01509674
https://hal.archives-ouvertes.fr/hal-01509674
DOI : 10.1016/j.dsr2.2017.04.004

Éditeur(s) : HAL CCSD American Meteorological Society
Résumé : Global positioning system (GPS) data from a dense network have been used for the analysis of the diurnal cycle of water vapor over Marseille, France, during the second intensive observation period (IOP2; 21–26 June 2001) of the Expérience sur Sites pour Contraindre les Modèles de Pollution Atmosphérique et de Transport d'Emission (ESCOMPTE) field experiment. Both tomographic analyses and integrated water vapor (IWV) contents from GPS have been used, in addition to wind profiler data and surface observations. Tomographic analysis of data from the dense GPS network and radiosondes provided the continuous temporal evolution of the vertical distribution of water vapor over the city of Marseille. The city is located on the shore of the Mediterranean Sea in southeastern France and is often under the influence of sea-breeze effects. Two different layers of breeze circulation are identified: a shallow sea breeze, blowing perpendicular to the local coastline, and a deep sea breeze, induced by the regional temperature gradient between sea and land. The origin of water vapor is shown to be mainly due to the advection of marine moist air by these sea-breeze circulations. However, the diurnal cycle of water vapor over Marseille is strongly influenced by the synoptic situation, which changes during the IOP2 (between a northerly mistral in the early stage of the IOP and an easterly wind at the end). It is shown that vertical profiles from tomographic analyses (combined with wind profiler data) allow for a proper interpretation of the diurnal cycle observed in IWV. Two-dimensional maps of IWV are also shown to complement the description of the horizontal advection of moisture by the different circulation regimes.
ISSN: 1558-8424

hal-00273624
https://hal.archives-ouvertes.fr/hal-00273624
https://hal.archives-ouvertes.fr/hal-00273624/document
https://hal.archives-ouvertes.fr/hal-00273624/file/drJAM_cycle_diurne_GPS_rev1.pdf
DOI : 10.1175/JAM2450.1

Éditeur(s) : HAL CCSD
Résumé : International audience
The functioning of the Manche-à-Eau lagoon and of its mangrove environment with the population of marine fish of Guadeloupe has been studied since 1983, and particularly in the 2000s. This ecosystem supports a stable fish assemblage structure because of its twice a day turnover (14.8%) of marine water. It is a favorable and important site for the reproduction (38%) and growth (46%) of a large number of species. The life cycle of these fish species share, for the most part, an ecophase in the mangrove in brackish water and a marine ecophase outside the lagoon. The mangrove plays a vital role in the retention of continental nutrients. This facilitates the trophic exploitation of vegetal and animal detritus bases by the fish in high population density. The majority of populations present individuals reaching length at least 40% from the known maximum length for the species, although only 38.1% have individuals longer than 300 mm. The mangrove aids in the spawning activity of fish species (41% to 58% of the total abundance) and in the reproductive (maturation, migration) process (58% in density and 70% in biomass). The sedentary species lay their eggs in the mangrove, whereas the temporary species stay there during their trophic ecophase or after a genesic migration from the sea to assure sexual maturation for both sexes in the species.
Proceedings of the 61st Gulf and Caribbean Fisheries Institute
Gosier, Guadeloupe

hal-00755780
https://hal.univ-antilles.fr/hal-00755780
https://hal.univ-antilles.fr/hal-00755780/document
https://hal.univ-antilles.fr/hal-00755780/file/GCFI_61_2009_307-312.pdf

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
Measurements of branch xylem density, D_x, were made for 1466 trees representing 503 species, sampled from 80 sites across the Amazon basin. Measured values ranged from 240 kg m^?3 for a Brosimum parinarioides from Tapajos in West Pará, Brazil to 1130 kg m^?3 for an Aiouea sp. from Caxiuana, Central Pará, Brazil. Analysis of variance showed significant differences in average D_x across the sample plots as well as significant differences between families, genera and species. A partitioning of the total variance in the dataset showed that geographic location and plot accounted for 33% of the variation with species identity accounting for an additional 27%; the remaining "residual" 40% of the variance accounted for by tree to tree (within species) variation. Variations in plot means, were, however, hardly accountable at all by differences in species composition. Rather, it would seem that variations of xylem density at plot level must be explained by the effects of soils and/or climate. This conclusion is supported by the observation that the xylem density of the more widely distributed species varied systematically from plot to plot. Thus, as well as having a genetic component branch xylem density is a plastic trait that, for any given species, varies according to where the tree is growing and in a predictable manner. Exceptions to this general rule may be some pioneers belonging to Pourouma and Miconia and some species within the genera Brosimum, Rinorea and Trichillia which seem to be more constrained in terms of this plasticity than most species sampled as part of this study.
ISSN: 1810-6277

hal-00298004
https://hal.archives-ouvertes.fr/hal-00298004
https://hal.archives-ouvertes.fr/hal-00298004/document
https://hal.archives-ouvertes.fr/hal-00298004/file/bgd-5-2003-2008.pdf

Éditeur(s) : Centre Océanologique de Bretagne
Résumé : One of the criteria for selecting a shrimp of commercial interest in French Polynesia is the acceptability of artificial diet; such a criterion has been used to test Penaeus merguiensis.Experiments have been carried out in Centre Océanologique du Pacifique in Tahiti island where the water temperature range is 25-29°C, salinity 35 ppt, pH. 8.2, and photoperiod constant.Juveniles used in this study are hatched in CNEXO-COP at Vairao.It has been found that a 50-55% protein content diet gives a better growth performance. A carbohydrate such as starch appears more suitable than glucose or glucose plus starch in isonitrogenous purified diets.A vitamin mix rich in vitamin C, choline and inositol provides better results and a mineral mix with 3% magnesium reaches optimum. The major nutritional results for this species are applied to formulation of artificial diets.With the best diet, growth performances are normal: from 2.8 g to 9.0 g in 90 days, with about 60% survival rate at alow density, 20 animals/m² under strict control. But at another scale, in 400 m² graw-out tanks, growth was rather low even with an excellent Japanese diet containing 60% protein.Therefore, P. merguiensis does not appear to be a good candidate species for aquafarming in French Polynesia. [NOT CONTROLLED OCR]
Recueil des Travaux du Centre Océanologique de Bretagne (Centre Océanologique de Bretagne), 1979 , P. 705-714

Droits : Centre Océanologique de Bretagne
http://archimer.ifremer.fr/doc/1979/publication-5272.pdf
http://archimer.ifremer.fr/doc/00000/5272/

Éditeur(s) : HAL CCSD Wiley
Résumé : The extent of gene dispersal is a fundamental factor of the population and evolutionary dynamics of tropical tree species, but directly monitoring seed and pollen movement is a difficult task. However, indirect estimates of historical gene dispersal can be obtained from the fine-scale spatial genetic structure of populations at drift-dispersal equilibrium. Using an approach that is based on the slope of the regression of pairwise kinship coefficients on spatial distance and estimates of the effective population density, we compare indirect gene dispersal estimates of sympatric populations of 10 tropical tree species. We re-analysed 26 data sets consisting of mapped allozyme, SSR (simple sequence repeat), RAPD (random amplified polymorphic DNA) or AFLP (amplified fragment length polymorphism) genotypes from two rainforest sites in French Guiana. Gene dispersal estimates were obtained for at least one marker in each species, although the estimation procedure failed under insufficient marker polymorphism, limited sample size, or inappropriate sampling area. Estimates generally suffered low precision and were affected by assumptions regarding the effective population density. Averaging estimates over data sets, the extent of gene dispersal ranged from 150 m to 1200 m according to species. Smaller gene dispersal estimates were obtained in species with heavy diaspores, which are presumably not well dispersed, and in populations with high local adult density. We suggest that limited seed dispersal could indirectly limit effective pollen dispersal by creating higher local tree densities, thereby increasing the positive correlation between pollen and seed dispersal distances. We discuss the potential and limitations of our indirect estimation procedure and suggest guidelines for future studies
ISSN: 0962-1083

hal-01031603
https://hal.archives-ouvertes.fr/hal-01031603
DOI : 10.1111/j.1365-294X.2005.02785.x

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Several studies, both theoretical and experimental, show that sedimentary rocks have a fractal pore-grain interface. In this paper a computer simulated 3-D sedimentary rock structure generated by the Relaxed Ballistic Bidisperse Deposition Model (RBBDM), is investigated to characterize the micro structure of its pores. The pore volume and the rock-pore interface show the same fractal dimension indicating that the pore volume is a fractal. The two point density correlation is computed for the pore space and the results compare favourably with the range reported from experiments. An array of 2-D X-ray tomography micrograph sections of a real sedimentary rock, an oolitic limestone (pure calcite) from the Mondeville formation of Middle Jurassic age (Paris Basin, France), was used to generate a 3-D bitmap. The 3-D real rock sample generated in this manner, was analysed for similar studies as the simulated structure. The results were compared with those obtained from simulation. The simulation results agree qualitatively with the real rock sample. Diffusion through the connected pore space of the simulated structure was studied using a random walk algorithm and the results compared with the similar simulation study done on the 3-D oolitic limestone specimen. In both cases diffusion was found to be anomalous indicating that the sedimentary rock has a fractal geometry. The favourable comparability of results between the simulated and real rock supports the usefulness of the model of sedimentary rock generation which can be applicable to transport phenomena.
ISSN: 0956-540X

hal-00823061
https://hal.archives-ouvertes.fr/hal-00823061
DOI : 10.1093/gji/ggs084

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
We assessed the occurrence of algae in five species of tank-bromeliads found in contrasting environmental sites in a Neotropical, primary rainforest around the Nouragues Research Station, French Guiana. The distributions of both algal abundance and biomass were examined based on physical parameters, the morphological characteristics of bromeliad species and with regard to the structure of other aquatic microbial communities held in the tanks. Algae were retrieved in all of the bromeliad species with mean densities ranging from ∼10(2) to 10(4) cells/mL. Their biomass was positively correlated to light exposure and bacterial biomass. Algae represented a tiny component of the detrital food web in shaded bromeliads but accounted for up to 30 percent of the living microbial carbon in the tanks of Catopsis berteroniana, located in a highly exposed area. Thus, while nutrient supplies are believed to originate from wind-borne particles and trapped insects (i.e., allochtonous organic matter), our results indicate that primary producers (i.e., autochtonous organic matter) are present in this insectivorous bromeliad. Using a 24-h incubation of size-fractionated and manipulated samples from this plant, we evaluated the impact of mosquito foraging on algae, other microorganisms and rotifers. The prey assemblages were greatly altered by the predation of mosquito larvae. Grazing losses indicated that the dominant algal taxon, Bumilleriopsis sp., like protozoa and rotifers, is a significant part of the diet of mosquito larvae. We conclude that algae are a relevant functional community of the aquatic food web in C. berteroniana and might form the basis of a complementary non-detrital food web.
ISSN: 1932-6203

hal-00819161
https://hal.archives-ouvertes.fr/hal-00819161
https://hal.archives-ouvertes.fr/hal-00819161/document
https://hal.archives-ouvertes.fr/hal-00819161/file/Brouard2011_AreAlgae.pdf
DOI : 10.1371/journal.pone.0020129

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
We present a 2-D Contact Dynamics discrete element model for simulating initiation and motion of rock avalanches, integrating hillslope geometry, Mohr-Coulomb rock behavior, pore pressure before avalanche triggering, and avalanche trigger. Avalanche motion is modeled as a dense granular flow of dry frictional and cohesive particles. On the basis of granular physics and shear experiments, we review some of the theories for the unexpectedly long runout of rock avalanches. Different causes are evoked, according to the strength (strong or weak) of the slip surface relative to the bulk. "Mechanical fluidization'' and "acoustic fluidization'' theories state that agitation of rock particles reduces frictional strength, increasing runout. Conversely, granular mechanics suggests that, as "shear-strain'' rate increases, granular material becomes more agitated, more dissipative, and more resistant. Another theory states that dynamic fragmentation of clasts creates an isotropic pressure that drives longer runout. In contrast, granular mechanics suggests that fragmentation may induce fluidization and strengthening of the granular material, while particle size reduction (among others) induces weakening of the granular flow and enhances long runout. Runout is also enhanced for column-like rock masses collapsing from steep hillslopes. Long runout may also be linked to thermal weakening mechanisms at the slip surface (e.g., thermal pressurization, and shear melting), which may lower drastically the shear strength. The model is illustrated with a hypothetical example of a rain-triggered avalanche, mobilizing shallowly dipping layers. Several phases are identified, including slope failure, avalanche triggering resulting from slip weakening, and avalanche motion in which rocks are folded and sheared.
ISSN: 0148-0227

hal-00420883
https://hal.archives-ouvertes.fr/hal-00420883
DOI : 10.1029/2008JF001072

Éditeur(s) : The Royal Society
Résumé : One of the most ubiquitous and long-lasting recent changes to the surface of our planet is the accumulation and fragmentation of plastics. Within just a few decades since mass production of plastic products commenced in the 1950s, plastic debris has accumulated in terrestrial environments, in the open ocean, on shorelines of even the most remote islands and in the deep sea. Annual clean-up operations, costing millions of pounds sterling, are now organized in many countries and on every continent. Here we document global plastics production and the accumulation of plastic waste. While plastics typically constitute approximately 10 per cent of discarded waste, they represent a much greater proportion of the debris accumulating on shorelines. Mega- and macro-plastics have accumulated in the highest densities in the Northern Hemisphere, adjacent to urban centres, in enclosed seas and at water convergences ( fronts). We report lower densities on remote island shores, on the continental shelf seabed and the lowest densities (but still a documented presence) in the deep sea and Southern Ocean. The longevity of plastic is estimated to be hundreds to thousands of years, but is likely to be far longer in deep sea and non-surface polar environments. Plastic debris poses considerable threat by choking and starving wildlife, distributing non-native and potentially harmful organisms, absorbing toxic chemicals and degrading to micro-plastics that may subsequently be ingested. Well-established annual surveys on coasts and at sea have shown that trends in mega- and macro-plastic accumulation rates are no longer uniformly increasing: rather stable, increasing and decreasing trends have all been reported. The average size of plastic particles in the environment seems to be decreasing, and the abundance and global distribution of micro-plastic fragments have increased over the last few decades. However, the environmental consequences of such microscopic debris are still poorly understood.
Philosophical Transactions of the Royal Society B (0962-8436) (The Royal Society), 2009-07 , Vol. 364 , N. 1526 , P. 1985-1998

Droits : The Royal Society 2009
http://archimer.ifremer.fr/doc/2009/publication-6952.pdf
DOI:10.1098/rstb.2008.0205
http://archimer.ifremer.fr/doc/00000/6952/

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : Gravity data and P-wave teleseismic traveltime residuals from 29 temporary broad-band stations spread over the northern margin of the Gulf of Aden (Dhofar region, Oman) were used to image lithospheric structure. We apply a linear relationship between density and velocity to provide consistent density and velocity models from mid-crust down to about 250 km depth. The accuracy of the resulting models is investigated through a series of synthetic tests. The analysis of our resulting models shows: (1) crustal heterogeneities that match the main geological features at the surface; (2) the gravity edge effect and disparity in anomaly depth locations for layers at 20 and 50 km; (3) two low-velocity anomalies along the continuation of Socotra-Hadbeen and Alula-Fartak fracture zones between 60 and 200 km depth; and (4) evidence for partial melting (3-6 per cent) within these two negative anomalies. We discuss the presence of partial melting in terms of interaction between the Sheba ridge melts and its along-axis segmentation.
ISSN: 0956-540X

hal-00456048
https://hal.archives-ouvertes.fr/hal-00456048
DOI : 10.1111/j.1365-246X.2009.04438.x