Éditeur(s) : J.-J. SYMOENS
Résumé : Un modèle Ecopath de l'estuaire du Sine-Saloum (Sénégal) comportant au total 37 groupes fonctionnels a été appliqué dans la présente étude en vue de déterminer les faits essentiels de ce système aquatique. La grande biodiversité spécifique des poissons de l'écosystème peut y jouer un rôle en assurant son intégrité, spécialement en présence de facteurs de stress, bien qu'il ait été observé que ce n'est pas entièrement le cas. Les résultats montrent qu'un autre facteur de mitigation est le niveau des forces d'interaction entre les groupes fonctionnels. La stabilité est accrue par des relations plus faibles et des pyramides plus courtes et plus larges. Bien que différentes questions se posent concernant les facteurs conduisant à la stabilité d'un système, les méthodes et les façons de les approcher devraient envisager d'en situer les résultats dans le contexte d'une théorie écologique plus large.
An Ecopath model of the Sine Saloum estuary (Senegal) with a total of 37 functional groups is used in this study to determine the key features of this aquatic system. The high fish species biodiversity in the ecosystem may play a role of ensuring its integrity, especially in the presence of stress, though it was observed that this is not entirely the case. Results show that another mitigating factor is the level of interaction strengths between functional groups. Stability is improved by weaker connectance as well as shorter and fatter pyramids. Though differing issues arise with respect to questions driving a system's stability, methods and approaches should consider placing results in the context of a broader ecological theory.
Coastal Ecosystems of West-Africa Biological Diversity-Resources-Conservation (J.-J. SYMOENS), 2005 , P. 15-26

Droits : J.-J. SYMOENS
http://archimer.ifremer.fr/doc/2005/publication-2554.pdf
http://archimer.ifremer.fr/doc/00000/2554/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La prolifération récente des résidences secondaires, observée récemment sur la côte Pacifique Sud du Nicaragua, s’inscrit dans une perspective de développement ayant trait à l’hébergement touristique. Or, le caractère immobilier prédominant de ce type d’hébergement, ainsi que les modes de consommation de ces résidents temporaires nous mettent en garde quant aux risques socioéconomiques et environnementaux encourus par les communautés autochtones. Parmi ces risques, notons les problèmes découlant de l’amplitude des variations saisonnières, de privatisation et de destruction des espaces naturels, ainsi que les perspectives de pérennisation des retombées économiques à moyen et long terme. Les auteurs de cet article remettent donc en question les prouesses attribuées à ce secteur d’activité et invitent à considérer des alternatives de développement durable du tourisme plus respectueuses des territoires d’accueil.
In recent years, there has been a proliferation of second home developments on attractive coastal regions of Central and South America. Based on the assumed benefits of second home tourism to regional economies, public authorities - accompanied by private investors – have capitalised on this sector as part of their tourism development strategies. This paper first examines the nature of recent second home tourism developments and then presents the socio-economic and environmental impacts of this phenomenon as experienced by local communities on the South Pacific Coast of Nicaragua. The main impacts include conflicts with local and indigenous communities over land use and ownership, seasonal and low-income employment generation, an increased burden on municipal budget to provide public infrastructure, and environmental degradation. It is argued that the second home tourism sector, strongly driven by private real estate investors, fails to generate tourism activities which are expected to sustain community development. Furthermore, this study indicates that municipalities concentrating on the second home tourism segment may deprive themselves of access to resources for more sustainable forms of tourism activities.
Amérique centrale
Nicaragua

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.3869
http://journals.openedition.org/etudescaribeennes/3869

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The easternmost part of the Neoproterozoic Araçuaí belt comprises an anatectic domain that involves anatexites (the Carlos Chagas unit), leucogranites and migmatitic granulites that display a well-developed fabric. Microstructural observations support that the deformation occurred in the magmatic to submagmatic state. Structural mapping integrating field and anisotropy of magnetic susceptibility (AMS) revealed a complex, 3D structure. The northern domain displays gently dipping foliations bearing a NW-trending lineation, southward, the lineation trend progressively rotates to EW then SW and the foliation is gently folded. The eastern domain displays E-W and NE-SW trending foliations with moderate to steeply dips bearing a dominantly NS trending lineation. Magnetic mineralogy investigation suggests biotite as the main carrier of the magnetic susceptibility in the anatexites and ferromagnetic minerals in the granulites. Crystallographic preferred orientation (CPO) measurements using the electron backscatter diffraction (EBSD) technique suggest that the magnetic fabric comes from the crystalline anisotropy of biotite and feldspar grains, especially. The delineation of several structural domains with contrasted flow fabric suggests a 3D flow field involving westward thrusting orthogonal to the belt, northwestward orogen-oblique escape tectonics and NS orogen-parallel flow. This complex deformation pattern may be due to interplay of collision-driven and gravity-driven deformations.
ISSN: 0191-8141

hal-00903878
https://hal.archives-ouvertes.fr/hal-00903878
DOI : 10.1016/j.jsg.2013.08.001

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Big storm events represent a major risk for populations and infrastructures settled on coastal lowlands. In the Western Mediterranean, where human societies colonized and occupied the coastal areas since the Ancient times, the variability of storm activity for the past three millennia was investigated with a multi-proxy sedimentological and geochemical study from a lagoonal sequence. Mappings of the geochemistry and magnetic susceptibility of detrital sources in the watershed of the lagoon and from the coastal barriers were undertaken in order to track the terrestrial or coastal/marine origin of sediments deposited into the lagoon. The multi-proxy analysis shows that coarser material, low magnetic susceptibility, and high strontium content characterize the sedimentological signature of the paleostorm levels identified in the lagoonal sequence. A comparison with North Atlantic and Western Mediterranean paleoclimate proxies shows that the phases of high storm activity occurred during cold periods, suggesting a climatically-controlled mechanism for the occurrence of these storm periods. Besides, an in-phase storm activity pattern is found between the Western Mediterranean and Northern Europe. Spectral analyses performed on the Sr content revealed a new 270-year solar-driven pattern of storm cyclicity. For the last 3000 years, this 270-year cycle defines a succession of ten major storm periods (SP) with a mean duration of 96 ± 54 yr. Periods of higher storm activity are recorded from >680 to 560 cal yr BC (SP10, end of the Iron Age Cold Period), from 140 to 820 cal yr AD (SP7 to SP5) with a climax of storminess between 400 and 800 cal yr AD (Dark Ages Cold Period), and from 1230 to >1800 cal yr AD (SP3 to SP1, Little Ice Age). Periods of low storm activity occurred from 560 cal yr BC to 140 cal yr AD (SP9 and SP8, Roman Warm Period) and from 820 to 1230 cal yr AD (SP4, Medieval Warm Period).
ISSN: 0277-3791

hal-01277796
https://hal.archives-ouvertes.fr/hal-01277796
DOI : 10.1016/j.quascirev.2015.10.009

Éditeur(s) : HAL CCSD
Résumé : This work focus on the characterization of the source and dynamic of compactional fluids during sedimentary burial, through two complementary examples of late orogenic oil‐field half‐grabens: The exhumed Lodève Permian Basin and a deep buried Jurassic basin in the North Viking Graben (North Sea).Constituting the main part of the thesis, a multi‐disciplinary approach was conducted in the Lodève Basin where Ba‐F‐Cu‐Pb polymetallic mineralized systems are trapped into synrift faults and paleokarsts in the carbonate basement at the hinge point of the rollover. The source, timing and P/T conditions of fluid migration were deduced from the analysis of the microfabric, the fluid inclusions microthermometry, and the isotopic (Sr, S, O, H) and Rare Earth Element (REE) signature. Results are then crossed with a structural and thermal modeling that consolidates the sequence and dynamics of fluid during burial.A similar approach was conducted in the North Viking Graben where fluid markers are restricted to 3D seismic and well core data. Comparable Ba‐Pb‐Zn veins are reported in basin margin, plugging one of the most important siliciclastic hydrocarbon reservoir in the substratum. This analysis provides additional constraints on basinal fluid behavior and allows us to propose a global dynamic model for various compositions of fluids and reservoirs.We conclude to a polyphase fluid sequence history including:(a) In the carbonate basement of the Lodève Basin, karstic paleocanyon incisions and associated cavities coupled to synrift fault, act as major drain for fluids. These structures are early affected by hypogen‐sulfuric karstification in response to the interaction between bacterial oxidation of sulfides entrapped within Lower Permian blackshales and the basement oxidizing aquifer.(b) Disequilibrium compaction initiates overpressure‐driven basinal fluid migration towards basin margins, characterized by temperatures around 150‐180°C and salinities between 9 et 18wt%eq.NaCl. Isotopic (Sr, S, O) and REE analyses reveal that Ba‐M+‐rich mineralizing fluids derived mainly from buried blackshales diagenesis. External fluids coming from the lower crust are also identified that play a key role in fluorite precipitation by the leaching of late hercynian granites (mean temperature of 250°C and salinity > 20wt%eq.NaCl).(c) During the synrift period, fluid overpressure is responsible for the periodic reactivation of fault plane according to seismic‐valve process, bedded‐control shearing and hydraulic brecciation at the basement‐seal interface. These mechanisms induce cyclic polymetallic mineralization by the mixing between in‐situ formation water and deep ascending basinal fluids.(d) Thermogenic fluids expulsion starts with last basinal fluids during late burial stage. Hydrocarbons thus migrate along the same regional pathways up to the rollover crest, where they are partly rerouted by the previous mineralized baffle.(e) In the Lodève basin, post‐rift exhumation of the margins led to the remobilization of synrift deposits by subaerial biochemical processes at the sulfate‐methane transition. The latter results from the interaction between the still active hydrocarbon dysmigration with a playa lake sulfate‐rich aquifer. Secondary low‐temperature barite fronts precipitate then within basement meteoric karsts.In addition to the « source to sink » model of basinal fluids, this work provides new insights on the early plugging of hydrocarbon reservoirs and for the metallogenesis of Mississippi Valley‐Type deposits.
Ce travail porte sur la caractérisation de la source et de la dynamique des fluides de bassin au cours de leur chargement à travers deux exemples complémentaires de demi‐grabens tardi‐orogéniques pétroliers : Le Bassin Permien de Lodève, aujourd’hui à l’affleurement et un bassin jurassique enfouis dans le North Viking Graben (Mer du Nord).Le coeur de la thèse concerne le Bassin de Lodève où, à partir d’une approche pluridisciplinaire intégrée, nous avons caractérisé l’architecture des minéralisations (Ba, F, Cu, Pb) piégées dans un réseau paléokarstique alimenté par les failles syn‐rift, dans le substratum carbonaté à l’apex du roll‐over. La source, le calendrier et les conditions de migration des fluides ont été approchés à partir de l’analyse de la micro‐fabrique, la microthermométrie sur inclusions fluides, les analyses isotopiques (Sr, S, O, H) et de Terres Rares. Les résultats analytiques ont été enfin croisés avec un modèle thermique et structural du bassin qui conforte la séquence et la dynamique du système fluide en cours d’enfouissement.Une démarche similaire, mais plus limitée, a été conduite dans le bassin du North Viking Graben où l’accès aux marqueurs fluides est restreint aux données de sismique 3D et de carottes. Comme à Lodève, les minéralisations Ba‐Pb‐Zn colmatent un réservoir dans le substratum à l’apex du roll‐over. Elles se présentent sous forme de ciments dans des grès ou des fractures. Cette analyse apporte des contraintes complémentaires et permet de proposer un modèle dynamique général avec des variantes en fonction de la nature des fluides et des réservoirs.On retiendra donc la séquence fluide suivante :(a) Dans le cas du bassin de Lodève sur substratum carbonaté, les chemins préférentiels de drainage se développent dans des paléocanyons N‐S couplés à un réseau de fractures et d’endokarsts météoriques. Ces derniers sont élargis en début de rifting par la dissolution hypogène sulfurique produite par l’oxydation bactérienne des sulfates et des pyrites des blackshales, au contact de l’aquifère oxydant du Cambrien.(b) Le déséquilibre de compaction initie la migration des fluides interstitiels en surpression vers les marges avec des températures autour de 150‐180°C et des salinités entre 9 et 18wt%eq.NaCl. Les analyses isotopiques (Sr, S, O) révèlent que la majorité des fluides provient de l’altération diagénétique des blackshales riches en métaux. Des interactions sont également mises en évidence avec des fluides profonds (entre 240°C et 260°C ; salinités > à 20wt%eq.NaCl), qui lessivent les granites tardi‐hercyniens.(c) Pendant le syn‐rift, les conditions de surpression de fluide permettent la réactivation cyclique des failles, les décollements stratigraphiques et la formation de brèches hydrauliques, favorisant la mise en connexion avec les réservoirs superficiels à l’apex du rollover. Le modèle de Sibson ajusté aux fluides de bassins est alors le moteur de la migration verticale.(d) Les fluides thermogéniques commencent à être expulsés avec les derniers fluides de compaction au cours d’un stade plus évolué de l’enfouissement en empruntant les mêmes chemins jusqu’à l’apex du roll over. Ils sont alors partiellement freinés et déviés par les colmatages minéralisés antérieurs.(e) A Lodève, la continentalisation des minéralisations antérieures au cours de l’exhumation post‐rift conduit à leur remaniement partiel au niveau de la transition sulfate‐méthane induite par l’interaction entre une playa évaporitique et la dysmigration des hydrocarbures. Des barytines secondaires de basse température, déprimées en Sr sont alors précipitées de manière synsédimentaire dans des karsts météoriques du socle.Outre l’illustration d’un modèle complet (source to sink) de dynamique des fluides dans un bassin, ce travail apporte de nouvelles contraintes dans l’approche du colmatage des réservoirs à hydrocarbures sur les têtes de blocs basculés et sur la genèse des gîtes miniers de type Mississippi Valley‐Type.
https://hal.archives-ouvertes.fr/tel-01457583

tel-01457583
https://hal.archives-ouvertes.fr/tel-01457583
https://hal.archives-ouvertes.fr/tel-01457583/document
https://hal.archives-ouvertes.fr/tel-01457583/file/th%C3%A8seLaurent2015V2.pdf

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: Homologous recombination is the key process that generates genetic diversity and drives evolution. SPO11 protein triggers recombination by introducing DNA double stranded breaks at discreet areas of the genome called recombination hotspots. The hotspot locations are largely determined by the DNA binding specificity of the PRDM9 protein in human, mice and most other mammals. In budding yeast Saccharomyces cerevisae, which lacks a Prdm9 gene, meiotic breaks are formed opportunistically in the regions of accessible chromatin, primarily at gene promoters. The genome-wide distribution of hotspots in this organism can be altered by tethering Spo11 protein to Gal4 recognition sequences in the strain expressing Spo11 attached to the DNA binding domain of the Gal4 transcription factor. To establish whether similar re-targeting of meiotic breaks can be achieved in PRDM9-containing organisms we have generated a Gal4BD-Spo11 mouse that expresses SPO11 protein joined to the DNA binding domain of yeast Gal4. RESULTS: We have mapped the genome-wide distribution of the recombination initiation sites in the Gal4BD-Spo11 mice. More than two hundred of the hotspots in these mice were novel and were likely defined by Gal4BD, as the Gal4 consensus motif was clustered around the centers in these hotspots. Surprisingly, meiotic DNA breaks in the Gal4BD-Spo11 mice were significantly depleted near the ends of chromosomes. The effect is particularly striking at the pseudoautosomal region of the X and Y chromosomes -- normally the hottest region in the genome. CONCLUSIONS: Our data suggest that specific, yet-unidentified factors influence the initiation of meiotic recombination at subtelomeric chromosomal regions.
ISSN: 1471-2164

inserm-00849779
http://www.hal.inserm.fr/inserm-00849779
http://www.hal.inserm.fr/inserm-00849779/document
http://www.hal.inserm.fr/inserm-00849779/file/1471-2164-14-493.pdf
DOI : 10.1186/1471-2164-14-493

Éditeur(s) : Oxford Univ Press
Résumé : This study presents the results of a deep seismic survey across the north Algerian margin, based on the combination of 2-D multichannel and wide-angle seismic data simultaneously recorded by 41 ocean bottom seismometers deployed along a north-south line extending 180 km off Jijel into the Algerian offshore basin, and 25 land stations deployed along a 100-km-long line, cutting through the Lesser Kabylia and the Tellian thrust-belt. The final model obtained using forward modelling of the wide-angle data and pre-stack depth migration of the seismic reflection data provides an unprecedented view of the sedimentary and crustal structure of the margin. The sedimentary layers in the Algerian basin are 3.75 km thick to the north and up to 4.5-5 km thick at the foot of the margin. They are characterized by seismic velocities from 1.9 to 3.8 km s(-1). Messinian salt formations are about 1 km thick in the study area, and are modelled and imaged using a velocity between 3.7 and 3.8 km s(-1). The crust in the deep sea basin is about 4.5 km thick and of oceanic origin, presenting two distinct layers with a high gradient upper crust (4.7-6.1 km s(-1)) and a low gradient lower crust (6.2-7.1 km s(-1)). The upper-mantle velocity is constrained to 7.9 km s(-1). The ocean-continent transition zone is very narrow between 15 and 20 km wide. The continental crust reaches 25 km thickness as imaged from the most landward station and thins to 5 km over a less than 70 km distance. The continental crust presents steep and asymmetric upper- and lower-crustal geometry, possibly due to either asymmetric rifting of the margin, an underplated body, or flow of lower crustal material towards the ocean basin. Present-time deformation, as imaged from three additional seismic profiles, is characterized by an interplay of gravity-driven mobile-salt creep and active thrusting at the foot of the tectonically inverted Algerian margin.
Geophysical Journal International (0956-540X) (Oxford Univ Press), 2014-09 , Vol. 198 , N. 3 , P. 1486-1503

Droits : 2014 The Royal Astronomical Society
http://archimer.ifremer.fr/doc/00217/32836/32150.pdf
DOI:10.1093/gji/ggu179
http://archimer.ifremer.fr/doc/00217/32836/

Éditeur(s) : HAL CCSD Editions Paralia CFL
Résumé : Barrier island hydro-morphodynamics driven by typhoon events are the major concern of the project KUNSHEN (2011-2014). It aims at providing for a deep understanding of the peculiar dynamics of sand barriers where extreme events such as typhoons have a significant impact. We present the campaigns and the protocols achieved and planned in the project, on the Wan-tzu-liao sand barrier, Cigu Lagoon, Tainan, Taiwan, from October 2011 to January 2012, during the winter storm season and during summer 2012 during the typhoon season. A set of current profilers are deployed along a cross shore transect at 7, 4 and 2 meters deep. On the Wan-tzu-liao sand barrier, 3 columns of 3 pressiometers are deployed to survey the submersion. In the same time, morphological surveys are performed on the sand barrier with DGPS to analyse any change in the shoreline position, the beach slope, and the dynamics of sand beach features. A very preliminary analysis on these on-going field surveys suggests that the word "extreme" refers more to the consequence of the forcing on the sand barrier than the intensity of the forcing itself. The strategy developed in this first step will be refined to survey the next typhoon season, from May 2012 to October 2012.
ISSN: 1760-8716

hal-00854411
https://hal.archives-ouvertes.fr/hal-00854411
DOI : 10.5150/jngcgc.2012.034-M

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
The Convective and Orographically-driven Precipitation Study (COPS) carried out in summer 2007 over northeastern France and southwestern Germany provided a fairly comprehensive description of the low-troposphere water-vapour field, thanks in particular to the deployment of two airborne differential absorption lidar systems. These lidar observations were assimilated using the 3D-Var assimilation system of the Application of Research to Operations at MEsoscale (AROME) numerical weather prediction mesoscale model. The assimilation was carried out for the period 4 July-3 August by running a three-hour forward intermittent assimilation cycle. First, the impact of the lidar observations was assessed by comparing the analyses with a set of more than 200 independent soundings. The lidar observations were found to have a positive impact on the analyses by reducing the dry bias in the first 500 m above ground level and by diminishing the root-mean-square error by roughly 15% in the first km. Then the impact of the lidar observations was assessed by comparing the precipitation forecasts (obtained with and without the lidar observations for the period 15 July-2 August) with the gridded precipitation observations provided by the Vienna Enhanced Resolution Analysis. In general, the impact was found to be positive but not significant for the 24 h precipitation and positive and significant for the 6 h precipitation, with an improvement lasting up to 24 h. Some selected case studies show that the improvement was obtained through a better depiction of convection initiation or through a more accurate positioning of the precipitation systems
ISSN: 0035-9009

hal-00659497
https://hal.archives-ouvertes.fr/hal-00659497
DOI : 10.1002/qj.1864

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Large earthquakes nucleate at tectonic plate boundaries, and their occurrence within a plate's interior remains rare and poorly documented, especially offshore. The two large earthquakes that struck the northeastern Indian Ocean on 11 April 2012 are an exception: they are the largest strike-slip events reported in historical times1, 2 and triggered large aftershocks worldwide3. Yet they occurred within an intra-oceanic setting along the fossil fabric of the extinct Wharton basin, rather than on a discrete plate boundary4, 5, 6, 7, 8. Here we show that the 11 April 2012 twin earthquakes are part of a continuing boost of the intraplate deformation between India and Australia that followed the Aceh 2004 and Nias 2005 megathrust earthquakes, subsequent to a stress transfer process recognized at other subduction zones9, 10. Using Coulomb stress change calculations, we show that the coseismic slips of the Aceh and Nias earthquakes can promote oceanic left-lateral strike-slip earthquakes on pre-existing meridian-aligned fault planes. We further show that persistent viscous relaxation in the asthenospheric mantle several years after the Aceh megathrust explains the time lag between the 2004 megathrust and the 2012 intraplate events. On a short timescale, the 2012 events provide new evidence for the interplay between megathrusts at the subduction interface and intraplate deformation offshore. On a longer geological timescale, the Australian plate, driven by slab-pull forces at the Sunda trench, is detaching from the Indian plate, which is subjected to resisting forces at the Himalayan front6, 8, 11.
ISSN: 0028-0836

hal-00767569
https://hal.archives-ouvertes.fr/hal-00767569
DOI : 10.1038/nature11520

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
We report measurements of long-period P wave polarization (P pol) in Australia and Tahiti made by combining modeling of the polarization deviation and harmonic analysis. The analysis of the deviation of the horizontal polarization of the P wave as a function of event back azimuth may be used to obtain information about (1) sensor misorientation, (2) dipping discontinuities, (3) seismic anisotropy, and (4) velocity heterogeneities beneath a seismic station. The results from harmonic analysis and a grid search using Snell's law suggest the presence of a dipping seismic discontinuity beneath stations CTAO and CAN in Australia. These results are consistent with published receiver function studies for these stations. The P pol fast axis orientation is close to the N–S absolute plate motion direction at station TAU (Tasmania), which may be due to plate-motion-driven alignment of olivine crystals in the asthenosphere. Interestingly, measurements of SKS splitting at Tahiti (French Polynesia) show an apparent isotropy, whereas an inversion of P pol observations at PPTL seismic station located in Tahiti suggests the presence of two anisotropic layers. The fast axis azimuth is oriented E–W in the upper layer, and it is close to the NW–SE orientation in the lower layer. Since P pol orientations are used for real-time earthquake locations, especially in poorly instrumented areas such as the South Pacific, we show that the bias from anisotropy and sensor misorientation determined here can be corrected to improve the location accuracy, which yields fundamental data for rapid location necessary for effective tsunami warning.
ISSN: 2169-9313

hal-01389113
http://hal.univ-reunion.fr/hal-01389113
http://hal.univ-reunion.fr/hal-01389113/document
http://hal.univ-reunion.fr/hal-01389113/file/Fontaine_Ppol_JGR2009.pdf
DOI : 10.1029/2008JB005709

Éditeur(s) : Wiley-blackwell
Résumé : 1. Abiotic and biotic variables of coastal lagoons are highly heterogeneous in both space and time, and this heterogeneity complicates the assessment of their ecological status. These variables are essential to the monitoring and preservation of these fragile ecotones and the resources and services they sustain. 2. An integrative approach for evaluating the ecological status of coastal lagoons, based on field investigations of the key parameters driving their functioning and a set of selected ecological indicators matching lagoon management information needs for societal benefits, is investigated. Consistency in lagoon status evaluation from multiple and different variables was estimated, through a case study comparing three adjacent yet contrasting French Mediterranean shallow water lagoons. 3. French Mediterranean shallow water lagoons are used to demonstrate the potential of such an approach and to underline the need for a multi-faceted framework, for correctly evaluating lagoon status, and underlining the need for high-frequency lagoon monitoring to avoid errors in status assessment and resulting management plans. 4. Based on the results, a continuous monitoring system is proposed that would record high frequency biotic and abiotic data in the lagoons. The use of such an ad hoc observatory system, based on appropriate diagnostic indicators and risk estimators would simplify interactions between scientists and managers and would improve the efficiency of their analyses. 5. A lagoon management plan based on a holistic approach is proposed to help scientists and local managers to reach a consensus about the set of ecological indicators to monitor in the lagoons needed to assess their global health status in accordance with both conservation and/or societal needs. Copyright (c) 2011 John Wiley & Sons, Ltd.
Aquatic Conservation-marine And Freshwater Ecosystems (1052-7613) (Wiley-blackwell), 2011-11 , Vol. 21 , N. 7 , P. 728-742

Droits : 2011 John Wiley & Sons, Ltd.
http://archimer.ifremer.fr/doc/00056/16702/14202.pdf
DOI:10.1002/aqc.1231
http://archimer.ifremer.fr/doc/00056/16702/

Éditeur(s) : HAL CCSD
Résumé : International audience
In this paper, we focus on the very specificity of rumors as pieces of information for modeling their process of propagation. We consider a population of pedestrians walking in a city and we assume that a rumor is transmitted by word of mouth from one to another. Although the diffusion of a rumor is of course a multi-dimensional process driven by sociological, economical and psychological elements, in this first step, we emphasize one main dimension of this complex phenomenon only. This dimension is the neighborhood of individuals likely to spread the information. With a confrontation of two antagonistic properties of the neighborhood that are profusion and scarcity of spreaders, we highlight specific characteristics of rumors. This study could lead to the psychological mechanism involved in the decision for a person to become or not a spreader himself/herself. In summary, we study if scarcity could be the silver bullet explaining how a rumor spreads.
ASONAM 2015 : IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining
Paris, France

hal-01252936
https://hal.archives-ouvertes.fr/hal-01252936
DOI : 10.1145/2808797.2809299

Éditeur(s) : HAL CCSD
Résumé : International audience
The published literature related to distributed parameter systems theory is quite large, and it is not feasible in a single book to give a detailed review on the wide historical development of all of it. Our choice of what to cover was motivated by the following consideration. Since distributed parameter systems evolve in time and space, the research investigations on their analysis and control focus on considering the whole system domain for any study. We feel strongly that within this research field, animportant consideration was missing; that of considering that the system may give raise to prescribed subdomains (regions) where one has to achieve an objective. This is the case of so many applications ranging from engineering to life sciences. For that reason, covering classical prerequisite in analysis and control areas, we have devoted the book to the extension of the classical distributed parameter results to regional ones.Students of mathematics do not come into contacts with distributed parameter systems during their classes. They are introduced to them when they start research and often they are influenced by the knowledge and the advice of experimented scientists. This was our case at the very beginning of these research investigations in the mid 70’s. We would liketo express our special thanks to many of them and mainly late Professor Anthony J. Pritchard (University of Warwick, GB) and late Professor J.L. Lions (College de France) who were so encouraging in front of our determination in driving an academic carrier. We also express our thanks to our co-workers and research students. We wish to acknowledge the feedback from all those who took courses based on various parts of this book.This book may be used by graduate students in mathematics, engineering, physics, and even by students from other fields such as life or environmental sciences. This book may also be used as an information source for researchers and education professionals. We assume that the readers already know the basic concepts of analysis and control of distributedparameter systems.
https://hal.archives-ouvertes.fr/hal-01297188

ISBN : 978-2-35412-140-2
hal-01297188
https://hal.archives-ouvertes.fr/hal-01297188

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Losses of corals worldwide emphasize the need to understand what drives reef decline. Stressors such as overfishing and nutrient pollution may reduce resilience of coral reefs by increasing coral–algal competition and reducing coral recruitment, growth and survivorship. Such effects may themselves develop via several mechanisms, including disruption of coral microbiomes. Here we report the results of a 3-year field experiment simulating overfishing and nutrient pollution. These stressors increase turf and macroalgal cover, destabilizing microbiomes, elevating putative pathogen loads, increasing disease more than twofold and increasing mortality up to eightfold. Above-average temperatures exacerbate these effects, further disrupting microbiomes of unhealthy corals and concentrating 80% of mortality in the warmest seasons. Surprisingly, nutrients also increase bacterial opportunism and mortality in corals bitten by parrotfish, turning normal trophic interactions deadly for corals. Thus, overfishing and nutrient pollution impact reefs down to microbial scales, killing corals by sensitizing them to predation, above-average temperatures and bacterial opportunism.
ISSN: 2041-1723

Droits : http://creativecommons.org/licenses/by/
hal-01340547
https://hal-univ-perp.archives-ouvertes.fr/hal-01340547
https://hal-univ-perp.archives-ouvertes.fr/hal-01340547/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01340547/file/ncomms11833.pdf
DOI : 10.1038/ncomms11833

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Magnetic Resonance Imaging (MRI), a reference examination for cardiac morphology and function in humans, allows to image the cardiac right ventricle (RV) with high spatial resolution. The segmentation of the RV is a difficult task due to the variable shape of the RV and its ill-defined borders in these images. The aim of this paper is to evaluate several RV segmentation algorithms on common data. More precisely, we report here the results of the Right Ventricle Segmentation Challenge (RVSC), concretized during the MICCAI'12 Conference with an on-site competition. Seven automated and semi-automated methods have been considered, along them three atlas-based methods, two prior based methods, and two prior-free, image-driven methods that make use of cardiac motion. The obtained contours were compared against a manual tracing by an expert cardiac radiologist, taken as a reference, using Dice metric and Hausdorff distance. We herein describe the cardiac data composed of 48 patients, the evaluation protocol and the results. Best results show that an average 80% Dice accuracy and a 1cm Hausdorff distance can be expected from semi-automated algorithms for this challenging task on the datasets, and that an automated algorithm can reach similar performance, at the expense of a high computational burden. Data are now publicly available and the website remains open for new submissions (http://www.litislab.eu/rvsc/).
ISSN: 1361-8415

hal-01141170
https://hal.archives-ouvertes.fr/hal-01141170
PUBMED : 25461337

Résumé : La banane plantain (Musa paradisiaca) est l’aliment de base de millions de personnes dans le monde et sa culture génère des revenus permanents pour un grand nombre d’agriculteurs, dans des plantations de taille petite ou moyenne. Comme dans d’autres régions tropicales, la culture du plantain en Guadeloupe et en Haïti est soumise à de fortes contraintes parasitaires aussi bien telluriques (i.e. du sol : nématodes phytoparasites et charançon du bananier) qu’aériennes (Cercosporiose noire notamment). Les moyens de lutte conventionnels reposent sur l’usage de produits de synthèse dont les effets néfastes sur l’environnement (sols, eaux, animaux) comme sur la santé humaine ne sont plus supportables. Il est donc urgent de réfléchir à des solutions agro-écologiques permettant de rétablir les équilibres biologiques, de maintenir une bonne qualité des sols et une production optimale dans les systèmes de culture plantains. C’est le but de ce travail de thèse qui couple la réalisation d’un diagnostic agro-écologique dans des parcelles paysannes, et le test d’alternatives agro-écologiques en milieu semi-contrôlé. Pour ce faire, une typologie des systèmes de culture plantains a été réalisée à l’issue d’une enquête agro-environnementale dans les deux zones d’étude. Elle a permis de sélectionner 23 parcelles en Guadeloupe et 12 en Haïti dans lesquelles un diagnostic agro-écologique a été conduit. Sur la base de ce diagnostic et de la recherche d’alternatives agro-écologiques à l’usage des produits chimiques, une expérimentation au champ a été mise en place en Guadeloupe en station de recherche, permettant le test de trois pratiques culturales innovantes pour le plantain (seules et combinées), à savoir : i) l’introduction d’une plante de service Paspalum notatum pour la gestion des adventices et la réduction de l’utilisation d’herbicides ; ii) l’apport de vermicompost pour le contrôle des nématodes phytoparasites inféodés au bananier plantain et la fertilisation de celui-ci ; iii) l’utilisation de plants sains PIF (Plants Issus de Fragments de tiges) indemnes de nématodes et de larves de charançon du bananier. La typologie des systèmes de culture plantains révèle que : i) en Guadeloupe les précédents : jachère, ananas et banane plantain sont prédominants avec un niveau d’intensification faible (apports d’intrants chimiques faibles et peu fréquents) ou élevé (apports d’intrants chimiques élevés et plus fréquents) ; ii) en Haïti, les précédents : jachère, banane plantain et manioc prédominent avec un niveau d’intensification faible ou nul (apport d’intrants inexistant). Les résultats du diagnostic agro-écologique montrent que, i) lorsque le niveau d’intensification est faible, les bananeraies plantains pérennes et le précédent-ananas permettent de maintenir une bonne qualité du sol et une bonne régulation des parasites telluriques ; ii) lorsque le niveau d’intensification est fort, les populations d’ingénieurs du sol diminuent drastiquement, alors que le cortège parasitaire tellurique augmente sans que cela n’affecte l’obtention de bons niveaux de rendement instantannés (parcelles précédées d’ananas ou d’une jachère principalement) ; iii) en absence totale de fertilisation, il résulte une diminution de l’activité biologique du sol mais aussi du rendement du plantain, exacerbé par le choix des précédents-culturaux (manioc ou banane plantain) en lien avec les contraintes pédoclimatiques et la maladie des raies noires (Cercosporiose noire) causée par Mycosphaerella fijiensis, notamment au sein des parcelles Haïtiennes ; iv) la succession plantain/plantain est la plus pénalisante vis-à-vis de la culture du plantain, car quelque soit le niveau d’intensification, le rendement reste relativement faible, en lien avec une dégradation de l’état sanitaire, comparativement aux autres précédents.
Plantain (Musa paradisiaca) is the staple food of millions of people worldwide and its cropping generates ongoing revenues for many farmers who are planting small or medium size areas. As in other tropical regions, plantain cultivation in Guadeloupe and Haiti is under heavy parasitic constraints terrestrial (plant-parasitic nematodes and banana weevil) as well as aerial (black Sigatoka in particular). Conventional means of control based on the use of synthetic products which adverse effects on the environment (soil, water, animals ...) as on human health are not bearable any more. It is thus urgent to think about agroecological solutions allowing to restore the biological balances, to maintain good soil quality and optimal plantain cropping systems.This is the ultimate goal of this thesis which couples the realization of an agroecological diagnosis in peasants’ plots, and the test of agroecological alternatives in semi-controlled conditions. To do this, a typology of plantain cropping systems was carried out from an agrienvironmental survey in the two study areas. It allowed to select 23 plots in Guadeloupe and 12 in Haiti in which an agroecological diagnosis was implemented. Based on this diagnosis and the research of agroecological alternatives to the use of chemicals, a field experiment was set up in Guadeloupe, in an experimental station allowing the test of three innovative practices for plantain cultivation (alone and combined), namely : i) the introduction of a cover-crop Paspalum notatum for weed control while reducing the use of herbicides ; ii) the input of worms’ compost to control plant-parasitic nematodes specific to plantain and to fertilize it ; iii) the use of healthy “PIF” plants (plants issued from stem fragments) free from telluric pests (nematodes and weevil’s larvaes).The typology of plantains cropping systems shows: i) in Guadeloupe the previous crops are: fallow pineapple and plantain predominate with a low level of intensification (low and infrequent chemical inputs) or high (high and frequent chemical inputs); ii) in Haiti, the previous crops are: fallow, plantain and cassava predominate with a low level or no intensification at all (no inputs). The results of the agroecological analysis show that : i) when the level of intensification is low, perennial plantain and pineapple as previous crops help maintaining a good soil quality and a good regulation of the telluric pests ; ii) when the level of intensification is strong, the soil engineers drastically reduce, while the density of telluric parasites increases without affecting good levels of instantaneous yields (plots where the previous crop is pineapple or mostly fallow) ; iii) when the fertilization is totally missing, it decreases the biological activity of the soil furthermore the plantain yields, exacerbated by the choice of the previous crop (cassava or plantain), in connection with soils and climate constraints and the black Sigatoka caused by Mycosphaerella fijiensis, especially in the Haitian plots ; iv) the crop succession plantain/plantain is the most critical regarding the plantain’s cropping, because whatever the level of intensification, the yields remain relatively low in connection with a degradation of the health state, compared to other previous crops.The driving of an experiment in a research station shows that on the scale of one year, the three tested innovative practices allow maintaining a good soils quality. Healthy plants "PIF" have a better health state (absence of plant parasitic nematodes in the roots) which helps a significant increase of the yields. Cover-crop P. notatum helps the weeds and the soil pests control and favors the improvement of soil biological activity and plantain yields. Worms’ compost contributes to the maintenance of a better soils quality while allowing the regulation of the populations of plant-parasitic nematodes of the plantains.

http://www.theses.fr/2014AGUY0758/document

Éditeur(s) : HAL CCSD Springer New York
Résumé : International audience
Estrogen receptor α (ERα) exerts regulatory actions through genomic mechanisms. In the classical pathway, ligand-activated ERα binds directly to DNA through estrogen response elements (ERE) located in the promoter of target genes. ERα can also exert indirect regulation of transcription via protein-protein interaction with other transcription factors such as AP-1. Several ERα synonymous polymorphisms have been identified and efforts to understand their implications have been made. Nevertheless effects of synonymous polymorphisms are still neglected. This chapter focuses on the experimental procedure employed in order to characterize the transcriptional activity of a synonymous polymorphism of the ERα (rs746432) called Alanine 87 (Ala87). Activity of both WT and Ala87 ERα isoforms on transcriptional pathways can be analyzed in transiently transfected cells using different reporter constructs. ERα efficiency on the classical genomic pathway can be analyzed by determining its transactivation activity on an ERE-driven thymidine kinase (TK) promoter controlling the expression of the luciferase reporter gene. Transcriptional activity through the indirect genomic pathway can be analyzed by employing an AP-1 DNA response element-driven promoter also controlling the expression of luciferase reporter gene
Estrogen Receptors

ISBN : 978-1-4939-3126-2
hal-01237073
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01237073
DOI : 10.1007/978-1-4939-3127-9_22

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Liver X Receptors (LXRs) α and β and the Peroxisome Proliferator-Activated Receptor α (PPARα) are transcription factors that belong to class II nuclear receptors. They drive the expression of genes involved in hepatic lipid homeostasis and therefore are important targets for the prevention and treatment of nonalcoholic fatty liver disease (NAFLD). LXRs and PPARα are regulated by endogenous ligands, oxysterols and fatty acid derived molecules, respectively. In the liver, pharmacological activation of LXRs leads to the over-expression of genes involved in de novo lipogenesis, while PPARα is critical for fatty acid catabolism in nutrient deprivation. Even if these two nuclear receptors seemed to play opposite parts, recent studies have highlighted that PPARα also influence the expression of genes involved in fatty acids synthesis. In this study, we used pharmacological approaches and genetically engineered mice to investigate the cross-talk between LXRs and PPARα in the regulation of genes responsible for lipogenesis. We first investigated the effect of T0901317 and fenofibrate, two synthetic agonists of LXRs and PPARα, respectively. As expected, T0901317 and fenofibrate induce expression of genes involved LXR-dependent and PPARα-dependent lipogenic responses. Considering such overlapping effect, we then tested whether LXR agonist may influence PPARα driven response and vice versa. We show that the lack of PPARα does not influence the effects of T0901317 on lipogenic genes expression. However, PPARα deficiency prevents the up-regulation of genes involved in ω-hydroxylation that are induced by the LXR agonist. In addition, over-expression of lipogenic genes in response to fenofibrate is decreased in LXR knockout mice as well as the expression of PPARα target genes involved in fatty acid oxidation. Altogether, our work provides in vivo evidence for a central interconnection between nuclear receptors that drive hepatic lipid metabolism in response to oxysterol and fatty acids.
ISSN: 0300-9084

inserm-00872582
http://www.hal.inserm.fr/inserm-00872582
DOI : 10.1016/j.biochi.2012.09.028
PUBMED : 23063693

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Transmembrane CD95L (Fas ligand) can be cleaved to release a promigratory soluble ligand, cl-CD95L, which can contribute to chronic inflammation and cancer cell dissemination. The motility signaling pathway elicited by cl-CD95L remains poorly defined. Here, we show that in the presence of cl-CD95L, CD95 activates the Akt and RhoA signaling pathways, which together orchestrate an allosteric activation of the Na+/H+ exchanger NHE1. Pharmacologic inhibition of Akt or ROCK1 independently blocks the cl-CD95L-induced migration. Confirming these pharmacologic data, disruption of the Akt and ROCK1 phosphorylation sites on NHE1 decreases cell migration in cells exposed to cl-CD95L. Together, these findings demonstrate that NHE1 is a novel molecular actor in the CD95 signaling pathway that drives the cl-CD95L-induced cell migration through both the Akt and RhoA signaling pathways.
ISSN: 2045-2322

hal-01334067
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01334067
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01334067/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01334067/file/Cleaved%20FAS%20ligand%20CC-BY.pdf
DOI : 10.1038/srep28008