Éditeur(s) : Inter-research
Résumé : Environmental conditions experienced by aquatic organisms are archived in biogenic carbonates such as fish otoliths, bivalve shells and coral skeletons. These calcified structures present an accretionary growth and variations in optical properties - color or opacity - that are used to reconstruct time. Full and reliable exploitation of the information extracted from these structures is, however, often limited as the metabolic processes that control their growth and their optical properties are poorly understood. Here, we propose a new modeling framework that couples both the growth of a biogenic carbonate and its optical properties with the metabolism of the organism. The model relies on well-tested properties of Dynamic Energy Budget (DEB) theory. It is applied to otoliths of the Bay of Biscay anchovy (Engraulis encrasicolus) for which a DEB model has been previously developed. The model reproduces well-known otolith patterns and thus provides us with mechanisms for the metabolic control of otolith size and opacity at the scale of an individual lifespan. Two original contributions using this framework are demonstrated. First, the model can be used to reconstruct the temporal variations in the food assimilated by an individual fish. Reconstructing food conditions of past and present aquatic species in their natural environment is key ecological information to better understand population dynamics. Second, we show that non-seasonal checks can be discriminated from seasonal checks, which is a well-recognized problem when interpreting fish otoliths. We discuss further developments of the model and the experimental settings required to test this new promising framework.
Marine Ecology-progress Series (0171-8630) (Inter-research), 2012 , Vol. 447 , P. 151-164

Droits : 2012 Inter-Research
http://archimer.ifremer.fr/doc/00060/17082/14593.pdf
DOI:10.3354/meps09492
http://archimer.ifremer.fr/doc/00060/17082/

Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : International audience
Context and aim : This study aimed to examine the effect of the tension wood G‐layer on the viscoelastic properties of wood. Methods : Tension wood and opposite wood samples were obtained from six French Guianese tropical rainforest species (Sextonia rubra, Ocotea guyanensis, Inga alba, Tachigali melinoni, Iyranthera sagotiana and Virola michelii); the tension wood of the former three of these species had a Glayer, whilst the tension wood from the latter three had no Glayer. Tensile dynamic mechanical analysis (DMA) was performed on green never dried wood samples in the longitudinal direction with samples submerged in a water bath at a temperature (30°C) and frequency (1 Hz) representative of the conditions experienced by wood within a living tree. Then, DMA was repeated with samples conditioned to an air-dried state. Finally, samples were oven-dried to measure longitudinal shrinkage. Results : Tension wood did not always have a higher longitudinal storage (elastic) modulus than opposite wood from the same tree regardless of the presence or absence of a G‐layer. For the species containing a G‐layer, tension wood had a higher damping coefficient and experienced a greater longitudinal shrinkage upon drying than opposite wood from the same species. No difference was found in damping coefficients between tension wood and opposite wood for the species that had no G‐layer. Conclusion : It is proposed that the different molecular composition of the G-layer matrix has an influence on the viscoelasticity of wood, even if a biomechanical gain is not yet clear. This study shows that rheological properties and longitudinal shrinkage can be used to detect the presence of a G‐layer in tension wood.
ISSN: 1286-4560

hal-00677460
https://hal.archives-ouvertes.fr/hal-00677460
https://hal.archives-ouvertes.fr/hal-00677460/document
https://hal.archives-ouvertes.fr/hal-00677460/file/Clair2.pdf
DOI : 10.1007/s13595-011-0164-1

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
Numerical models show that small-scale convection (SSC) occurring atop a mantle plume is a plausible mechanism to rejuvenate the lithosphere. The triggering of SSC depends on the density contrast and on the rheology of the unstable layer underlying the stagnant upper part of the thermal boundary layer (TBL). Partial melting may change both properties. We analyze, using 2-D numerical simulations, how partial melting influences the dynamics of time-dependent SSC instabilities and the resulting thermo-mechanical rejuvenation of an oceanic plate moving atop of a plume. Our simulations show a complex behavior, with acceleration, no change, or delay of the SSC onset, due to competing effects of the latent heat of partial melting, which cools the plume material, and of the buoyancy increase associated with both melt retention and depletion of residue following melt extraction. The melt-induced viscosity reduction is too localized to affect significantly SSC dynamics. Faster SSC triggering is promoted for low melting degrees (low plume temperature anomalies, thick lithosphere, or fast moving plates), which limit both the temperature reduction due to latent heat of melting and the accumulation of depleted buoyant residue in the upper part of the unstable layer. In contrast, high partial melting degrees lead to a strong temperate decrease due to latent heat of melting and development of a thick depleted layer within the sublithospheric convecting layer, which delay the development of gravitational instabilities. Despite differences in SSC dynamics, the thinning of the lithosphere is not significantly enhanced relatively to simulations that neglect partial melting.
ISSN: 1525-2027

hal-01277175
https://hal.archives-ouvertes.fr/hal-01277175
DOI : 10.1002/2015GC005967

Éditeur(s) : HAL CCSD
Résumé : The presence of biological matter (biofilms) in deep geological sites for storage of, for instance, toxic elements or groundwater in aquifers was clearly proved. That biomass triggers physical and chemical processes which greatly modify the durability and the sustainability of the sites. These processes, mainly from oxidative/reductive reactions, are poorly understood. This is mainly due to the fact that former studies were done at the macroscopic level far away from the micrometric scale where relevant processes induced by bacteria take place. Investigations at microscopic level are needed. Thus, we developed an experimental set-up based on the combined use of optical microscopy (transmission), atomic force microscopy (AFM) and electrical and electro-chemical AFM microscopy (EC_AFM) in order to get simultaneous information on topographic and electro-chemical processes. The first highly sensitive step was to use AFM with biological samples in liquid environment: wepresent here a study about AFM imaging of living, moving or self-immobilized bacteria, in their genuine physiological liquid medium and in true in vivo conditions. No external immobilization protocol, neither chemical nor mechanical was needed. For the first time, the native gliding movements of Gram negative Nostoc cyanobacteria upon the surface were studied by AFM. AFM height and mechanical stiffness data were simultaneously acquired. From these, mechanical parameters, inner turgor pressure and Young modulus, were derived for different bacterial species (Anabaenopsis circularis, Rhodococcus wratislaviensis). Our study revealed that AFM imaging is thus possible on moving living species. These results open a large window on new studies of both dynamical phenomena of practical and fundamental interests such as the formation of biofilms and dynamic properties of bacteria in real physiological conditions. The second delicate step was to combine AFM and optical measurements with electrical ones. We mounted a new experimental set-up coupling real-time (i) monitoring of optical properties as the optical density (OD) evolution related to bulk bacterial growth in liquid or as the counting of number of bacteria adhering on the surface of the sample as well and (ii) electrical and electrochemical measurements. Furthermore, these results will shortly be applied to the optimized monitoring of the in-situ activity of bacteria consuming oil pollutants, following this way, in real-time, the bioremediation of an oilcontaminated soil (ANR ECOTECH_BIOPHY program).
La présence de matière biologique (biofilms) dans les sites de stockage géologique profond, d'éléments toxiques ou encore de l'eau potable des aquifères est maintenant clairement démontrée. Cette biomasse est à l'origine de processus physiques et chimiques qui modifient considérablement la durabilité et la pérennité des sites concernés. Ces processus, principalement de type oxydo-réductif, sont encore mal compris. Ceci est principalement dû aux méthodes d'investigation, principalement macroscopiques, loin de l'échelle micrométrique caractéristique des bactéries. Seules des études, basées sur des méthodes d'investigation locale, peuvent apporter les informations requises. Ainsi, nous avons développé un dispositif expérimental basé sur l'utilisation combinée de la microscopie optique (en transmission), la microscopie à force atomique (AFM) et la microscopie AFM en mode électrique et électrochimique (EC_AFM) afin d'obtenir des informations simultanées sur la topographie de l'échantillon et sur les processus électrochimiques à l'échelle des bactéries. La première étape sensible consistait à utiliser l'AFM sur des échantillons biologiques en milieu liquide: nous présentons ici les résultats de l'imagerie AFM en milieu liquide de plusieurs types de bactéries dans leurs conditions physiologiques naturelles (conditions in vivo). Aucun protocole d'immobilisation, ni chimique ni mécanique, n'a été nécessaire; et pour la première fois, les mouvements de reptation de cyanobactéries Nostoc ont été étudiés par l'AFM. Les études AFM ont permis d'acquérir des données topographiques mais aussi mécaniques : nous avons pu ainsi mesurer le module d'Young, la pression de turgescence de différentes souches bactériennes (Anabaenopsis circularis, Rhodococcus wratislaviensis). Cette étude complète, a révélé que l'imagerie AFM est donc possible sur des espèces vivantes en mouvement. Ces résultats ouvrent une grande fenêtre sur de nouvelles études d'intérêts tels que la formation de biofilms et les propriétés dynamiques de bactéries dans des conditions physiologiques réelles. La deuxième étape délicate était de combiner l'AFM aux mesures optiques et électriques. Nous avons développé un nouveau dispositif expérimental permettant (i) le suivi de l'évolution de la croissance bactérienne par la mesure des propriétés optiques comme la densité optique DO (pour le développement bactérien en volume - milieu planctonique) , ou l'analyse de l'image du substrat par comptage du nombre de bactéries sur la surface de l'échantillon (biofilm), et (ii) les mesures électriques et électrochimiques. L'ensemble de ces résultats sera prochainement appliqué au développement de nouveaux outils de surveillance d'une biodépollution de terrain contaminé par les hydrocarbures, par le suivi in situ et en temps réel de l'activité de bactéries dépolluantes (ECOTECH_BIOPHY ANR).
https://tel.archives-ouvertes.fr/tel-01044714

tel-01044714
https://tel.archives-ouvertes.fr/tel-01044714
https://tel.archives-ouvertes.fr/tel-01044714/document
https://tel.archives-ouvertes.fr/tel-01044714/file/theseDhahri2013.pdf

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : International audience
*Context Increased knowledge on diversity in wood properties would have implications both for fundamental research and for promoting a diversification of uses as material. *Aims The objective is to contribute to overcoming the critical lack of data on the diversity of wood dynamic mechanical/viscoelastic vibrational properties, by testing lesser-known species and categorizing sources of variability. *Methods Air-dry axial specific dynamic modulus of elasticity (E'/γ) and damping coefficient (tanδ) were measured on a wide sampling (1792 specimens) of 98 wood types from 79 species. An experimental device and protocol was designed for conducting systematic (i.e. rapid and reproducible) characterizations. *Results Diversity at the specimens' level corroborates the "standard" relationship between tanδ and E'/γ, which is discussed in terms of orientation of wood elements and of chemical composition. Diversity at the species level is expressed on the basis of results for normal heartwood, with specific gravity (γ) ranging from 0.2 to 1.3. Axial E'/γ ranges from 9 to 32 GPa and tanδ from 4×10-3 to 19×10-3. Properties distribution follows a continuum, but with group characteristics. The lowest values of tanδ are only found in certain tropical hardwoods. Results can also suggest alternative species for musical instruments making.
Annals of Forest Science

hal-00808242
https://hal.archives-ouvertes.fr/hal-00808242
https://hal.archives-ouvertes.fr/hal-00808242/document
DOI : 10.1007/s13595-011-0166-z

Éditeur(s) : HAL CCSD De Gruyter
Résumé : International audience
This study aims at better understanding the respective influences of specific gravity (γ), microfibril angle (MFA), and cell-wall matrix polymers on viscoelastic vibrational properties of wood in axial direction. The wide variations of properties between normal wood (NW) and compression wood (CW) are in focus. Three young bent trees (Picea abies, Pinus sylvestris and Pinus pinaster) that recovered verticality were sampled. Several observed differences between NW and CW were highly significant in terms of anatomical, physical (γ, shrinkage, CIELab colorimetry), mechanical (compressive strength), and vibrational properties. Specific dynamic modulus of elasticity (E'/γ) decreases with increasing MFA, and Young's modulus (E') can be satisfactorily explained by γ and MFA. Apparently, the type of the cell wall polymer matrix is not influential in this regard. The damping coefficient (tanδ) does not depend solely on MFA of NW and CW. The tanδ - E'/γ relationship evidences that, at equivalent E'/γ, the tanδ of CW is approx. 34% lower than that of NW. This observation is ascribed to the more condensed nature of CW lignins, and this is discussed in the context of previous findings in other hygrothermal and time/frequency domains. It is proposed that the lignin structure and the amount and type of extractives, which are both different in various species, are partly responsible for taxonomy-related damping characteristics.
ISSN: 0018-3830

hal-00808062
https://hal.archives-ouvertes.fr/hal-00808062
https://hal.archives-ouvertes.fr/hal-00808062/document
https://hal.archives-ouvertes.fr/hal-00808062/file/Changes_viscoelastic_vibrational_Bremaud_al.pdf
DOI : 10.1515/hf-2011-0186

Éditeur(s) : HAL CCSD
Résumé : 38 pages
Rapport
The Chicxulub impact crater, México, is unique. It is the only known terrestrial impact structure that has been directly linked to a mass extinction event and the only terrestrial impact with a global ejecta layer. Of the three largest impact structures on Earth, Chicxulub is the best preserved. Chicxulub is also the only known terrestrial impact structure with an intact, unequivocal topographic peak ring. Chicxulub’s role in the Cretaceous/Paleogene (K-Pg) mass extinction and its exceptional state of preservation make it an important natural laboratory for the study of both large impact crater formation on Earth and other planets and the effects of large impacts on the Earth’s environment and ecology. Our understanding of the impact process is far from complete, and despite more than 30 years of intense debate, we are still striving to answer the question as to why this impact was so catastrophic.During International Ocean Discovery Program (IODP) Expedition 364, Paleogene sediments and lithologies that make up the Chicxulub peak ring were cored to investigate (1) the nature and formational mechanism of peak rings, (2) how rocks are weakened during large impacts, (3) the nature and extent of post-impact hydrothermal circulation, (4) the deep biosphere and habitability of the peak ring, and (5) the recovery of life in a sterile zone. Other key targets included sampling the transition through a rare midlatitude section that might include Eocene and Paleocene hyperthermals and/or the Paleocene/Eocene Thermal Maximum (PETM); the composition and character of the impact breccias, melt rocks, and peak-ring rocks; the sedimentology and stratigraphy of the Paleocene–Eocene Chicxulub impact basin infill; the chronology of the peak-ring rocks; and any observations from the core that may help us constrain the volume of dust and climatically active gases released into the stratosphere by this impact. Petrophysical property measurements on the core and wireline logs acquired during Expedition 364 will be used to calibrate geophysical models, including seismic reflection and potential field data, and the integration of all the data will calibrate impact crater models for crater formation and environmental effects. The proposed drilling directly contributes to IODP Science Plan goals:Climate and Ocean Change: How resilient is the ocean to chemical perturbations? The Chicxulub impact represents an external forcing event that caused a 75% level mass extinction. The impact basin may also record key hyperthermals within the Paleogene.Biosphere Frontiers: What are the origin, composition, and global significance of subseafloor communities? What are the limits of life in the subseafloor? How sensitive are ecosystems and biodiversity to environmental change? Impact craters can create habitats for subsurface life, and Chicxulub may provide information on potential habitats for life, including extremophiles, on the early Earth and other planetary bodies. Paleontological and geochemical studies at ground zero will document how large impacts affect ecosystems and effects on biodiversity.Earth Connections/Earth in Motion: What are the composition, structure and dynamics of Earth’s upper mantle? What mechanisms control the occurrence of destructive earthquakes, landslides, and tsunami? Mantle uplift in response to impacts provides insight into dynamics that differ between Earth and other rocky planets. Impacts generate earthquakes, landslides, and tsunami, and scales that generally exceed plate tectonic processes yield insight into effects, the geologic record, and potential hazards.IODP Expedition 364 was a Mission Specific Platform expedition to obtain subseabed samples and downhole logging measurements from the sedimentary cover sequence and peak ring of the Chicxulub impact crater. A single borehole was drilled into the Chicxulub impact crater on the Yucatán continental shelf, recovering core from 505.7 to 1334.73 m below seafloor with ~99% core recovery and acquiring downhole logs for the entire depth.
International Ocean Discovery Program

hal-01639520
https://hal.archives-ouvertes.fr/hal-01639520
DOI : 10.14379/iodp.pr.364.2017

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We performed torsional deformation experiments on pre-hydrated fine-grained olivine aggregates using an innovative experimental assembly to investigate water weakening in mantle rocks at high shear strains. San Carlos olivine powder was cold-pressed and then hot-pressed under hydrous conditions, producing aggregates with average grain sizes of 7 or 15 μm. Deformation experiments were performed in a high-resolution gas-medium apparatus equipped with a torsional actuator, under a confining pressure of 300 MPa, a temperature of 1200 °C, and constant shear strain rates ranging from 8 × 10−5 to 1.4 × 10−4 s−1. Maximum shear stresses range from 150 to 195 MPa. These values are 30% lower relative to those determined in previous torsion experiments on dry, fined-grained dunites under similar conditions. Textures and microstructures of the starting and deformed specimens were characterized by scanning and transmission electron microscopy. All deformed aggregates exhibit a shape-preferred orientation marking a foliation and lineation, as well as a reduction in mean grain size from 15 μm down to 3-4 μm due to dynamic recrystallization. Olivine crystallographic fabrics developed rapidly (γ < 0.1), but their strength, characterized by the J-index, is low compared to naturally deformed peridotites or to polycrystalline olivine deformed at similar finite shear strains under dry conditions. The crystallographic fabrics are consistent with deformation by a dislocation accommodated creep mechanism with activation of multiple {0 k l}[1 0 0] systems, among which the (0 1 0)[1 0 0] slip system is dominant, and minor participation of the (0 1 0)[0 0 1] slip system. Transmission electron microscopy confirmed the occurrence of dislocations with [1 0 0] and [0 0 1] Burgers vectors in most grains. Analysis of unpolarized infrared spectra indicates that hydrogen concentration in the olivine lattice is below the saturation level of 18 ppm wt H2O, which is similar to those typically observed in spinel-bearing peridotite xenoliths, and also provide evidence for water-rich inter-granular material trapped in pores and grain boundaries. Seismic properties computed from the CPO observations correspond to those most commonly observed in naturally deformed mantle peridotites with fast P-wave propagation and S-wave polarization subparallel to the shear direction. These torsion experiments on fine-grained olivine polycrystals under hydrous conditions indicate that water weakening under lithospheric conditions is linked to various defects with hydrogen in the olivine structure, as well as with water-derived species in grain boundaries or pores.
ISSN: 0031-9201

hal-00745170
https://hal.archives-ouvertes.fr/hal-00745170
DOI : 10.1016/j.pepi.2012.05.001

Éditeur(s) : HAL CCSD American Physical Society
Résumé : International audience
This is the first of two papers investigating the mechanical response of cemented granular materials by means of contact dynamics simulations. In this paper, a two-dimensional polydisperse sample with high-void ratio is constructed and then sheared in a simple shear numerical device at different confinement levels. We study the macroscopic response of the material in terms of mean and deviatoric stresses and strains. We show that the introduction of a local force scale, i.e., the tensile strength of the cemented bonds, causes the material to behave in a rigid-plastic fashion, so that a yield surface can be easily determined. This yield surface has a concave-down shape in the mean: deviatoric stress plane and it approaches a straight line, i.e., a Coulomb strength envelope, in the limit of a very dense granular material. Beyond yielding, the cemented structure gradually degrades until the material eventually behaves as a cohesionless granular material. Strain localization is also investigated, showing that the strains concentrate in a shear band whose thickness increases with the confining stress. The void ratio inside the shear band at the steady state is shown to be a material property that depends only on contact parameters.
ISSN: 1539-3755

hal-00523453
https://hal.archives-ouvertes.fr/hal-00523453
DOI : 10.1103/PhysRevE.82.011303

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
According to the World Health Organization, around 20% of all cancers would be due to environmental factors. Among these factors, several chemicals are indeed well recognized carcinogens. The widespread contaminant benzo[a]pyrene (B[a]P), an often used model carcinogen of the polycyclic aromatic hydrocarbons' family, has been suggested to target most, if not all, cancer hallmarks described by Hanahan and Weinberg. It is classified as a group I carcinogen by the International Agency for Research on Cancer; however, the precise intracellular mechanisms underlying its carcinogenic properties remain yet to be thoroughly defined. Recently, the pH homeostasis, a well known regulator of carcinogenic processes, was suggested to be a key actor in both cell death and Warburg-like metabolic reprogramming induced upon B[a]P exposure. The present review will highlight those data with the aim of favoring research on the role of H + dynamics in environmental carcinogenesis.
ISSN: 1044-579X

hal-01531077
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01531077
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01531077/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01531077/file/Hardonniere%20et%20al.%20-%20Environmental%20carcinogenesis%20and%20pH%20homeostasis%20n.pdf
DOI : 10.1016/j.semcancer.2017.01.001

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We developed a new granular material (MatIV) to study experimentally landscape evolution in active mountain belt piedmonts. Its composition and related physical properties have been determined using empirical criteria derived from the scaling of deformation, erosion-transport and sedimentation natural processes. MatIV is a water-saturated composite material made up with 4 granular components (silica powder, glass microbeads, plastic powder and graphite) whose physical, mechanical and erosion-related properties were measured with different laboratory tests. Mechanical measurements were made on a modified Hubbert-type direct shear apparatus. Erosion-related properties were determined using an experimental set-up that allows quantifying the erosion/sedimentation budget from tilted relaxation topographies. For MatIV, we also investigated the evolution of mean erosion rates and stream power erosion law exponents in 1D as a function of slope.;Our results indicate that MatIV satisfies most of the defined criteria. It deforms brittlely according to the linear Mohr-Coulomb failure criterion and localizes deformation along discrete faults. Its erosion pattern is characterized by realistic hillslope and channelized processes (slope diffusion, mass wasting, channel incision). During transport, eroded particles are sorted depending on their density and shape, which results in stratified alluvial deposits displaying lateral fades variations. To evaluate the degree of similitude between model and nature, we used a new experimental device that combines accretionary wedge deformation mechanisms and surface runoff erosion processes. Results indicate that MatIV succeeded in producing detailed morphological and sedi-mentological features (drainage basin, channel network, terrace, syntectonic alluvial fan). Geometric, kinematic and dynamic similarity criteria have been investigated to compare precisely model to nature. Although scaling is incomplete, it yields particularly informative orders of magnitude. With all these characteristics, MatIV appears as a very promising material to investigate experimentally a wide range of scientific questions dealing with relief dynamics and interactions between tectonics, erosion and sedimentation processes.
ISSN: 0040-1951

hal-00669904
https://hal.archives-ouvertes.fr/hal-00669904
DOI : 10.1016/j.tecto.2011.09.029

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Radial trends of vibrational properties, including the specific dynamic modulus (E'/r) and damping coefficient (tand), were investigated for 3 tropical rainforest hardwood species, Simarouba amara, Carapa procera and Symphonia globulifera by free-free flexural vibration test. The microfibril angle (MFA) was estimated through X-Ray diffraction. Consistent patterns of radial variations were observed for all studied properties. E'/r was found to decrease from pith to bark, which is strongly related to the increasing pith-bark trend of MFA. The variation of tand along the radius can be partly explained by MFA, and partly by the gradient of extractives due to heartwood formation. The coupling effect of MFA and extractives could be separated through the analysis of log(tand) - log(E'/r) diagram. For the studied species, the extractive content putatively associated to heartwood formation generally tends to decrease the wood damping coefficient. However, this weakening effect of extractives was not observed for inner part of the heartwood, suggesting the mechanical action of extractives was reduced during their chemical ageing.
ISSN: 1435-0211

hal-00797055
https://hal.archives-ouvertes.fr/hal-00797055
https://hal.archives-ouvertes.fr/hal-00797055/document
https://hal.archives-ouvertes.fr/hal-00797055/file/Radial_variations_vibrational_Zhang_al.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
We consider a second-order differential system with Hessian-driven damping . An interesting property of this system is that, after introduction of an auxiliary variable y , it can be equivalently written as a first-order system in time and space. This allows us to extend the analysis to the case of a convex lower semicontinuous potential and so to introduce constraints in the model. When considering the indicator function of a closed convex set, the subdifferential operator takes account of the contact forces. In this setting, by playing with the geometrical damping parameter, we can describe nonelastic shock laws with restitution coefficient. Taking advantage of the infinite dimensional framework, we introduce a nonlinear hyperbolic PDE describing a damped oscillating system with obstacle. The system is dissipative; in the convex case each trajectory weakly converges to a minimizer of the global potential energy function. Exponential stabilization is obtained under strong convexity assumptions.
Differential Equations & Applications

hal-00803214
https://hal.archives-ouvertes.fr/hal-00803214
https://hal.archives-ouvertes.fr/hal-00803214/document
https://hal.archives-ouvertes.fr/hal-00803214/file/Attouch-Mainge-Redont-30August2011.pdf

Éditeur(s) : HAL CCSD American Physical Society
Résumé : International audience
This is the second of two papers investigating the mechanical response of cemented granular materials by means of contact dynamics simulations. In this paper, a two-dimensional polydisperse sample with high void ratio is sheared in a load-controlled simple shear numerical device until the stress state of the sample reaches the yield stress. We first study the stress transmission properties of the granular material in terms of the fabric of different subsets of contacts characterized by the magnitude of their normal forces. This analysis highlights the existence of a peculiar force carrying structure in the cemented material, which is reminiscent of the bimodal stress transmission reported for cohesionless granular media. Then, the evolution of contact forces and torques is investigated trying to identify the micromechanical conditions that trigger macroscopic yielding. It is shown that global failure can be associated to the apparition of a group of particles whose contacts fulfill at least one of the local rupture conditions. In particular, these particles form a large region that percolates through the sample at the moment of failure, evidencing the relationship between macroscopic yielding and the emergence of large-scale correlations in the system.
ISSN: 1539-3755

hal-00523451
https://hal.archives-ouvertes.fr/hal-00523451
DOI : 10.1103/PhysRevE.82.011304

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Studies on tree biomechanical design usually focus on stem stiffness, resistance to breakage or uprooting, and elastic stability. Here we consider another biomechanical constraint related to the interaction between growth and gravity. Because stems are slender structures and are never perfectly symmetric, the increase in tree mass always causes bending movements. Given the current mechanical design of trees, integration of these movements over time would ultimately lead to a weeping habit unless some gravitropic correction occurs. This correction is achieved by asymmetric internal forces induced during the maturation of new wood. The long-term stability of a growing stem therefore depends on how the gravitropic correction that is generated by diameter growth balances the disturbance due to increasing self weight. General mechanical formulations based on beam theory are proposed to model these phenomena. The rates of disturbance and correction associated with a growth increment are deduced and expressed as a function of elementary traits of stem morphology, cross-section anatomy and wood properties. Evaluation of these traits using previously published data shows that the balance between the correction and the disturbance strongly depends on the efficiency of the gravitropic correction, which depends on the asymmetry of wood maturation strain, eccentric growth, and gradients in wood stiffness. By combining disturbance and correction rates, the gravitropic performance indicates the dynamics of stem bending during growth. It depends on stem biomechanical traits and dimensions. By analyzing dimensional effects, we show that the necessity for gravitropic correction might constrain stem allometric growth in the long-term. This constraint is compared to the requirement for elastic stability, showing that gravitropic performance limits the increase in height of tilted stem and branches. The performance of this function may thus limit the slenderness and lean of stems, and therefore the ability of the tree to capture light in a heterogeneous environment.
ISSN: 0022-5193

hal-00534316
https://hal.archives-ouvertes.fr/hal-00534316
DOI : 10.1016/j.jtbi.2008.10.011

Éditeur(s) : HAL CCSD American Physical Society
Résumé : International audience
We investigate a class of granular materials characterized by the possibility of interlocking between the particles. The interlocking is modeled by its effect through rolling resistance depending on relative rotation and normal force at the contact points and involving a single parameter analogous to the sliding friction coefficient. The model, which is introduced in the framework of the contact dynamics, method, is applied to simulate the simple shear of a large granular sample. We present a detailed analysis regarding the influence of rolling and sliding friction parameters on the macroscopic response in terms of shear strength, fabric properties, and force transmission. Interestingly, two distinct regimes can be distinguished in which the steady-state shear strength is controlled by either rolling resistance or sliding friction. The relative contributions of rolling and sliding contacts to the shear strength are consistent with the same two regimes. Interlocking strongly affects the force network by enhancing the arching effect and thus increasing the relative importance of weak contact forces and torques, which is reflected in a decreasing power-law probability distribution of the contact forces and torques below the mean. Due to the combined effect of friction and interlocking, the force-carrying backbone takes an increasingly columnar aspect involving a low fraction of particles. Our data suggest that the nature of the weak contact network is strongly affected by the formation of these columns of particles which do not need to be propped laterally. In particular, in the limit of high rolling resistance and sliding friction, the role of the weak network of contacts is no longer to prop the force chains, but, like the strong contact network, to actively sustain the deviatoric load imposed on the system.
ISSN: 1539-3755

hal-00412020
https://hal.archives-ouvertes.fr/hal-00412020
DOI : 10.1103/PhysRevE.78.021301

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : We designed a thermo-mechanical numerical model for fast-spreading mid-ocean ridge with variable viscosity, hydrothermal cooling, latent heat release, sheeted dyke layer, and variable melt intrusion possibilities. The model allows for modulating several accretion possibilities such as the "gabbro glacier" (G), the "sheeted sills" (S) or the "mixed shallow and MTZ lenses" (M). These three crustal accretion modes have been explored assuming viscosity contrasts of 2 to 3 orders of magnitude between strong and weak phases and various hydrothermal cooling conditions depending on the cracking temperatures value. Mass conservation (stream-function), momentum (vorticity) and temperature equations are solved in 2-D cartesian geometry using 2-D, alternate direction, implicit and semi-implicit finite-difference scheme. In a first step, an Eulerian approach is used solving iteratively the motion and temperature equations until reaching steady states. With this procedure, the temperature patterns and motions that are obtained for the various crustal intrusion modes and hydrothermal cooling hypotheses display significant differences near the mid-ocean ridge axis. In a second step, a Lagrangian approach is used, recording the thermal histories and cooling rates of tracers travelling from the ridge axis to their final emplacements in the crust far from the mid-ocean ridge axis. The results show that the tracer's thermal histories are depending on the temperature patterns and the crustal accretion modes near the mid-ocean ridge axis. The instantaneous cooling rates obtained from these thermal histories betray these discrepancies and might therefore be used to characterize the crustal accretion mode at the ridge axis. These deciphering effects are even more pronounced if we consider the average cooling rates occurring over a prescribed temperature range. Two situations were tested at 1275-1125 °C and 1050-850 °C. The first temperature range covers mainly the crystallization range that is characteristic of the high temperature areas in the model (i.e. the near-mid-oceanic-ridge axis). The second temperature range corresponds to areas in the model where the motion is mainly laminar and the vertical temperature profiles are closer to conductive. Thus, this situation results in less discriminating efficiency among the crustal accretion modes since the thermal and dynamic properties that are described are common to all the crustal accretion modes far from the ridge axis. The results show that numerical modeling of thermo-mechanical properties of the lower crusts may bring useful information to characterize the ridge accretion structure, hydrothermal cooling and thermal state at the fast-spreading ridges and may open discussions with petrological cooling rate results.
ISSN: 1991-959X

hal-00907012
https://hal.archives-ouvertes.fr/hal-00907012
DOI : 10.5194/gmd-6-1659-2013

Éditeur(s) : HAL CCSD
Résumé : International audience
Some morphological and biochemical taxonomic markers are also affecting factors of dynamic mechanical properties of wood. Thus, could these properties reflect the classification/phylogeny of taxa? This work is a first insight into this question. It relied on the gathering (through experimental campaigns and exhaustive literature review) of a large database on the viscoelastic (i.e. including damping) vibrational properties of 445 woody species. relationship between damping was confirmed at a wide interspecific scale, but described no more than 40% of not in a way that could be easily related to the phylogenetic tree. Damping was a bit more -Papilionoideae and, to a lesser extent, Lauraceae, Cupressaceae and Moraceae) damping than average, independently While for some other families no clear characteristics could be observed at least with the present number of represented species. In the future, increasing the amount of data and compiling anatomical and chemical markers / affecting factors will allow further analysis at sub-family levels, and a better understanding of this wide topic.
6th Plant Biomechanics Conference PBM09
Cayenne, French Guiana

hal-00808398
https://hal.archives-ouvertes.fr/hal-00808398
https://hal.archives-ouvertes.fr/hal-00808398/document
https://hal.archives-ouvertes.fr/hal-00808398/file/Mechanical_damping_wood_Bremaud_al.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Secondary migration is defined as the movement of hydrocarbons through relatively permeable rocks from source to trap: a two-phase flow within a porous medium. Depending on the geometry and capillary pressure distributions of carrier beds, secondary migration has both vertical and lateral components. The present paper focuses on that part of the migration where the movement is mainly vertical. Its objective is to propose a description of the dynamics governing the vertical part of secondary migration based on the main physical aspects of two-phase flow in a homogeneous porous medium. The study is illustrated by laboratory observations performed in a vertical, 2-D Hele-Shaw cell filled with a transparent porous medium where the flow of dyed oil invading a wetting fluid is visually observed. These observations help us to understand the effect of buoyant, capillary and viscous forces on the resulting flow, the relative importance of which is characterized by non-dimensional numbers. Extrapolating these observations to natural media, it is proposed that vertical secondary migration can be described as a percolation of disconnected and vertically-elongated stringers. These stringers do not move continuously but as a succession of snap-off and re-feeding events which result in a jerky upward movement. Using parameters characterizing the physical properties of the fluid and of the porous medium, the geometry and the dynamic behavior of the stringers are estimated. The width of stringers occurring during secondary migration in geological media is centimetric and their vertical size ranges from several centimeters to a few meters. An upper limit of the mean upward velocity of stringers is proposed, as well as an estimate of their spatial density and of the minimum, average horizontal distance (decametric) between two stringers. The stringers are sparsely distributed, resulting in a low average oil loss and a high efficiency of the vertical migration process.
ISSN: 0264-8172

hal-00831370
https://hal.archives-ouvertes.fr/hal-00831370
https://hal.archives-ouvertes.fr/hal-00831370/document
https://hal.archives-ouvertes.fr/hal-00831370/file/pekins-V-edited.pdf
DOI : 10.1016/j.marpetgeo.2013.04.020

Éditeur(s) : HAL CCSD
Résumé : International audience
In orogens, shortening is mainly accommodated by thrusts, which constitute preferential zones for fluid–rock interactions. Fluid flow, mass transfer, and mineralogical reactions taking place along thrusts have been intensely investigated, especially in sedimentary basins for petroleum and uranium research. This study combines petrological investigations, mineralogical quantifications, and geochemical characterizations with a wide range of analytical tools with the aim of defining the fluid properties (nature, origin, temperature, and redox) and fluid–host rock interactions (mass transfers, recrystallization mechanisms, and newly formed synkinematic mineralization) in the Pic-de-Port-Vieux thrust fault zone (Pyrenees, Spain). We demonstrate that two geochemically contrasted rocks have been transformed by fluid flow under low-grade metamorphism conditions during thrusting. The hanging-wall Triassic red pelite was locally bleached, while the footwall Cretaceous dolomitic limestone was mylonitized. The results suggest that thrusting was accompanied by a dynamic calcite recrystallization in the dolomitic limestone as well as by leaching of iron via destabilization of iron oxides and phyllosilicate crystallization in the pelite. Geochemical and physical changes highlighted in this study have strong implications on the understanding of the thrust behavior (tectonic and hydraulic), and improve our knowledge of fluid–rock interactions in open fluid systems in the crust.
Contributions to Mineralogy and Petrology

hal-01575548
https://hal-univ-fcomte.archives-ouvertes.fr/hal-01575548
DOI : 10.1007/s00410-017-1394-5