Résumé : A new strain of L. stylirostris was introduced in New Caledonia. Quarantine facilities were set up inland using RAS and artificial seawater. After 5 months of rearing, all the 16 initial families were still represented with a 50% average survival. Three samplings for known pathogens were made during that period, all of them negative. Half the animals were taken to outdoor ponds for rearing to reproduction size when the rest was used to test different arrangements for a biosecure rearing until reproduction. Numerous spawnings and nauplii were obtained but larval rearings could not be completed. Different options are considered for the set up of a biosecure facility allowing the rearing and the breeding of pathogen free strains of shrimp.
Afin de disposer d’une plus forte diversité génétique exploitable, des producteurs calédoniens ont, en relation avec l’Ifremer, récemment introduit d’Hawaii une autre souche de crevette de l’espèce Litopenaeus stylirostris, domestiquée et garantie exempte de pathogènes. Malgré cette garantie sanitaire, les crevettes ont été maintenues en observation dans une quarantaine tertiaire pendant cinq mois avant la sortie et l’élevage d’une moitié de l’effectif en bassins terre extérieurs. L’autre moitié a été conservée dans les installations de quarantaine comme stock de secours au cas où un problème affecterait les crevettes élevées à l’extérieur. Les installations de quarantaine ont été progressivement transformées, tout en continuant les élevages, afin de réaliser un prototype de conservatoire biosécurisé. Les crevettes ont été élevées jusqu’à la taille de géniteurs en utilisant de l’eau de mer artificielle puis de l’eau de mer naturelle traitée au chlore. Des essais de reproduction et d’élevage larvaire ont été menés et de nombreuses pontes fécondées ont été obtenues mais les élevages larvaires, à une exception, n’ont pas dépassé le stade Zoé 3. Les analyses par PCR réalisées sur les crevettes du conservatoire ont montré que les mesures et précautions sanitaires qui avaient été prises avaient préservé le statut sanitaire “sans pathogènes” initial. Cette expérience a permis de mieux cerner les problèmes qui pouvaient se poser pour la mise en place et le fonctionnement d’installations biosécurisées utilisant des circuits fermés. Ces enseignements ont servi à répertorier les principales contraintes envisageables pour la réalisation d’un futur conservatoire crevette qui viendrait conforter et sécuriser les souches actuellement disponibles en Nouvelle-Calédonie. Plusieurs options sont proposées pour les crevettes devant entrer dans le conservatoire (sans quarantaine, quarantaine tertiaire, quarantaine primaire puis secondaire) et pour le type de fonctionnement du conservatoire. Les principaux critères pour le choix du site, l’utilisation de l’eau de mer et son traitement, les systèmes de recirculation sont abordés; et des schémas d’installations de quarantaine et de conservatoire sont proposés.

Droits : 2007 Ifremer
http://archimer.ifremer.fr/doc/00117/22849/20659.pdf
http://archimer.ifremer.fr/doc/00117/22849/

Éditeur(s) : Elsevier Science Bv
Résumé : The breakup of Pangea and onset of growth of the Pacific plate led to several paleoenvironmental feedbacks, which radically affected paleoclimate and ocean chemistry during the Jurassic. Overall, this period was characterized by intense volcanic degassing from large igneous provinces and circum-Panthalassan arcs, new oceanic circulation patterns, and changes in heat and humidity transports affecting continental weathering. Few studies, however, have attempted to unravel the global interactions linking these processes over the long-term. In this paper, we address this question by documenting the global changes in continental drainage and surface oceanic circulation for the whole Jurassic period. For this purpose, we present 53 new neodymium isotope values (εNd(t)) measured on well-dated fossil fish teeth, ichthyosaur bones, phosphatized nodules, phosphatized ooids, and clastic sediments from Europe, western Russia, and North America. Combined with an extensive compilation of published εNd(t) data, our results show that the continental sources of Nd were very heterogeneous across the world. Volcanic inputs from a Jurassic equivalent of the modern Pacific Ring of Fire contributed to radiogenic εNd(t) values (− 4 ε-units) in the Panthalassa Ocean. For the Tethyan Ocean, the average surface seawater signal was less radiogenic in the equatorial region (− 6.3), and gradually lower toward the epicontinental peri-Tethyan (− 7.4), western Russian (− 7.4) and Euro-Boreal seas (− 8.6). Different Nd sources contributed to this disparity, with radiogenic Nd influxes from westward Panthalassan currents or juvenile volcanic arcs in open oceanic domains, and substantial unradiogenic inputs from old Laurasian and Gondwanan shields for the NW Tethyan platforms. Overall, the εNd(t) values of Euro-Boreal, peri-Tethyan, and western Russian waters varied quite similarly through time, in response to regional changes in oceanic circulation, paleoclimate, continental drainage, and volcanism. Three positive shifts in εNd(t) values occurred successively in these epicontinental seas during the Pliensbachian, in the Aalenian-Bathonian interval, and in the mid-Oxfordian. The first and third events are interpreted as regional incursions of warm surface radiogenic currents from low latitudes. The Aalenian-Bathonian shift seems linked to volcanic outbursts in the NW Tethys and/or circulation of deep currents resulting from extensional events in the Hispanic Corridor and reduced influences of boreal currents crossing the Viking Corridor. In contrast, the εNd(t) signals decreased and remained very low (< − 8) during the global warming events of the Toarcian and Late Oxfordian - Early Tithonian intervals. In these greenhouse contexts, a latitudinal expansion of humid belts could have extended the drainage pathways toward boreal Nd sources of Precambrian age and increased the supply of very unradiogenic crustal-derived inputs to seawater. Finally, a brief negative εNd(t) excursion recorded in parallel with regional drops in seawater temperature suggests that southward circulation of cold unradiogenic Arctic waters occurred in the NW Tethys in the Callovian - Early Oxfordian. All these results show that changes in surface oceanic circulation resulting from the Pangean breakup could have regionally impacted the evolution of seawater temperatures in the NW Tethys.
Gondwana Research (1342-937X) (Elsevier Science Bv), 2015-06 , Vol. 27 , N. 4 , P. 1599-1615

Droits : 2014 International Association for Gondwana Research. Published by Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/00179/29015/27443.pdf
DOI:10.1016/j.gr.2014.02.006
http://archimer.ifremer.fr/doc/00179/29015/

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
In the Oman ophiolite crustal section, a contact zone between the gabbro unit and the volcanics and diabase sheeted dikes, called the root zone of the sheeted dike complex, has been recently mapped at a fine scale in a selected area. The Oman ophiolite is derived from a fast spreading ridge which had a melt lens located between the main gabbro unit and the root zone of the sheeted dike complex. With a few exceptions accounted for, this horizon has a fairly constant thickness, similar to 100 m, and a crude internal pseudo-stratigraphy. At the base of the root zone are isotropic ophitic gabbros interpreted as a thermal boundary layer. This layer is transitional between the magmatic system of the melt lens, convecting at 1200 degrees C, and a high-temperature (< 1100 degrees C) hydrothermal system, convecting within the root zone. Above this level, the isotropic gabbros have been, locally, largely molten due to an influx of seawater, at similar to 1100 degrees C, thus generating varitextured ophitic and pegmatitic gabbros. These latter gabbros constitute the upper part of the root zone and are associated with trondjhemitic intrusions as screens in the lower sheeted dikes. Diorites and trondjhemites were also generated by hydrous melting, at temperatures below 1000 degrees C. The whole root zone is a domain of very sharp average thermal gradient (similar to 7 degrees C/m). At the top of the root zone, a new thermal boundary layer, with diabase dikes hydrated in amphibolite facies conditions, separates the preceding high- temperature convective system from the well-known greenschist facies (< 450 degrees C) hydrothermal system operating throughout the sheeted dike complex, up to the seafloor. The isotropic gabbros near the base of the root zone are intruded by protodikes with distinctive microgranular margins and an ophitic center. Protodike swarms are exceptional because, intruding a medium at similar to 1100 degrees C, they are largely destroyed by dike-in-dike intrusions and by hydrous melting. However, they demonstrate that this zone was generated by melt conduits issued from the underlying melt lens. Each dike of the sheeted dike complex is thus fed by one protodike. As this zone has been recently drilled by IODP in the eastern Pacific Ocean, a brief comparison is proposed.
ISSN: 1525-2027

hal-00411331
https://hal.archives-ouvertes.fr/hal-00411331
DOI : 10.1029/2007GC001918

Éditeur(s) : Elsevier Science Bv
Résumé : For many trace elements, continental margins are the location of intense exchange processes between sediment and seawater, which control their distribution in the water column, but have yet to be fully understood. In this study, we have investigated the impact of fluid seepage at cold seeps on the marine cycle of neodymium. We determined dissolved and total dissolvable (TD) concentrations for REE and well-established tracers of fluid seepage (CH4, TDFe, TDMn), and Nd isotopic compositions in seawater samples collected above cold seeps and a reference site (i.e. away from any fluid venting area) from the Niger Delta margin. We also analyzed cold seep authigenic phases and various core-top sediment fractions (pore water, detrital component, easily leachable phases, uncleaned foraminifera) recovered near the hydrocast stations. Methane, TDFe and TDMn concentrations clearly indicate active fluid venting at the studied seeps, with plumes rising up to about 100 m above the seafloor. Depth profiles show pronounced REE enrichments in the non-filtered samples (TD concentrations) within plumes, whereas filtered samples (dissolved concentrations) exhibit slight REE depletion in plumes relative to the overlying water column and display typical seawater REE patterns. These results suggest that the net flux of REE emitted into seawater at cold seeps is controlled by the presence of particulate phases, most probably Fe-Mn oxyhydroxides associated to resuspended sediments. At the reference site, however, our data reveal significant enrichment for dissolved REE in bottom waters, that clearly relates to diffusive benthic fluxes from surface sediments. Neodymium isotopic ratios measured in the water column range from epsilon(Nd) similar to-15.7 to -10.4. Evidence that the epsilon(Nd) values for Antarctic Intermediate waters (AAIW) differed from those reported for the same water mass at open ocean settings shows that sediment/water interactions take place in the Gulf of Guinea. At each site, however, the bottom water epsilon(Nd) signature generally differs from that for cold seep minerals, easily leachable sediment phases, and detrital fractions from local sediments, ruling out the possibility that seepage of methane-rich fluids and sediment dissolution act as a substantial source of dissolved Nd to seawater in the Gulf of Guinea. Taken together, our data hence suggest that co-precipitation of Fe-Mn oxyhydroxide phases in sub-surface sediments leads to quantitative scavenging of dissolved REE at cold seeps, preventing their emission into bottom waters. Most probably, it is likely that diffusion from suboxic surface sediments dominates the exchange processes affecting the marine Nd cycle at the Niger Delta margin. (C) 2011 Elsevier B.V. All rights reserved.
Earth And Planetary Science Letters (0012-821X) (Elsevier Science Bv), 2011-12 , Vol. 312 , N. 3-4 , P. 443-452

Droits : 2011 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00066/17754/15571.pdf
DOI:10.1016/j.epsl.2011.10.008
http://archimer.ifremer.fr/doc/00066/17754/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The behaviour of the four Ra isotopes (measured by gamma spectrometry) and 222Rn (measured with an AlphaGUARD ionisation chamber) has been investigated in NaCl-rich thermal waters of Balaruc-les-Bains on the Mediterranean coast (South of France). This study allows identification of the deep thermal water signature and reveals the influence of seawater or karst water inflows on Ra isotopes and 222Rn. The deep thermal water has 226Ra and 222Rn activities of 840 and 1900 mBq/l, respectively, a (228Ra/226Ra) activity ratio of 0.59, and low (224Ra/228Ra) and (223Ra/226Ra) ratios of 0.67 and 0.025, respectively. Several arguments suggest a dominant role of radioactive decay for short-lived Ra isotopes and Rn during the relatively rapid ascent of thermal water through wide open fractures and drains. The low (223Ra/226Ra) ratio constrains the maximum ascent velocity of thermal water to 8-10 m/h. Seawater inflow into the hydrothermal system results in an enrichment in short-lived Ra isotopes and 222Rn. The high (223Ra/226Ra) ratio (0.23) suggests that 223Ra, 224Ra and 222Rn produced by alpha-recoil in the upper-Jurassic limestone are entrained by seawater percolation through the coastal basement, due to active pumping in one of the near shore production well. This process would be enhanced by a low water/rock ratio (i.e. in a low-porosity, micro-fractured limestone). Mixing of this enriched seawater with thermal water induces barite precipitation with co-precipitation of a large fraction of Ra. Short-lived Ra isotopes may thus be useful tracers of seawater flux towards the continent. Conversely, the inflow and mixing of karst groundwater result in a general dilution of all dissolved elements, only a small enrichment in 224Ra and 223Ra, but a large enrichment in 222Rn (up to 26 Bq/l). The combination of Ra isotopes and 222Rn data provides a good way to trace the dynamics of different water masses along coastal areas.
ISSN: 0016-7037

hal-00795512
https://hal.archives-ouvertes.fr/hal-00795512
DOI : 10.1016/j.gca.2012.09.010

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Roussillon sedimentary Basin (South France) is a complex multi-layered aquifer, close to the Mediterranean Sea facing seasonally increases of water abstraction and salinization issues. We report geochemical and isotopic vertical variability in this aquifer using groundwater sampled with a Westbay System® at two coastal monitoring sites: Barcarès and Canet. The Westbay sampling allows pointing out and explaining the variation of water quality along vertical profiles, both in productive layers and in the less permeable ones where most of the chemical processes are susceptible to take place.The aquifer layers are not equally impacted by salinization, with electrical conductivity ranging from 460 to 43,000 μS·cm− 1. The δ2H–δ18O signatures show mixing between seawater and freshwater components with long water residence time as evidenced by the lack of contribution from modern water using 3H, 14C and CFCs/SF6. S(SO4) isotopes also evidence seawater contribution but some signatures can be related to oxidation of pyrite and/or organically bounded S. In the upper layers 87Sr/86Sr ratios are close to that of seawater and then increase with depth, reflecting water–rock interaction with argillaceous formations while punctual low values reflect interaction with carbonate. Boron isotopes highlight secondary processes such as adsorption/desorption onto clays in addition to mixings. At the Barcarès site (120 m deep), the high salinity in some layers appear to be related neither to present day seawater intrusion, nor to Salses-Leucate lagoonwater intrusion. Groundwater chemical composition thus highlights binary mixing between fresh groundwater and inherited salty water together with cation exchange processes, water–rock interactions and, locally, sedimentary organic matter mineralisation probably enhanced by pyrite oxidation.Finally, combining the results of this study and those of Caballero and Ladouche (2015), we discuss the possible future evolution of this aquifer system under global change, as well as the potential management strategies needed to preserve quantitatively and qualitatively this water resource.
ISSN: 0048-9697

hal-01685219
https://hal-brgm.archives-ouvertes.fr/hal-01685219
DOI : 10.1016/j.scitotenv.2016.05.016

Éditeur(s) : Université de Bretagne Occidentale
Résumé : This activity report entitled (“Chemical contamination of the marine environment: from measurement to risk assessment”) summarizes the main stages my career at Ifremer from November 1975 to june 2013. The first chapter deals with the seawater chlorination and chlorinated waters released into the sea, the identification and the conditions of the formation of various by-product of these processes. The second chapter concerns PCBs, their nature, their chemical analysis in environmental matrices. PCBs are considered as the best examples of persistant and bioaccumulable compounds and therefore, in all this report they are flagship contaminants to which other groups of studied substances are compared. The third chapter refers to studies performed within marine pollution monitoring programme RNO (Réseau National d’Observation de la qualité de l’environnement marin - National observation network on the quality of the marine environnment) and well as other more limited studies like a first assessement on the presence of dioxins and dioxin-like PCBs in the French coastal marine environment and last, on the use of zebra mussel (Dresseinia polymorpha) as sentinelle species of the chemical contamination in the Seine estuary. The next two chapters are about bioaccumulation and about the distribution of organic contaminants (PCBs, dioxins, PAHs, PBDEs) in marine organisms and in marine foodwebs. These studies aim at a better knowledge of the presence and fate of these compounds in fish and marine organisms eitheir in an environmental perspective (chapter IV) or in order to contribute to the assessment of their health impact, or more precisely to estimate therelative part of fish and seafood to the human exposure to chemical residues (chapter V). To conclude, the chapter VI concerns the PCB and dioxin fingerprints in the various studied marine matrices ; analytical and environmental interpretations of the observed differences are suggested as well as possible applications.
Ce bilan d’activité intitulé « Contamination chimique du milieu marin : de la mesure à l’évaluation des risques » retrace les étapes essentielles de mon parcours à Ifremer entre novembre 1975 et juin 2013. Le premier chapitre traite de la chloration dans l’eau de mer et les rejets chlorés en mer, l’identification des sous-produits formés lors de ces traitements, les conditions de leur formation. Le second chapitre concerne la nature des PCB et leur analyse dans les matrices environnementales. Les PCB considérés comme les meilleurs exemples de composés persistants bioaccumulables constituent les « contaminants phares » de l’ensemble de ce travail et c’est par rapport aux PCB que sont comparés et évalués les autres groupes de contaminants étudiés. Le troisième chapitre se rapporte aux travaux réalisés dans le cadre de la surveillance RNO (Réseau National d’Observation de la qualité de l’environnement marin) ainsi que dans des études ponctuelles comme un premier inventaire sur les niveaux de présence des dioxines (PCDD et PCDF) dans l’environnement marin littoral ou sur l’utilisation de la moule zébrée (Dresseinia polymorpha) comme espèce indicatrice de la contamination de l’estuaire de la Seine. Les deux chapitres suivants sont consacrés aux travaux sur la bioaccumulation et aux contaminants organiques (PCB, dioxines, HAP, PBDE) dans les organismes et les réseaux trophiques marins soit dans une perspective environnementale sur le devenir des contaminants dans le vivant (chapitre IV) soit dans le cadre de l’évaluation des risques sanitaires ou, plus précisément, de l’estimation de la contribution de la consommation des produits de la mer à l’exposition de l’homme aux résidus chimiques (chapitre V). Pour terminer, le chapitre VI concerne les empreintes de PCB et de dioxines dans les différentes matrices étudiées ; une interprétation analytique et environnementale des différences observées est proposée ainsi que de possibles applications.

Droits : 2013 UBO
http://archimer.ifremer.fr/doc/00168/27946/26237.pdf
http://archimer.ifremer.fr/doc/00168/27946/

Éditeur(s) : Elsevier
Résumé : Because Vibrio aestuarianus is known to cause serious infections in Pacific oyster Crassostrea gigas, a real-time PCR assay was developed targeting the dnaJ gene of this bacterium. Only V. aestuarianus strains isolated from C. gigas mortality events in different geographic areas and the reference strain tested positive, whereas no amplification products was obtained with type strains belonging to 23 other species of Vibrio. Sensitivity and reproducibility of the method were assessed using either seawater or oyster homogenate samples spiked with one V aestuarianus strain. All these samples were stored at -20 degrees C in order to mimic retrospective or grouped natural sample analysis without quantification bias due to prolonged freezing. Analysis of standard curves revealed excellent correlation values between light microscopy cell enumerations and PCR Threshold Cycle (Ct) values, and acceptable PCR reaction efficiencies for all type of samples. Quantification curves of both sample types were equivalent, with a detection level as low as 1.6 V. aestuarianus cells in the PCR reaction tube, corresponding to 1.6.10(2) cells ml(-1) and 1.6.10(2) cells mg(-1) in seawater and entire oyster samples, respectively, taking into account the dilution factor used for appropriate template DNA preparation. Comparison of PCR assay reproducibility according to the complexity of samples revealed that seawater samples gave more reproducible quantification measures than samples from oyster homogenate, with precision of measured Ct values inferior to 0.4 and 0.6 respectively at 99% confidence. Use of the real-time PCR assay allowed us to monitor V. aestuarianus load in oysters naturally infected with this pathogen. Furthermore, we were able to detect V aestuarianus in samples of seawater in which oysters had been reared and in algal cultures used for feeding oysters. Because of the rapidity and reliability of the real-time PCR assay method used in this study, just a few hours are needed compared with the two days required using the classic culture method, this technique will be particularly valuable in mollusc pathology laboratories, for monitoring the source and course of infections by V. aestuarianus in pathogenesis and epidemiologic studies, as well as for designing appropriate prophylactic control measures. (C) 2009 Elsevier B.V. All rights reserved.
Journal of Microbiological Methods (0167-7012) (Elsevier), 2009-05 , Vol. 77 , N. 2 , P. 191-197

Droits : 2009 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2009/publication-6447.pdf
DOI:10.1016/j.mimet.2009.01.021
http://archimer.ifremer.fr/doc/00000/6447/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Factors controlling ocean acidification and its temporal variations were studied over the 1995–2011 period at the Dyfamed site at 10 m depth, in the North Mediterranean Sea. The results indicated a mean annual decrease of 0.003 ± 0.001 pH units on the seawater scale. The seasonal variability was characterized by a pH decrease during springtime and a strong pH increase in late fall. Anthropogenic CO2 (CANT) absorption by the ocean was the key driver of seawater acidification in this region, accounting for about 70% of the observed drop in pH, followed by water temperature (about 30%). The total inorganic carbon (CT) data showed a CT increase of 30.0 ± 1.0 μmol kg−1 per decade. This decadal increase is mainly due to the CANT penetration (43.2 μmol kg−1 per decade) in surface waters, which is mitigated for by relatively small opposing changes in CT due to physical and biological processes.
ISSN: 0141-1136

hal-01286093
https://hal-univ-perp.archives-ouvertes.fr/hal-01286093
DOI : 10.1016/j.marenvres.2016.02.016

Éditeur(s) : Elsevier
Résumé : To improve the knowledge of the survival of enteric viruses in a marine environment, the influence of physico-chemical parameters (temperature, UV, salinity) on the survival of infectious poliovirus 1 and hepatitis A Virus (HAV) in seawater was first studied, the influence of suspended solids (SS) on poliovirus adsorption and survival in seawater was then evaluated and the detection of rotavirus genome in environmental samples (shellfish, river water, treated wastewater) was finally investigated. The results show that temperature has a major impact on virus survival in seawater as the time necessary to inactivate 90 % of the virus (T-90) is 671 days at 4 degrees C and only 25 days at 25 degrees C. Ultraviolet light (42 mW s cm(-2)) rapidly inactivates viruses but HAV is more resistant (T-90 = 2.6 min) than the poliovirus 1 (T-90 = 1.3 min). By contrast, seawater salinity has no effect on virus survival. In presence of SS, 90 % to 99.9 % of the viruses were adsorbed. This adsorption does not provide any protection for viruses with low SS concentrations (3 and 15 mg L-1) but a slight increase in virus survival was observed with a high SS concentration (500 mg L-1). Finally environmental sample analysis indicated that 20 % shellfish, about 40 % river water and 40 % treated wastewater tested positive for the rotavirus genome.
Ce travail a pour but de mieux comprendre le devenir des virus en milieu marin. Dans ce cadre, l'influence de certains paramètres physicochimiques (température, UV et salinité) sur le pouvoir infectieux du poliovirus 1 et du virus de l'hépatite A (VHA) en eau de mer a été évalué, puis l'adsorption du poliovirus 1 sur les matières en suspension (MES) a été étudié, ainsi que les conséquences sur le pouvoir infectieux du virus et enfin le génome des rotavirus a été recherché en milieu naturel (eaux et coquillages). Les résultats montrent que la température est un paramètre important pour la survie des virus puisque le temps nécessaire à inactiver 90 % des virus (T90) en eau de mer est de 671 j à 4 °C alors qu'il est seulement de 25 j à 25 °C. Le rayonnement ultraviolet (42 mW s cm−2) testé en pilote expérimental, permet d'obtenir une inactivation rapide du poliovirus 1 (T90 = 1,3 min). Le VHA est plus résistant avec un T90 = 2,6 min. En revanche la salinité de l'eau de mer n'a pas d'influence sur la survie des virus. En ce qui concerne l'influence des MES, les résultats montrent qu'en présence de 3, 15 et 500 mg L−1 de Na-montmorillonite la majorité des virus est adsorbée (90 à 99,9 %). Cet état adsorbé ne procure aucune protection aux virus pour les faibles concentrations de MES (3 et 15 mg L−1) alors qu'une augmentation significative de survie est observée pour les fortes concentrations (500 mg L−1). Enfin, l'analyse d'échantillon de l'environnement a montré que 20 % des fruits de mer, environ 40 % des eaux de rivière et environ 40 % des eaux usées traitées testées contenaient du génome de rotavirus.
Oceanologica Acta (0399-1784) (Elsevier), 1998-11 , Vol. 21 , N. 6 , P. 983-992

Droits : 1998 Ifremer / CNRS / IRD - Published by Elsevier SAS
http://archimer.ifremer.fr/doc/1998/publication-846.pdf
DOI:10.1016/S0399-1784(99)80020-6
http://archimer.ifremer.fr/doc/00000/846/

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
The Oman ophiolite is regarded as derived from a fast spreading oceanic ridge. As in its present-day marine analogs, expectedly, the gabbro unit crystallized in a large magma chamber underneath a small melt lens. In ophiolites, this melt lens is reduced to a horizon mapped in the field, where the floor and the roof of the melt lens joined. The magmatic activity of the former melt lens has been studied in gabbros located below the melt lens horizon. Beneath a stable melt lens, gabbros subside and drift through the steep walls of the magma chamber as steeply foliated gabbros. In contrast, in unstable melt lenses more specifically considered here, flat-lying gabbros are exposed beneath the lens. These gabbros were settling on the floor while the melt lens was retreating. Their strong magmatic foliations and lineations point to a dynamic deposition on the floor, and lineation trends record the structure of convection rolls within the lens. Time constraints suggest a similar to 100 year periodicity of melt recharge by short and powerful melt pulses followed by a shorter time of convection activity after recharge and a longer period of static magma settling, as recently proposed for the East Pacific Rise. At each new melt pulse, the lens nearly doubles its volume by surface expansion, within a short time lapse, before slowly and progressively retreating to feed crustal accretion. Large horizontal surface inflation of the lens better explains the seawater hydration of the accreting crust than melt lens vertical motion through the lid.
ISSN: 0148-0227

hal-00617452
https://hal.archives-ouvertes.fr/hal-00617452
DOI : 10.1029/2010JB007934

Éditeur(s) : Elsevier Sci Ltd
Résumé : The aim of this study is to establish a baseline for poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) lifetime prediction in a marine environment, by means of mechanical and physico-chemical characterization of specimens immersed in continuously renewed and filtered natural seawater in the laboratory at different temperatures (4, 25 and 40°C). Samples were also aged at sea in Lorient harbour in order to compare laboratory and natural degradation mechanisms and kinetics. Due to its morphology, hydrolysis of PHBV in natural seawater is quite slow, and samples were observed to undergo preferentially an enzymatic surface degradation. Increasing the aging temperature in the laboratory promotes the water uptake and causes hydrolysis. As two degradation mechanisms occur in parallel, the choice of test conditions is critical, and the lifetime of PHBV in a marine environment is difficult to predict accurately.
Polymer Degradation And Stability (0141-3910) (Elsevier Sci Ltd), 2014-07 , Vol. 105 , P. 237-247

Droits : 2014 Elsevier Ltd. All rights reserved.
http://archimer.ifremer.fr/doc/00188/29972/28425.pdf
DOI:10.1016/j.polymdegradstab.2014.04.026
http://archimer.ifremer.fr/doc/00188/29972/

Éditeur(s) : HAL CCSD
Résumé : During the course of their life cycle organisms are exposed to natural environment variations capable of inducing physiological, morphological and behaviour changes, thus a phenotypic plasticity. Phenotypic plasticity is the ability of a genotype to generate a new phenotype following exogeneous or endogeneous stress. Here, we investigated the phenotypic plasticity of the non-calcifying symbiotic cnidarian Anemonia viridis at multiple levels of structural complexity, in vivo and in vitro. In vivo, we determined the mechanisms behind the phenotypic plasticity under expected future climate change (i.e. ocean acidification and ocean warming). Our results show physiological changes in the inorganic carbon use of the sea anemone A. viridis exposed to high pCO2 during a long-term stress in natura or a short-term stress in controlled conditions. We then observed an equivalent decrease in carbonic anhydrase activity, a key enzyme of cnidarian carbon concentrating mechanisms. Also, we demonstrated that an increase in seawater temperature modified the response observed during a high pCO2 scenario. In vitro, we established a viable primary cell culture from regenerating tentacles of A. viridis. We determined the gastrodermal tissue origin of the cultivated cells and validated the use of this new tool to the in vitro study of stress response at the cellular level. The set-up of this powerful in vitro tool will open a multitude of perspectives for the study of cellular responses to exogeneous stress (as global change perturbations) and to endogeneous stress (as the symbiosis constraints experienced by symbiotic cnidarians)
Durant leur cycle de vie, les organismes sont exposés à des variations environnementales capables d'induire des changements physiologiques, morphologiques et comportementaux, résultant d’une plasticité phénotypique. La plasticité phénotypique est la capacité d'un génotype à générer un nouveau phénotype suite à un stress. Ici, nous avons étudié la plasticité phénotypique d’un Cnidaire symbiotique et non-calcifiant, l’anémone de mer Anemonia viridis, à de multiples niveaux de complexité structurale, in vivo et in vitro. In vivo, nous avons identifié les mécanismes sous-jacents de la plasticité phénotypique potentiellement induits par les futurs changements climatiques (acidification et réchauffement des océans). Nos résultats montrent des modifications dans l'utilisation du carbone inorganique par A. viridis exposée à une forte pCO2 lors d’un stress chronique in natura ou lors d’un stress court en conditions contrôlées. Nous avons ainsi observé une diminution des activités anhydrase carbonique, une enzyme clé des mécanismes de concentration du carbone chez les Cnidaires. Nous avons aussi démontré que l'augmentation concomittante de la température modifie la réponse observée lors d'une élévation seule de la pCO2. In vitro, nous avons établi une culture de cellules primaires viables issue de tentacules d’A. viridis en régénération. Nous avons déterminé l'origine gastrodermale des cellules cultivées et validé l'utilisation de ce nouvel outil pour l'étude de la réponse au stress au niveau cellulaire. Ce nouvel outil ouvre une multitude de perspectives pour l'étude des réponses cellulaires aux stress exogènes (changement climatique) et endogènes (contraintes dues à la symbiose)
https://tel.archives-ouvertes.fr/tel-01674220

Droits : info:eu-repo/semantics/OpenAccess
NNT : 2016AZUR4136
tel-01674220
https://tel.archives-ouvertes.fr/tel-01674220
https://tel.archives-ouvertes.fr/tel-01674220/document
https://tel.archives-ouvertes.fr/tel-01674220/file/2016AZUR4136.pdf

Éditeur(s) : HAL CCSD Annual Reviews
Résumé : International audience
The record of the continental lithosphere is patchy and incomplete; no known rock is older than 4.02 Ga, and less than 5% of the rocks preserved are older than 3 Ga. In addition, there is no recognizable mantle lithosphere from before 3 Ga. We infer that there was lithosphere before 3 Ga and that ∼3 Ga marks the stabilization of blocks of continental lithosphere that have since survived. This was linked to plate tectonics emerging as the dominant tectonic regime in response to thermal cooling, the development of a more rigid lithosphere, and the recycling of water, which may in turn have facilitated plate tectonics. A number of models, using different approaches, suggest that at 3 Ga the volume of continental crust was ∼70% of its present-day volume and that this may be a minimum value. The continental crust before 3 Ga was on average more mafic than that generated subsequently, and this pre-3 Ga mafic new crust had fractionated Lu/Hf and Sm/Nd ratios as inferred for the sources of tonalite-trondhjemite-granodiorite and later granites. The more intermediate composition of new crust generated since 3 Ga is indicated by its higher Rb/Sr ratios. This change in composition was associated with an increase in crustal thickness, which resulted in more emergent crust available for weathering and erosion. This in turn led to an increase in the Sr isotope ratios of seawater and in the drawdown of CO2. Since 3 Ga, the preserved record of the continental crust is marked by global cycles of peaks and troughs of U-Pb crystallization ages, with the peaks of ages appearing to match periods of supercontinent assembly. There is increasing evidence that the peaks of ages represent enhanced preservation of magmatic rocks in periods leading up to and including continental collision in the assembly of supercontinents. These are times of increased crustal growth because more of the crust that is generated is retained within the crust. The rates of generation of continental crust and mantle lithosphere may have remained relatively constant at least since 3 Ga, yet the rates of destruction of continental crust have changed with time. Only relatively small volumes of rock are preserved from before 3 Ga, and so it remains difficult to establish which of these are representative of global processes and the extent to which the rock record before 3 Ga is distorted by particular biases.
ISSN: 0084-6597

hal-01622692
https://hal.archives-ouvertes.fr/hal-01622692
DOI : 10.1146/annurev-earth-063016-020525

Éditeur(s) : Edp Sciences S A
Résumé : Sperm characteristics of scallops have not been well described in the scientific literature. The effects of sperm release technique (thermal shock versus serotonin injection), of sperm collection technique (testis sampling versus serotonin injection), of sperm sampling location along the genital tract, of in vitro sperm maturation, and of time post activation on scallop sperm characteristics were assessed in the present work. Whatever sperm release technique used, no significant differences were observed regarding the percentage of motile spermatozoa and the velocity of the average path (YAP). Compared to testicular sperm, a higher percentage of motile spermatozoa, YAP and intracellular adenosine triphosphate (ATP) content were observed for sperm shed after serotonin injection. From the distal part of testes up to the gonopore, an increase of the percentage of motile spermatozoa and YAP was assessed, suggesting a sperm 'maturation process' along the genital ducts. A higher increase in the percentage of motile sperm was recorded during a 5 mm incubation of testicular sperm in seawater containing 2 mM serotonin and seawater containing 10 mM caffein compared to seawater (control). In addition, a higher YAP was assessed, incubating testicular sperm in caffein, compared to control or serotonin. Then, the percentage of motile spermatozoa, YAP and intracellular ATP content exhibited a progressive reduction during the 10 h swimming period. Mean values of the percentage of motile spermatozoa, YAP, sperm track linearity (LIN) and intracellular ATP content recorded at the beginning of the movement period for sperm samples collected after intragonadal serotonin injection, were 82 +/- 7%, 162 +/- 15 mu m s(-1), 0.33 +/- 0.12 and 212 +/- 133 nmol x 10(-9) spermatozoa (n = 9 males), respectively. The present study confirms the existence of a sperm "maturation process" along scallop genital ducts. In addition, the cessation of scallop sperm movement can be explained by the exhaustion of ATP content at the end of the movement phase.
Aquatic Living Resources (0990-7440) (Edp Sciences S A), 2013-07 , Vol. 26 , N. 3 , P. 215-220

Droits : EDP Sciences, IFREMER, IRD 2013
http://archimer.ifremer.fr/doc/00157/26852/24983.pdf
DOI:10.1051/alr/2013048
http://archimer.ifremer.fr/doc/00157/26852/

Résumé : Les aciers inoxydables à haute teneur en molybdène présentent une excellente résistance à la corrosion et ont été récemment utilisés dans des applications marines. L'acier inoxydable de type 254 SMO contient du molybdène (6% Mo) et des quantités plus élevées en éléments d'alliages que les aciers inoxydables plus classiques tels que 304, 316 et 316L. Alors que Anees Uddin Malik et al. montrent que l’acier 254 SMO est moins sensible à la corrosion par piqûre en eau de mer du golfe persique, Abdulsalam et al. démontrent que bien que cet acier présente une bonne résistance à la corrosion, il reste encore sensible à une corrosion caverneuse (surtout en milieu à 16% en masse d’ion chlorure ou à plus de 30°C).La première partie de ce travail traite du comportement électrochimique de l’acier inoxydable 254 SMO immergé dans l’eau de mer naturelle en laboratoire. Ainsi deux sites de la Guyane ont été choisis pour effectuer des prélèvements d’eau. Des analyses physicochimiques de ces eaux sont réalisées et montrent que l’eau du site du Port Larivot contient une quantité en ions chlorures plus importante que celle de l’eau du site du Mahury. Une colonisation par des bactéries et crustacés (balanes) a été mise en évidence, à l’aide du microscope électronique à balayage environnemental. Les mesures électrochimiques, notamment la voltammétrie cyclique a montré l’existence d’une zone de passivation et l’augmentation du courant de passivation par un facteur de 10 en présence d’un biofilm pour l’acier inoxydable immergé en eau du Mahury durant 22 jours. La deuxième partie propose une étude approfondie du comportement de l’interface complexe métal/couche passive/biofilm. Trois différents coupons d’aciers inoxydables (brut, poli et grenaillé) ont été déposés sur site (in-situ) dans un premier temps. Dans une seconde étape, nous avons réalisé des expérimentations mixtes (incubation in-situ et croissance en laboratoire). L’évolution du potentiel d’abandon de ces aciers est très proche pour l’acier brut et l’acier poli. En revanche, celui de l’acier grenaillé, de par la présence des grains d’alumine à sa surface, affiche un comportement différent. Une étude comparative des deux expérimentations montre des différences concernant les paramètres électriques de l’interface complexe métal/couche passive/biofilm.
Stainless steels with high content in molybdenum present an excellent corrosion resistance and were recently used in marine applications. The stainless steel 254 SMO contains molybdenum (6 %) and higher amounts of alloying elements than conventional stainless steels such as 304, 316 and 316L. While Anees Uddin Malik et al. show that 254 SMO steel is less likely to be susceptible to pitting corrosion in Arabian Gulf sea water, Abdulsalam et al. demonstrate that although this steel has good resistance to corrosion, it remains still susceptible to crevice corrosion (especially in environment with 16 chloride percent weight or more than 30 ° C).The first part of this work deals with the electrochemical behaviour of stainless steel 254 SMO immersed in natural seawater at laboratory. Two sites in French Guyane were chosen to take samples of seawater. Physicochemical analyses of these waters are made and show than the in Port Larivot site seawater contains a higher quantity of chloride ion than to Mahury seawater. Colonization by bacteria and crustaceans (barnacles) was highlighted, using the environmental scanning electron microscope. The electrochemical measurements, including cyclic voltammetry showed the existence of a passivation region and increasing the passivation current by a factor of 10 in the presence of biofilm on stainless steel immersed in Mahury seawater during 22 days.The second part offers a detailed study of the behaviour of the interface metal/passive film/biofilm. Three different coupons of stainless steel (crude, polished and blasted) were deposited on the site (in-situ) in the first time. In a second step, we performed experiments mixed (in-situ incubation and growth in the laboratory). The evolution of the free potential of these steels is very close for crude steel and polished steel. Conversely, the blasted steel, by the presence of alumina grains on its surface, shows a different behaviour. A comparative study of those two experiments shows differences in the electrical parameters of the interface metal/passive film/biofilm.

http://www.theses.fr/2013AGUY0598/document

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Coastal aquifers often display seawater intrusion resulting in the formation of a salty water wedge progressing inland. This study investigates the mass transfers in the mixing zone at the freshwater-seawater interface where the water is out of equilibrium with the rock-forming carbonates. Investigations were conducted in two boreholes, separated by 5 m, at the Ses Sitjoles test site (Mallorca Island, Spain) where repeated electrical conductivity logs of the formation and the saturating fluid, as well as regular pore-water sampling and permanent downhole multi-parameter monitoring of the water were performed over a period of 9 a. In the mixing zone, the significant acidification, the calcite saturation index profile and the Ca concentration profile cannot be explained by conservative mixing nor by dissolution-precipitation reactions only. Conversely, the analysis of organic C content and of the distinctly different time-resolved pH profiles measured in the two boreholes suggests the development of perennial biomass that triggers calcite dissolution. Moreover, the presence of biomass seems to be correlated with the permeability and vertical connectivity at the meter-scale. It is speculated that the mechanism could be self-activated because the microbiological activity induces calcite dissolution and tends to increase porosity and permeability that favors biomass development.
ISSN: 0883-2927

hal-00937665
https://hal.archives-ouvertes.fr/hal-00937665
DOI : 10.1016/j.apgeochem.2013.09.011

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Urucum region (Mato Grosso do Sul, Brazil) contains Neoproterozoic–Cambrian manganese ore in the layers Mn-1, Mn-2, and Mn-3, which are interbedded with iron formations (IFs) from the Santa Cruz Formation (Jacadigo Group) and surrounded by carbonate rocks from the Bocaina and Tamengo Formations (Corumbá Group). These rocks fill an ancient graben, with sediments from the Santa Cruz Formation overlying fluvial deposits from the Urucum Formation and limestones from the Bocaina and Tamengo Formations deposited in the shallow marginal regions. As the graben deepened, it was flooded with microbe-rich seawater and hydrothermalism began. Iron and manganese precipitated within the pores in arkosic sandstones, thereby forming the clastic Lower Mn-1 ore layer. The remaining manganese was simultaneously deposited on the basin floor with clastic clay and silt from turbidity currents, thereby forming the Upper Mn-1 clastic–chemical ore layer. The sedimentation of Mn-1 and its host IFs was controlled by seawater saturation and homogeneous oxidation, which caused manganese and iron sedimentation and the death of microorganisms, generating mangano-ferriferous sediments with high P, Co and Ni contents. Mn-2 formed during periods of tectonic quiescence through water influxes that carried abundant microbes, Fe(II), Mn(II), and SiO2. Under UV radiation, these microbes oxidized Mn(II) and Fe(II) to form hydroxides and died, thereby forming biomass that was enriched in P, Co and Ni and minor carbonate adjacent to and below the oxycline. These microbes also formed kremydilites, oblate structures that resemble manganese stromatolites, within the biomass and produced CH4 and/or H2 gas bubbles. During early diagenesis, wormlike organisms inhabited the biomass and probably separated iron from manganese to produce cryptomelane microbialites, which agglutinated to form manganese micronodules that coalesced to form the massive layer Mn-2. This process ended with the disappearance of microorganisms and the sedimentation of the IFs, and a new water influx generated layer Mn-3 via the same process. The final seawater upwelling precipitated IFs in the basin depocenter, whereas limestone from the Tamengo Formation was deposited along the basin’s edges. The diagenesis initially transformed the manganese oxides into cryptomelane and then into hollandite.
ISSN: 0169-1368

hal-01684668
https://hal.archives-ouvertes.fr/hal-01684668
DOI : 10.1016/j.oregeorev.2017.09.018

Éditeur(s) : HAL CCSD Geological Society of America
Résumé : International audience
On the New Jersey shelf (offshore North America), the presence of pore water fresher than seawater is known from a series of boreholes completed during the 1970s and 1980s. To account for this fresh water, a fi rst hypothesis involves possible present-day active dynamic connections with onshore aquifers, while a second involves meteoritic and/or sub- ice-sheet waters during periods of lowered sea level. Expedition 313 drilled three boreholes on the middle shelf, offering a unique opportunity for the internal structure of the siliciclastic system to be accessed, at scales ranging from the depositional matrix to the continental margin. This enables the stratigraphic architecture to be correlated with the spatial distribution and salinity of saturating fl uids. Expedition 313 revealed both very low salinities (<3 g/L) at depths exceeding 400 m below the seafl oor and evidence for a multilayered reservoir organization, with freshand/ or brackish-water intervals alternating vertically with salty intervals. In this study we present a revised distribution of the salinity beneath the middle shelf. Our observations suggest that the processes controlling salinity are strongly infl uenced by lithology, porosity, and permeability. Saltier pore waters generally occur in coarse-grained intervals and fresher pore waters occur in fi ne-grained intervals. The transition from fresher to saltier intervals is often marked by cemented horizons that probably act as permeability barriers. In the lowermost parts of two holes, the salinity varies independently of lithology, suggesting different mechanisms and/or sources of salinity. We present an interpretation of the sedimentary facies distribution, derived from core, logs, and seismic profi le analyses, that is used to discuss the marginscale two-dimensional reservoir geometry and permeability distribution. These proposed geometries are of primary importance when considering the possible pathways and emplacement mechanisms for the fresh and salty water below the New Jersey shelf.
EISSN: 1553-040X

insu-00858241
https://hal-insu.archives-ouvertes.fr/insu-00858241
DOI : 10.1130/GES00855.1

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
We analyse the fluid flow regime within sediments on the Eastern levee of the modern Mississippi Canyon using 3D seismic data and downhole logging data acquired at Sites U1322 and U1324 during the 2005 Integrated Ocean Drilling Program (IODP) Expedition 308 in the Gulf of Mexico. Sulphate and methane concentrations in pore water show that sulphate-methane transition zone, at 74 and 94 m below seafloor, are amongst the deepest ever found in a sedimentary basin. This is in part due to a basinward fluid flow in a buried turbiditic channel (Blue Unit, 1000 mbsf), which separates sedimentary compartments located below and above this unit, preventing normal upward methane flux to the seafloor. Overpressure in the lower compartment leads to episodic and focused fluid migration through deep conduits that bypass the upper compartment, forming mud volcanoes at the seabed. This may also favour seawater circulation and we interpret the deep sulphate-methane transition zones as a result of high downward sulphate fluxes coming from seawater that are about 5-10 times above those measured in other basins. The results show that geochemical reactions within shallow sediments are dominated by seawater downwelling in the Mars-Ursa basin, compared to other basins in which the upward fluid flux is controlling methane-related reactions. This has implications for the occurrence of gas hydrates in the subsurface and is evidence of the active connection between buried sediments and the water column.
ISSN: 1468-8115

hal-00590501
https://hal.archives-ouvertes.fr/hal-00590501
DOI : 10.1111/j.1468-8123.2010.00304.x