Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La dégradation de l’arganeraie fait toujours l’objet d’un débat acharné et éclairé d’un intérêt considérable de la part du public, de la presse et des milieux universitaires. Plusieurs études ont été faites pour trouver des explications et des solutions à ce phénomène. La majorité des résultats de ces travaux avancent les conséquences négatives de l’élevage caprin sur l’écosystème arganeraie dont la réduction de la surface est importante et a tendance à s’accélérer sans être compensée spontanément parce que la régénération naturelle de l’arganier ne s’effectue plus, et ceci en raison de plusieurs facteurs : urbanisation, sécheresses, cultures intensives et extensives sous les arbres en plaine et sur les plateaux (en irrigué et en bour), et surtout, selon ces études, le surpâturage par les éleveurs de chèvres. Dans cette étude, nous n’allons pas jauger le bien-fondé de ces résultats. Cependant, l’argument et l’hypothèse que nous choisissons sont que la conjugaison du surpâturage avec d’autres facteurs parmi lesquels, essentiellement, le succès récent de l’huile d’argane à l’étranger, va bousculer les savoirs écologiques liés au troupeau et à sa conduite dans l’arganeraie. Cela entraîner leur forte érosion et contribue à déstabiliser l’équilibre séculaire de ce système agraire articulé autour de trois productions : l’arganier (argane), la culture d’orge (tomzine) et l’élevage de petits ruminants, surtout la chèvre (taghate).
The degradation of the arganeraie is always the object of a debate relentless and lit by a considerable interest on behalf of the public, of the press and by the university circles. Several studies have been made to find explanations and solutions to this phenomenon. The majority of the results of this work suggest the negative consequences of goat farming on the argan ecosystem including the reduction of the surface is important and tends to accelerate and is no longer compensated spontaneously because the natural regeneration of argan no longer takes place and this because of several factors: urbanization; droughts; intensive and extensive crops under trees in the plains and plateaus (irrigated and rainfed), and most importantly, according to these studies, overgrazing by goat herders. In this study, we will not assess the validity of these results. However, our argument and the assumption that we choose is that the combination of overgrazing with other factors among which retain essentially the recent success of argan oil abroad will upset the ecological knowledge related to herd and conduct in the argan tree and cause them severe erosion, destabilizing secular equilibrium of the agrarian system that revolves around three productions: argan (argan), the barley crop (tomzine) and breeding small ruminants especially goats (taghate).
Maroc

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.10342
http://journals.openedition.org/etudescaribeennes/10342

Éditeur(s) : HAL CCSD
Résumé : International audience
Background: Everyone is subject to environmental exposures from various sources, with negative health impacts (air, water and soil contamination, noise...) or with positive effects (e.g. green space). Studies considering such complex environmental settings in a global manner are rare.Aims: We propose to use data mining techniques to create a composite exposure index with a data-driven approach, in view to assess the environmental burden experienced by populations. We illustrate this approach on a large French metropolitan area.Methods: The study was carried out in the Great Lyon area (France, 1,260,348 inhabitants in 2007, 527 km²) at the census block group (BG) scale. Indicators on NO2 annual concentrations, noise levels, proximity to green spaces and to industrial plants, and road traffic were synthetized using Multiple Factor Analysis (MFA), which allows to explore the relations between exposures and BGs without a priori knowledge, and to synthetize indicators of different types. Hierarchical clustering was then used to create BG classes. Results: The four first components of the MFA explained respectively 23, 14, 13 and 12% of the total variance. Clustering in 3 classes group: 1) BGs far from industries, greener and with less noise and air pollution than the average; 2) BGs close to industries with less green spaces and air pollution than the average; and 3)BGs far from industries but with higher levels of noise, air pollution and traffic. Greater numbers of classes were tested in order to assess a variety of clustering.Conclusions: We present a data driven approach using data mining techniques, which seem overlooked for cumulative exposure assessment in complex environmental settings. Although it cannot be applied directly for risk or health effect assessment, the resulting index can help to identify hot spots of cumulative exposure, to prioritize urban policies or to compare the environmental burden across study areas in an epidemiological framework.
Environment and Health – Bridging South, North, East and West. Conference of ISEE, ISES and ISIAQ.
Basel, Switzerland

hal-01432884
https://hal.archives-ouvertes.fr/hal-01432884
https://hal.archives-ouvertes.fr/hal-01432884/document
https://hal.archives-ouvertes.fr/hal-01432884/file/Poster_2013_ISEE_20130711.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
In French Guiana, located on the northeastern coast of South America, bats of different species are very numerous. The infection of bats and their ticks with zoonotic bacteria, especially Rickettsia species, is so far unknown. In order to improve knowledge of these zoonotic pathogens in this French overseas department, the presence and diversity of tick-borne bacteria was investigated with molecular tools in bat ticks. In the beginning of 2013, 32 bats were caught in Saint-Jean-du-Maroni, an area close to the coast of French Guiana, and the ticks of these animals were collected. A total of 354 larvae of Argasidae soft ticks (Ornithodoros hasei) from 12 bats (Noctilio albiventris) were collected and 107 of them were analysed. DNA was extracted from the samples and quantitative real-time PCR was carried out to detect Rickettsia spp., Bartonella spp., Borrelia spp. and Coxiella burnetii. All tested samples were negative for Bartonella spp., Borrelia spp. and Coxiella burnetii. Rickettsia DNA was detected in 31 (28.9%) ticks. An almost entire (1118 base pairs long) sequence of the gltA gene was obtained after the amplification of some positive samples on conventional PCR and sequencing. A Bayesian tree was constructed using concatenated rrs, gltA, ompA, ompB, and gene D sequences. The study of characteristic sequences shows that this Rickettsia species is very close (98.3-99.8%) genetically to R. peacockii. Nevertheless, the comparative analysis of sequences obtained from gltA, ompA, ompB, rrs and gene D fragments demonstrated that this Rickettsia is different from the other members of the spotted fever group. The sequences of this new species were deposited in GenBank as Candidatus Rickettsia wissemanii. This is the first report showing the presence of nucleic acid of Rickettsia in Ornithodoros hasei ticks from South American bats. (C) 2016 Elsevier GmbH. All rights reserved.
TICKS AND TICK-BORNE DISEASES

hal-01459758
https://hal.archives-ouvertes.fr/hal-01459758
DOI : 10.1016/j.ttbdis.2016.09.004

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In this contribution we present a reconstruction of the overall lithotectonic architecture, from inner zones to external ones, of the Paleoproterozoic Trans North China Orogen, within the North China Craton. Moreover, forward thermobarometrical modeling on a kyanite-bearing gneiss yields a reliable prograde P-T-t-D path. In addition, 40Ar/39Ar dating on rocks from distinct litho-tectonic units helps us to distinguish several tectono-metamorphic events during the orogenic development. Considering these results, we propose a geodynamic model involving three cratonic blocks, namely the Western, Fuping and Eastern Blocks, separated by two oceans, the Lüliang and Taihang Oceans. The opening of oceanic basins occurred around 2.2-2.3 Ga. After the westward subductions of oceanic lithosphere, the Trans-North-China Orogen was built up through a polyphase tectonic evolution within the period 1900-1800 Ma. The first event (D1) corresponded to the emplacement of lower and upper nappes herein called the Orthogneiss-and-Volcanites Unit (OVU) and the Low-Grade-and-Mafic Unit (LGMU), respectively. The syn-metamorphic D1 deformation (1880 ± 10 Ma) is characterized by a NW-SE stretching and mineral lineation with a top-to-the SE sense of shear. During ongoing compression of the thickening orogenic crust, a second deformation event D2 (1850 ± 10 Ma) was responsible for (1) syn-anatectic lateral flow and exhumation of the orogenic root and (2) folding of the middle and upper parts of the orogenic wedge that consequently acquired a fan-type geometry. The late D3 (1830 ± 10 Ma) and D4 (1810 ± 10 Ma) events are related to late-orogenic normal and strike-slip shearing, respectively. In our present state of knowledge, the Paleoproterozoic Trans-North China Orogen might be regarded as the assemblage of two continent-continent collisional belts, both of which are characterized by nappe stacking accommodated by top-to-the E/SE ductile shearing. Continental subduction, crustal thickening, partial melting of overthickened crust, exhumation of HP rocks and deposition of syn-orogenic detrital basins are typical features of modern collisional-type orogens.
ISSN: 0301-9268

Droits : info:eu-repo/semantics/OpenAccess
insu-00628119
https://hal-insu.archives-ouvertes.fr/insu-00628119
https://hal-insu.archives-ouvertes.fr/insu-00628119/document
https://hal-insu.archives-ouvertes.fr/insu-00628119/file/Trap-PrecambrianResearch-2011.pdf
DOI : 10.1016/j.precamres.2011.09.008

Éditeur(s) : HAL CCSD
Résumé : Proceedings of the 10th International and Interdisciplinary Conference, CONTEXT 2017, Paris, France, June 20-23, 2017
International audience
This paper presents a research project in science education that is positioned at the intersection of computer science and context in learning. The main objective is to improve learning process by creating a software tool that participates, from the inception to the achievement, in the design of leaning scenarios, based on context effects, and, to show that context effects' learning is an efficient method in the development of student's knowledge regarding a concept. The software will compute differences between two – or more – external contexts based on specific parameters, related to the phenomenon or object that students are expected to study. The elaboration of the calculator (" the MazCalc ") is conducted using the design based research theory, meaning that several iterations of learning field experiments are conducted in order to collect relevant data which are used for the tool creation. In this paper, the design of the scenario involves students from North America and from the French West Indies and the concept studied is about geothermal energy. The instantiation of the context calculator is made with the geothermal object of study, and the differences are computed in the calculator between the two contexts mentioned. This example makes possible to validate the link between context effects predicted and observed, and also to study the impact of external context on the learning process. This study has been conducted thanks to the GEOTREF project support.
Modeling and Using Context

ISBN : 978-3-319-57837-8
hal-01625781
https://hal.univ-antilles.fr/hal-01625781
https://hal.univ-antilles.fr/hal-01625781/document
https://hal.univ-antilles.fr/hal-01625781/file/Elaborating%20the%20context%20calculator%20CONTEXT2017.pdf

Éditeur(s) : Public Library Science
Résumé : Transposable elements are major constituents of eukaryote genomes and have a great impact on genome structure and stability. They can contribute to the genetic diversity and evolution of organisms. Knowledge of their distribution among several genomes is an essential condition to study their dynamics and to better understand their role in species evolution. LTR-retrotransposons have been reported in many diverse eukaryote species, describing a ubiquitous distribution. Given their abundance, diversity and their extended ranges in C-values, environment and life styles, crustaceans are a great taxon to investigate the genomic component of adaptation and its possible relationships with TEs. However, crustaceans have been greatly underrepresented in transposable element studies. Using both degenerate PCR and in silico approaches, we have identified 35 Copia and 46 Gypsy families in 15 and 18 crustacean species, respectively. In particular, we characterized several full-length elements from the shrimp Rimicaris exoculata that is listed as a model organism from hydrothermal vents. Phylogenic analyses show that Copia and Gypsy retrotransposons likely present two opposite dynamics within crustaceans. The Gypsy elements appear relatively frequent and diverse whereas Copia are much more homogeneous, as 29 of them belong to the single GalEa clade, and species-or lineage-dependent. Our results also support the hypothesis of the Copia retrotransposon scarcity in metazoans compared to Gypsy elements. In such a context, the GalEa-like elements present an outstanding wide distribution among eukaryotes, from fishes to red algae, and can be even highly predominant within a large taxon, such as Malacostraca. Their distribution among crustaceans suggests a dynamics that follows a "domino days spreading'' branching process in which successive amplifications may interact positively.
Plos One (1932-6203) (Public Library Science), 2013-03 , Vol. 8 , N. 3 , P. e57675

Droits : This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.
http://archimer.ifremer.fr/doc/00185/29656/28030.pdf
DOI:10.1371/journal.pone.0057675
http://archimer.ifremer.fr/doc/00185/29656/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Until recently, our ability to implement and assess spatial marine management approaches has been limited by a lack of information regarding processes that bind marine ecosystems, including habitat locations, larval and adult movement, trophic interactions, and fisher behavior. However, recent advances in habitat-mapping technologies, genetics, marine microchemistry, animal tracking and numerical modeling have greatly enhanced our knowledge of these processes. Although these advances have yet to be fully integrated into management decisions, they have the potential to revolutionize spatial marine management. Nevertheless, this revolution will require advances in our ability to share and integrate data into models of marine ecosystems.
ISSN: 1877-3435

hal-00609464
https://hal.archives-ouvertes.fr/hal-00609464
DOI : 10.1016/j.cosust.2010.02.002

Éditeur(s) : HAL CCSD
Résumé : International audience
The method we propose is a new approach to the problem of extbf{satellite constellation design}. The main difficulties of this field are the size of the solution space, the computation time of the optimization criterion and the lack of information to analyse and improve a solution. Our model bypasses some of these obstacles by using an extbf{inverse approach} where services to be fulfilled are highlighted. The algorithm is composed of different layers solving different problems. We first use the specifications of the services to compensate for lack of information returned by the criterion to analyse and improve a solution. An orbit database introduces an expert knowledge linked to a robust estimator to set consistent orbital parameters. We use a partial evaluation of the constellation to reduce the criterion computation time. The highest level of the algorithm is a metaheuristic layer that drives the search across the wide solution space with a probabilistic tabu search.
ICAI Proceeding

hal-00634752
https://hal.archives-ouvertes.fr/hal-00634752

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : Traditional measures of diversity, namely the number of species as well as Simpson's and Shannon's indices, are particular cases of Tsallis entropy. Entropy decomposition, i.e. decomposing gamma entropy into alpha and beta components, has been previously derived in the literature. We propose a generalization of the additive decomposition of Shannon entropy applied to Tsallis entropy. We obtain a self-contained definition of beta entropy as the information gain brought by the knowledge of each community composition. We propose a correction of the estimation bias allowing to estimate alpha, beta and gamma entropy from the data and eventually convert them into true diversity. We advocate additive decomposition in complement of multiplicative partitioning to allow robust estimation of biodiversity.
ISSN: 1932-6203

hal-01189953
https://hal.archives-ouvertes.fr/hal-01189953
DOI : 10.1371/journal.pone.0090289
PRODINRA : 259795
PUBMED : 24603966

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A good knowledge of the intermittency of global solar radiation is crucial for selecting the location of a solar power plant and predicting the generation of electricity. This paper presents a multifractal analysis study of 367 daily global solar radiation sequences measured with a sampling rate of 1 Hz over one year at Guadeloupean Archipelago (French West Indies) located at 16 150N latitude and 60 300W longitude. The mean power spectrum computed follows a power law behavior close to the Kolmogorov spectrum. The intermittent and multifractal properties of global solar radiation data are investigated using several methods. Under this basis, a characterization for each day using three multifractal parameters is proposed.
ISSN: 0038-092X

hal-00903410
https://hal.archives-ouvertes.fr/hal-00903410
DOI : 10.1016/j.solener.2013.09.018

Éditeur(s) : Taylor & Francis
Résumé : This study is an attempt to produce an assessment of the impact of shrimp aquaculture in the Mekong Delta (Viet Nam) on mangrove ecosystems. For this exercise we selected two sub-areas (Ca Mau and Tra Vinh provinces) encompassing a variety of land uses and ecological conditions. Twenty stations in Tra Vinh and 15 stations in Ca Mau have been surveyed several times from September 2000 to March 2002. Field investigations included mangrove soils studies, measurements of pH and salinity of the water, analysis of mangrove flora, and density and structure of the vegetation. Four Systeme Probatoire de l'Observation de la Terre (SPOT) scenes were used for the discrimination of mangrove types and for the delineation of landscape units. For the first time, five ecologically distinct landscape classes were identified and delineated. Their possible links with the farming and yields of high valued species of shrimps, especially the giant tiger shrimp (Penaeus monodon) destined for export markets, need further studies. Since 1965, about 30% of mangrove ecosystems have been lost in Ca Mau Province and more than 30% of present mangroves are replanted monospecific stands. To the best of our knowledge, this is the first study which demonstrates that, in spite of deep and ancient man interactions in the Mekong Delta, five ecologically distinct classes of land use can be defined. Satellite surveys confirm a clear distribution of landscape units with possible links with shrimp aquaculture potentialities.
International Journal of Remote Sensing (0143-1161) (Taylor & Francis), 2004-11 , Vol. 25 , N. 21 , P. 4795-4812

Droits : 2004 Taylor & Francis
http://archimer.ifremer.fr/doc/2004/publication-2303.pdf
DOI:10.1080/01431160412331270858
http://archimer.ifremer.fr/doc/00000/2303/

Éditeur(s) : HAL CCSD
Résumé : accepté pour publication par l'International Journal of Number Theory
In this paper, we precise the asymptotic behaviour of Newton polygons of $L$-functions associated to character sums, coming from certain $n$ variable Laurent polynomials. In order to do this, we use the free sum on convex polytopes. This operation allows the determination of the limit of generic Newton polygons for the sum $Delta=Delta_1oplus Delta_2$ when we know the limit of generic Newton polygons for each factor. To our knowledge, these are the first results concerning the asymptotic behaviour of Newton polygons for multivariable polynomials when the generic Newton polygon differs from the combinatorial (Hodge) polygon associated to the polyhedron.
https://hal.archives-ouvertes.fr/hal-00551461

Droits : info:eu-repo/semantics/OpenAccess
hal-00551461
https://hal.archives-ouvertes.fr/hal-00551461
https://hal.archives-ouvertes.fr/hal-00551461/document
https://hal.archives-ouvertes.fr/hal-00551461/file/prodpolytopespubli.pdf

Éditeur(s) : HAL CCSD springer
Résumé : International audience
This paper focuses on the study of the behavior of a genetic algorithm based classier system, the Adapted Pittsburgh Classier System (A.P.C.S), on maze type environments containing aliasing squares. This type of environment is often used in reinforcement learning literature to assess the performances of learning methods when facing problems containing non markovian situations. Through this study, we discuss on the performance of the APCS upon two mazes (Woods 101 and Maze E2) and also on the eciency of an improvement of the APCS learning method inspired from the XCS: the covering mechanism. We manage to show that, without any memory mechanism, the APCS is able to build and to keep accurate strategies to produce regular sub-optimal solution to these maze problems. This statement is shown through a comparison between the results obtained by the XCS on two specic maze problems and those obtained by the APCS.
Lecture notes in computer science

hal-00542922
https://hal.archives-ouvertes.fr/hal-00542922
DOI : 10.1007/978-3-642-17508-4_8

Éditeur(s) : Elsevier
Résumé : The ZoNeCo programme, devoted to the evaluation of living and non-living marine resources within the Economic Zone of New Caledonia, illustrates clearly the Marine Benthic Habitats concept. It exhibits the study of the physical environment and disciplines such as geology and physical oceanography. The results acquired in these fields are used as bases to study the presence and the distribution of living species within a given habitat. The knowledge of all the parameters relative to each discipline is a useful guide for the evaluation and the sustainable management of living and nonliving resources.
Le programme ZoNéCo d'évaluation des ressources marines vivantes et non vivantes de la zone économique de Nouvelle-Calédonie illustre clairement le concept d'habitat benthique marin. Il implique l'étude du milieu physique et les disciplines telles que la géologie, la géophysique et l'océanographie physique. Les résultats acquis serviront de base à l'étude de la présence et de la répartition des espèces vivantes dans un habitat considéré. La connaissance de l'ensemble des paramètres relatifs à chacune des disciplines est un guide précieux pour l'évaluation et la gestion harmonieuse des ressources.
Oceanologica Acta (0399-1784) (Elsevier), 1999-11 , Vol. 22 , N. 6 , P. 557-566

Droits : 1999 Ifremer / CNRS / IRD / Editions scientifiques et medicales Elsevier SAS
http://archimer.ifremer.fr/doc/1999/publication-832.pdf
DOI:10.1016/S0399-1784(00)88947-1
http://archimer.ifremer.fr/doc/00000/832/

Éditeur(s) : HAL CCSD
Résumé :  
Improvement of wood quality related traits is currently hampered by costly chemical and technological assays and the necessity to wait until the trees are nearly mature to evaluate wood properties. The availability of a vast quantity of genomic data opens now a new avenue to identify early selection criteria based on molecular information and therefore increase selection efficiency. Association mapping is becoming a method of choice to identify QTN (quantitative trait nucleotide) that contribute to complex trait variation. The implementation of this approach requires on the one hand knowledge of the molecular mechanisms underlying trait variation and polymorphism within candidate genes, and on the other hand the availability of phenotypically well characterized genetic material. We are developing this strategy in the frame of the French maritime pine breeding program, an economically important forest tree species in the South Western Europe. About 500 trees from the breeding population were evaluated for wood physical and chemical properties through the analysis of 2,800 half-sib progenies and 1,500 clones in 8 field tests. These same trees are being genotyped at 185 SNPs obtained from the sequencing of 41 candidate genes, and an additional set of 200 eSNPs detected in 147 EST-contigs (to be used as control). Statistical association between the breeding values of the 500 trees and their respective genotypes will be tested using mixed models accounting for relatedness among individuals of the breeding population.
IUFRO-CTIA joint conference, "Adaptation, Breeding and Conservation in the Era of Forest Tree Genomics and Environmental Change"
Québec City, Canada

hal-01032075
https://hal.archives-ouvertes.fr/hal-01032075

Éditeur(s) : HAL CCSD
Résumé : International audience
The tropical rainforest of Amazonia is one of the most species-rich ecosystems on earth, with an estimated 16000 tree species. Due to this high diversity, botanical identification of trees in the Amazon is difficult, even to genus, often requiring the assistance of parataxonomists or taxonomic specialists. Advances in informatics tools offer a promising opportunity to develop user-friendly electronic keys to improve Amazonian tree identification.Here, we introduce an original multi-access electronic key for the identification of 389 tree genera occurring in French Guiana terra-firme forests, based on a set of 79 morphological characters related to vegetative, floral and fruit characters. Its purpose is to help Amazonian tree identification and to support the dissemination of botanical knowledge to non-specialists, including forest workers, students and researchers from other scientific disciplines.The electronic key is accessible with the free access software Xper², and the database is publicly available on figshare: https://figshare.com/s/75d890b7d707e0ffc9bf (doi: 10.6084/m9.figshare.2682550).
ISSN: 1314-2011

hal-01369143
https://hal-sde.archives-ouvertes.fr/hal-01369143
DOI : 10.3897/phytokeys.68.8707

Éditeur(s) : HAL CCSD Cépaduès-Éditions
Résumé : International audience
Nous présentons dans cet article un nouvel algorithme permettant la construction et la mise à jour incrémentale du FIAθ : FIASCO. Notre algorithme effectue un seul passage sur les données et permet de prendre en compte les nouveaux batches, itemset par itemset et pour chaque itemset, item par item.
EGC: Extraction et Gestion des Connaissances
Nice, France

hal-00447421
https://hal.archives-ouvertes.fr/hal-00447421
https://hal.archives-ouvertes.fr/hal-00447421/document
https://hal.archives-ouvertes.fr/hal-00447421/file/2008--Lionel_Vinceslas--FIASCO_un_nouvel_algorithme_d_extraction_d_itemsets_frequents_dans_les_flots_de_donnees.pdf

Éditeur(s) : HAL CCSD Springer International Publishing
Résumé : Industrial agriculture has clearly reached its limits. Industrial agriculture is not able anymore to satisfy the basic needs of the growing worldwide population while ensuring the conditions of reproduction of natural assets. New production models have to be designed to protect and reclame polluted and degraded agricultural areas. Agroecology is considered as a promising way to achieve ecologically-intensive agrosystems, since the seminal contribution of Altieri in 1995. Nevertheless agroecology has not fully emerged as a scientific discipline yet. Agroecology is more that a traditional scientific discipline because agroecology breaks the frontiers between biophysical sciences and social sciences. This chapter reviews the roots and evolution of agroecology in the first section. Here we propose a mathematical theory of viability to handle uncertainty and complexity within agrosystems. This theory allows to define a kern of viability in which the agrosystem stay viable in the long term (section “Scientific stakes: New frontiers”). However, agroecological innovations create new uncertainties and controversies that must be solved. Some solutions can be found individually while other solutions must by co-constructed using innovative collective actions and hydrid forums (Callon et al. 2001, section “Scientific controversy and uncertainty”). Such collective knowledge makes agroecology as the starting point of a representative democracy by setting up adaptive governance on territories (section “How to manage agrosystems in the context of global changes?”).
Sustainable Agriculture Reviews 14

ISBN : 978-3-319-06015-6
hal-01195372
https://hal.archives-ouvertes.fr/hal-01195372
DOI : 10.1007/978-3-319-06016-3_1
PRODINRA : 270790

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Transposable elements are major constituents of eukaryote genomes and have a great impact on genome structure and stability. They can contribute to the genetic diversity and evolution of organisms. Knowledge of their distribution among several genomes is an essential condition to study their dynamics and to better understand their role in species evolution. LTR-retrotransposons have been reported in many diverse eukaryote species, describing a ubiquitous distribution. Given their abundance, diversity and their extended ranges in C-values, environment and life styles, crustaceans are a great taxon to investigate the genomic component of adaptation and its possible relationships with TEs. However, crustaceans have been greatly underrepresented in transposable element studies. Using both degenerate PCR and in silico approaches, we have identified 35 Copia and 46 Gypsy families in 15 and 18 crustacean species, respectively. In particular, we characterized several full-length elements from the shrimp Rimicaris exoculata that is listed as a model organism from hydrothermal vents. Phylogenic analyses show that Copia and Gypsy retrotransposons likely present two opposite dynamics within crustaceans. The Gypsy elements appear relatively frequent and diverse whereas Copia are much more homogeneous, as 29 of them belong to the single GalEa clade, and species-or lineage-dependent. Our results also support the hypothesis of the Copia retrotransposon scarcity in metazoans compared to Gypsy elements. In such a context, the GalEa-like elements present an outstanding wide distribution among eukaryotes, from fishes to red algae, and can be even highly predominant within a large taxon, such as Malacostraca. Their distribution among crustaceans suggests a dynamics that follows a ``domino days spreading'' branching process in which successive amplifications may interact positively.
ISSN: 1932-6203

hal-01544761
https://hal.archives-ouvertes.fr/hal-01544761
DOI : 10.1371/journal.pone.0057675

Éditeur(s) : HAL CCSD
Résumé : International audience
The challenge is to implement research that can estimate the consequences ofclimate changes in terms of impact on terrestrial environments and resources.Emphasis should be placed on regions dependent on natural resources and forwhich demographic pressure is strong. Simulations obtained from climate modelprojections (using different Representative Concentration Pathways (RCPs))predict that the Mediterranean basin and its southern periphery are particularlyvulnerable to water resources and environmental impact (IPCC, AR5, 2013).An annual rainfall decrease by 30% is found for the projection period 2070-2099(IPCC, AR5, 2013) associated with a decrease in water resources by 30 to 50%(Milano, 2012). In addition, several studies using regional atmospheric modelsindicate an increase in the precipitation inter-annual variability with extremeevents and a spatial heterogeneous signature, superimposed on a decrease in thetotal precipitation amount (Giorgi and Lionello, 2008; Raible et al. 2010).Currently, regional climate projections are highly sensitive to the climate modelused. In particular, spatial resolution as well as local climate conditions seemto impact significantly on the simulations (Jacob et al. 2014).The Mediterranean region, at the interface between arid and temperate climateswith several mountainous areas, is a complex climate system affected by theinteractions between mid-latitude and sub-tropical processes. In this context,Morocco, located at the transition between a temperate climate to the North anda tropical climate to the south constitutes a key area for an impact and sensitivitystudy to global climate changes. The climate is influenced by the Atlantic Ocean,the Mediterranean Sea and the Sahara, together with a very steep orography inthe Atlas region. The precipitation distribution is therefore characterised by greatspatial variability, and exhibits a marked seasonality, a strong inter-annualvariability (Ouda et al. 2005) and in general a pronounced gradient from northto south and west to east. At a broader scale, Morocco is located on the subtropicalsubsidence path and between the Acores High and the Saharan Low (Agoussine,2003). Several studies have also identified strong links with inter-annualprecipitation variability and NAO index (Knippertz, 2003) as well as remoteclimate modes (Esper et al. 2007).Continental climate variability at a local/regional scale, if it is to be integratedin climate predictions, needs to be supported by long-term observation.Meteorological stations in Morocco provide climatic data mainly for the last40 years with only a few stations located in the mountainous region (Tramblayet al. 2012; 2013; Driouech et al. 2010). This climate database is also supportedby the IAEA network providing stations for which isotope tracers have beenapplied to daily/monthly rain and water vapour samples over 2 to 3 years between2000 and 2004. Besides the poor coverage of instrumented areas, lacustrinesystems can provide a climatic data set that offers access to short and long-termtime series of climate parameters when knowledge of modern lake water balanceis combined with lacustrine sedimentary-climate records. Lake sediment recordsideally provide high resolution climate/environmental information of the last10,000 years (Magny et al. 2013). This time interval (corresponding to theHolocene) is a key period to investigate short and long-term climate variabilityand to improve prediction in a warming climate.In this study we present an integrated approach focusing on a mountainous lake(Aguelmam Azigza). The modern lake system study is based on site monitoring(2012-2016) and available regional hydro-climatic data. These data show thatlake level changes during the instrumented period were mainly driven byprecipitation following the high inter-annual variability. These data are thencompared with accurately dated short sediment cores retrieved in the same lake.Micro-scale geochemical and sedimentological analyses of these sequencesenable us to identify various sedimentary facies that can be linked with periodsof high (low) lake levels over the past decades.
The Mediterranean Region under Climate ChangeLa méditerranée face au changement climatique

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