Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : Understanding the genetic mechanisms of speciation and basis of species differences is among the most important challenges in evolutionary biology. Two questions of particular interest are what roles divergent selection and chromosomal differentiation play in these processes. A number of recently proposed theories argue that chromosomal rearrangements can facilitate the development and maintenance of reproductive isolation and species differences by suppressing recombination within rearranged regions. Reduced recombination permits the accumulation of alleles contributing to isolation and adaptive differentiation and protects existing differences from the homogenizing effects of introgression between incipient species. Here, we examine patterns of genetic diversity and divergence in rearranged versus collinear regions in two widespread, extensively hybridizing sunflower species, Helianthus annuus and Helianthus petiolaris, using sequence data from 77 loci distributed throughout the genomes of the two species. We find weak evidence for increased genetic divergence near chromosomal break points but not within rearranged regions overall. We find no evidence for increased rates of adaptive divergence on rearranged chromosomes; in fact, collinear chromosomes show a far greater excess of fixed amino acid differences between the two species. A comparison with a third sunflower species indicates that much of the nonsynonymous divergence between H. annuus and H. petiolaris probably occurred during or soon after their formation. Our results suggest a limited role for chromosomal rearrangements in genetic divergence, but they do document substantial adaptive divergence and provide further evidence of how species integrity and genetic identity can be maintained at many loci in the face of extensive hybridization and gene flow.
ISSN: 0737-4038

hal-01032153
https://hal.archives-ouvertes.fr/hal-01032153
DOI : 10.1093/molbev/msp043

Éditeur(s) : Pêche thonière et dispositifs de concentration de poissons, Caribbean-Martinique, 15-19 Oct 1999
Résumé : A development programme for the promotion of FADs in Sao Tome and Principe has implemented an original interactive approach by granting a predominant place to the initiative of the target group and its participation in decision making. The appropriation process of the innovative fads by the beneficiaries takes place in three stages described herewith. the technical research phase. This consists of formally describing an idea in reply to an expressed or potential need. The envisaged fad type is developed and tested by the project's agents in order to obtain a technically appropriate prototype.- the research and adjustment phase. The fad is given to a small number of people to be used in real-life conditions. Reaction surveys will enable its pertinence to be tested and its adaptation to normal conditions of use. This second phase results in the production of a technically and socio-economically appropriated fad. - the diffusion-perpetuation phase. This entails i) identification of the sequences of the various stages, ii) definition and grouping of contributions by the various parties, iii) production of educational auxiliaries, iv) initiating actions for user awareness and demonstration, v) staff training, vi) monitoring of the fad "socialisation", vii) solving funding problems.Original Abstract: Un projet visant, entre autres, la promotion de DCP pour la peche artisanale fonctionne a Sao Tome et Principe depuis 1993. Le processus d'appropriation daune telle innovation par les beneficiaires comprend trois etapes ici decrites. La phase de recherche technique. Il s'agit d'instrumentaliser une idee en reponse a un besoin exprime ou potentiel. L'innovation envisagee est mise au point et testee par les agents du projet en milieu controle de facon a obtenir un prototype techniquement approprie. La phase de recherche-developpement: l'outil est confie a un petit nombre de personnes pour une utilisation en conditions reelles. C'est une phase de mise au point interactive, seule susceptible de provoquer une reelle appropriation par les recipiendaires. Des enquetes de reaction permettront de tester sa pertinence et de l'adapter aux conditions normales d'utilisation. Cette seconde phase debouche sur la production d'un outil de reference approprie techniquement et socio-economiquement. La phase de diffusion-perennisation: il s'agira la : i) d'identifier les sequences d'intervention, ii) d'identifier et de regrouper les apports des differentes parties, iii) de definir et de produire les auxiliaires pedagogiques (manuels, affiches, radio), iv) d'entreprendre des actions de sensibilisation et de demonstration, v) de former les personnels, vi) de veiller a la socialisation de l'innovation, pour les outils collectifs, vii) de resoudre le probleme du financement.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00042/15306/12641.pdf
http://archimer.ifremer.fr/doc/00042/15306/

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Ameloblastin (AMBN) is a phosphorylated, proline/glutamine-rich protein secreted during enamel formation. Previous studies have revealed that this enamel matrix protein was present early in vertebrate evolution and certainly plays important roles during enamel formation although its precise functions remain unclear. We performed evolutionary analyses of AMBN in order to (i) identify residues and motifs important for the protein function, (ii) predict mutations responsible for genetic diseases, and (iii) understand its molecular evolution in mammals. Results: In silico searches retrieved 56 complete sequences in public databases that were aligned and analyzed computationally. We showed that AMBN is globally evolving under moderate purifying selection in mammals and contains a strong phylogenetic signal. In addition, our analyses revealed codons evolving under significant positive selection. Evidence for positive selection acting on AMBN was observed in catarrhine primates and the aye-aye. We also found that (i) an additional translation initiation site was recruited in the ancestral placental AMBN, (ii) a short exon was duplicated several times in various species including catarrhine primates, and (iii) several polyadenylation sites are present. Conclusions: AMBN possesses many positions, which have been subjected to strong selective pressure for 200 million years. These positions correspond to several cleavage sites and hydroxylated, O-glycosylated, and phosphorylated residues. We predict that these conserved positions would be potentially responsible for enamel disorder if substituted. Some motifs that were previously identified as potentially important functionally were confirmed, and we found two, highly conserved, new motifs, the function of which should be tested in the near future. This study illustrates the power of evolutionary analyses for characterizing the functional constraints acting on proteins with yet uncharacterized structure.
ISSN: 1471-2148

Droits : http://creativecommons.org/licenses/by/
hal-01212816
http://hal.upmc.fr/hal-01212816
http://hal.upmc.fr/hal-01212816/document
http://hal.upmc.fr/hal-01212816/file/s12862-015-0431-0.pdf
DOI : 10.1186/s12862-015-0431-0

Éditeur(s) : HAL CCSD INRA/EDP Sciences
Résumé : Deux espèces de la forêt de basse altitude d'Amérique tropicale (Antilles), Tabebebuia heterophylla (poirier-pays) et Hymenaea courbaril (courbaril), se révèlent intéressantes pour le reboisement des régions les moins arrosées. Le comportement de ces espèces vis-à-vis de la sécheresse est étudié grâce à un traitement sous forme d'arrosage différencié appliqué à des jeunes plants âgés de 1 an, en pépinière. L'évolution de l'état hydrique des plants est suivie au cours de 6 mois d'expérience à l'aide de la bombe à pression. Les valeurs caractéristiques du potentiel hydrique, du potentiel de base (Pb) et du potentiel minimum (Pm), sont étudiées. La cinétique journalière du potentiel de base indique que le poirier-pays se comporte comme une espèce plus économe de son eau que le courbaril. Toutefois, le meilleur enracinement du poirier-pays provoque un rapide dessèchement du sol. Ceci se traduit par une chute plus précoce du potentiel de base de cette espèce dans les lots moins arrosés (arrosage 1 fois par semaine). Durant la phase de dessèchement, l'évolution de la différence Pm-Pb indique une fermeture stomatique maximale pour un potentiel de base plus élevé pour le poirier-pays (-25 bars) que pour le courbaril (-32 bars). Les résultats obtenus dans les mesures d'élongation des axes montrent que l'arrêt de croissance pour les deux espèces se produit pour des valeurs élevées de Pb voisines de - 6 bars pour le poirier-pays et - 7 bars pour le courbaril. Dans les deux cas, seule la fréquence de 1 arrosage hebdomadaire réduit de façon notable la formation de matière sèche et la croissance chez les plants.
ISSN: 0003-4312

hal-01032356
https://hal.archives-ouvertes.fr/hal-01032356

Éditeur(s) : HAL CCSD American Society of Hematology
Résumé : International audience
Polycythemia vera (PV) is characterized by an increased RBC mass, spontaneous erythroid colony formation, and the JAK2V617F mutation. PV is associated with a high risk of mesenteric and cerebral thrombosis. PV RBC adhesion to endothelial laminin is increased and mediated by phosphorylated erythroid Lu/BCAM. In the present work, we investigated the mechanism responsible for Lu/BCAM phosphorylation in the presence of JAK2V617F using HEL and BaF3 cell lines as well as RBCs from patients with PV. High levels of Rap1-GTP were found in HEL and BaF3 cells expressing JAK2V617F compared with BaF3 cells with wild-type JAK2. This finding was associated with increased Akt activity, Lu/BCAM phosphorylation, and cell adhesion to laminin that were inhibited by the dominant-negative Rap1S17N or by the specific Rap1 inhibitor GGTI-298. Surprisingly, knocking-down EpoR in HEL cells did not alter Akt activity or cell adhesion to laminin. Our findings reveal a novel EpoR-independent Rap1/Akt signaling pathway that is activated by JAK2V617F in circulating PV RBCs and responsible for Lu/BCAM activation. This new characteristic of JAK2V617F could play a critical role in initiating abnormal interactions among circulating and endothelial cells in patients with PV.
ISSN: 0006-4971

inserm-00821109
http://www.hal.inserm.fr/inserm-00821109
http://www.hal.inserm.fr/inserm-00821109/document
http://www.hal.inserm.fr/inserm-00821109/file/De_Grandis_Blood_2013.pdf
DOI : 10.1182/blood-2012-07-440487

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : L’objectif de ce numéro de la Revue Etudes Caribéennes est d’ouvrir une réflexion sur le concept de luxe, d’investir le luxe dans tous ses états. Il s’agit d’interroger les fondements du luxe, de la théorie à la matérialité, de la fabrication à la consommation, entre distinction provocante et esthétisation des genres de vie. Dans le cadre de ce numéro thématique, le luxe est envisagé dans une approche pluridisciplinaire, de la philosophie à la sociologie, de l’économie à l’aménagement du territoire … Les contributions pourront aborder le luxe sous un angle spécifique (économie du luxe, le luxe à travers l’histoire), traiter une dimension particulière du luxe, à travers un produit emblématique ou la construction de territoires singuliers (les territoires du luxe). Une attention particulière sera portée à l’industrie du luxe avec ses grandes marques et ses logiques de création et de production. Enfin, le luxe existe à travers la construction de ses légendes qui sont autant de signes distinctifs qui stimulent les consommateurs occasionnels et exclusifs. Les thématiques privilégiées seront : 1. Le concept du luxe à travers les différents champs disciplinaires (« consommation ostentatoire », « distinction provocante », « esthétisation des comportements », « marché-jugement ») 2. Le luxe dans le temps (entre sacré et ostentatoire, la signification du luxe, les mythes du luxe) 3. Le luxe et la création (les objets qui consacrent le luxe, de la création à la construction de la légende) 4. L’industrie du luxe (haute couture, joaillerie, spiritueux … griffes et grandes marques du luxe) 5. L’économie du luxe (le luxe en période de crise, l’économie des singularités) 6. Le luxe dans le champ du tourisme (l’hôtellerie de luxe, les destinations du tourisme de luxe) 7. La durabilité du luxe, entre renouvellement et éternité This issue of “Revues Etudes Caribéennes” aims to reflect upon the concept of luxury, to invest the luxury in all its states. It comes to question the foundations of luxury, from the theory to the materiality, from the manufacture to the consumption, between provocative distinction and aesthetization in all walk of life. Within the context of this thematic issue, luxury is envisaged a multidisciplinary approach, ranging from philosophy to sociology, from the economy to the development of the territory... Imputs may approach luxury a specific angle (economics of luxury, the luxury throughout history). They can treat a particular dimension of luxury, through an emblematic product or construction of luxury territories. Special attention will be paid to the luxury industry with its brands and its logic of creation and production. Finally, luxury exist through the construction of its legends which are formed from many distinctive indicators that stimulate both the casual and the exclusive consumers. The priorities themes will be: 1. The concept of luxury across the different disciplinary fields ('conspicuous consumption', 'provocative distinction", 'aestheticization of behaviour', and 'market-judgement') 2. Luxury in time (between the sacred and ostentatious, the meaning of luxury, the myths of luxury) 3. Luxury and Creation (objects dedicated to luxury, from the creation to the construction of the legend) 4. Luxury industry (haute couture, jewelry, spirits... claws and luxury brands) 5. The economy of luxury (luxury during economic crisis, and the economy of singularities) 6. Luxury in tourism (luxury hotels, luxury destinations) 7. The sustainability of luxury, between renewal and eternity El objetivo de este número de la Revista Estudios Caribeños es de abrir una reflexión sobre el concepto de lujo, de invertir el lujo en todos sus estados. Se trata de interrogar los fundamentos del lujo, de la teoría a la materialidad, de la fabricación a la consumición, entre distinción provocativa y formas de esteticismo de la vida. En este número temático, el lujo está considerado en un enfoque pluridisciplinar, de la filosofía a la sociología, de la economía a planificación del territorio…Las contribuciones podrán abordar el lujo sobre un ángulo específico (economía del lujo, el lujo a través de la historia), tratar una dimensión particular del lujo, a través de un producto emblemático o la construcción de territorios singulares (los territorios del lujo). Una atención particular será llevada a la industria del lujo con sus grandes marcas y lógicas de creación y de producción. En fin, el lujo existe a través de la construcción de sus leyendas que son tantos signos distintivos que estimulan los consumidores ocasionales y exclusivos. Los temas privilegiados serán: 1. El concepto del lujo a través de los diferentes campos disciplinarios (« consumación ostentosa », « distinción provocadora », « estetización de comportamientos, «juicio del mercado « ) 2. El lujo en el tiempo (entre sagrado y ostentatorio, el significado del lujo, los mitos del lujo) 3. El lujo y la creación (los objetos que consagran el lujo, de la creación a la construcción de la leyenda) 4. La industria del lujo (alta costura, joyería, espiritoso… uñas y grandes marcas del lujo) 5. La economía del lujo (el lujo en período de crisis, la economía de las singularidades) 6. El lujo en el campo del turismo (la hostelería de lujo, las destinaciones del turismo de lujo) 7. La duración del lujo, entre renovación y eternidad

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.7310
http://journals.openedition.org/etudescaribeennes/7310

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Diagnosis of toxoplasmic encephalitis (TE) in patients with AIDS is not straightforward because clinicians rely initially on an empiric diagnosis based on clinical and radiographic improvement to specific anti-Toxoplasma gondii therapy. There is therefore a need for biological tools to improve the diagnosis of TE, especially in tropical areas where this diagnosis is likely to be underestimated. The use of PCR testing in blood samples for the diagnosis of TE has been limited by its poor sensitivity in the studies conducted in Europe. In tropical South America, the results of PCR sensitivity in blood samples were controversial. Considering that T. gondii strains from tropical South America have substantial genetic and pathogenic differences with those from USA and Europe, it is therefore important to re-evaluate the performance of the PCR assay in blood samples for the diagnosis of TE in AIDS patients from this region. Our results showed that the only interest of PCR would be in the most severe forms of TE with altered consciousness because PCR is more likely to be positive. We also provided important genotyping data on T. gondii strains isolated in human cases of toxoplasmosis in the Caribbean and in South America.
ISSN: 1935-2727

hal-01503761
https://hal-unilim.archives-ouvertes.fr/hal-01503761
https://hal-unilim.archives-ouvertes.fr/hal-01503761/document
https://hal-unilim.archives-ouvertes.fr/hal-01503761/file/journal.pntd.0004790.pdf
DOI : 10.1371/journal.pntd.0004790

Éditeur(s) : HAL CCSD Geological Society
Résumé : Gem opals from Wegel Tena, Wollo Province, Ethiopia, occur in Oligocene rhyolitic ignimbrites. They display a unique geochemistry, with some samples yielding the highest Ba concentrations ever recorded. They are generally much richer in chemical impurities than opals from other localities. For example, the sum Al+Fe or the sum Na+Mg+Ca+K+Ba are often higher. These geochemical features make them easy to distinguish from other opals worldwide. We observed strong geochemical variations and some good positive correlations in our samples, such as Al+Fe vs. Na+Mg+Ca+K+Ba, Al vs Ca, or Ba vs Ca. This shows that the crystallography of opal has controlled, at least in part, the incorporation of chemical impurities, although opal is not well-crystallized. In addition, the multimodal distributions of several chemical impurities (e.g. U vs Sr, Al vs Ca, Ba vs Ca, etc.) suggest at least two origins of silica: weathering of feldspars and weathering of volcanic glass. In addition, opals from Wegel Tena contain numerous well-preserved microscopic plant fossils. Moreover, their host rock exhibits features typical of pedogenesis (abundant clays, desiccation cracks, and grain size sorting). We propose that the opals at Wegel Tena formed during the Oligocene period when volcanic emissions stopped for a time long enough to allow weathering of ingimbrites and therefore liberation of silica. This accompanied the formation of soil and development of plant life, and some plants were trapped in opal.
ISSN: 1467-7873

hal-00767555
https://hal.archives-ouvertes.fr/hal-00767555
DOI : 10.1144/1467-7873/10-MINDEP-058

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : Architectural analyses of temperate tree species using a chronological approach suggest that the expression of epicormic branches is closely related to low growth rates in the axes that make up the branching system. Therefore, sole consideration of epicormic criteria may be sufficient to identify trees with low secondary growth levels or with both low primary and secondary growth levels. In a tropical tree such as Dicorynia guianensis (basralocus), where chronological studies are difficult, this relationship could be very useful as an easily accessible indicator of growth potentials. A simple method of architectural tree description was used to characterize the global structure of more than 1650 basralocus trees and to evaluate their growth level. Measurements of simple growth characters [height, basal diameter, internode length of submittal part (top of the main axis of the tree)] and the observation of four structural binary descriptors on the main stem (presence of sequential branches and young epicormic branches, state of the submittal part, global orientation), indicated that epicormic branch formation is clearly related to a decrease in length of the successive growth units of the main stem. Analysis of height vs. diameter ratios among different tree subgroups, with and without epicormic branching, suggested that trees with epicormic branches generally have a low level of secondary growth compared with primary growth.
ISSN: 0305-7364

hal-01032037
https://hal.archives-ouvertes.fr/hal-01032037
DOI : 10.1093/aob/mcg119

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Domestication can influence many functional traits in plants, from overall life-history and growth form to wood density and cell wall ultrastructure. Such changes can increase fitness of the domesticate in agricultural environments but may negatively affect survival in the wild. We studied effects of domestication on stem biomechanics in manioc by comparing domesticated and ancestral wild taxa from two different regions of greater Amazonia. We compared mechanical properties, tissue organisation and wood characteristics including microfibril angles in both wild and domesticated plants, each growing in two different habitats (forest or savannah) and varying in growth form (shrub or liana). Wild taxa grew as shrubs in open savannah but as lianas in overgrown and forested habitats. Growth form plasticity was retained in domesticated manioc. However, stems of the domesticate showed brittle failure. Wild plants differed in mechanical architecture between shrub and liana phenotypes, a difference that diminished between shrubs and lianas of the domesticate. Stems of wild plants were generally stiffer, failed at higher bending stresses and were less prone to brittle fracture compared with shrub and liana phenotypes of the domesticate. Biomechanical differences between stems of wild and domesticated plants were mainly due to changes in wood density and cellulose microfibril angle rather than changes in secondary growth or tissue geometry. Domestication did not significantly modify "large-scale" trait development or growth form plasticity, since both wild and domesticated manioc can develop as shrubs or lianas. However, "finer-scale" developmental traits crucial to mechanical stability and thus ecological success of the plant were significantly modified. This profoundly influenced the likelihood of brittle failure, particularly in long climbing stems, thereby also influencing the survival of the domesticate in natural situations vulnerable to mechanical perturbation. We discuss the different selective pressures that could explain evolutionary modifications of stem biomechanical properties under domestication in manioc.
PLoS ONE

halsde-00917926
https://hal.archives-ouvertes.fr/halsde-00917926
https://hal.archives-ouvertes.fr/halsde-00917926/document
DOI : 10.1371/journal.pone.0074727

Éditeur(s) : HAL CCSD Ferrata Storti Foundation
Résumé : International audience
BACKGROUND: Abnormal interactions between red blood cells, leukocytes and endothelial cells play a critical role in the occurrence of the painful vaso-occlusive crises associated with sickle cell disease. We investigated the interaction between circulating leukocytes and red blood cells which could lead to aggregate formation, enhancing the incidence of vaso-occlusive crises. DESIGN AND METHODS: Blood samples from patients with sickle cell disease (n=25) and healthy subjects (n=5) were analyzed by imaging and classical flow cytometry after density gradient separation. The identity of the cells in the peripheral blood mononuclear cell layer was determined using antibodies directed specifically against white (anti-CD45) or red (anti-glycophorin A) blood cells. RESULTS: Aggregates between red blood cells and peripheral blood mononuclear cells were visualized in whole blood from patients with sickle cell disease. The aggregation rate was 10-fold higher in these patients than in control subjects. Both mature red blood cells and reticulocytes were involved in these aggregates through their interaction with mononuclear cells, mainly with monocytes. The size of the aggregates was variable, with one mononuclear cell binding to one, two or several red blood cells. Erythroid Lu/basal cell adhesion molecule and α(4)β(1) integrin were involved in aggregate formation. The aggregation rate was lower in patients treated with hydroxycarbamide than in untreated patients. CONCLUSIONS: Our study gives visual evidence of the existence of circulating red blood cell-peripheral blood mononuclear cell aggregates in patients with sickle cell disease and shows that these aggregates are decreased during hydroxycarbamide treatment. Our results strongly suggest that erythroid Lu/basal cell adhesion molecule proteins are implicated in these aggregates through their interaction with α(4)β(1) integrin on peripheral blood mononuclear cells.
ISSN: 0390-6078

inserm-00821120
http://www.hal.inserm.fr/inserm-00821120
http://www.hal.inserm.fr/inserm-00821120/document
http://www.hal.inserm.fr/inserm-00821120/file/1841.full.pdf
DOI : 10.3324/haematol.2010.026294

Éditeur(s) : HAL CCSD Springer International Publishing
Résumé : The intensive farming practices that have been developed over the past 60 years are based mainly on the use of chemical inputs such as fertilisers and pesticides, mechanical tillage and monoculture. The limitations of these methods are now clear: long-term degradation of soil fertility, impacts on the environment and human health, high consumption of fossil fuels, low efficiency of inputs and threats to food security in a context of climate change. Would farming practices that rely on the activation of ecological processes be an alternative to achieve a balance between high productivity and environmental preservation? While many studies suggest a positive relationship between soil biodiversity and ecosystem services, there is considerable debate on the form such agricultural systems should take. This study reviewed the state of current knowledge and identified aspects requiring further research to achieve the aim of sustainable intensification of agriculture. The following major points emerged: 1) Most studies focused on the evaluation of individual practices. However, changes in farmers’ cropping practices to take advantage of soil biodiversity services would need to manage not only the interactions between various practices but also the trade-off between the technical and socio economic constraints of cropping systems. Advances in agricultural system design approaches may help to ensure appropriate trade-offs. 2) More attention should be given to drawing on knowledge from different sources: laboratory studies focusing on the ecological functions of soil biodiversity, experimental surveys on farmers’ fields to rank the farming practices and processes to be included in site-specific models, and on- station experiments to test hypotheses and acquire additional reference material. 3) Whereas advances in technical and scientific knowledge provide an increasing number of relevant indicators for characterizing biodiversity and ecological functions, studies are rarely targeted at the development of indicators that are accessible to farmers or their technical advisors. The lack of indicators accessible to grassroots players for evaluating the impacts of their decisions on soil biodiversity remains a serious obstacle to the development of innovative agro-ecological systems.
Sustainable Agriculture Reviews 14

ISBN : 978-3-319-06015-6
hal-01268743
https://hal.archives-ouvertes.fr/hal-01268743
DOI : 10.1007/978-3-319-06016-3_5
PRODINRA : 270786

Éditeur(s) : HAL CCSD
Résumé : International audience
The search for safe antimalarial compounds acting against asexual symptom-responsible stages and sexual transmission-responsible forms of Plasmodium species is one of the major challenges in malaria elimination programs. So far, among current drugs approved for human use, only primaquine has transmission-blocking activity. The discovery of small molecules targeting different Plasmodium falcip-arum life stages remains a priority in antimalarial drug research. In this context, several independent studies have recently reported antiplasmodial and transmission-blocking activities of commonly used stains, dyes and fluorescent probes against P. falciparum including chloroquine-resistant isolates. Herein we have studied the antimalarial activities of dyes with different scaffold and we report that the triar-ylmethane dye (TRAM) Brilliant green inhibits the growth of asexual stages (IC 50 2 mM) and has exflagellation-blocking activity (IC 50 800 nM) against P. falciparum reference strains (3D7, 7G8) and chloroquine-resistant clinical isolate (Q206). In a second step we have investigated the antiplasmodial activities of two polysulfonated triarylmethane food dyes. Green S (E142) is weakly active against P. falciparum asexual stage (IC 50 x 17 mM) whereas Patent Blue V (E131) is inactive in both antimalarial assays. By applying liquid chromatography techniques for the culture supernatant analysis after cell washings and lysis, we report the detection of Brilliant green in erythrocytes, the selective uptake of Green S (E142) by infected erythrocytes, whereas Patent Blue V (E131) could not be detected within non-infected and 3D7-infected erythrocytes. Overall, our results suggest that two polysulfonated food dyes might display different affinity with transporters or channels on infected RBC membrane.
International journal for parasitology. Drugs and drug resistance

Droits : http://creativecommons.org/licenses/by-nc-sa/
pasteur-01614675
https://hal-pasteur.archives-ouvertes.fr/pasteur-01614675
https://hal-pasteur.archives-ouvertes.fr/pasteur-01614675/document
https://hal-pasteur.archives-ouvertes.fr/pasteur-01614675/file/Leba%20LJ-article%20colorant-version%20publiee.pdf
DOI : 10.1016/j.ijpddr.2017.07.002

Éditeur(s) : HAL CCSD
Résumé : Semi-volatile organic compounds (SVOCs) are widely present in indoor environments and are suspected to be repro- or neurotoxic but little is known on the health impact on SVOC mixtures. The objective of this work is to derive cumulative toxicity indicators for SVOCs detected in French dwellings in carrying forward a cumulative health risk assessment. SVOCs were grouped according to their repro- and neurotoxic common modes of action (i.e. decrease in serum testosterone concentrations, decrease in neuronal viability). Benchmark doses (BMDs) were then estimated by modeling dose-response relationships from scientific literature (Hill models, PROAST, RIVM). Comparable BMDs were estimated only for 6 of the 19 reprotoxic SVOCs which are responsible to 10 or 50% decrease in testosterone in adult male rats orally exposed. Estimated relative potency factors (RPFs) from BMDs are similar according to the response level (from 1600 for the B(a)P to 0.1 for the BBP), excepted for bisphenol A moving from 7E+6 to 180. For in vitro neuronal death, BMDs were estimated for 13 neurotoxic SVOCs using data from different cell lines and species. BMDs equivalent to a 10% of response range from 0.07 (PCB-153) to 95 µM (diazinon). The originality of this work is the grouping of compounds from different chemical families which we are really exposed to. BMDs estimation from published data was possible but many methodological limitations lead us to put forward recommendations especially on the standardization of experimental protocols and the availability of results in adapted format for dose-response relationship modeling.
Les composés organiques semi volatils (COSV) sont largement présents dans les environnements intérieurs et sont suspectés d’être repro- ou neurotoxiques, mais peu de données sont disponibles quant à leur toxicité en mélanges. L’objectif de cette thèse est de proposer des indicateurs de toxicité cumulés pour les COSV détectés dans les logements français, dans un cadre d’évaluation des risques sanitaires cumulés. Les COSV ont été regroupés en fonction de leurs modes d’action communs, en lien avec les effets reprotoxiques (diminution de la concentration de testostérone sérique) et neurotoxiques (diminution de la viabilité neuronale). Des benchmark doses (BMD) ont ensuite été estimées par modélisation (modèle de Hill, PROAST, RIVM) des relations dose-réponse de la littérature décrivant la réponse d’intérêt. Des BMD comparables ont pu être estimées seulement pour 6 des 19 COSV reprotoxiques induisant une diminution de testostérone de 10 ou 50 % chez le rat adulte exposé par voie orale. Les facteurs de toxicité relatifs (RPF) estimés à partir des BMD sont sensiblement les mêmes en fonction du niveau de réponse (de 1600 pour le B(a)P à 0,1 pour le BBP), excepté pour le biphénol A qui passe de 7E+6 à 180. Considérant la mort neuronale in vitro, des BMD ont pu être estimées pour 13 COSV neurotoxiques, à partir de données provenant de différentes lignées et espèces. Les BMD équivalent à un niveau de réponse de 10 % s’échelonnent de 0,07 (PCB-153) à 95 µM (diazinon). L’originalité de ce travail repose sur le regroupement de composés de familles chimiques différentes qui constituent des contaminations réelles de notre environnement. Si l’estimation des quelques BMD a été possible à partir des données de la littérature, de nombreuses limites méthodologiques conduisent à émettre des recommandations en particulier sur la standardisation des protocoles expérimentaux et la disponibilité des résultats sous une forme adaptée à la modélisation de la relation dose-réponse.
https://tel.archives-ouvertes.fr/tel-01308535

NNT : 2015REN1B019
tel-01308535
https://tel.archives-ouvertes.fr/tel-01308535
https://tel.archives-ouvertes.fr/tel-01308535/document
https://tel.archives-ouvertes.fr/tel-01308535/file/Kevin_Fournier-.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
Many different proteins self-aggregate into insoluble fibrils growing apically by reversible addition of elementary building blocks. But beyond this common principle, the modalities of fibril formation are very disparate, with various intermediate forms which can be reshuffled by minor modifications of physico-chemical conditions or amino-acid sequences. To bypass this complexity, the multifaceted phenomenon of fibril formation is reduced here to its most elementary principles defined for a linear prototype of fibril. Selected generic features, including nucleation, elongation, and conformational recruitment, are modeled using minimalist hypotheses and tools, by separating equilibrium from kinetic aspects and in vitro from in vivo conditions. These reductionist approaches allow to bring out known and new rudiments, including the kinetic and equilibrium effects of nucleation, the dual influence of elongation on nucleation, the kinetic limitations on nucleation and fibril numbers, and the accumulation of complexes in vivo by rescue from degradation. Overlooked aspects of these processes are also pointed: the exponential distribution of fibril lengths can be recovered using various models because it is attributable to randomness only. It is also suggested that the same term "critical concentration" is used for different things, involved in either nucleation or elongation
Journal of Chemical Physics

hal-01263103
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01263103
DOI : 10.1063/1.4940149
PUBMED : 26801045

Éditeur(s) : HAL CCSD Elsevier
Résumé : Extracting and purifying a representative fraction of bacteria from soil is necessary for the application of many techniques of microbial ecology. Here the influence of different soil types on the quantitative and qualitative recovery of bacteria by soil grinding and Nycodenz density gradient centrifugation was investigated. Three soils presenting contrasted physicochemical characteristics were used for this study. For each soil, the total (AODC: acridine orange direct count) and culturable (cfu: colony-forming units) bacterial densities were measured in three distinct fractions: (i) the primary soil, (ii) the soil pellet (soil remaining after centrifugation), and (iii) the extracted cells. The automated-ribosomal intergenic spacer analysis (A-RISA) was used to characterize the community structure directly from the DNA extracted from each fraction. The physicochemical characteristics of soils were found to influence both the efficiency of bacterial cell recovery and the representativeness of the extracted cells in term of community structures between the different fractions. Surprisingly, the most representative extracted cells were obtained from the soil exhibiting the lowest efficiency of cell recovery. Our results demonstrated that quantitative and qualitative cell recovery using Nycodenz density gradient centrifugation are not necessarily related and could be differentially biased according to soil type.
ISSN: 1164-5563

hal-01031904
https://hal.archives-ouvertes.fr/hal-01031904
DOI : 10.1016/j.ejsobi.2005.08.003

Éditeur(s) : HAL CCSD
Résumé : National audience
Objectif L’objectif était d’identifier des formes d’organisation du travail et d’étudier leur association avec les douleurs de l’épaule et le syndrome de la coiffe des rotateurs (SCR) chez les salariés, à partir des données du programme de surveillance épidémiologique des troubles musculo-squelettiques mis en œuvre dans les Pays de la Loire. Méthodes Entre 2002 et 2005, la participation volontaire de 83 médecins du travail a permis d’inclure par tirage au sort 3710 salariés lors de leur visite médicale périodique. Seize variables organisationnelles ont été recueillies par auto-questionnaire. Les symptômes de l’épaule ont été recueillis à l’aide d’un questionnaire de type nordique et le SCR a été diagnostiqué par le médecin à l’aide d’un examen clinique standardisé. Une classification ascendante hiérarchique (CAH) des variables organisationnelles puis des salariés ont permis d’identifier les différentes formes d’organisation du travail. Les associations entre les formes d’organisation du travail et les douleurs de l’épaule et le SCR ont été étudiées par des régressions logistiques ajustées sur des facteurs individuels, biomécaniques et psychosociaux. Résultats Cinq classes d’organisation du travail ont été identifiées. Une classe de salariés s’est révélée fortement exposée aux contraintes organisationnelles : – travail en équipe postée ; – polyvalence ; – faible latitude décisionnelle ; – répétitivité des tâches ; – rythme de travail imposé par : – le déplacement automatique d’un produit ou d’une pièce/la cadence automatique d’une machine, – la dépendance immédiate vis-à-vis du travail des collègues, – des normes de production ou des délais à respecter, – des contrôles ou une surveillance permanents. À l’inverse, elle était moins exposée au rythme de travail imposé par une demande extérieure (public, client) que l’ensemble de l’échantillon. Par rapport à cette classe, les salariés des quatre autres classes avaient un risque plus faible de douleurs de l’épaule au cours des 12 derniers mois (OR de 0,6 [0,5–0,7] à 0,8 [0,6–0,9]), permanentes au cours des 12 derniers mois (OR de 0,6 à 0,8 [0,5–1,0]) et au cours des 7 derniers jours (OR de 0,6 [0,4–0,9], à 0,8 [0,6–1,0]). L’association était non significative pour le SCR (p = 0,11). Conclusions L’étude a montré une association significative entre les douleurs de l’épaule et l’exposition à des contraintes organisationnelles. Ces résultats seront à confirmer à l’aide de modèles à équations structurelles
16e colloque scientifique de l’ADEREST
Lyon, France

hal-01187141
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01187141
DOI : 10.1016/j.admp.2015.04.036

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
BACKGROUND: Histoplasmosis is an endemic fungal infection in French Guiana. It is the most common AIDS-defining illness and the leading cause of AIDS-related deaths. Diagnosis is difficult, but in the past 2 decades, it has improved in this French overseas territory which offers an interesting model of Amazonian pathogen ecology. The objectives of the present study were to describe the temporal trends of incidence and mortality indicators for HIV-associated histoplasmosis in French Guiana. METHODS: A retrospective study was conducted to describe early mortality rates observed in persons diagnosed with incident cases of HIV-associated Histoplasma capsulatum var. capsulatum histoplasmosis admitted in one of the three main hospitals in French Guiana between 1992 and 2011. Early mortality was defined by death occurring within 30 days after antifungal treatment initiation. Data were collected on standardized case report forms and analysed using standard statistical methods. RESULTS: There were 124 deaths (45.3%) and 46 early deaths (16.8%) among 274 patients. Three time periods of particular interest were identified: 1992-1997, 1998-2004 and 2005-2011. The two main temporal trends were: the proportion of early deaths among annual incident histoplasmosis cases significantly declined four fold (χ2, p<0.0001) and the number of annual incident histoplasmosis cases increased three fold between 1992-1997 and 1998-2004, and subsequently stabilized. CONCLUSION: From an occasional exotic diagnosis, AIDS-related histoplasmosis became the top AIDS-defining event in French Guiana. This was accompanied by a spectacular decrease of early mortality related to histoplasmosis, consistent with North American reference center mortality rates. The present example testifies that rapid progress could be at reach if awareness increases and leads to clinical and laboratory capacity building in order to diagnose and treat this curable disease.
ISSN: 1935-2727

inserm-01065109
http://www.hal.inserm.fr/inserm-01065109
http://www.hal.inserm.fr/inserm-01065109/document
http://www.hal.inserm.fr/inserm-01065109/file/PLOS_Neglected_Tropical_Dis_2014.pdf
http://www.hal.inserm.fr/inserm-01065109/file/2014_Adenis_-_HIV-associated_histoplasmosis_early_mor.pdf

Éditeur(s) : HAL CCSD
Résumé : Pregnancy is a sensitive and critical period for the development of the child and the health of adults-to-be. The biological and physiological adaptation of the body dealing physical and psychosocial stressors during this period may exert its effects in adulthood (and possibly over several generations). This delayed toxicity presupposes intrinsically the need to study the effects of exposure to environmental risk factors during fetal life using a holistic approach involving risk factors at both the micro (individual characteristics) and the macro level (physical and psycho-social context). Given the heterogeneity of the Breton territory in which this work was conducted, we explored whether the impact of social inequalities and the physical environment (air pollution) on birth outcomes (fetal growth and the risk of prematurity) could be modified according to an urban or rural place of residence. This work was based on data collected as part of the Breton mother-child cohort PELAGIE, which had included 3421 pregnant women between 2002- 2006. The anthropometric parameters and gestational age at birth were measured by medical personnel at delivery. We defined urban and rural areas according to the definition of “urban units” from the National Census Bureau (INSEE). The annual concentrations of air pollution (nitrogen dioxide (NO2)) were estimated using a land-use regression modeled at a 100 m scale and developed as part of an European project. Finally, neighbourhood deprivation was estimated using a composite index developed at census blocks level and whose use was legitimated over both urban and rural areas. Neighbourhood deprivation was associated with an increased risk of infants with fetal growth restriction, only for women living in rural areas. We also observed an increased risk of preterm birth associated with NO2 concentrations > 16.4 μg.m-3, only among women residing in urban areas. The associations between air pollution and fetal growth, although sex-specific, did not seem on the other hand, to vary significantly according to the urban-rural spectrum. This work confirms the need to explore the influence of both social and environmental inequalities on intrauterine development, and to assess the role of place-based factors, such as the urban-rural context, in shaping these inequalities.
La grossesse est une période sensible et déterminante pour le développement de l’enfant et l’état de santé à l’âge adulte. L'adaptation biologique et physiologique de l'organisme face à des « stresseurs » physiques et psychosociaux au cours de cette période peut ainsi exercer ses effets à l'âge adulte (et possiblement sur plusieurs générations). Cette toxicité différée suppose intrinsèquement la nécessité d’étudier les conséquences des expositions environnementales au cours de la vie foetale et ce suivant une approche holistique intégrant autant les facteurs de risque à des niveaux micro (caractéristiques individuelles) et macro (expositions physiques externes et contexte psycho-social). Etant donné l’hétérogénéité du territoire breton dans lequel s’inscrit ce travail de thèse, nous avons cherché à explorer l’impact des inégalités sociales et de l’environnement physique (pollution atmosphérique) sur l’issue de la grossesse (croissance foetale et risque de prématurité) indépendamment chez des femmes enceintes résidant dans des zones urbaines et rurales. Ce travail s’est appuyé sur les données issues de la cohorte bretonne mère-enfant PELAGIE, qui a inclus 3421 femmes enceintes entre 2002- 2006. Les paramètres anthropométriques et l’âge gestationnel à la naissance ont été renseignés à l’accouchement par le personnel médical. Le contexte urbain et rural breton a été caractérisé à partir de la définition des unités urbaines de l’INSEE. Les concentrations annuelles de pollution atmosphérique (dioxyde d’azote (NO2)) ont été modélisées à une échelle de 100 m à partir d’un modèle de "land-use regression" développé à l’échelle européenne. Enfin, le niveau socio-économique des IRIS a été estimé à l’aide d’un indice de désavantage social - construit à partir des données du recensement de l’INSEE et dont la validité et l’adaptabilité à des territoires à la fois urbains et ruraux a été examinée au préalable. Nos résultats suggèrent une influence délétère d’un contexte de vie socioéconomique défavorable sur la croissance intra-utérine, spécifiquement chez les femmes résidant en milieu rural. Nous avons également observé une augmentation du risque de prématurité associée à des niveaux > 16.4 μg.m-3 de NO2 dans l’air, à l’inverse, uniquement chez les femmes résidant dans des zones urbaines. Les associations entre l’exposition à la pollution atmosphérique et les marqueurs de la croissance intra-utérine, bien que sexe-spécifiques, ne semblent en revanche pas varier sensiblement suivant le gradient urbain-rural. Ce travail confirme la nécessité d’évaluer l’influence des inégalités sociales et environnementales sur le développement intra-utérin et de considérer l’importance et le rôle du contexte de vie, notamment urbain-rural, dans la formation de ces inégalités.
https://tel.archives-ouvertes.fr/tel-01308518

NNT : 2015REN1B010
tel-01308518
https://tel.archives-ouvertes.fr/tel-01308518
https://tel.archives-ouvertes.fr/tel-01308518/document
https://tel.archives-ouvertes.fr/tel-01308518/file/BERTIN_M--lanie.pdf

Éditeur(s) : HAL CCSD Taylor & Francis
Résumé : International audience
In spite of several studies on factors affecting nitrogen (N) export in water, the spatiotemporal variability of N export is rarely addressed. This review aims at discussing the different factors involved in N export in water and the intra-annual variability of N occurrences in rivers at a watershed scale. From the analysis of the existing works some recommendations on future research work are proposed regarding (i) other N forms than nitrate being systematically considered for routine analysis or experimental studies (at least Kjheldal nitrogen), (ii) hydrologists and biogeochemists working together to better understanding of N dynamics according to water pathways, especially during “situations at risk,” (iii) water quality monitoring being reinforced both spatially and temporally, especially thanks to high frequency instrumentation, and (iv) accurate data on watersheds needed to give better explanations of N variations. We argue that a better understanding of spatiotemporal variability could greatly enhance the remediation of N export impacts, which is crucial to anticipate the impacts of global changes
ISSN: 1064-3389

hal-01195736
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01195736
DOI : 10.1080/10643389.2015.1010432