Éditeur(s) : Université de la Réunion
Résumé : The green turtle (Chelonia mydas) is an emblematic species of marine life. However, nowadays it is subject to many threats (poaching, by-catch). Even if there is deep growing measures for its protection, the green turtle still is an endangered species and it is listed in Appendix I of Washington Convention (CITES). In order to elaborate efficient conservation and management plans, perfect knowledge of green turtle biology, but also of its population structure and their characteristics, are needed. In this thesis, we have assessed genetic structure of green turtle populations in the South-Western Indian Ocean by using genetic tools. In all, 1551 tissue samples have been collected from our study zone and from our control site French Polynesia (37 samples). All kinds if individuals were sampled (except males in reproductive phase) from 15 sampling sites including nesting, foraging, and immature development site. We used both control region of mitochondrial DNA and 6 microsatellite loci to better infer maternal and paternal lineages. We identified 29 haplotypes in the South-Western Indian Ocean. They are distributed in 3 independent and highly divergent clades, including one composed with haplotypes from Atlantic Ocean. For 7 of these haplotypes, it was the first time they were detected in the study zone. Fifteen haplotypes were previously undescribed, distributed in all the 3 clades. These new haplotypes seem to be specific to the South-Western Indian Ocean, which is then an original zone. Besides, we found a high allelic richness. These results show the South-western Indian Ocean is rich and very diversified. This region plays an important role in the global diversity of the species. The South-Western Indian Ocean is one of the two contact zones presently known between the two metapopulations of green turtles (Atlantic-Mediterranean and Indo-Pacific). This contact induces a genetic cline based on CM8 (Atlantic) and C3 (Indo-Pacific) haplotype frequencies. Analysis of the microsatellite differentiation between individuals provides evidence of genetic exchanges between the two metapopulations in the region. The South-Western Indian Ocean participates to green turtle global genetic mixing. Studying the influence of several intrinsic and extrinsic factors on population structuring provides useful information for management plan elaboration. We found no significant difference between genetic structures of foraging females and males, contrary to immature turtles which seem to be organised in 'regional pools'. This organisation could be due to both immature natal homing and influence of oceanic currents. High mitochondrial differentiation of nesting females and low global microsatellite differentiation of our samples indicate male-mediated gene flow among populations of the study zone. The genetic composition of a sampling site presents no significant variation along the year, even if we could notice some trends. Nevertheless, it can be significantly different from a year to an other one. This may result from alternation of distinct populations on the same site. We noticed different evolution in 10 or 20 years of the genetic composition depending on the sampling site. Geographic distance seems not to have significant influence on population structuring concerning microsatellite markers. Nesting females of Saziley Beach (Mayotte Island, Comoros Archipelago) present genetic divergence from females nesting in the two other sampled beaches of this island. The observed population structure shows no contradiction with the organisation of oceanic currents in the South-Western Indian Ocean. Comparing the results from the two genetic markers used, we identified 8 genetic differentiated clusters of turtles in the study zone and at least 6 distinct populations. These clusters constitute 8 potential management units (MUs) which could serve as basis in the elaboration of conservation and management plans.
La tortue verte (Chelonia mydas) constitue l'un des espèces emblématiques de la vie marine, pourtant de nombreuses menaces pèsent de nos jours encore sur sa survie (braconnage, captures accidentelles). Ainsi, malgré l'essor de mesures de protection menées à travers pour sa sauvegarde, la tortue verte constitue une espèce 'en danger d'extinction' et figure dans l'Annexe I de la Convention de Washington (CITES). Afin d'élaborer des plans de gestion et de conservation qui soient efficaces, il est important d'avoir une parfaite connaissance de la biologie de la tortue verte, mais aussi de la structure de ses populations et de leurs caractéristiques. C'est dans ce cadre que s'inscrit la présente étude. L'objectif de cette étude était d'acquérir des connaissances sur la structure des populations de tortues vertes dans le sud-ouest de l'océan Indien grâce à l'utilisation de l'outil génétique. Au total, 1551 échantillons de tissu ont été collectés dans la zone d'étude et dans notre site témoin la Polynésie française (37 échantillons). Toutes les catégories d'individus ont été échantillonnées (excepté les mâles en phase de reproduction) et les 15 sites d'échantillonnage comprennent à la fois des sites de ponte, d'alimentation et de développement pour les immatures. Deux types de marqueurs ont été utilisés : la région contrôle de l'ADN mitochondrial et 6 loci microsatellites, afin d'appréhender au mieux l'apport des lignées maternelles et paternelles. Nous avons pu mettre en évidence la présence dans le sud-ouest de l'océan Indien de 29 haplotypes distincts, appartenant à trois clades fortement divergents dont l'un constitué d'haplotypes originaires de l'océan Atlantique. Parmi ces haplotypes, 7 ont été détectés pour la première fois dans la zone d'étude, et 15 autres n'ont jamais été précédemment décrits chez cette espèce. Ils sont présents dans chacun des 3 clades d'haplotypes. Ces nouveaux haplotypes semblent spécifiques à la région, et en font une zone originale. On observe par ailleurs une grande richesse allélique dans les effectifs analysés. Ces résultats montrent que le sud-ouest de l'océan Indien est une zone riche et très diversifiée. Cette région joue un rôle important dans la diversité génétique globale de l'espèce. Le sud-ouest de l'océan Indien constitue l'une des deux seules zones connues à l'heure actuelle de contact entre les deux métapopulations de tortues vertes (Atlantique-Méditerranée et Indo-Pacifique). Ce contact a entraîné la formation d'un cline génétique portant principalement sur les fréquences relatives des haplotypes CM8 (Atlantique) et C3 (Indo-Pacifique). Les résultats obtenus lors de l'analyse microsatellite de la différenciation entre les individus originaires des deux métapopulations montrent que le sud-ouest de l'océan Indien constitue une zone d'échanges génétiques entre les deux métapopulations, participant au brasage génétique de l'espèce. L'étude de facteurs, intrinsèques et extrinsèques, pouvant influencer la structuration des populations apportent de nombreuses informations qui pourraient s'avérer utiles lors de l'élaboration de plans de gestion. La structure des femelles et des mâles en alimentation ne diffère pas, contrairement à celle des immatures qui semble s'organiser en 'pools régionaux' qui seraient le fruit de l'interaction d'un comportement de philopatrie et d'une influence des courants océaniques. La forte différenciation mitochondriale des femelles en ponte et la très faible différenciation microsatellite observée à l'échelle de la région, indiquent l'existence de flux de gènes via les mâles. La composition génétique d'un site ne varie pas de manière significative au cours de l'année. Par contre, elle peut varier d'une année à l'autre, signifiant l'alternance dans certains sites de ponte de plusieurs populations distinctes. L'évolution de la composition génétique d'un groupe, au cours de 10 ou 20 ans, diffère selon le site considéré. La distance ne semble pas influencer de manière significative la structuration des populations au niveau microsatellite. Les femelles en ponte sur la plage de Saziley (Mayotte) diffèrent génétiquement de celles pondant sur les deux autres plages de l'île. La structure observée des populations est en accord avec l'organisation des courants océanique dans la région. La confrontation des résultats obtenus à partir des deux marqueurs génétiques utilisés, permet la détermination de 8 ensembles génétiquement différenciés dans la zone d'étude et l'identification d'au moins 6 populations distinctes. Ces ensembles constituent autant d'unités de gestion (MUs) potentielles qui pourront servir de base à l'élaboration de plans de gestion et de conservation.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2007/these-3532.pdf
http://archimer.ifremer.fr/doc/00000/3532/

Résumé : This report synthesizes the discussions of a workshop organized during the "Liteau II-AMP" project , a collaborative project involving scientists and MPA managers that aimed at developing diagnostic and exploratory tools for the assessment of Marine Protected Areas performance. This 2004-2006 project was funded by the Liteau program (http://www.liteau.ecologie.gouv.fr) of the French Ministry of Ecology and Sustainable Development. The workshop was organized on 30th November and 1st December at the EPHE (University of Perpignan, France). It was aimed at gathering a number of scientists and managers involved in MPA in France and in overseas French territories, in order to discuss the issue of interactions between managers and scientists in the context of MPAs. After this fruitful workshop, we felt it was useful to produce a synthesis about interactions between scientists and managers for the MPA or MPA projects present at the workshop. The topics discussed include how to interact, the degree of involvement of both sides in interactions, research versus monitoring, gaps and expectations.
Préambule : Cette synthèse s'inscrit dans le projet « Développement d'Outils Diagnostics et Exploratoires d'Aide à la Décision pour Evaluer la Performance d'Aires Marines Protégées », projet financé par le programme Lit'eau II du Ministère de l'Ecologie et du Développement Durable. L'objet de la réunion des 30 novembre et 1er décembre 2004 à l'EPHE de Perpignan était de rassembler un certain nombre de personnes impliquées dans la gestion d'Aires Marines Protégées en France et outremer, ainsi que des scientifiques concernés par la problématique des Aires Marines Protégées afin de discuter des relations et interactions entre scientifiques et gestionnaires dans ce domaine. A l'issue de cette réunion, il s'agissait d'établir un document synthétique qui ferait le point sur les interactions entre scientifiques et gestionnaires en ce qui concerne les AMP ou projets d'AMP représentés : mode de fonctionnement, degré d'implication, études plus recherche versus suivis périodiques, besoins couverts, non couverts, anticipation des évolutions en la matière. Ce document constitue une synthèse des différents éléments qui ont pu émerger des discussions de ces deux jours et des contributions -avant et après la réunion- de différents participants.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2005/rapport-6797.pdf
http://archimer.ifremer.fr/doc/00000/6797/

Éditeur(s) : HAL CCSD WILEY-BLACKWELL Wiley
Résumé : International audience
Connectivity among populations determines the dynamics and evolution of populations, and its assessment is essential in ecology in general and in conservation biology in particular. The robust basis of any ecological study is the accurate delimitation of evolutionary units, such as populations, metapopulations and species. Yet a disconnect still persists between the work of taxonomists describing species as working hypotheses and the use of species delimitation by molecular ecologists interested in describing patterns of gene flow. This problem is particularly acute in the marine environment where the inventory of biodiversity is relatively delayed, while for the past two decades, molecular studies have shown a high prevalence of cryptic species. In this study, we illustrate, based on marine case studies, how the failure to recognize boundaries of evolutionary-relevant unit leads to heavily biased estimates of connectivity. We review the conceptual framework within which species delimitation can be formalized as falsifiable hypotheses and show how connectivity studies can feed integrative taxonomic work and vice versa. Finally, we suggest strategies for spatial, temporal and phylogenetic sampling to reduce the probability of inadequately delimiting evolutionary units when engaging in connectivity studies.
ISSN: 0962-1083

hal-01218810
https://hal.archives-ouvertes.fr/hal-01218810
DOI : 10.1111/mec.13048

Éditeur(s) : Actes de colloques. Ifremer Brest [ACTES COLLOQ. IFREMER.]. 1986
Résumé : Seawater samples taken from shallow suspended particle maxima (20-57m) at or near the base of the surface mixed layer in various oceanic areas were tested for their potential to produce hydrogen (H sub(2)) gas. Results suggest that hydrogen can be bacterially produced through a fermentative process in microanaerobic niches within particulate matter. The organisms responsible for this process are ubiquitous within the temperate and tropical waters sampled. Enumeration of potential H sub(2)-producing bacteria using fluorescent antibody techniques yielded a maximum at the base of the surface mixed layer, the same depth where the greatest H sub(2) gas production potential was observed. Hydrogen-producing bacteria comprised up to 15% of the total bacterial direct count (AODC). Findings indicate that bacteria associated with shallow nepheloid layers are capable of producing gas and thus contributing to the observed supersaturated gas concentration in the marine environment.
Des échantillons d'eau de mer contenant des particules en suspension ont été prélevés en zone peu profonde (20 à 57 m) sur ou près de la couche brassée de surface en différents points de l'océan et ont été testés pour leur potentiel de production d'H2. Les résultats suggèrent que l'hydrogène peut être produit, par les bactéries, lors d'un processus fermentatif dans des microniches anaérobies de la matière particulaire. Les organismes responsables de ce processus sont ubiquistes dans les échantillons provenant des eaux tempérées el tropicales. Les numérations maximales de bactéries potentiellement productrices d'hydrocele, faites par des techniques d'anticorps fluorescents, sont obtenues à la base de la couche brassée de surface ; à cette même profondeur est observé le potentiel de production d'hydrogène le plus important. Les bactéries productrices d'hydrogène constituent jusqu'à 15 % des numérations bactériennes totales, effectuées par comptage direct (AODC). Ces observations indiquent que les bactéries associées aux couches nephéloïdes peu profondes sont capables de produire de l'hydrogène et contribuent ainsi à la sursaturation en gaz observée dans le milieu marin.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1984/acte-962.pdf
http://archimer.ifremer.fr/doc/00000/962/

Éditeur(s) : Society for General Microbiology
Résumé : A novel piezotolerant, mesophilic, facultatively anaerobic, organotrophic, polarly flagellated bacterium (strain LT13a(T)) was isolated from a deep sediment layer in the Nankai Trough (Leg 190, Ocean Drilling Program) off the coast of Japan. This organism used a wide range of organic substrates as sole carbon and energy sources: pyruvate, glutamate, succinate, fumarate, lactate, citrate, peptone and tryptone. Oxygen, nitrate, fumarate, ferric iron and cystine were used as electron acceptors. Maximal growth rates were observed at a hydrostatic pressure of 10 MPa. Hydrostatic pressure for growth was in the range 0.1-50 MPa. Predominant cellular fatty acids were 16:1 omega7c, 15: 0 iso, 16: 0 and 13: 0 iso. The G + C content of the DNA was 44.9 mol%. On the basis of 16S rRNA gene sequences, strain LT13a(T) was shown to belong to the gamma-Proteobacteria, being closely related to Shewanella putrefaciens (98%), Shewanella oneidensis (97%) and Shewanella baltica (96 %). Levels of DNA homology between strain LT13a(T) and S. putrefaciens, S. oneidensis and S. baltica were < 20 %, indicating that strain LT13a(T) represents a novel species. Genetic evidence and phenotypic characteristics showed that isolate LT13a(T) constitutes a novel species of the genus Shewanella, Because of the deep origin of the strain, the name Shewanella profunda sp. nov. is proposed, with LT13a(T) (= DSM 15900(T)-JCM 12080(T)) as the type strain.
International journal of systematic and evolutionary microbiology (1466-5026) (Society for General Microbiology), 2004-11 , Vol. 54 , N. 6 , P. 1943-1949

Droits : 2004 International Union of Microbiological Societies
http://archimer.ifremer.fr/doc/2004/publication-590.pdf
DOI:10.1099/ijs.0.03007-0
http://archimer.ifremer.fr/doc/00000/590/

Résumé : With resolution 3 067 (XXVIII), November 16th, 1973, the UN General Assembly decided the organization of a 3rd Conference on marine legislation which first session, "organization and proceedings", was held in New York City from December 3rd to December 14th, 1973 and whose second session, "in-depth questions", will be held in Caracas for 10 weeks between June 20th and August 29th, 1974. In reality, the decision dates back to a resolution 2 750 C (XXV), November 17th, 1970, and stems from a number of consultations carried out by the Secretary-General demonstrating that "the idea of a general-interest conference on marine legislation was largely supported". Why did it appear necessary to totally review marine legislation, 15 years after the Geneva Conferences of 1958 and 1960? This is what we will try to explain in analysing the causes of such an evolution and drawing its general tendencies, before focusing on the current situation at the opening of the conference and the future perspectives.
Par une résolution 3067 (XXVIII) du 16 Novembre 1973, l'Assemblée Générale des Nations Unies décidait la convocation d'une 3ème Conférence sur le droit de la mer dont la première session d'organisation et de procédure a eu lieu à New York du 3 au 14 Décembre 1973 et dont la deuxième session, "aux fins de traiter des questions de fond", se tiendra à Caracas pendant 10 semaines du 20 Juin au 29 Août 1974. En réalité, la décision de principe remonte B une résolution 2750 C (XXV) du 17 Décembre 1970, et résulte de consultations entreprises par le Secrétaire Général indiquant que "l'idée de convoquer une Conférence de portée générale sur le droit de la mer recueillait un large appui". Pourquoi est-il apparu nécessaire de procéder à une révision totale du droit de la mer, 15 ans après les Conférences de Genève de 1958 et 1960 ? C'est ce que nous allons essayer d'expliquer en analysant les causes d'une telle évolution et en dégageant les tendances qui se manifestent avant d'examiner la situation telle quel le se présente à l'ouverture de la Conférence et les perspectives d'avenir. [OCR NON CONTRÔLE]

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1974/rapport-4794.PDF
http://archimer.ifremer.fr/doc/00000/4794/

Résumé : The slides were taken on collecting trips sponsored by the William L. Bryant Foundation, where books, music and art indigenous to the regions were gathered. The are organized by geographical location.
The Frederick Street steps (known locally as the Saint Andrew's, Hill Crest, or Blackbeard's Steps) were carved from stone in 1793. The steps were the original home for the cenotaph before its relocation to the Garden of Remembrance. In the background is the Trinity Methodist Church’s roof and Saint Andrew’s Presbyterian Church’s bell tower. Slide labeled Bryant Nassau Mar .'46, In front of Government House where the Windsor's lived.
Bahamas -- North America -- Nassau, New Providence Island

Droits : All rights to images are held by the respective holding institution. This image is posted publicly for non-profit educational uses, excluding printed publication. For permission to reproduce images and/or for copyright information contact Special Collections & University Archives, University of Central Florida Libraries, Orlando, FL 32816 phone (407) 823-2576, email: speccoll@mail.ucf.edu
CFM1972_01a
Sheet 16:7
http://ufdc.ufl.edu/AA00029448/00001

Éditeur(s) : HAL CCSD Royal Society, The
Résumé : International audience
Determining the conditions under which populations may persist requires accurate estimates of demographic parameters, including immigration, local reproductive success, and mortality rates. In marine populations, empirical estimates of these parameters are rare, due at least in part to the pelagic dispersal stage common to most marine organisms. Here, we evaluate population persistence and turnover for a population of orange clownfish, Amphiprion percula, at Kimbe Island in Papua New Guinea. All fish in the population were sampled and genotyped on five occasions at 2-year intervals spanning eight years. The genetic data enabled estimates of reproductive success retained in the same population (reproductive success to self-recruitment), reproductive success exported to other subpopulations (reproductive success to local connectivity), and immigration and mortality rates of sub-adults and adults. Approximately 50% of the recruits were assigned to parents from the Kimbe Island population and this was stable through the sampling period. Stability in the proportion of local and immigrant settlers is likely due to: low annual mortality rates and stable egg production rates, and the short larval stages and sensory capacities of reef fish larvae. Biannual mortality rates ranged from 0.09 to 0.55 and varied significantly spatially. We used these data to parametrize a model that estimated the probability of the Kimbe Island population persisting in the absence of immigration. The Kimbe Island population was found to persist without significant immigration. Model results suggest the island population persists because the largest of the subpopulations are maintained due to having low mortality and high self-recruitment rates. Our results enable managers to appropriately target and scale actions to maximize persistence likelihood as disturbance frequencies increase.
ISSN: 0962-8452

hal-01239322
https://hal-univ-perp.archives-ouvertes.fr/hal-01239322
DOI : 10.1098/rspb.2015.1311

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The marine Messinian deposits of Tunisia cover a narrow littoral strip some 300 km long between the northern Bizerte and Cap Bon areas and the central-eastern Sahel region. Litho- and biofacies analysis of six stratigraphic sections reveals the distinctive features of these deposits.;The lower Messinian deposits are characterized by ubiquitous siliciclastics and abundant oolitic/bioclastic limestones organized in an eastward facing ramp. Westward (landward), this ramp changes into coastal lagoons, sometimes containing evaporites. Eastward, the ramp passes to the reefal Pelagian Platform extending as far as Lampedusa.;Two main sedimentary cycles are distinguished: 1) an early Messinian siliciclastic retrogradational then oolitic/bioclastic progradational cycle (Beni Khiar Formation and lower Oued bel Khedim Formation): 2) a late Messinian brackish to continental cycle that probably accumulated in rapidly subsiding lagoons (Cued el Bir Formation and upper Oued bel Khedim Formation). The Tunisian early Messinian cycle is partly eustatically controlled, but the late Messinian cycle cannot be confidently correlated to other well-known Messinian series because of tectonic movements.;The lower Messinian deposits of Tunisia are also characterized by abundant suspension-feeding organisms (molluscs and bryozoans) and rare corals, calcareous algae, echinoids, and larger benthic foraminifers. The proposed palaeoenvironmental model shows that the lower Messinian ramp of Tunisia was located on a current-protected margin and subjected to continent-derived sediment and nutrient supply. Eastward, nutrient influx diminished and a shallow-water isolated carbonate platform with coralgal facies developed between the western and the eastern Mediterranean basins. The main hydrological connection between these two basins occurred through a narrow seaway situated to the northeast of the Pelagian Platform, south of Sicily and Malta.
ISSN: 0031-0182

hal-00475583
https://hal.archives-ouvertes.fr/hal-00475583
DOI : 10.1016/j.palaeo.2009.10.028

Éditeur(s) : Université de Paris 7
Résumé : The Seine estuary and its adjacent region Pays de Caux are two significant sources of mercury for coastal marine environments. It is carried through fluvial means for the Seine bay and through karstic fresh water emergences for Pays de Caux's coastal area. Mercury cycle in the Seine estuary and bay is affected by additional anthropical activities. The estuary's maximal turbidity area acts like a trap and a chemical reactor for fluvial mercury. Within this area, we can confirm: (i) the non conservative behaviour of dissolved mercury; (ii) mercury enrichment of particles when comparing the Seine's and marine environment and we suggest mercury particle redistribution from the organic fraction to the oxyhydroxydes fraction. A large fraction of mercury is exported in this state towards coastal areas. Mercury reduction in surface coastal waters and its atmospherical recycling are major phenomena. Photoreduction and biological reduction play quantitative roles equivalent to total mercury recycling via the atmosphere corresponding approximately to 30 % of fluvial exchanges. We are demonstrating that reactive forms of mercury are supporting photoreduction. Mercury behaviour within Pays de Caux's karst depends of the hydrogeological context of the system (time and flow speed, turbidity, flow); regardless of the speciation and/or partition in underground waters, the total amount of mercury in intertidal areas is quantitatively the same as in the Seine estuary. Mercury brought through intertidal emergences (karstic exudations) is not « filtered » by a maximal turbidity area and is more widely bio-available for mussels than in the Seine estuary. Even being free from growth factor influences through simple models, mussels found in Pays de Caux still show one of the highest mercury contamination on the French coast; for the first time this places the emphasis on how much mercury is brought from underground waters to the coastal environment. Surface complexation modelisation tests are able to reproduce the major part of mercury partition in the Seine estuary and bay if a very low mercury exchangeable fraction and minimum complexation parameters are taken into account; thermodynamic calculations also suggest that a strong or highly concentrated « dissolved » ligand must be present in the water in order to compete with chlorocomplex formations and explain our measures.
L'estuaire de la Seine et la région adjacente du Pays de Caux sont deux sources significatives en mercure pour le milieu marin côtier. Les apports sont d'une part fluviatiles en ce qui concerne la Baie de Seine et karstiques via des émergences d'eau douce pour la zone côtière du Pays de Caux. Le cycle du mercure en estuaire et baie de Seine est perturbé par les apports liés aux activités anthropiques. La zone de turbidité maximum de l'estuaire joue le rôle de piège et de réacteur chimique pour le mercure fluviatile. Au sein de cette zone, nous mettons en évidence : (i) un comportement non-conservatif du mercure dissous; (ii) un enrichissement en mercure des particules par rapport à celles de la Seine et du milieu marin et suggérons une redistribution du mercure particulaire de la fraction organique vers la fraction oxyhydroxydes. C'est sous cette forme qu'une fraction importante du mercure est exportée vers la zone côtière. La réduction du mercure dans les eaux côtières de surface et son recyclage atmosphérique sont des phénomènes majeurs. En effet, la photoréduction et la réduction biologique jouent des rôles quantitativement équivalents avec un recyclage total du mercure via l'atmosphère correspondant à environ 30% des apports fluviatiles. Nous montrons que les formes réactives du mercure constituent le substrat de la photoréduction. Le comportement du mercure au sein du karst du Pays de Caux dépend du contexte hydrogéologiques du système (temps et vitesse de circulation, turbidité, débit) ; quelle que soit la spéciation et/ou la partition dans les eaux souterraines, l'apport en mercure total à la zone intertidale est quantitativement du même ordre de grandeur que les apports de la Seine. Le mercure apporté par les émergences intertidales (exutoires karstiques) n'est pas « filtré » par une zone de turbidité maximale et se trouve plus largement biodisponible pour les moules qu'en estuaire de Seine. En s'affranchissant, par des modèles simples, de l'influences des facteurs de croissance, les moules du Pays de Caux affichent toujours une contamination par le mercure parmi les plus élevées du littoral français; ceci met pour la première fois l'emphase sur l'importance de l'apport en mercure par des eaux souterraines dans un environnement côtier. Les essais de modélisation de complexation de surface reproduisent la majeure partie de la partition du mercure dans l'estuaire et la baie de Seine si l'on tient compte d'une fraction échangeable en mercure très faible et de paramètres de complexation minimums ; les calculs thermodynamiques suggèrent aussi qu'un ligand « dissous » fort ou présent à de fortes concentrations doit être présent dans l'eau afin d'entrer en compétition avec la formation de chlorocomplexes et expliquer nos mesures.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2001/these-1842.pdf
http://archimer.ifremer.fr/doc/00000/1842/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Background : Biological communities are normally composed of a few abundant and many rare species. This pattern is particularly prominent in microbial communities, in which most constituent taxa are usually extremely rare. Although abundant and rare subcommunities may present intrinsic characteristics that could be crucial for understanding community dynamics and ecosystem functioning, microbiologists normally do not differentiate between them. Here, we investigate abundant and rare subcommunities of marine microbial eukaryotes, a crucial group of organisms that remains among the least-explored biodiversity components of the biosphere. We surveyed surface waters of six separate coastal locations in Europe, independently considering the picoplankton, nanoplankton, and microplankton/mesoplankton organismal size fractions.Results : Deep Illumina sequencing of the 18S rRNA indicated that the abundant regional community was mostly structured by organismal size fraction, whereas the rare regional community was mainly structured by geographic origin. However, some abundant and rare taxa presented similar biogeography, pointing to spatiotemporal structure in the rare microeukaryote biosphere. Abundant and rare subcommunities presented regular proportions across samples, indicating similar species-abundance distributions despite taxonomic compositional variation. Several taxa were abundant in one location and rare in other locations, suggesting large oscillations in abundance. The substantial amount of metabolically active lineages found in the rare biosphere suggests that this subcommunity constitutes a diversity reservoir that can respond rapidly to environmental change.Conclusions : We propose that marine planktonic microeukaryote assemblages incorporate dynamic and metabolically active abundant and rare subcommunities, with contrasting structuring patterns but fairly regular proportions, across space and time.
ISSN: 0960-9822

hal-01149637
http://hal.upmc.fr/hal-01149637
http://hal.upmc.fr/hal-01149637/document
http://hal.upmc.fr/hal-01149637/file/Logares_et_al_CurrentBiol_accepted.pdf
DOI : 10.1016/j.cub.2014.02.050

Éditeur(s) : HAL CCSD PeerJ
Résumé : International audience
Acoustic recording has been recognized as a valuable tool for non-intrusive monitoring of the marine environment, complementing traditional visual surveys. Acoustic surveys conducted on coral ecosystems have so far been restricted to barrier reefs and to shallow depths (10–30 m). Since they may provide refuge for coral reef organisms, the monitoring of outer reef slopes and describing of the soundscapes of deeper environment could provide insights into the characteristics of different biotopes of coral ecosystems. In this study, the acoustic features of four different habitats, with different topographies and substrates, located at different depths from 10 to 100 m, were recorded during daytime on the outer reef slope of the north Coast of Moorea Island (French Polynesia). Barrier reefs appeared to be the noisiest habitats whereas the average sound levels at other habitats decreased with their distance from the reef and with increasing depth. However, sound levels were higher than expected by propagation models, supporting that these habitats possess their own sound sources. While reef sounds are known to attract marine larvae, sounds from deeper habitats may then also have a non-negligible attractive potential, coming into play before the reef itself.
ISSN: 2167-8359

Droits : http://creativecommons.org/licenses/by/
hal-01654685
http://hal.upmc.fr/hal-01654685
http://hal.upmc.fr/hal-01654685/document
http://hal.upmc.fr/hal-01654685/file/peerj-4019.pdf
DOI : 10.7717/peerj.4019

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Background information. Marine nematodes belonging to the Stilbonematidae (Desmodoridae) family are described as living in obligatory association with sulfur-oxidizing chemoautotrophic ectosymbionts. The symbiotic bacteria carrying out this chemosynthesis should contain elemental sulfur in periplasmic granules as sulfur granules of chemoautotrophic endosymbionts described in various marine invertebrates. Results. Based on TEM analyses, extracellular bacteria surrounding Eubostrichus dianae possess these spherical periplasmic granules. Few investigative techniques can be used to identify elemental sulfur S8 such as EDXS (energy dispersive X-ray spectroscopy) and EELS (electron energy loss spectroscopy) associated with cryo-fixation of the sample to avoid sulfur loss. These techniques are time consuming, expensive and require technical skills. Raman microspectrometry applied to the analysis of E. dianae allowed us to detect elemental sulfur S8 and confirmed the location of these sulfur clusters in the bacterial coat. In the same way, Raman spectrometry was positively applied to the endosymbiotic bivalve Codakia orbicularis, suggesting that this technique can be used to characterize sulfur in ecto- as well as in endo-symbiotic sulfur-oxidizing bacteria. Conclusions. As Raman spectrometry can be used on living organisms (without preliminary fixation) without sample damage and preserving the molecular structure of the sulfur (denatured during chemical fixation) it represents a very well-adapted investigative tool for biologists. This technique therefore permits us to detect quickly and easily (in a few seconds and on entire living animals) the presence of sulfur compounds in the symbiotic nematode.
ISSN: 0248-4900

hal-00753017
https://hal.univ-antilles.fr/hal-00753017

Résumé : The slides were taken on collecting trips sponsored by the William L. Bryant Foundation, where books, music and art indigenous to the regions were gathered. The are organized by geographical location.
Woman and child leaving a residential house. Slide labeled Nassau Mar .'46.
Bahamas -- North America -- Nassau, New Providence Island

Droits : All rights to images are held by the respective holding institution. This image is posted publicly for non-profit educational uses, excluding printed publication. For permission to reproduce images and/or for copyright information contact Special Collections & University Archives, University of Central Florida Libraries, Orlando, FL 32816 phone (407) 823-2576, email: speccoll@mail.ucf.edu
CFM1972_01a
Sheet 15:19
http://ufdc.ufl.edu/AA00029417/00001

Éditeur(s) : Elsevier Sci Ltd
Résumé : Several marine geophysical data and piston-coring surveys acquired during the last decade allow one to better understand the close dynamic interactions between the sand-rich Orinoco turbidite system and the compressional structures of the Barbados prism. These interactions have been active since Eocene time as illustrated by the study of outcrops onshore Barbados Island. Because of strong morphologic and tectonic control in the east-Caribbean active margin, the present-day Orinoco turbiditic pattern system does not exhibit a classic fan geometry. The sea-floor geometry between the slope of the front of the Barbados prism and the slope of the South-American margin induces the convergence of the turbidite channels toward the abyssal plain, at the front of the accretionary prism. Also, whereas in most passive margins the turbidite systems are organized upstream to downstream as canyon, channel-levee and lobes, here, due to the tectonic control, the sedimentary system is organized upstream to downstream as channel-levee, canyons and channelized lobes. Indeed, at the edge of the Orinoco platform, the system has multiple sources with several distributaries and downstream the channel courses are complex with frequent convergences or divergences that are emphasized by the effects of the undulating seafloor tectonic morphologies associated with active thrust tectonics and mud volcanism. On top of the accretionary prism, turbidite sediments are filling transported piggy-back basins whose timing of sedimentation vs. deformation is complex. While erosion processes are almost absent on the highly subsiding Orinoco platform and in the upper part of the turbidite system, they develop mostly between 2000 and 4000 m of water depth, above the compressional structures of the Barbados prism (canyons up to 3 km wide and 300 m deep). In the abyssal plain, the main turbiditic channel develops toward the east and connects with the Vidal mid-Atlantic channel. The sediments transported in this channel are filling several elongated basins linked with fracture zones (notably the Barracuda Basin), and finally end their course in the Puerto-Rico trench, the deepest morphologic depression of the region. Piston-cores have demonstrated that turbidite sediments above the accretionary prism and in the abyssal plain are mostly coarse sandy deposits covered by recent pelagic planktonic-rich sediments, which corresponds to slower sand deposition during the post-glacial sea level rise. Numerical stratigraphic modelling suggests that during the last glacial event, the main depocentres were located above the tectonic prism and in the abyssal plain, at the front of the prism and that, during the Holocene eustatic rise, a large accommodation space formed on the shelf confining sedimentation mostly on the Orinoco deltaic platform and producing a starvation downstream in the turbidite system.
Marine And Petroleum Geology (0264-8172) (Elsevier Sci Ltd), 2015-06 , Vol. 64 , P. 76-103

Droits : 2015 Elsevier Ltd. All rights reserved.
http://archimer.ifremer.fr/doc/00252/36373/34913.pdf
DOI:10.1016/j.marpetgeo.2014.12.015
http://archimer.ifremer.fr/doc/00252/36373/

Résumé : Chapters in Volume 1: - Law of the sea and international straits - Trends in the French merchant fleet - International shipping - Safety and rescue at sea, the case of yachting - Marine research and economic development - The respective roles played at sea by the state and local authorities - Social trends in populations linked to the sea: commercial seafarers - Future perspectives for marine leisure activities - French ports, outlook for the year 2000 Chapters in Volume 2: - European organisation in terms of seafood - The role of the sea in the development of the DOM/TOM (French overseas départements and territories) - France's international policy and naval and maritime resources - Naval strategies of the major powers - Europe's security in the Mediterranean, the example of the Balkans - Nuclear-weapon-free areas and peace zones at sea - France and geopolitical balances in the South Pacific - The North-west of the Indian Ocean and the world energy supply
Rapports des dix-sept groupes de séminaires de la promotion "Liberté, égalité, fraternité" de l'Ecole nationale d'administration, février à juillet 1988: Chapitres du Tome1: - Le droit de la mer et les détroits internationaux - L'évolution de la flotte de commerce française - Les transports maritimes internationaux - Sécurité et sauvetage en mer, le cas de la plaisance - Recherche en mer et développement économique - Les rôles respectifs de l'État et des collectivités locales en mer - L'évolution sociale des populations attachées à la mer : les marins de commerce - Les perspectives d'avenir des loisirs de la mer - Les ports français, perspectives pour l'an 2000 Chapitres du Tome2: - Organisation européenne en matière de produit de la mer - Le rôle de la mer dans le développement des DOM/TOM - La politique internationale de la France et les moyens navals et maritimes - Les stratégies navales des grandes puissances - La sécurité de l'Europe en Méditerranée, l'exemple des Balkans - Les zones exemptes d'armes nucléaires et les zones de paix en mer - La France et les équilibres géopolitiques dans le Pacifique Sud - Le Nord-Ouest de l'océan Indien et l'approvisionnement énergétique mondial

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1988/rapport-1027.pdf
http://archimer.ifremer.fr/doc/1988/sup-1027.pdf
http://archimer.ifremer.fr/doc/00000/1027/

Éditeur(s) : ISTPM
Résumé : The effect of the 2 pesticides most frequently used against mosquitoes was tested on a number of marine organisms. Growth inhibition was tested using Phaeodactylum tricornutum and Gyrosigma spencer (algae). To 0.5 ml of culture inoculum containing similar to 100000 cells in exponential growth phase, 9.5 ml of insecticide in varying concentrations were added and the growth was recorded every 48 hour; LG sub(50) was determined. Muscular activity and filtration rate of Crassostrea angulata were tested. The acute toxicity was tested using 4 species of gastropods, 2 lamellibranchs, 5 crustaceans, 1 coelenterate and 3 fishes; the species used were: Gibbula umbilicalis, Purpura lapillus, Littorina littorea, Patella vulgata, Mytilus edulis, Cardium edule, Artemia salina, Clinabarius misanthropus, Carcinus maenas, Crangon crangon, Palaemonetes varians, Actinia equina, Gasterosteus aculeatus, Pomatoschistus minutus and Anguilla anguilla. The LD sub(50) was determined for each concentration at intervals of 48 hour and 96 hour. It was noted that Abate was distinctly less toxic than Fenitrothion and that the crustaceans were extremely sensitive to Fenitrothion; a marginal security was found to exist in the oysters between the doses used in practice and those used in the test.
Revue des Travaux de l'Institut des Pêches Maritimes (0035-2276) (ISTPM), 1973-03 , Vol. 37 , N. 1 , P. 137-144

Droits : Ifremer
http://archimer.ifremer.fr/doc/1973/publication-2229.pdf
http://archimer.ifremer.fr/doc/00000/2229/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Sponges are a rich source for investigation of bioactive small molecules. They have been mostly investigated for the search of new pharmacological models or therapeutic agents for the treatment of human diseases. Micro-organisms can also represent a virulent pathogen for marine invertebrates such as sponges, which need to protect themselves against these microbes. Sponges' self defence mechanisms involving dialogue molecules thus represent a pertinent research track for potent anti-infective and anti-biofilm activities such as quorum sensing inhibitors (QSIs). The investigation of the QSI crude extract of Leucetta chagosensis Dendy, 1863 led to the isolation of three new alkaloids, isonaamine D, di-isonaamidine A and leucettamine D, along with the known isonaamine A and isonaamidine A. Isonaamidine A and isonaamine D were identified as inhibitors of the three quorum sensing pathways of Vibrio harveyi (CAI-1, AI-2 and harveyi auto inducer), but isonaamidine A displayed the strongest activity on AI-2 biosensor. Both compounds are new examples of natural QSIs of V. harveyi. These results outline the importance of these secondary metabolites for their producing organisms themselves in their natural environment, as well as the potential of the marine resource for aquaculture needs.
ISSN: 0266-8254

hal-01684926
https://hal.archives-ouvertes.fr/hal-01684926
DOI : 10.1111/lam.12461
PUBMED : 26138555

Éditeur(s) : HAL CCSD
Résumé : Juin 2003
Dans le contexte actuel de mondialisation, de changement climatique et de forte anthropisation de la biosphère, les Petites Antilles s'érigent en monde marginal ou encore en anti-monde. Fracturées du point de vue politique, économique, linguistique et à certains égards culturel, ces territoires insulaires du Bassin caraïbe recèlent de richesses environnementales (physiques, écosystèmiques et paysagères). Comme partout ailleurs dans le monde humanisé, la survie de ces sociétés implique le rétablissement des grands équilibres écologiques consubstantiels à une articulation efficiente entre le naturel, l'urbain et l'agricole. Compte tenu de la pression démographique, variable d'une île à l'autre, la pérennité des écosystèmes en covariance avec un développement économique profitant au plus grand nombre ne peut se concevoir à l'échelle insulaire. Il semble judicieux d'imaginer un développement à l'échelle de l'archipel basé sur la complémentarité, puisque au sein de chaque composante les diverses ressources biologiques terrestres et marines sont insuffisantes pour assurer une autosuffisance en termes de produits de premières nécessités et d'énergie. Le développement des Petites Antilles s'il doit être durable et prendre comme ossature les directives de Rio (Brésil, 1992) et de Johannesburg (Afrique du Sud, 2002), il devra s'inscrire dans une gestion administrative, scientifique, technique et agricole commune dans le cadre d'une Caraïbe fonctionnellement unifiée. A l'unité floristique, faunistique et biocénotique doivent correspondre des stratégies et donc des politiques, similaires mais diversifiées, d'utilisation des ressources abiotiques (énergie éolienne, hydroélectrique et photovoltaïque) et biotiques (écosystèmes terrestres et marins, flore, faune, sols). Malheureusement dans le présent, la compartimentation économique et politique de la Caraïbe rend ces propos profondément utopiques. Néanmoins dans le futur la survie des peuples des Petites Antilles, impliquera un développement durable signifié par des rapports équilibrés entre hommes et milieux.
–––––
In the nowadays context of "globalization", climatic variation and great anthropization of the biosphere, the Lesser Antilles appear as a marginal world. In a political point of view, those islands offer a greatly distinct and fractured image. The same fact can also be observed in an economic, linguistic and, in a certain measure, cultural perspective. Despite of such a statement, those territories of the Caribbean basin keep economic and landscape resources whom survival depends on the re-establishment of the great ecologic structures implying a productive articulation between the natural, the urban and the agricultural. It seems pertinent to imagine a development on the level of the archipelago based upon complementarity since each constituent presents a limited number of earth and marine biologic reserves which do not guarantee an autosubsistance in energy and first nessecity productivity. A lasting development of the Lesser Antilles supposes a necessary and commun administrative, scientific, technical and agricultural management within the setting of a Caribbean functionally unified. Facing the biocenotic unity, a useful strategy, based on a similar and diversified organization in the exploitation of biophisic resources, must be erected. Such statements could be considered as utopic, regarding the situation of politic and economic division in the Caribbean nowadays. However, in the future, the survival of those insular societies will imply a lasting development lying upon an efficient relationship between Man and environment.
https://halshs.archives-ouvertes.fr/halshs-00003054

Droits : info:eu-repo/semantics/OpenAccess
halshs-00003054
https://halshs.archives-ouvertes.fr/halshs-00003054
https://halshs.archives-ouvertes.fr/halshs-00003054/document
https://halshs.archives-ouvertes.fr/halshs-00003054/file/Devpt-durable_JOSEPH-PHILIPPE.pdf

Éditeur(s) : HAL CCSD Cushman Foundation for Foraminiferal Research
Résumé : International audience
Benthic foraminifera are heterotrophic protists that utilize different trophic mechanisms and nutritional resources. They exhibit a wide range of trophic behaviours: selective (grazing) and indiscriminate herbivory, symbiosis, carnivory, parasitism, uptake of dissolved organic matter, passive suspension feeding and, most commonly, deposit feeding. The benthic foraminifera Ammonia tepida, previously known as an herbivore, fed as a carnivore in laboratory experiments where mobile metazoans were provided. We observed predation on the three types of metazoans provided: nematodes, copepods, and a larval gastropod. This foraminifera used its pseudopodial network to entrap the invertebrates, which were then stripped of their soft internal tissues within 24 hours. Our experiments are the first to demonstrate that Ammonia tepida, despite its limited motility, is able to utilize larger mobile animals as a food source. The great abundance of small metazoans in most marine environments suggests that they are a food source for foraminifera. Further study of foraminiferal feeding strategies will enhance our understanding of their role in marine communities.
ISSN: 0096-1191

hal-01248040
https://hal.archives-ouvertes.fr/hal-01248040
https://hal.archives-ouvertes.fr/hal-01248040/document
https://hal.archives-ouvertes.fr/hal-01248040/file/dupuy%20et%20al%202010.pdf