Éditeur(s) : HAL CCSD Elsevier
Résumé : We use a triangular representation of the plunges of P, B, and Taxes to compare the different ways tectonic regime is inferred from earthquake focal mechanisms in recent works. We argue that P, B, and Taxes provide a reasonable estimate of principal stress directions when faulting is close to Andersonian conditions, and that this can be estimated from the location on a triangular diagram. We analyze the geometrical relationship between the plunges of P, B, and Taxes on one hand, and the rake of slip and dip of nodal planes on the other hand. We show that the rake and dip level curves correspond to trajectories of the vertical direction along great and small circles with respect to the frame of the P, B. and Taxes. This shows that dip-slip faulting is compatible with vertical P or Taxes, but does not require it, and instead requires horizontal B axes. It also shows that strike-slip faulting does not require vertical B axes, but P and Taxes with equal plunges. This also reveals that focal mechanisms where P, B, and Taxes all have moderate plunge correspond to two very different types of nodal planes: a steeply dipping one with oblique slip and a moderately dipping one with strike-slip. Seismically active and moderately dipping strike-slip faults are to be found among these events.
ISSN: 0040-1951

hal-00486367
https://hal.archives-ouvertes.fr/hal-00486367
DOI : 10.1016/j.tecto.2009.03.006

Éditeur(s) : HAL CCSD Ferrata Storti Foundation
Résumé : International audience
BACKGROUND: Abnormal interactions between red blood cells, leukocytes and endothelial cells play a critical role in the occurrence of the painful vaso-occlusive crises associated with sickle cell disease. We investigated the interaction between circulating leukocytes and red blood cells which could lead to aggregate formation, enhancing the incidence of vaso-occlusive crises. DESIGN AND METHODS: Blood samples from patients with sickle cell disease (n=25) and healthy subjects (n=5) were analyzed by imaging and classical flow cytometry after density gradient separation. The identity of the cells in the peripheral blood mononuclear cell layer was determined using antibodies directed specifically against white (anti-CD45) or red (anti-glycophorin A) blood cells. RESULTS: Aggregates between red blood cells and peripheral blood mononuclear cells were visualized in whole blood from patients with sickle cell disease. The aggregation rate was 10-fold higher in these patients than in control subjects. Both mature red blood cells and reticulocytes were involved in these aggregates through their interaction with mononuclear cells, mainly with monocytes. The size of the aggregates was variable, with one mononuclear cell binding to one, two or several red blood cells. Erythroid Lu/basal cell adhesion molecule and α(4)β(1) integrin were involved in aggregate formation. The aggregation rate was lower in patients treated with hydroxycarbamide than in untreated patients. CONCLUSIONS: Our study gives visual evidence of the existence of circulating red blood cell-peripheral blood mononuclear cell aggregates in patients with sickle cell disease and shows that these aggregates are decreased during hydroxycarbamide treatment. Our results strongly suggest that erythroid Lu/basal cell adhesion molecule proteins are implicated in these aggregates through their interaction with α(4)β(1) integrin on peripheral blood mononuclear cells.
ISSN: 0390-6078

inserm-00821120
http://www.hal.inserm.fr/inserm-00821120
http://www.hal.inserm.fr/inserm-00821120/document
http://www.hal.inserm.fr/inserm-00821120/file/1841.full.pdf
DOI : 10.3324/haematol.2010.026294

Éditeur(s) : HAL CCSD
Résumé : National audience
La Zone Nord-Pyrénéenne (ZNP) résulte de l’inversion debassins albo-cénomaniens ouverts entre les plaques Europe etIbérie. Le manteau subcontinental a été exhumé dans le fond decertains de ces bassins et la couverture sédimentaire mésozoïquepré-rift, désolidarisée du soubassement paléozoïque, est venue localementen contact tectonique avec les péridotites. Ceci faitde la ZNP un analogue pour l’étude des marges continentalespassives à manteau exhumé. L’extension crustale s’est produiteen régime thermique chaud comme le montre le métamorphismecrétacé des sédiments pré-rift. Les Chaînons Béarnais (PyrénéesOccidentales) représentent un témoin peu inversé de ce type demarge chaude et sont donc propices à l’étude des modalités del’amincissement crustal dans un tel système. Les analyses detempératures par spectrométrie Raman réalisées sur la couverturesédimentaire aux abords du manteau (Saraillé, Urdach, Turon dela Técouère), montrent que la totalité du système a été soumis àdes températures maximales variant de 253C à 482C. Le contacttectonique majeur entre les sédiments pré-rift décollés et lemanteau est une zone d’intense circulation de fluides avec formationde roches métasomatiques à talc+chlorite+pyrite dans lesconditions du faciès schistes verts. La géochimie isotopique (O, C,Sr) et les inclusions fluides triphasées montrent une circulation desaumures chaudes (~200C), à travers toute la couverture sédimentairedans les derniers stades de l’exhumation du manteau.Nous montrons pour la première fois que pendant l’exhumationdes péridotites : (1) les sédiments pré-rift ont subi un amincissementsyn-métamorphique avec génèse d’une foliation S0/S1 et,(2) le socle paléozoïque a été réduit à de fines lentilles tectoniquesdéformées ductilement et restées adhérentes au manteau. Ainsi, larhéologie de la croûte supérieure durant l’amincissement est contrôléeen grande partie par la présence d’une couverture sédimentairepré- et syn-rift épaisse décollée jouant le rôle d’un couverclethermique efficace. Ces nouvelles données mettent en avant le caractèrede marge passive distale chaude de la ZNP. Cela constitueun élément important pour la compréhension des mécanismes del’amincissement crustal en contexte d’exhumation du manteau etses conséquences comme héritage structural lors de l’inversion tectoniquedes bassins.
RST 2016, livre des résumés
Caen, France

insu-01387892
https://hal-insu.archives-ouvertes.fr/insu-01387892

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : The south-west lagoon of New Caledonia is a wide semi-open coral reef lagoon bounded by an intertidal barrier reef and bisected by numerous deep inlets. This paper synthesizes findings from the 2000-2008 French National Program EC2CO-PNEC relative to the circulation and the transport of suspended particles in this lagoon. Numerical model development (hydrodynamic, fine suspended sediment transport, wind-wave, small-scale atmospheric circulation) allowed the determination of circulation patterns in the lagoon and the charting of residence time, the later of which has been recently used in a series of ecological studies. Topical studies based on field measurements permitted the parameterisation of wave set-up induced by the swell breaking on the reef barrier and the validation of a wind-wave model in a fetch-limited environment. The analysis of spatial and temporal variability of suspended matter concentration over short and long time-scales, the measurement of grain size distribution and the density of suspended matter (1.27 kg 1(-1)), and the estimation of erodibility of heterogeneous (sand/mud, terrigenous/biogenic) soft bottoms was also conducted. Aggregates were shown to be more abundant near or around reefs and a possible biological influence on this aggregation is discussed. Optical measurements enabled the quantification of suspended matter either in situ (monochromatic measurements) or remotely (surface spectral measurements and satellite observations) and provided indirect calibration and validation of a suspended sediment transport model. The processes that warrant further investigation in order to improve our knowledge of circulation and suspended sediment transport in the New Caledonia lagoon as well as in other coral reef areas are discussed, as are the relevance and reliability of the numerical models for this endeavour.
Marine Pollution Bulletin (0025-326X) (Pergamon-elsevier Science Ltd), 2010 , Vol. 61 , N. 7-12 , P. 269-296

Droits : 2010 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/00014/12526/9401.pdf
DOI:10.1016/j.marpolbul.2010.06.023
http://archimer.ifremer.fr/doc/00014/12526/

Éditeur(s) : Taylor & Francis Ltd
Résumé : A new benthic phototrophic dinoflagellate is described from sediments of a tropical marine cove at Martinique Island and its micromorphology is studied by means of light and electron microscopy. The cell contains small golden-brown chloroplasts and the oval nucleus is posterior. It is laterally compressed, almost circular in shape when viewed laterally. It consists of a small epitheca tilted toward the right lateral side and a larger hypotheca. In the left view, the cingulum is more anterior and the epitheca is reduced. The cingulum is displaced and left-handed. This organism is peculiar in having no apical pore and its thecal plate arrangement is 2 ' 1a 7 '' 5c 3s 5 ''' 1 ''''. The plates are smooth with small groups of pores scattered on their surface. An area with 60-80 densely arranged pores is found near the centre of the 2 ''' plate, on the left lateral side. Morphologically, these features are different from all other laterally compressed benthic genera. In addition, molecular genetic sequences of SSU and partial LSU form a distinct and well-supported clade among dinoflagellates and support the erection of a new genus. However, molecular phylogenies inferred from ribosomal genes failed to confirm any clear relationship with other benthic taxa and affinity with other laterally compressed dinoflagellates has not been demonstrated. Hence, the taxonomic affinity of Madanidinium loirii with a defined order and family is unclear at the moment.
European Journal Of Phycology (0967-0262) (Taylor & Francis Ltd), 2014-04 , Vol. 49 , N. 2 , P. 165-178

Droits : 2014 British Phycological Society
http://archimer.ifremer.fr/doc/00195/30622/29458.pdf
DOI:10.1080/09670262.2014.898797
http://archimer.ifremer.fr/doc/00195/30622/

Éditeur(s) : Ecole nationale supérieure agronomique de Rennes
Résumé : Describe and gain understanding on fluctuations in animal population over time and space is a central goal of population ecology. This is also crucial to ensure the sustainable management of exploited resources, particularly those with complex population dynamics such as the bluefin tuna. The goal of this work is to collect bluefin tuna catches from the ancestral Mediterranean and Atlantic trap fisheries to (i) characterise long-term fluctuations in bluefin tuna population migrating in the Mediterranean, (ii) analyse their causes et (iii) assess their implications for fisheries management. The bluefin tuna main biological and ecological characteristics are first detailed. Then, the first part presents the trap fishery, and the process of collect and validation of the historical catches. This leads to develop a data base of 54 time-series more than 20 years long, the longest ones spanning about four centuries. Mean historical catches were around 15 000 tons/year ([7 000;25 000]). Time-series are analysed in a second part. Temporal variability of trap catches may be decomposed in three components: 100-year-long periodic fluctuations, 20-year cycles and inter-annual variations. These medium- to long-term fluctuations, representing more than 50% of the variability in the time-series, were synchronous all around the western Mediterranean and adjacent North Atlantic. In contrast, short-term variability was synchronous at a local scale only. It is argued that long-term fluctuations in trap catches could be considered as a proxy for those in abundance, and a synthetic time-series is computed to depict them. Biological and ecological processes that could cause such long-term fluctuations are discussed in a third part. We tested whether long-term fluctuations in Atlantic bluefin tuna might be related to large-scale environmental changes, using long time-series of the North Atlantic Oscillation (NAO), the Length of the Day index (LOD, a proxy of the atmospheric circulation index ACI) and the temperature. Spectral analyses of trap catches, LOD and temperature displayed similar spectra with peak at low frequency, whereas those of the NAO exhibited a broad band spectrum. Regression analyses and tests of correlation did not reveal any clear relationship between trap catches on the one hand and NAO and LOD on the other hand. In contrast, long-term fluctuations in trap catches appear to be negatively and significantly related to long-term trends in temperature. Underlying processes that could explain such a relationship are discussed, with special focus on changes in migration patterns. Finally, implications of such fluctuations in term of fisheries management are discussed in a fourth part. A simulation framework, in which a simulated population dynamics model is coupled with a VPA, is built to test the pertinence of the diagnostic of stock assessment according to different scenarios on fluctuations origins and population status. In the hypothesis of fluctuations linked to variations in the recruitment, VPA appears able to reconstruct the fluctuations but the predictions may be biased if natural fluctuations are not taking into account. In the hypothesis of fluctuations linked to changes in migration pattern, VPA is not able to reconstruct the population dynamics. In a precautionary approach, quotas which follow may be unsuitable in the best case, at worst dangerous if they are defined in comparison with a reference point. The concept of cible reference points, fixe and unique over time, appears not relevant for bluefin tuna; estimate trajectory reference pertinent may prove to be more pertinent.
Décrire et comprendre les fluctuations spatio-temporelles des espèces animales constituent les enjeux majeurs de l'écologie. La question est également cruciale pour réussir la gestion durable des ressources exploitées, en particulier celle du thon rouge, grand pélagique migrateur à la dynamique complexe. L'objectif de ce travail est de collecter les captures historiques de thon rouge par les madragues méditerranéennes et proche atlantiques pour (i) caractériser les fluctuations à long terme de la population migrante en Méditerranée, (ii) étudier leur déterminisme et (iii) évaluer leurs implications en terme de gestion des pêcheries. Après avoir décrit les principales caractéristiques biologiques et écologiques du thon rouge, la première partie présente la pêcherie à la madrague, puis le processus de collecte et de validation des données historiques de captures. Ce dernier conduit à la mise en place d'une base de données de 54 séries de plus de 20 ans, dont les plus longues s'étendent sur près de 4 siècles. Les productions historiques sont estimées à environ 15 000 tonnes/an ([7 000;25 000]). Les séries historiques de captures sont analysées dans la seconde partie. Leur variabilité temporelle peut être décomposée en trois composantes : de larges cycles pseudo-séculaires, des variations périodiques d'une vingtaine d'années et des fluctuations inter-annuelles. Les fluctuations à moyen et long terme, expliquant plus de la moitié de la variance des séries, sont synchrones à l'échelle du bassin méditerranéen occidental et du proche Atlantique. La variabilité inter-annuelle, en revanche, n'est synchrone qu'à une échelle locale. On montre finalement que les fluctuations à long terme des captures peuvent être considérées comme de bons indices des tendances des abondances de la population de thons rouges migrants en Méditerranée. Une série synthétique est construite pour les décrire. Les processus biologiques et écologiques susceptibles d'être à l'origine de ces fluctuations sont discutés dans la troisième partie. L'hypothèse d'un forçage environnemental à grande échelle est testée en utilisant des indices à long terme de l'Oscillation Nord Atlantique (NAO), de la longueur du jour (LOD, un indicateur de l'indice de circulation atmosphérique ACI) et de la température. Les analyses spectrales sur les séries de captures, du LOD et des températures révèlent des spectres similaires, avec un pic sur les basses fréquences, alors que celles sur le NAO conduisent à une large bande spectrale. Les régressions et les tests de corrélations ne montrent aucune relation significative entre les captures par les madragues et le NAO et le LOD. En revanche, les fluctuations à long terme des captures apparaissent significativement et négativement corrélées avec les fluctuations à long terme des températures. Les processus sous-jacents susceptibles d'expliquer une telle relation, en particulier des changements migratoires, sont discutés. Finalement, les implications des fluctuations pour la gestion de la pêcherie sont discutées dans une quatrième partie. Un cadre de simulation, couplant un modèle de dynamique de population à une VPA, est élaboré pour tester la pertinence des diagnostics d'évaluation de stock selon différents scénarios d'origine des fluctuations et d'état de la population. Dans l'hypothèse de fluctuations liées à des variations du recrutement, la VPA apparaît capable de reconstruire les fluctuations mais les prédictions sont biaisées lorsqu'il n'est pas tenu compte des fluctuations naturelles du stock. Dans l'hypothèse de fluctuations liées à des changements migratoires, la VPA est alors incapable de reproduire la dynamique de la population. Dans une approche de précaution, les quotas qui en découlent peuvent se révéler au mieux inappropriés, au pire dangereux s'ils sont définis par rapport à un point de référence. Ce concept de point cible, fixe et unique dans le temps, apparaît inapproprié pour le thon rouge ; estimer des "trajectoires de référence" serait sans doute plus pertinent.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2003/these-65.pdf
http://archimer.ifremer.fr/doc/00000/65/

Résumé : Ce travail de thèse intitulé «Evaluation de marqueurs génétiques du complexe Mycobacterium tuberculosis combinée à l'utilisation d'outils bioinformatiques: apport en épidémiologie et phylogénie de la tuberculose» a consisté en la sélection et l'évaluation de marqueurs minisatellites dans le cadre d'études épidémiologiques et phylogénétiques du bacille tuberculeux, Une première partie a ainsi porté sur l'épidémie de tuberculose en Guadeloupe, Martinique, et Guyane française ainsi que dans un pays continental à faible incidence de tuberculose, la Suède, Les résultats montrent les disparités existant entre les populations de patients tuberculeux des 3 départements français d'Amérique (DFA) ainsi que les similitudes génotypiques existant entre les bacilles tuberculeux. Par ailleurs le rôle majeur joué par les cas d'importation dans l'épidémie de tuberculose a été montré aussi bien dans les DFA qu'en Suède. Nous nous sommes ensuite intéressés à une utilisation optimale des minisatellites pour une meilleure discrimination de la famille génotypique émergeante « Beijing» circulant au Japon (Osaka, Kobe et Okinawa), ainsi qu'en Russie. Nous avons constaté le faible pouvoir discriminant du format classique 12-locus MIRU (Mycobacterial lnterspersed Repetitive Units) et proposons plusieurs nouvelles stratégies de typage basées plusieurs marqueurs minisatellites incluant certains locus hypervariables. Enfin, dans un troisième volet, nous avons étudié la diversité génétique des bacilles tuberculeux circulant actuellement dans la Caraïbe. laquelle semble refléter le passé historique très particulier de cette zone géographique au croisement d'une multitude de peuplements.
This thesis entitled "Evaluation of genetic markers of Mycobacterium tuberculosis combined with the use of bioinformatics tools: input for epidemiology and phylogeny of tuberculosis" deals with the selection and evaluation of minisatellite markers in the context of epidemiological and phylogenetic studies of the tubercle bacillus M. tuberculosis. The first part of the present work has focused on the epidemic of tuberculosis in Guadeloupe, Martinique and French Guiana as well as in a low incidence continental country, i.e Sweden. The results show differences between populations of TB patients in the three French Departments of America and similarities between the genotypes of the circulating tubercle bacilli Moreover, results highlight the important role played by imported cases for TB epidemic the three French departments of America and Sweden. ln a second part, minisatellite markers have been evaluated for a better discrimination of strains of the emerging genotype "Beijing" circulating in Japan (Osaka, Kobe and Okinawa), and Russia. A low discriminatory power of classical format 12-locus MIRU (Mycobacterial lnterspersed Repetitive Units) was observed and new combinations of minisatellites have also been proposed including hypervariable locus. Finally, the genetic diversity of tubercle bacilli circulating in the Caribbean was investigated which currently seem to reflect historical past of this very special region at the intersection of a multitude of cultures and peoples.

http://www.theses.fr/2011AGUY0427/document

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Le lien entre migration et Antilles françaises est souvent traité en termes d’émigration insulaire vers l’Hexagone. En effet, les flux les plus nombreux correspondent encore à ce mouvement centripète qui s’explique par une situation sociale tendue du fait de l’inadaptation entre l’offre de travail et les jeunes adultes en trop grand nombre. Pourtant les mobilités venant de Métropole existent avec le retour des Antillais au pays. Les Antilles attirent aussi les Métropolitains. La tertiairisation de l’économie, les investissements des grandes sociétés françaises ainsi que les dernières lois de défiscalisation ou celles concernant la création d’entreprises semblent favorisent le mouvement. L’article se propose d’analyser les moteurs de ces nouvelles formes de circulation migratoire entre la France métropolitaine et la Martinique, ainsi que l’insertion économique et les territorialités spécifiques des nouveaux acteurs.
The migration-West Indies nexus is often dealt with in terms of insular emigration towards Metropolitan France. Indeed, most of the flows are still characterised by a centripetal move that can be accounted for by the hiatus between job supply and the demographic importance of the youth. Nonetheless, Metropolitan-origin mobility exist with West Indian return migration as well as Metropolitan French migration. The boom of the service economy, investments from large French firms and recent advantageous fiscal laws favour this pattern. The article seeks to analyse the new driving forces behind the circular movement between Metropolitan France and Martinique, as well as the economic insertion and the specific territorialities of the new actors.

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.932
http://journals.openedition.org/etudescaribeennes/932

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Les vacances peuvent-elles durer, voire s’éterniser ? L’utopie est l’une des voies qui permet de penser cette option, d’opérer ce pas de côté, à contre-courant de l’ordre ambiant et dominant. De Segalen à Cendrars, l’épreuve du voyage et de l’exotisme sans voyeurisme porte en elle les preuves du trip ou de l’acte de bourlinguer. Autonomie et nomadisme sont les termes appropriés qui ouvrent et parfois forcent les portes du consensus, de l’immobilisme et de la peur généralisée. Ces deux termes — à l’origine de celui j’ai nommé « autonomadie » (terme assez intraduisible) — renvoient à l’indépendance d’esprit, à la liberté d’expression et à la libre circulation des idées, des personnes, bien avant celle des marchandises. Si la planète constitue le socle de tout voyage, la culture en est son moteur. Cet article s’attelle à baliser de nouvelles pistes de voyages, hors des sentiers battus, nourris par l’imaginaire des ailleurs, et forcément alternatifs. Il s’agit toujours, hier comme aujourd’hui, de s’élever pour mieux se lever, et donc de ne pas tomber et crever. Surtout en si bon chemin d’une belle vie prometteuse qui mène à soi comme vers les autres. L’humanité n’est rien sans la liberté de mouvement. Elle n’est rien sans le mouvement et la liberté. Les humains ne sont pas des automates soumis, mais des nomades autonomes. Et des voyageurs actifs plutôt que des touristes passifs. C’est ce que cette contribution entend non pas affirmer, mais explorer.
Can holidays last or even go on forever? Utopia is one of the ways to think this option, to operate this step aside, against the current of the surrounding and dominant order. From Segalen to Cendrars, the test of travel and exoticism without voyeurism carries in it the proofs of the trip or the act of slinging. Autonomy and nomadism are the appropriate terms that open and sometimes force the doors of consensus, immobilism and generalized fear. These two terms - at the origin of which I named “autonomadie” (in French, quite untranslatable) - refer to independence of mind, freedom of expression and the free flow of ideas, people, long before that of goods. If the planet is the foundation of all travel, culture is its driving force. This article tries to mark new paths of travel, off the beaten track, nourished by the imagination of elsewhere, and necessarily alternative. Yesterday as today, it is always a matter of rising to better stand up, and therefore not to fall and die. Especially in this good way of a beautiful promising life that leads to oneself as to the others. Humanity is nothing without freedom of movement. It is nothing without movement and freedom. Humans are not automated subjects but autonomous nomads. And active travelers rather than passive tourists. This is what this contribution intends not to affirm but to explore.

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.11151
http://journals.openedition.org/etudescaribeennes/11151

Éditeur(s) : HAL CCSD
Résumé : The sandy coasts of Languedoc-Roussillon are a zone vulnerable to erosion and flooding. These hazards are generally associated with a combination of natural factors such as waves, wind, rising sea levels and the importance of sediment supply, and are therefore worsened during storms. For the management of such risks, a better knowledge of the hydrodynamic phenomena occuring from the surf zone through to the coastal scale is essential. This need led to the development of a numerical modelling platform consisting of the 3D ocean circulation model Symphonie, usually dedicated to regional and coastal scales, which was modified to include the wave forcing, modeled by the WaveWatch III or Swan models. Using this platform the entire littoral and coastal regions can be accurately represented. The model was tested in several academic cases. Measurements on the barred beach of Sète during the winter of 2008-2009 served to refine the model, which is able to successfully reproduce the characteristics of the currents in coastal areas, drifts or rip currents over more complex bathymetries and also the vertical profiles of currents. To validate the model on the inner-shelf, we compared the simulations with measurements taken during a winter storm in 2004 around the mouth of the Têt river, as well as during storms in 2007 and 2008 in the Gulf of Aigues-Mortes. Currents are generally well reproduced. However, the scope of wave action seems limited to a depth of 30m. The characteristics of our model allow a good reproduction of the currents at all scales and the 3D nature of the model permits a more precise calculation of the shear stress and bottom current responsible, respectively, for the suspension and advection of sediments.
Le littoral sableux du Languedoc-Roussillon est un système vulnérable aux risques d'érosion et de submersion. Ces aléas sont liés à la conjonction des facteurs naturels que sont les vagues, vent, élévation du niveau de la mer et apports sédimentaires et sont donc aggravés en période de tempête. En vue d'une gestion des risques, une meilleure connaissance des phénomènes hydrodynamiques de l'échelle littorale à l'échelle côtière est essentielle. Ce travail a conduit à la réalisation d'une plateforme de modélisation numérique composée du modèle de circulation océanique 3D Symphonie, traditionnellement dédié aux échelles régionales et côtières, qui a été modifié pour inclure le forçage par les vagues, modélisées par les modèles Wavewatch III ou Swan, et ainsi étendre sa validité au littoral. Le modèle a été testé sur des cas académiques littoraux. Des mesures sur la plage à double barres de Sète pendant l'hiver 2008-2009, ont également servi à parfaire le modèle qui reproduit ainsi avec succès les caractéristiques des courants en zone littorale : la dérive, les courants sagittaux sur des bathymétries plus complexes et les profils verticaux des courants. Pour valider le modèle à des échelles plus côtières, nous avons confronté ses résultats à des mesures réalisées pendant une tempête hivernale en 2004 aux alentours de l'embouchure de la Têt, mais également sur des tempêtes de 2007 et 2008 dans le Golfe d'Aigues-Mortes. Les courants sont globalement bien reproduits. Les zones d'action des vagues semblent limitées aux zones de profondeur inférieure à 30 m. Notre modèle autorise une reproduction correcte des courants à toutes les échelles et sa nature 3D permet un calcul plus précis de la tension de cisaillement de fond et du courant près du fond, responsables respectivement de la mise en suspension et de l'advection des sédiments.
https://tel.archives-ouvertes.fr/tel-00680405

tel-00680405
https://tel.archives-ouvertes.fr/tel-00680405
https://tel.archives-ouvertes.fr/tel-00680405v2/document
https://tel.archives-ouvertes.fr/tel-00680405/file/2011_MICHAUD.pdf

Éditeur(s) : HAL CCSD VertigO
Résumé : International audience
Les submersions marines sont le plus souvent associées à des conditions météorologiques locales de tempête et aux phénomènes bien connus de surcote résultant du cumul de l’effet barométrique inverse et des vents d'afflux. Le déferlement des vagues joue également un rôle prépondérant dans la surélévation totale. Il provoque des variations du niveau d’eau de deux types : une surélévation statique du niveau moyen (surcote de vague) et des variations instantanées provoquées par le jet de rive. Ces deux phénomènes sont responsables dans certains cas de plus de 2/3 de la surélévation totale. Lors de la circulation des cyclones Lenny et Omar, le littoral ouest de l’île de la Martinique a été considérablement affecté. Les surélévations du niveau marin lors du passage au large de ces deux cyclones ont été reconstituées pour le nord-ouest de l'ile et particulièrement sur les plages de la commune de St Pierre. Les facteurs de variations du niveau marin ont été décomposés et modélisés en emboîtement d'échelles à partir des modèles ADCIRC pour les composantes de marée et de surcotes météorologiques, SWAN pour la propagation des vagues en zone côtière et les surcotes de vague et enfin pCOULWAVE pour le jet de rive. Ce travail de décomposition des facteurs de variations du niveau marin, associé à la reconstitution par enquêtes de terrain et témoignages, des limites des inondations, met en avant la vulnérabilité de la commune face aux houles cycloniques et la nécessité de prendre en compte l’ensemble des facteurs de variation du niveau marin dans l’étude de l’aléa de submersion et les documents de prévention des risques.
ISSN: 1492-8442

hal-01119372
https://hal-brgm.archives-ouvertes.fr/hal-01119372
https://hal-brgm.archives-ouvertes.fr/hal-01119372/document
https://hal-brgm.archives-ouvertes.fr/hal-01119372/file/Nicolae%20et%20al%202014%20Vertigo-15326-modelisation-lenny-1999-et-omar-2008.pdf
DOI : 10.4000/vertigo.15326

Éditeur(s) : Elsevier
Résumé : A coupled three-dimensional physical-biogeochemical model was developed in order to simulate the ecological functioning of the Rio de la Plata estuary and plume. The biogeochemical model reproduces the nitrogen cycle between five compartments: dissolved inorganic nitrogen, phytoplankton, zooplankton, detritus and dissolved organic nitrogen. The coupling is tested in seasonal climatological configurations and for the particular year 1999. The circulation is forced with Parana and Uruguay rivers discharges, NCEP wind and tide. The biogeochemical model includes loads of inorganic and organic nitrogen from both rivers. The model reproduces the correct tidal amplitudes in the estuary, as well as the most outstanding features of the observed horizontal and vertical structures of the salinity plume. Simulated surface chlorophyll a concentrations exhibit maximum values all year long seaward of the turbidity front, between the 0.5 and 15 isohalines, in agreement with SeaWiFS images of the area. The model simulates well the low primary production in the light-limited highly turbid tidal river (20 gC/m(2)/yr), the high production area in the frontal zone where it can reach 500 gC/m(2)/yr, and the nutrient-limited production in the outer estuary and inner shelf (300 gC/m(2)/yr), with realistic values in each case. According to the 1999 model simulation, the tidal river is the location of organic nitrogen remineralization with a consequent increase of the inorganic pool. At the entrance of the frontal zone, inorganic nitrogen represents about 75% of the whole nitrogen pool, it is reduced to 50% at its sea end-member. The outer estuary has the same sink role for inorganic nitrogen, suggesting that organic nitrogen is the major form exported to the shelf.
Continental Shelf Research (0278-4343) (Elsevier), 2005-03 , Vol. 25 , N. 5-6 , P. 629-653

Droits : 2004 Elsevier Ltd.
http://archimer.ifremer.fr/doc/2005/publication-334.pdf
DOI:10.1016/j.csr.2004.10.003
http://archimer.ifremer.fr/doc/00000/334/

Résumé : En Guyane comme dans l'ensemble de la région amazonienne, le risque de maladie de Chagas pour l'homme a longtemps été sous estimé du fait de l'absence de vecteur domestique et de l'existence d'un réservoir animal exclusivement sauvage. Le travail présenté répond aux besoins de compléter et d'actualiser les connaissances épidémiologiques disponibles sur la maladie de Chagas dans ce département , en précisant les modalités de circulation de Trypanosoma cruzi et les facteurs impliqués dans le cycle à l'origine des cas humains. Les données cumilées entre 2001 et 2023 représentent 971 spécimens de triatomes. Nous avons choisi de différencier les triatomes provenant des zones non habitées (forêts primaire ou secondaire) de ceux provenant de zones habitées, collectées dans les maisons à la faveur d'intrusion. Une espère, Panstrongylus geniculatus, s'est distinguée par son abondance (61,1%) et son omniprésence dans les différents types de milieux explorés. Au total, neuf espèces ont été retrouvées. En zone non habitée, avec une prédominance de P. geniculatus, P. lignarius, Rhodnius pictipes et R. robustus. L'infection des triatomes par T. cruzi a été étudiée, avec une mise en évidence d'un taux d'infection plus élevé chez les triatomes collectés à l'intérieur des habitations (53.9%) que chez ceux provenant des zones non habitées (46%). L'étude sur les mammifères sauvages a montré des taux d'infection élevés pour T. cruzi chez deux espèces : didelphis marsupialis (62.5%) et Philander opossum (35%). Cette étude a été complétée par l'analyse de la variabilité génétique de T. cruzi identifié par des techniques de génotypage réalisées sur du matériel obtenu à partir de triatomes, de mammifères sauvages et domestiques et des hommes. En zone non habitée trois groupes, TcI, TcII-TcV-TcVI et TcIII-TcIV, ont été caractérisés, avec une prédominance de TcI. Parmi les acteurs du cycle parasite, les chiens et P. geniculatus hébergent le groupe TcIII-TcIV à la différence du genre Rhodnius et des marsupiaux qui hébergent le groupe TcI. Nos résultats ont permis d'émettre un certain nombre d'hypothèses sur la circulation des génotypes de T. cruzi en Guyane
In French Guiana, as in the whole of Amazon region, the risk of Chagas disease to humans has long been underestimated due to the presence of non-domiciled triatomines and wild animal reservoir. Overall, this thesis aims at reactualizing and improving epidemiological knowledge about Chagas disease in French Guiana, by specific modalities of circulation of Trypanosoma cruzi and the factorsinvolved in the transmission cycle of the origin of human cases. Accumulated data, between 2001 and 2013, represent 971 triatomine specimens collected. We chose to differentiate triatomine collected in uninhabited areas (primary or secondary forests) and those frominhabited areas, collected in homes by intrusion. One species, Panstrongylus geniculatus, was distinguished by its abundance (61.1%) and its presence in different types of habitats investigated. A total of nine species were found in uninhabited area, with the predominance of four species: P. geniculatus, P. lignarius, Rhodnius pictipes and Eratyrus mucronatus. In inhabited area, five species of triatomine were collected, with the predominance of P. geniculatus, R. pictipes and R. robustus. The triatomine infection rate with T. cruzi has been studied, with a highlighting of higher rate of infection in triatomine collected inside houses (53.9%) than those from uninhabited area (46%). The study on wild mammals showed high T. cruzi infection rates for two species: Didelphis marsupialis (62.5%) and Philander opossum (35%).This study was completed by the analysis of the genetic variability of T. cruzi identified by genotyping techniques performed on material obtained from triatomine, wild and domestic mammals and humans. In uninhabited area, three groups$ TcI, TcII-TcV-TcVI and TcIII-TcIV have been characterized, with a predominance of TcIII-TcIV group. In inhabited area, only two groups were characterized (TcI andTcIII-TcIV), with a predominance of TcI. Among the actor’s transmission cycle of parasite, dogs and P. geniculatus were characterized by TcIII-TcIV group. Contrary to Rhodnius genus and marsupials were characterized by the TcI group. Our results have allowed issuing a number of assumptions about the circulation of T. cruzi genotypes in French Guiana

http://www.theses.fr/2013AGUY0734/document

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
We develop and implement a new method to take into account the impact of waves into the 3-D circulation model SYMPHONIE (Marsaleix et al., 2008, 2009a), following the simplified equations of Bennis et al. (2011) which use glm2z-RANS theory (Ardhuin et al., 2008b). These adiabatic equations are completed by additional parameterizations of wave breaking, bottom friction and wave-enhanced vertical mixing, making the forcing valid from the surf zone through to the open ocean. The wave forcing is performed by wave generation and propagation models WAVEWATCH III® (Tolman, 2008, 2009; Ardhuin et al., 2010) and SWAN (Booij et al., 1999). The model is tested and compared with other models for a plane beach test case, previously tested by Haas and Warner (2009) and Uchiyama et al. (2010). A comparison is also made with the laboratory measurements of Haller et al. (2002) of a barred beach with channels. Results fit with previous simulations performed by other models and with available observational data. Finally, a realistic case of energetic waves travelling over a coast of the Gulf of Lion (in the northwest of the Mediterranean Sea) for which currents are available at different depths as well as an accurate bathymetric database of the 0-10 m depth range, is then simulated. A grid nesting approach is used to account for the different forcings acting at different spatial scales. The simulation coupling the effects of waves and currents is successful to reproduce the powerful northward littoral drift in the 0-15 m depth zone. More precisely, two distinct cases are identified: when waves have a normal angle of incidence with the coast, they are responsible for complex circulation cells and rip currents in the surf zone, and when they travel obliquely, they generate a northward littoral drift. These features are more complicated than in the test cases, due to the complex bathymetry and the consideration of wind and non-stationary processes. Wave impacts in the inner shelf are less visible since wind and regional circulation seem to be the predominant forcings. Besides, a discrepancy between model and observations is noted at that scale, possibly linked to an underestimation of the wind stress. Lastly, this three-dimensional method allows a good representation of vertical current profiles and permits to calculate the shear stress associated with wave and current. Future work will focus on the combination with a sediment transport model.
ISSN: 1812-0806

hal-00766548
https://hal.archives-ouvertes.fr/hal-00766548
https://hal.archives-ouvertes.fr/hal-00766548/document
https://hal.archives-ouvertes.fr/hal-00766548/file/os-8-657-2012.pdf
DOI : 10.5194/osd-8-2417-2011

Éditeur(s) : HAL CCSD World Scientific
Résumé : The present paper presents a laboratory experiment of rip current circulations over a moveable bed. The rip current characteristics over four distinct beach morphologies, exhibiting more or less developed nature-like bar-rip morphology,were investigated. For each video run, the same off shore shore-normal waves were generated by the wave maker with the same mean water level in order to study the sensitivity of the rip current characteristics as a function of the beach morphology only. In each case, a 1-hour video run was used to track a large number (~30) of drifters released within the surf zone. Image coordinates were then rectifie d to still water level Cartesian coordinates to compute drifter velocities, mean characteristics and surf zone rete ntion rates. Results show the presence of classic rip current patterns with counter-rotating cells and a relatively narrowoffshore-directed jet with, for three of the situations, a reasonably symmetric shape. Non-surprisingly, it was found that rip current intensity increases with increasing relative depth of the rip channel. The wave-driven circulations were strongly unstable. Computed standard deviation in fl ow intensity and direction provides high resolution information on the spatial variability of the rip current insta bilities with, for instance, highly-pulsating and weakly directionally variable offshore-directed flow in the rip channel. Conversely to what was previously hypothesized in the literature, there was hardly trace of vortices being shed offs hore and drifters exiting the surf zone compartment were not systematically caught by a pulsating jet. The cause for drifter exiting the semi-enclosed surf zone compartment remains, however, elusive and deserves further investigations. The computed surf zone retention rates (~90%) were of the order of those previously observed in the field, with no clear relationship with the mean rip current velocity or relative depth of the rip channel. Further video-runs will have to be analyzed to explore potential explanations
Proceedings of Coastal Dynamics 2009 Impacts of Human Activities on Dynamic Coastal Processes

ISBN : 978-981-4282-46
hal-00854534
https://hal.archives-ouvertes.fr/hal-00854534

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
MR and MDHD contributed equally to this work. Summary Painful vaso-occlusive crisis, a hallmark of sickle cell anaemia, results from complex, incompletely understood mechanisms. Red blood cell (RBC) damage caused by continuous endogenous and exogenous oxidative stress may precipitate the occurrence of vaso-occlusive crises. In order to gain insight into the relevance of oxidative stress in vaso-occlusive crisis occurrence , we prospectively compared the expression levels of various oxidative markers in 32 adults with sickle cell anaemia during vaso-occlusive crisis and steady-state conditions. Compared to steady-state condition, plasma levels of free haem, advanced oxidation protein products and myeloperoxi-dase, RBC caspase-3 activity, as well as the concentrations of total, neutrophil-and RBC-derived microparticles were increased during vaso-occlusive crises, whereas the reduced glutathione content was decreased in RBCs. In addition, natural anti-band 3 autoantibodies levels decreased during crisis and were negatively correlated with the rise in plasma advanced oxidation protein products and RBC caspase-3 activity. These data showed an exacerbation of the oxidative stress during vaso-occlusive crises in sickle cell anaemia patients and strongly suggest that the higher concentration of harmful circulating RBC-derived microparticles and the reduced anti-band 3 autoantibodies levels may be both related to the recruitment of oxidized band 3 into membrane aggregates.
ISSN: 0007-1048

inserm-01476067
http://www.hal.inserm.fr/inserm-01476067
http://www.hal.inserm.fr/inserm-01476067/document
http://www.hal.inserm.fr/inserm-01476067/file/2016%2C%20Hierso%20-%20Exacerbation%20of%20oxidative%20stress%20during%20sickle%20vaso-occlusive%20crisis.pdf
DOI : 10.1111/bjh.14476

Éditeur(s) : HAL CCSD
Résumé : Ocean Drilling Program Hole 1256D reached for the first time the transition zone between the sheeted dike complex and the uppermost gabbros. The recovered crustal section offers a unique opportunity to study the deepest part of the hydrothermal system in present-day oceanic crust. We present a structural analysis of electrical borehole wall images. We identified, and measured the orientations of four categories of structures: major faults, minor fractures, possibly hydrothermal veins, and dikes. All structures tend to strike parallel to the paleo-ridge axis. Three major fault zones (meter thick) and dikes are steeply dipping (~ 75° on average) outward the ridge. Centimeter-thick moderately conductive planar features are interpreted as hydrothermal veins, are organized in arrays of consistent spacing, thickness, and orientation, and are dipping about 15-20° toward the ridge. This structural pattern is interpreted as an on-axis paleohydrothermal circulation system, with vertical, dike-parallel fractures, and sub-horizontal high-temperature hydrothermal veins at the base of the sheeted dike, which was subsequently rotated ~ 15° westward around a ridge-parallel, sub-horizontal axis. This rotation can be caused by upper-crustal block rotation along a listric normal fault, and/or subsidence at the ridge axis.
Ofioliti

hal-00757592
https://hal.archives-ouvertes.fr/hal-00757592
DOI : 10.4454/ofioliti.v37i1.402

Éditeur(s) : HAL CCSD Université des Antilles
Résumé : International audience
Le lien entre migration et Antilles françaises est souvent traité en termes d’émigrationinsulaire. En effet, les flux les plus nombreux correspondent encore à ce mouvement centripètequi s’explique par une situation sociale tendue du fait de l’inadaptation entre l’offre de travailet les jeunes adultes en trop grand nombre.2 Pourtant les mobilités venant de Métropole existent avec le retour des Antillais au pays,durant leur vie active ou pour leur retraite. Les Antilles attirent aussi les Métropolitains. Latertiairisation de l’économie, les investissements des grandes sociétés françaises ainsi queles dernières lois de défiscalisation ou celles concernant la création d’entreprises semblentconfirmer le mouvement. Une situation explicable jusqu’aux années 1970 du fait de l’absencede qualification locale mais qui pose aujourd’hui problème. Ces circulations migratoires quideviennent pérennes pour certains concernent les fonctionnaires mais aussi des entrepreneurs,des salariés mais également des personnes en situation sociale difficile, d’autres enfin quisuivent leur passion, circumnavigateurs, surfeurs ou rastas.3 Quels sont les moteurs de ces nouvelles formes de circulation migratoire entre la Francemétropolitaine et la Martinique ? Quelles sont ces nouvelles populations ? Quelle est leur placedans l’économie et dans la formation de territorialités spécifiques ?
ISSN: 1779-0980

hal-01202994
https://hal.archives-ouvertes.fr/hal-01202994
https://hal.archives-ouvertes.fr/hal-01202994/document
https://hal.archives-ouvertes.fr/hal-01202994/file/etudescaribeennes-932-8-du-desir-d-ile-a-l-installation-les-circulations-migratoires-des-metropolitains-a-la-martinique.pdf
DOI : 10.4000/etudescaribeennes.932

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The contourite depositional system (CDS) along the southwestern Iberian Margin (SIM), within the Gulf of Cadiz and offshore areas of western Portugal bear the unmistakable signal of Mediterranean Outflow Water (MOW) exiting the Strait of Gibraltar. This locality records key information concerning the effects of tectonic activity on margin sedimentation, the effects of MOW dynamics on Atlantic circulation, and how these factors may have influenced global climate. Over the last four decades, numerous studies have been conducted on the late Miocene, Pliocene and Quaternary sedimentary stacking pattern of Neogene basins along the SIM for both academic and resources exploration purposes. However, understanding of the region rests primarily on basic seismic stratigraphy calibrated with limited data from only a few exploration wells. The Integrated Ocean Drilling Program (IODP) Expedition 339 recently drilled five sites in the Gulf of Cadiz and two sites on the western Iberian margin. The integration of core and borehole data with other geophysical databases leads us to propose a new stratigraphic framework. Interpretation of IODP Exp. 339 data along with that from industry sources and onshore outcrop analysis helps refine our understanding of the SIM's sedimentary evolution.We identify significant changes in sedimentation style and dominant sedimentary processes, coupled with widespread depositional hiatuses along the SIM within the Cadiz, Sanlucar, Doñana, Algarve and Alentejo basins. Following the 4.5 Ma cessation of a previous phase of tectonic activity related to the Miocene–Pliocene boundary, tectonics continued to influence margin development, downslope sediment transport and CDS evolution. Sedimentary features indicate tectonic pulses of about 0.8–0.9 Ma duration with a pronounced overprint of ~ 2–2.5 Ma cycles. These more protracted cycles relate to the westward rollback of subducted lithosphere at the convergent Africa-Eurasia plate boundary as its previous NW–SE compressional regime shifted to a WNW–ESE direction. Two major compressional events affecting to the Neogene basins at 3.2–3 Ma and 2–2.3 Ma help constrain the three main stages of CDS evolution. The stages include: 1) the initial-drift stage (5.33–3.2 Ma) with a weak MOW, 2) a transitional-drift stage (3.2–2 Ma) and 3) a growth-drift stage (2 Ma-present time) with enhanced MOW circulation into the Atlantic and associated contourite development due to greater bottom-current velocity. Two minor Pleistocene discontinuities at 0.7–0.9 Ma and 0.3–0.6 Ma record the effects of renewed tectonic activity on basin evolution, appearing most prominently in the Doñana basin. Several discontinuities bounding major and minor units appear on seismic profiles. Quaternary records offer the clearest example of this, with major units of about 0.8–0.9 Ma and sub-units of 0.4–0.5 Ma. Sedimentation is controlled by a combination of tectonics, sediment supply, sea-level and climate. This research identifies time scales of tectonic controls on deep-marine sedimentation, specifically over periods of 2.5–> 0.4 Ma. Shorter-term climatic (orbital) mechanisms control sedimentation at time scales of ≤ 0.4 Ma. The role of bottom water circulation and associated processes in shaping the seafloor and controlling the sedimentary stacking pattern on continental margins has to be seriously reconsidered in future multidisciplinary studies. This is not only because of the common occurrence of sandy contourite deposits in deep water setting and their economic interest for hydrocarbon exploration, but principally because they archive the heartbeat of the interior Earth and therefore have important sedimentary and paleoceanographic implications.
ISSN: 0025-3227

hal-01356166
https://hal.archives-ouvertes.fr/hal-01356166
DOI : 10.1016/j.margeo.2015.09.013

Éditeur(s) : Springer
Résumé : We present the global general circulation model IPSL-CM5 developed to study the long-term response of the climate system to natural and anthropogenic forcings as part of the 5th Phase of the Coupled Model Intercomparison Project (CMIP5). This model includes an interactive carbon cycle, a representation of tropospheric and stratospheric chemistry, and a comprehensive representation of aerosols. As it represents the principal dynamical, physical, and bio-geochemical processes relevant to the climate system, it may be referred to as an Earth System Model. However, the IPSL-CM5 model may be used in a multitude of configurations associated with different boundary conditions and with a range of complexities in terms of processes and interactions. This paper presents an overview of the different model components and explains how they were coupled and used to simulate historical climate changes over the past 150 years and different scenarios of future climate change. A single version of the IPSL-CM5 model (IPSL-CM5A-LR) was used to provide climate projections associated with different socio-economic scenarios, including the different Representative Concentration Pathways considered by CMIP5 and several scenarios from the Special Report on Emission Scenarios considered by CMIP3. Results suggest that the magnitude of global warming projections primarily depends on the socio-economic scenario considered, that there is potential for an aggressive mitigation policy to limit global warming to about two degrees, and that the behavior of some components of the climate system such as the Arctic sea ice and the Atlantic Meridional Overturning Circulation may change drastically by the end of the twenty-first century in the case of a no climate policy scenario. Although the magnitude of regional temperature and precipitation changes depends fairly linearly on the magnitude of the projected global warming (and thus on the scenario considered), the geographical pattern of these changes is strikingly similar for the different scenarios. The representation of atmospheric physical processes in the model is shown to strongly influence the simulated climate variability and both the magnitude and pattern of the projected climate changes.
Climate Dynamics (0930-7575) (Springer), 2013-05 , Vol. 40 , N. 9-10 , P. 2123-2165

Droits : The Author(s) 2013. This article is published with open access at Springerlink.com
http://archimer.ifremer.fr/doc/00138/24966/23079.pdf
DOI:10.1007/s00382-012-1636-1
http://archimer.ifremer.fr/doc/00138/24966/