Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The cyanobacteria-derived neurotoxin β-methylamino-l-alanine (BMAA) represents a plausible environmental trigger for amyotrophic lateral sclerosis (ALS), a debilitating and fatal neuromuscular disease. With the eutrophication of water bodies, cyanobacterial blooms and their toxins are becoming increasingly prevalent in France, especially in the Brittany region. Cyanobacteria are monitored at only a few recreational sites, preventing an estimation of exposure of the human population. By contrast, phosphorus, a limiting nutrient for cyanobacterial growth and thus considered a good proxy for cyanobacteria exposure, is monitored in many but not all surface water bodies. Our goal was to develop a geographic exposure indicator that could be used in epidemiological research. We considered the total phosphorus (TP) concentration (mg/L) of samples collected between October 2007 and September 2012 at 179 monitoring stations distributed throughout the Brittany region. Using readily available spatial data, we computed environmental descriptors at the watershed level with a Geographic Information System. Then, these descriptors were introduced into a backward stepwise linear regression model to predict the median TP concentration in unmonitored surface water bodies. TP concentrations in surface water follow an increasing gradient from West to East and inland to coast. The empirical concentration model included five predictor variables with a fair coefficient of determination (R2 = 0.51). The specific total runoff and the watershed slope correlated negatively with the TP concentrations (p = 0.01 and p < 10− 9, respectively), whereas positive associations were found for the proportion of built-up area, the upstream presence of sewage treatment plants, and the algae volume as indicated by the Landsat red/green reflectance ratio (p < 0.01, p < 10− 6 and p < 0.01, respectively). Complementing the monitoring networks, this geographical modeling can help estimate TP concentrations at the watershed level, delivering a proxy for cyanobacteria exposure that can be used along with other risk factors in further ALS epidemiologic case–control studies
ISSN: 0160-4120

hal-01175538
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01175538
DOI : 10.1016/j.envint.2015.04.007
PUBMED : 25913322

Éditeur(s) : HAL CCSD Elsevier
Résumé : Le titre a été changé Ancien titre: Roles for local crowding and pressure in counteracting density fluctuations at equilibrium
International audience
What is the probability that all the gas in a box accumulates in the same half of this box? Though amusing, this question underlies the fundamental problem of density fluctuations at equilibrium, which has profound implementations in many physical fields. The currently accepted solutions are derived from the studies of Brownian motion by Smoluchowski, but they are not appropriate for the directly colliding particles of gases. Two alternative theories are proposed here using self-regulatory Bernoulli distributions. A discretization of space is first introduced to develop a mechanism of matter congestion holding for high densities. In a second mechanism valid in ordinary conditions, the influence of local pressure on the location of every particle is examined using classical laws of ideal gases. This approach reveals that a negative feedback results from the reciprocal influences between individual particles and the population of particles, which strongly reduces the probability of atypical microstates. Finally, a thermodynamic quantum of time is defined to compare the recurrence times of improbable macrostates predicted through these different approaches.
Physica A: Statistical Mechanics and its Applications

hal-00920985
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00920985
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00920985v2/document
ARXIV : 1404.6223
DOI : 10.1016/j.physa.2014.03.067

Éditeur(s) : HAL CCSD
Résumé : Water vapour is highly variable in the atmosphere with concentration reaching saturation in the tropics and with dry areas over elevated continental region. Good knowledge of the amount of integrated water vapour in the air is necessary to predict phase changes and in particular precipitation. Water vapour variability measurements are still insufficient with standard observing systems. Moreover accurate GPS antenna positioning is affected by the refractivity index variation in the troposphere. Consequently, vertical positioning component estimation is difficult. This variation is directly linked to distribution of variables such as pressure, temperature and humidity along the path between satellite and receiver. Here we study more specifically heavy rains et notably Cevenols events. This thesis work consists to check the GPS measurement validity to quantify water vapour in comparison with measurements from radiosoundings and meteorological model outputs. GPS observations and flux surface information have been analysed to see if water vapour quantification by GPS allowed characterising heavy rain events (cumulative rainfall amount greater than 150 mm). Then, we tested the GPS data assimilation impact on cumulative precipitation forecasts using the high resolution Meteo France AROME model (2.5 km). Finally the quality and the contribution of GPS measurement on sea is evaluated for water vapour measurement. This study has been realised in the framework of VAPIMED experiment.
La vapeur d'eau varie largement dans l'atmosphère avec des concentrations allant de la saturation dans les tropiques à des zones presque sèches au-dessus des zones continentales élevées. Une bonne connaissance du contenu en vapeur d'eau dans l'air est nécessaire pour la prévision des changements de phases, notamment les précipitations. La mesure de la variabilité de la vapeur d'eau est une lacune des systèmes d'observation. Par ailleurs, il est apparu que le positionnement précis des antennes GPS était affecté par la variation de l'indice de réfraction dans la troposphère, ce qui rend particulièrement difficile l'estimation de la composante verticale. Cette variation est directement liée à la distribution des variables pression, température et humidité sur les trajets satellite-récepteur. On s'intéresse ici à l'étude des précipitations intenses et notamment aux épisodes Cévenols. Ce travail de thèse consiste à vérifier la validité de la mesure GPS pour la quantification de la vapeur d'eau en la comparant avec des mesures issues de radiosondage et des sorties de modèle météorologique. On cherche à analyser si la quantification de vapeur d'eau par GPS permet de caractériser les forts événements précipitants (cumuls supérieurs à 150 mm) à l'aide d'observations conjointes sur les flux de surface. On étudie ensuite l'impact de l'assimilation de données GPS issues d'un réseau GPS dense sur la prévision des cumuls de pluies dans le modèle à hauterésolution (2.5 km) AROME de Météo France. Finalement on évalue la qualité et l'apport de la mesure de vapeur d'eau par GPS en mer dans le cadre d'une campagne de mesure VAPIMED).
https://tel.archives-ouvertes.fr/tel-00444081

Droits : info:eu-repo/semantics/OpenAccess
tel-00444081
https://tel.archives-ouvertes.fr/tel-00444081
https://tel.archives-ouvertes.fr/tel-00444081/document
https://tel.archives-ouvertes.fr/tel-00444081/file/These_KBoniface.pdf

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : Aim The aim of the present study was to examine whether listening to music during warming-up might influence short-term maximal performance (STMP), cognitive anxiety, self-confidence, and enjoyment during Ramadan, and whether these affects might predict STMP. Methods Nine male physical education students (age: 21 ± 1.1 years; height: 1.8 ± 0.04 m; body mass: 83 ± 5 kg) volunteered to participate in the present study. A within-subjects design consisted of four experimental sessions: Two sessions occurred one week before Ramadan and two others took place during Ramadan. They were scheduled at 5 p.m. and were conducted as follows: After a 10-minute warm-up either with or without listening to music, each participant performed a 5-m multiple shuttle run test, after which he was asked to answer items intended to assess his affective state during the experimental task. Results Our findings revealed that STMP was lower during Ramadan than before Ramadan in the no-music condition. Additionally, it was found that STMP was higher in the music condition than in the no-music condition during Ramadan, and that STMP measured before Ramadan did not differ from that measured during Ramadan in the music condition. Regarding affects, the findings revealed that enjoyment was lower during Ramadan than before Ramadan in the music condition, and that cognitive anxiety was lower in the music condition than in the no-music condition before Ramadan. Self-confidence was not influenced by the experimental conditions. Conclusion This study showed that listening to music during warming-up not only would be beneficial for STMP in Ramadan fasters, but also would counteract the negative effects of Ramadan observance on STMP.
ISSN: 1932-6203

hal-01467699
https://hal-univ-paris10.archives-ouvertes.fr/hal-01467699
DOI : 10.1371/journal.pone.0136400

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The pearl oyster Pinctada margaritifera has the specific ability to produce pearls with the widest range of coloursamong all pearl oyster species. This pearl colour diversity originates from the mantle biomineralising tissue(graft) of the donor oyster, which is originally responsible for the variety of colours of the inner shell surface.This study aimed to: 1) assess the geographic distribution and establish a first stocklist of the colourful oysterphenotypes used as donors in French Polynesia, and 2) investigate the phenotypic relation between inner shellcolouration and the corresponding colour of harvested pearls. With the support of a pearl farmers' network,we investigated the different donor phenotype frequencies among five collection sites (Ahe, Apataki, Takaroa,TakumeandMangareva). This donor evaluation was made during grafting of pearl oysters (N=49,938) obtainedfrom collector stations. Results showed that pearl production is mainly based on six common colourful donorphenotypes classified as monochromatic and polychromatic profiles, which shown different frequenciesamong the collection sites. Experimental grafts (N=4640)were then realised and subsequent culture conductedat a single site in order to avoid pearl colour variation due to environmental influences. Traceability between donors(N=232) and pearls (N=2776), revealed that: 1) yellow (gold) and aubergine (reddish) pearls could bemostly obtained by using the monochromatic yellowand red donor phenotypes, respectively, and 2) one third toone quarter of grey pearlswas inevitably harvested, whatever the polychromatic phenotype chosen as the donor,which leaves at least half the harvest composed of the attractive green and peacock colours. This preliminarystocklist of colour range together with analysis of the colour phenotype transmission between inner shell andpearl provide the basis for producing multiple pearl oyster “colour lines” through hatchery propagation andwould be helpful for future selective breeding programs.Statement of relevance: Donor shell colour selection predict colours of pearls
ISSN: 0044-8486

hal-01489153
https://hal-univ-perp.archives-ouvertes.fr/hal-01489153
DOI : 10.1016/j.aquaculture.2016.10.017

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
Background: Microbial genetic diversity is often investigated via the comparison of relatively similar 16S molecules through multiple alignments between reference sequences and novel environmental samples using phylogenetic trees, direct BLAST matches, or phylotypes counts. However, are we missing novel lineages in the microbial dark universe by relying on standard phylogenetic and BLAST methods? If so, how can we probe that universe using alternative approaches? We performed a novel type of multi-marker analysis of genetic diversity exploiting the topology of inclusive sequence similarity networks. Results: Our protocol identified 86 ancient gene families, well distributed and rarely transferred across the 3 domains of life, and retrieved their environmental homologs among 10 million predicted ORFs from human gut samples and other metagenomic projects. Numerous highly divergent environmental homologs were observed in gut samples, although the most divergent genes were over-represented in non-gut environments. In our networks, most divergent environmental genes grouped exclusively with uncultured relatives, in maximal cliques. Sequences within these groups were under strong purifying selection and presented a range of genetic variation comparable to that of a prokaryotic domain. Conclusions: Many genes families included environmental homologs that were highly divergent from cultured homologs: in 79 gene families (including 18 ribosomal proteins), Bacteria and Archaea were less divergent than some groups of environmental sequences were to any cultured or viral homologs. Moreover, some groups of environmental homologs branched very deeply in phylogenetic trees of life, when they were not too divergent to be aligned. These results underline how limited our understanding of the most diverse elements of the microbial world remains, and encourage a deeper exploration of natural communities and their genetic resources, hinting at the possibility that still unknown yet major divisions of life have yet to be discovered.
ISSN: 1745-6150

Droits : http://creativecommons.org/licenses/by/
hal-01257771
http://hal.upmc.fr/hal-01257771
http://hal.upmc.fr/hal-01257771/document
http://hal.upmc.fr/hal-01257771/file/s13062-015-0092-3.pdf
DOI : 10.1186/s13062-015-0092-3

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The interseismic velocity field provided by geodetic methods is generally interpreted in the framework of a thick elastic lithosphere with a slipping fault at depth. Because lateral variations of lithospheric rheology play a key role in determining the geological strain distribution, I examine the idea that interseismic strain rate variations also occur in response to lateral variations in the elastic thickness of the lithosphere. Using a stress balance principle and some simplifying assumptions, I show using a 1D model that elastic thickness is inversely proportional to strain rate for the simple case of pure strike-slip faulting. Elastic thickness computed on three profiles crossing the San Andreas fault system (SAFS) suggests that the distribution of interseismic strain rate is compatible with a thick elastic lithosphere in the Great Basin-Sierra Nevada province and on the Pacific plate. Conversely, a thin plate with a shallow asthenosphere is needed on the SAFS to explain its high strain rate. A 2.5D Finite Element model of interseismic strain in the Carrizo Plain region in Central California shows how known vertical and horizontal variations of elastic properties refine 1D model predictions. In a case of a multiple fault system, I point out that the interseismic velocity is not causally tied to faults slip rate. Therefore, analysing the velocity field across the SAFS cannot reliably provide faults slip rate distribution as previously claimed. Rather, the apparent correlation between geologic slip rate and interseismic strain may only indicate that the elastic thickness plays a dominant role in controlling fault strength. Finally, I suggest that interseismic geodetic strain could be a new way to infer effective elastic plate thickness on the continents.
ISSN: 0012-821X

hal-00412155
https://hal.archives-ouvertes.fr/hal-00412155
DOI : 10.1016/j.epsl.2008.01.046

Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
Canopy height is a key variable in tropical forest functioning and for regional carbon inventories. We investigate the spatial structure of the canopy height of a tropical forest, its relationship with environmental physical covariates, and the implication for tropical forest height variation mapping. Making use of high-resolution maps of LiDAR-derived Digital Canopy Model (DCM) and environmental covariates from a Digital Elevation Model (DEM) acquired over 30,000 ha of tropical forest in French Guiana, we first show that forest canopy height is spatially correlated up to 2500 m. Forest canopy height is significantly associated with environmental variables, but the degree of correlation varies strongly with pixel resolution. On the whole, bottomland forests generally have lower canopy heights than hillslope or hilltop forests. However, this global picture is very noisy at local scale likely because of the endogenous gap-phase forest dynamic processes. Forest canopy height has been predictively mapped across a pixel resolution going from 6 m to 384 m mimicking a low resolution case of 3 points·km −2. Results of canopy height mapping indicated that the error for spatial model with environment effects decrease from 8.7 m to 0.91 m, depending of the pixel resolution. Results suggest that, outside the calibration plots, the contribution of environment in shaping the global canopy height distribution is quite limited. This prevents accurate canopy height mapping based only on environmental information, and suggests that precise canopy height maps, for local management purposes, can only be obtained with direct LiDAR monitoring.
ISSN: 2072-4292

hal-01590726
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590726
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590726/document
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590726/file/remotesensing-08-00747.pdf
DOI : 10.3390/rs8090747

Éditeur(s) : HAL CCSD Wiley
Résumé : Wood specific gravity (WSG) is a strong predictor of tree performance across environmental gradients. Yet it remains unclear how anatomical elements linked to different wood functions contribute to variation in WSG in branches and roots across tropical forests. [br/][br/]We examined WSG and wood anatomy in white sand, clay terra firme and seasonally flooded forests in French Guiana, spanning broad environmental gradients found throughout Amazonia. We measured 15 traits relating to branches and small woody roots in 113 species representing the 15 most abundant species in each habitat and representative species from seven monophyletic lineages occurring in all habitats. [br/][br/]Fiber traits appear to be major determinants of WSG, independent of vessel traits, in branches and roots. Fiber traits and branch and root WSG increased from seasonally flooded species to clay terra firme species and lastly to white sand species. Branch and root wood traits were strongly phylogenetically constrained. Lineages differed in wood design, but exhibited similar variation in wood structure across habitats. [br/][br/]We conclude that tropical trees can invest differently in support and transport to respond to environmental conditions. Wind disturbance and drought stress represent significant filters driving tree distribution of Amazonian forests; hence we suggest that biophysical explanations should receive more attention.
ISSN: 0028-646X

hal-01195075
https://hal.archives-ouvertes.fr/hal-01195075
PRODINRA : 269680
PUBMED : 24329812

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
After Jurassic rifting, numerous carbonate platforms (i.e., the Orizaba, Cordoba and Golden Lane-Tuxpan platforms) developed during the Lower and Middle Cretaceous episode of thermal subsidence along the western passive margin of the Gulf of Mexico, with intervening basinal domains (i.e., the Tampico-Misantla, Zongolica, Veracruz and Deep Gulf of Mexico - DGM - basins).;During the Late Cretaceous-Paleocene, the east-verging Sierra Madre Oriental thrust belt developed, resulting in tectonic uplift and unroofing of the allochthonous units (i.e. tectonic units made up of former Orizaba and Cordoba platforms and Zongolica Basin series). This new topography provided also an important source of clastics to feed the adjacent foredeep, where coeval tectonic loading accounted for the bending of the foreland lithosphere. However, shallow water facies or even emersion persisted until the Eocene in the forebulge area (at the present location of the Golden Lane), preventing locally the clastics to reach the DGM. This topographic barrier was ultimately bypassed by the clastics only during the Oligocene and Neogene, once (1) the prograding clastic wedge had exceeded accommodation, and (2) the long lasting thermal subsidence of the passive margin could overpass the effect of the bending and force the former bulge to sink.;Numerous paleo-thermo-meters (Tmax, Ro), paleo-thermo-barometers (fluid inclusions), PVT and coupled forward kinematic and thermal modeling have been used to calibrate and date the progressive unroofing of the thrust belt. Coupled tectonic and sedimentologic modeling was applied in the foreland to predict the distribution of sand versus shale ratios in the Oligocene to Plio-Quaternary clastic sedimentary wedge of the passive margin, where gravitational gliding of post-Eocene series occurred during the Neogene along major listric faults.;Mantle dynamics are advocated as the main process accounting for post-orogenic uplift and regional tilting of the basement, which initiated a massive transfer of sediments from the Cordillera towards the Gulf of Mexico, from Oligocene onward, resulting in a destabilization and gravitational collapse of the western slope of the Gulf of Mexico in Neogene times.
ISSN: 0040-1951

hal-00445248
https://hal.archives-ouvertes.fr/hal-00445248
DOI : 10.1016/j.tecto.2009.04.012

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Cross-species analyses of plant functional traits have shed light on factors contributing to differences in performance and distribution, but to date most studies have focused on either leaves or stems. We extend these tissue-specific analyses of functional strategy towards a whole-plant approach by integrating data on functional traits for 13 448 leaves and wood tissues from 4672 trees representing 668 species of Neotropical trees. Strong correlations amongst traits previously defined as the leaf economics spectrum reflect a tradeoff between investments in productive leaves with rapid turnover vs. costly physical leaf structure with a long revenue stream. A second axis of variation, the 'stem economics spectrum', defines a similar tradeoff at the stem level: dense wood vs. high wood water content and thick bark. Most importantly, these two axes are orthogonal, suggesting that tradeoffs operate independently at the leaf and at the stem levels. By simplifying the multivariate ecological strategies of tropical trees into positions along these two spectra, our results provide a basis to improve global vegetation models predicting responses of tropical forests to global change.
ISSN: 1461-023X

hal-00594040
https://hal.archives-ouvertes.fr/hal-00594040

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We use 3-D mechanical modeling representing faults as planar surfaces with frictional properties that obey Coulomb-failure process to explore the long-term slip rates of the Altyn Tagh fault and Kunlun faults in the north Tibetan plateau. Crustal theology is simplified as an elastoplastic upper crust and a viscoelastic lower crust. Far-field GPS velocities and late Quaternary fault slip rates are used to constrain the model results. Rheological tests show that effective fault friction lower than 0.1-0.08 leads to high slip rates that fit with geologically and geodetically determined slip rates of the Kunlun fault (10-11.7 +/- 1.5 mm/yr). Meanwhile, the modeled Altyn Tagh fault reaches slip rates similar to 13.7 mm/yr to similar to 7.8 mm/yr in its central portion, between ranges of the geological slip rates. Associated with high slip rates, our model predicts that central Tibet (similar to 84 degrees E-95 degrees E) from the Altyn Tagh fault to the north of the Himalayan arc accommodates north-south shortening and east-west extension rates of similar to 10-12 mm/yr and similar to 8-10 mm/yr, respectively. We also question the widely accepted idea that interseismic strain is driven at the base of the seismogenic zone by a screw dislocation. If this assumption fails, the presented model implies that interseismic strain around large strike-slip faults could be distributed in a much broader way if the lithosphere deforms as a thin elastic plate rather than an elastic half-space with an embedded dislocation. If this distributed deformation is ignored, and the instantaneous surface deformation field modeled as that resulting from slip on a dislocation below a specified depth embedded in an elastic half-space, the estimated slip rate will inevitably be lower than the true long-term slip rate. This appears to explain why geodetic slip rates proposed for the Altyn Tagh fault (510 mm/yr) are lower than some of the geological slip rates. (C) 2008 Elsevier B.V. All rights reserved.
ISSN: 0012-821X

hal-00411926
https://hal.archives-ouvertes.fr/hal-00411926
DOI : 10.1016/j.epsl.2008.06.049

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Marine Protected Areas (MPAs) are increasingly used for biodiversity conservation and the management of sustainable fisheries. The use of taxonomic surrogates in routine monitoring of the reserve effects on fish assemblages may represent a promising method due to its substantial technical and economic benefits. However, higher taxonomic ranks should be used as surrogates with caution, especially for fish, where the approach is still virtually undocumented. This study aims to shed light on relationships between taxonomic relatedness and ecological similarity, which is crucial to assess the relevance of species surrogacy to reflect species-level information and detect changes in fish related to protection regimes. By analyzing data from a Mediterranean MPA, we show that rather being related to taxonomic relationships, the ability of higher taxa to reflect species-level patterns was explained in terms of aggregation level and distribution of species within taxa. Null models using random aggregations of species were created to identify the best surrogates able to depict changes in responses of assemblages to protection observed at the species-level. Comparison of null model predictions with the more classical higher-taxon approach revealed that the latter was not reliable because, unlike null model outcomes, surrogates determined empirically were not relevant for other subsequent independent monitoring. The effectiveness of species surrogates to depict changes in responses of assemblages to protection observed at the species-level depended (1) on the numerical resolution of the aggregation and (2) the magnitude of differences between protected and unprotected locations. Such findings suggest that surrogacy approaches may be applied for routine monitoring of Mediterranean reef fish communities, although mere empirical determinations of sufficient taxonomy seems to be not reliable, legitimizing the use of alternative methods based on null models. Guidelines for the careful use of species surrogacy in the ecological evaluation of MPAs on fish assemblages are provided.
ISSN: 0006-3207

hal-01174428
https://hal-univ-perp.archives-ouvertes.fr/hal-01174428
DOI : 10.1016/j.biocon.2015.06.002

Éditeur(s) : HAL CCSD
Résumé : Neotropical forests shelter an astonishing and underrated biodiversity. The integrity and stability of these natural ecosystems are threatened by human-induced environmental changes. Therefore, highlighting the determinants of ecosystem functioning, be they natural or anthropogenic, is a daunting but paramount scientific challenge. The intrinsic complexity of highly diversified ecosystems arouses both conceptual and logistical difficulties, which we handle, by manipulating tiny ecosystems, the tank bromeliads. The leaves of tank bromeliads form wells that hold rainwater and intercept leaf litter, allowing for a simple invertebrate aquatic community to thrive. These plants can be exhaustively sampled, are naturally replicated, and widely distributed.From local to biogeographic scales, this thesis aims at understanding how these communities respond to the natural heterogeneity of Amazonian forests, and at predicting the impacts of human-induced disturbances on the structure and functioning of these communities, using in situ and lab experiments. Particular focus is attributed to the influence of some aspects of climate changes (e.g., warming, and various precipitations scenarios) on individual physiology, behavior, and trophic interactions.
Les forêts néotropicales accueillent une importante biodiversité encore méconnue. L’intégrité des écosystèmes naturels est menacée par les changements environnementaux (e.g., réchauffement climatique, destruction des habitats), par conséquent, identifier les facteurs structurants, naturels et anthropiques, du fonctionnement des écosystèmes, représente un défi scientifique crucial. L’inhérente complexité de ces milieux diversifiés pose de nombreux problèmes conceptuels et logistiques comme un échantillonnage exhaustif et/ou l’identification des espèces. Les broméliacées à réservoirs sont des écosystèmes miniatures adéquats pour pallier ces difficultés, car elles retiennent de l’eau de pluie et accumulent de la matière organique au creux de leurs feuilles, permettant ainsi de supporter des réseaux trophiques simples d’invertébrés aquatiques. Elles peuvent être échantillonnées exhaustivement, ont une forte abondance locale, et une large aire de répartition. De l’échelle locale à biogéographique, les travaux de cette thèse visent d’abord à comprendre comment ces communautés se structurent en réponse à l’hétérogénéité naturelle des forêts amazoniennes (e.g., ouverture de la canopée, fluctuations climatiques saisonnières), puis tente de prédire, par le biais d’expérimentations in situ et au laboratoire les réponses structurelles et fonctionnelles de ces communautés à divers scénarios de changement climatique. Une attention particulière a été portée sur l’impact de la température et des précipitations sur la physiologie et le comportement d’espèces clefs, et sur les interactions trophiques au sein des communautés.
https://tel.archives-ouvertes.fr/tel-01405025

NNT : 2015YANE0003
tel-01405025
https://tel.archives-ouvertes.fr/tel-01405025
https://tel.archives-ouvertes.fr/tel-01405025/document
https://tel.archives-ouvertes.fr/tel-01405025/file/These-DEZERALD-Diffusion.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Two in situ concrete/claystone interfaces were sampled at the laboratory level in the Andra Meuse/Haute Marne (France) Underground Research Laboratory (URL) in order to study five years of interactions between Callovian-Oxfordian (COx) claystone and two cementitious materials (concrete bottom slab and shotcrete on the walls of the main gallery), with a specific focus on sulfur. Combined mineralogical, chemical and sulfur isotopic investigations were carried out to define the degree of the perturbation of the sulfur system in the claystone and in both the cementitious materials. At both interfaces, results show that the main perturbation on the claystone side is the formation of scarce μm-sized gypsum, the sulfur content of which is essentially derived from pyrite oxidation. The distribution of gypsum is highly correlated with the fissure network of the damaged zone due to excavation of the gallery. Its presence is also often associated with a loss of cohesion of the concrete/claystone interface. Due to the small amounts of gypsum and its μm-size, measurements were performed by ion microprobe. Adaptations were needed on account of the reactivity of gypsum and sulfates in general under the beam. The use of ion microprobe analysis provided evidence of high local isotopic heterogeneity that could be attributed to kinetic fractionation effects. Some analyses suggest a minor contribution of dissolved sulfates in pore water of claystone and possibly of concrete. The perturbation on the concrete side is marked by a significant increase in the bulk sulfur content within three millimeters of the interface with the claystone, showing a sulfur gradient from claystone to concrete. The main objective of this work was to define the extent of the chemical and mineralogical perturbations, taking into account in situ URL conditions, i.e. hydrodynamic conditions (shotcrete sprayed on the gallery walls and subjected to ventilation of the galleries), damaged zone of claystone induced by excavation and multi-scale heterogeneity. This identifies the relevant parameters to better constrain predictive reactive transport models of concrete/claystone interactions at a realistic scale.
ISSN: 0079-1946

hal-01055790
https://hal-brgm.archives-ouvertes.fr/hal-01055790
DOI : 10.1016/j.pce.2014.01.003

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
Measurements of branch xylem density, D_x, were made for 1466 trees representing 503 species, sampled from 80 sites across the Amazon basin. Measured values ranged from 240 kg m^?3 for a Brosimum parinarioides from Tapajos in West Pará, Brazil to 1130 kg m^?3 for an Aiouea sp. from Caxiuana, Central Pará, Brazil. Analysis of variance showed significant differences in average D_x across the sample plots as well as significant differences between families, genera and species. A partitioning of the total variance in the dataset showed that geographic location and plot accounted for 33% of the variation with species identity accounting for an additional 27%; the remaining "residual" 40% of the variance accounted for by tree to tree (within species) variation. Variations in plot means, were, however, hardly accountable at all by differences in species composition. Rather, it would seem that variations of xylem density at plot level must be explained by the effects of soils and/or climate. This conclusion is supported by the observation that the xylem density of the more widely distributed species varied systematically from plot to plot. Thus, as well as having a genetic component branch xylem density is a plastic trait that, for any given species, varies according to where the tree is growing and in a predictable manner. Exceptions to this general rule may be some pioneers belonging to Pourouma and Miconia and some species within the genera Brosimum, Rinorea and Trichillia which seem to be more constrained in terms of this plasticity than most species sampled as part of this study.
ISSN: 1810-6277

hal-00298004
https://hal.archives-ouvertes.fr/hal-00298004
https://hal.archives-ouvertes.fr/hal-00298004/document
https://hal.archives-ouvertes.fr/hal-00298004/file/bgd-5-2003-2008.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Polycyclic aromatic hydrocarbons (PAHs), such as benzo[a]pyrene (B[a]P), are widely distributed environmental contaminants exerting toxic effects such as genotoxicity and carcinogenicity, mainly associated with aryl hydrocarbon receptor (AhR) activation and the subsequent induction of cytochromes P-450 (CYP) 1-metabolizing enzymes. We previously reported an up-regulation of AhR expression and activity in primary cultures of human T lymphocyte by a physiological activation. Despite the suggested link between exposure to PAHs and the risk of lymphoma, the potential of activated human T lymphocytes to metabolize AhR exogenous ligands such as B[a]P, and produce DNA damage has not been investigated. In the present study, we characterized the genotoxic response of primary activated T lymphocytes to B[a] P. We demonstrated that, following T lymphocyte activation, B[a]P treatment triggers a marked increase in CYP1 expression and activity generating, upon metabolic activation, DNA adducts and double-strand breaks (DSBs) after a 48-h treatment. At this time point, B[a]P also induces a DNA damage response with ataxia telangiectasia mutated kinase activation, thus producing a p53-dependent response and T lymphocyte survival. B[a]P activates DSB repair by mobilizing homologous recombination machinery but also induces gene mutations in activated human T lymphocytes which could consequently drive a cancer process. In conclusion, primary cultures of activated human T lymphocytes represent a good model for studying genotoxic effects of environmental contaminants such as PAHs, and predicting human health issues.
ISSN: 0006-2952

hal-01560145
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01560145
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01560145/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01560145/file/Liamin%20et%20al.%20-%20Benzo%5Ba%5Dpyrene-induced%20DNA%20damage%20associated%20with%20.pdf
DOI : 10.1016/j.bcp.2017.04.025

Éditeur(s) : HAL CCSD
Résumé : International audience
The deformation of natural systems in response to subsurface water storage and redistribution provides insightsinto the main water flow path within heterogeneous systems, including the role of faults or fractures. A longbaseline tiltmeter was installed in the low-noise underground laboratory of Rustrel (LSBB) to study the responseof the Fontaine de Vaucluse (FDV) karst hydrosystem to water cycle. Tilt data and piezometric levels recorded in aborehole close to the LSBB show a strong correlation with the discharge of the system observed at the FDV spring30 km away. Over several months, tilt data were recorded on three base lines, thus allowing, for the first time,to study the tilt gradient variation that appears homogeneous. Such information provides a significant constrainton hydrological processes leading to the measured deformation. Several deformation models were tested usingthe ADELI code to estimate the type of hydro-mechanical structure that could reproduce the measured tilt andits gradient. On one hand, models show that uniform loading at the surface produces a much smaller signal thanobserved on measured data. On the other hand, the deformation related to the filling of a fracture following aprecipitation event requires unrealistic fracture size. Finally, we found that a suitable hydro-mechanical modelcorresponds to the loading of numerous fractures at the interface between the saturated and unsaturated zones. Sucha configuration predicts a tilt distribution in agreement with observations. This study suggests that tilt networksinto a karst system should provide key observation for deciphering hydrological processes
Geophysical Research Abstracts
Vienne, Austria

insu-01308594
https://hal-insu.archives-ouvertes.fr/insu-01308594

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
No major earthquake occurred in North Chile since the 1877 Mw 8.6 subduction earthquake that produced a huge tsunami. However, geodetic measurements conducted over the last decade in this area show that the upper plate is actually deforming, which reveals some degree of locking on the subduction interface. This accumulation of elastic deformation is likely to be released in a future earthquake. Because of the long elapsed time since 1877 and the rapid accumulation of deformation (thought to be 6-7 cm yr−1), many consider this area is a mature seismic gap where a major earthquake is due and seismic hazard is high. We present a new Global Positioning System (GPS) velocity field, acquired between 2008 and 2012, that describes in some detail the interseismic deformation between 18°S and 24°S. We invert for coupling distribution on the Nazca-South America subduction interface using elastic modelling. Our measurements require that, at these latitudes, 10 to 12 mm yr−1 (i.e. 15 per cent of the whole convergence rate) are accommodated by the clockwise rotation of an Andean block bounded to the East by the subandean fold-and-thrust belt. This reduces the accumulation rate on the subduction interface to 56 mm yr−1 in this area. Coupling variations on the subduction interface both along-strike and along-dip are described. We find that the North Chile seismic gap is segmented in at least two highly locked segments bounded by narrow areas of weak coupling. This coupling segmentation is consistent with our knowledge of the historical ruptures and of the instrumental seismicity of the region. Intersegment zones (Iquique, Mejillones) correlate with high background seismic rate and local tectonic complexities on the upper or downgoing plates. The rupture of either the Paranal or the Loa segment alone could easily produce a Mw 8.0-8.3 rupture, and we propose that the Loa segment (from 22.5°S to 20.8°S) may be the one that ruptured in 1877.
ISSN: 0956-540X

hal-00941279
https://hal.archives-ouvertes.fr/hal-00941279
DOI : 10.1093/gji/ggt183

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This paper focuses on the analyses of the clastic sedimentary infill of the Coastal Plain of Eastern Mexico, which initiated synchronously with the Laramide orogeny in the vicinity of the Golden Lane. Results of these analyses are used as boundary conditions for calibrating/interpreting seismic profiles across more distal depocenters in the offshore of the Gulf of Mexico, from the sea shore and continental slope in the west to the abyssal plain in the east. The objective of the study is to better predict the reservoir distribution in the Deep offshore Basin of the Gulf of Mexico (DBGM), in order to explore for petroleum. The Coastal Plain is underlain by three morpho-tectonic domains: the tectonic front of the Sierra Madre Orientale (SMO), the Chicontepec deep water flexural basin, and the Tuxpan Platform (also known as the Golden Lane). Each domain is characterized by a distinct, dominantly siliciclastic Cenozoic lithostratigraphy. After a Jurassic rifting episode, followed by thermal subsidence, the oceanic basin and its western passive margin were deformed during the Upper Cretaceous and Paleogene, by far field stresses associated with the Cordilleran-Laramide Orogeny. Starting in the Late Cretaceous-Early Paleogene and during the Early Eocene, the tectonic load associated with the Laramide Orogen (Sierra Madre Oriental, SMO) caused flexural subsidence of the foreland located under the Coastal Plain. During this period, a massive transfer of siliciclastic sediments occurred from the Laramide foothills into the adjacent foreland. Sediments were eroded of the Sierra Madre tectonic wedge. Loading by these sediments pushed source units associated with the former passive margin down ward. The first syn-tectonic sediments of the Laramide orogeny were turbiditic silt layers in submarine fans which record also numerous collapse episodes and gravity slides. During the Late Eocene and Oligocene, the flexural subsidence stopped in the hinterland, whereas the subsidence of the passive margin resumed. This resulted in a change in the overall sedimentary architecture of the basin. Paleo-highs and reefs facies of the Golden Lane were flooded. Clastics by-passed the reefs and progradational clastic stratification formed as sediment moved towards the DBGM in the east. The final depositional environment of the continental platform/Coastal Plain became deltaic, marked by a succession of sand bars, levees and channels systems. From Miocene times onward, a system of gravitational listric faults developed near the platform to slope transition, resulting in a coeval compressional system at the transition between the slope and the abyssal plain. This system is driven by sediments charge. Because the sedimentation rate is larger than the subsidence, a large amount of clastics and slumped sediments are deposited in hangingwall basins.
ISSN: 0264-8172

hal-00424586
https://hal.archives-ouvertes.fr/hal-00424586
DOI : 10.1016/j.marpetgeo.2008.03.009