Éditeur(s) : Elsevier Science Bv
Résumé : In tropical shrimp ponds, the increasing of feed input, concomitantly with the stocking shrimp biomass, induces an eutrophication of the ecosystem. Although difficult to maintain, its stability is required to guarantee the success of the culture. A 110-day period of phytoplankton and bacterioplankton stock and dynamics in an earthen pond (1.2 ha area, 1 m depth) was monitored using flow cytometry to provide baseline information on community characteristics and ecosystem instability. Seven autotrophic cell types were identified over the whole sampling period. Prokaryotic cells included Synechococcus sp., a group named UNK which presented an atypical new flow cytometric signature and picoeukaryotes (PEUK). Nanophytoplankton cells were represented by 4 groups: NAN1, NAN2, NAN3 and Cryptophytes. During the first part of the survey, picophytoplankton dominated the phytoplanktonic assemblage. The mean abundance of total cells (up to 8 x 10(6) cells mL(-1)) was among the highest recorded in marine and brackish waters. Bacterial abundance and production ranged from 0.8 to 5.1 x 10(7) cells mL(-1) and from 30 to 110 mu g C L-1 h(-1). A shift from pico to nanophytoplankton abundance was observed for a few days from d 96. During this period, heterotrophic bacteria production and abundance suddenly dropped, implying a change in the functioning of the microbial loop. This shift was concomitant with a significant shrimp mortality outbreak due to Vibrio penaeicida, the etiological agent of a disease known as Syndrome 93, which affects the shrimp industry in New Caledonia. This survey suggests that flow cytometric analysis could be used for the monitoring of aquaculture systems to improve our understanding of the complex phytoplankton and bacterial dynamics of these systems and its potential influence on disease development. (c) 2010 Elsevier B.V. All rights reserved.
Aquaculture (0044-8486) (Elsevier Science Bv), 2010-12 , Vol. 310 , N. 1-2 , P. 112-121

Droits : 2010 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00029/14068/11312.pdf
DOI:10.1016/j.aquaculture.2010.10.022
http://archimer.ifremer.fr/doc/00029/14068/

Éditeur(s) : HAL CCSD Elsevier
Résumé : LA-ICP-MS and SIMS U–Pb analyses have been performed on detrital zircon grains from four heavy mineral rich metasediments collected at different levels of the Nathorst Land Group (Eleonore Bay Supergroup, Greenland). Zircons from high-grade samples collected in the sillimanite and migmatite zones exhibit modifications to their structure, which are lacking in grains from a low-grade sample (0.3 GPa and 350–400 °C). In the sillimanite zone (0.5 GPa, 650 °C), thin discontinuous rims (<20 μm) plating detrital zircon grains document a metamorphic overgrowth during the Caledonian event dated at 428 ± 25 Ma (2σ). In the migmatite zone (0.4 GPa, 700 °C), zircons underwent severe recrystallisation processes but no new zircon growth. Ilmenite, which constitutes over 50% of the heavy mineral layers, underwent recrystallisation in both high-grade samples and is likely to represent the main source of Zr available for growth of zircon rims in the sillimanite zone. However, in the migmatite zone sample, the metamorphic conditions allowed titanite overgrowth around ilmenite, which acted as a sink for Zr and inhibited new zircon growth. 207Pb/206Pb ages for 152 detrital zircons broadly range between 2800 and 990 Ma. The detrital zircon age signature is characterized by the large predominance of late Paleoproterozoic (1.85–1.60 Ga) grains in all analysed samples and by lesser amounts of Archean (2.7–2.8 Ga) and Mesoproterozoic (1.2–1.0 Ga) zircons. The overall age range indicates that detritus can be sourced from the Labradorian and Makkovikian provinces of northeastern Laurentia. The youngest grain analysed (987 ± 18 Ma) indicates that deposition took place during the Neoproterozoic, in a post-Grenvillian sedimentary environment and was likely coeval with the Mid-Neoproterozoic episode of aborted rifting that affected the eastern margin of Laurentia. The lack of detritus originating from Amazonia or Baltica, placed adjacent to Laurentia during the early stages of Rodinia fragmentation, suggests that these two continental landmasses did not constitute a topographic high during the Neoproterozoic or that the Mid-Neoproterozoic rifting opened toward an open ocean to the north of a combined Laurentia/Baltica, thus resulting in a general south to north direction of transport of the sediments.
ISSN: 0301-9268

hal-00407204
https://hal.archives-ouvertes.fr/hal-00407204
DOI : 10.1016/j.precamres.2007.01.002

Éditeur(s) : HAL CCSD European Geosciences Union (EGU)
Résumé : International audience
Climate models project that rising atmospheric carbon dioxide concentrations will increase the frequency and the severity of some extreme weather events. The flood events represent a major risk for populations and infrastructures settled on coastal lowlands. Recent studies of lagoon sediments have enhanced our knowledge on extreme hydrological events such as palaeo-storms and on their relation with climate change over the last millennium. However, few studies have been undertaken to reconstruct past flood events from lagoon sediments. Here, the past flood activity was investigated using a multi-proxy approach combining sedimentological and geochemical analysis of surfaces sediments from a southeastern Tunisian catchment in order to trace the origin of sediment deposits in the El Bibane Lagoon. Three sediment sources were identified: marine, fluvial and aeolian. When applying this multi-proxy approach on core BL12-10, recovered from the El Bibane Lagoon, we can see that finer material, a high content of the clay and silt, and a high content of the elemental ratios (Fe ∕ Ca and Ti ∕ Ca) characterise the sedimentological signature of the palaeo-flood levels identified in the lagoonal sequence. For the last century, which is the period covered by the BL12-10 short core, three palaeo-flood events were identified. The age of these flood events have been determined by 210Pb and 137Cs chronology and give ages of AD 1995 ± 6, 1970 ± 9 and 1945 ± 9. These results show a good temporal correlation with historical flood events recorded in southern Tunisia in the last century (AD 1932, 1969, 1979 and 1995). Our finding suggests that reconstruction of the history of the hydrological extreme events during the upper Holocene is possible in this location through the use of the sedimentary archives.
ISSN: 1814-9324

hal-01571962
https://hal.archives-ouvertes.fr/hal-01571962
https://hal.archives-ouvertes.fr/hal-01571962/document
https://hal.archives-ouvertes.fr/hal-01571962/file/affouri2017.pdf
DOI : 10.5194/cp-13-711-2017

Éditeur(s) : Copernicus Gesellschaft Mbh
Résumé : The sea surface salinity (SSS) measured from space by the Soil Moisture and Ocean Salinity (SMOS) mission has recently been revisited by the European Space Agency first campaign reprocessing. We show that, with respect to the previous version, biases close to land and ice greatly decrease. The accuracy of SMOS SSS averaged over 10 days, 100 x 100 km(2) in the open ocean and estimated by comparison to ARGO (Array for Real-Time Geostrophic Oceanography) SSS is on the order of 0.3-0.4 in tropical and subtropical regions and 0.5 in a cold region. The averaged negative SSS bias (-0.1) observed in the tropical Pacific Ocean between 5 degrees N and 15 degrees N, relatively to other regions, is suppressed when SMOS observations concomitant with rain events, as detected from SSM/Is (Special Sensor Microwave Imager) rain rates, are removed from the SMOS-ARGO comparisons. The SMOS freshening is linearly correlated to SSM/Is rain rate with a slope estimated to -0.14 mm(-1) h, after correction for rain atmospheric contribution. This tendency is the signature of the temporal SSS variability between the time of SMOS and ARGO measurements linked to rain variability and of the vertical salinity stratification between the first centimeter of the sea surface layer sampled by SMOS and the 5 m depth sampled by ARGO. However, given that the whole set of collocations includes situations with ARGO measurements concomitant with rain events collocated with SMOS measurements under no rain, the mean -0.1 bias and the negative skewness of the statistical distribution of SMOS minus ARGO SSS difference are very likely the mean signature of the vertical salinity stratification. In the future, the analysis of ongoing in situ salinity measurements in the top 50 cm of the sea surface and of Aquarius satellite SSS are expected to provide complementary information about the sea surface salinity stratification.
Ocean Science (1812-0784) (Copernicus Gesellschaft Mbh), 2013 , Vol. 9 , N. 1 , P. 183-192

Droits : Author(s) 2013. CC Attribution 3.0 License.
http://archimer.ifremer.fr/doc/00139/25073/23161.pdf
DOI:10.5194/os-9-183-2013
http://archimer.ifremer.fr/doc/00139/25073/

Éditeur(s) : HAL CCSD
Résumé : This work provides new constraints on the development and on the distribution of the deformation in the upper mantle and particularly beneath transform plate boundaries. USArray experiment and the remarkable increase of the dataset in California for the past ten years allowed us to scrutinize the lateral variations of the anisotropy in the vicinity of the San Andreas Fault zone. We have confirmed and increased the detection of two layers of anisotropy beneath this plate boundary. The first layer, located in the lithosphere, is related to the deformation induced at the fault, and the other one, located in the asthenosphere, is coherent with the anisotropy observed far from it, its origin is however less clear. We show that the deformation zone associated both to the San Andreas, Calaveras and Hayward Faults, is likely 40 km wide at 70 km depth. We then performed numerical thermomechanical modeling (ADELI) of the displacement of a transform plate boundary associated with the computation of the development of crystallographic fabrics using a viscoplastic selfconsistent approach (VPSC). We analyzed the distribution of the deformation in the model ant looked after the possible interactions at depth between deformation caused at surface by the strike-slip dynamic of the fault and the shearing at the base of the lithosphere caused by the horizontal displacement of the plates. Elastic properties derived from the crystallographic fabrics modeled, show that such interactions exist and induce, beneath the fault zone, a progressive rotation of the crystallographic fabrics with depth. Seismological signature of these smooth rotations is however not relevant with the presence of two anisotropic layers as proposed beneath California. We thus consider that a decoupling zone exists between the lithosphere and the asthenosphere beneath the California to account for the sharp separation between a lithospheric and an asthenospheric deformation. We furthermore estimate that anisotropy observed far form the San Andreas Fault in California cannot be explained only by the drag of the asthenosphere by the North America lithosphere as proposed in our article. Indeed, we can only expect few tenths of second of splitting delay from the anisotropic properties derived from the numerical modeling of a plate moving in the same direction and in the same velocity than the North American lithosphere only for 10 Ma of displacement. As delays observed in California rather reach 1.5 s, anisotropy in this region thus requires the existence of an active asthenospheric flow to be explained.
Le travail réalisé pendant cette thèse a permis d'apporter de nouvelles contraintes sur le développement et la distribution de la déformation dans le manteau supérieur et plus particulièrement au niveau des grandes limites de plaques décrochantes. Grâce à l'apport de l'expérience USArray et d'une dizaine d'années d'enregistrements sismologiques supplémentaires, nous avons pu étudier, de manière précise, les variations d'anisotropie dans le voisinage de la Faille de San Andreas. Nous avons confirmé et étendu l'observation de deux couches anisotropes sous cette limite de plaque. On y observe une première couche localisée dans la lithosphère marquant la déformation induite à la limite de plaque, et une autre, asthénosphérique, cohérente avec l'anisotropie observée loin de la faille et d'origine plus discutée. Nous avons montré que la zone de déformation associée aux failles de San Andreas, Calaveras et d'Hayward a, vraisemblablement, une largeur d'au moins 40 kilomètres en base de lithosphère, sous chacune de ces failles. Nous avons ensuite procédé à la modélisation thermomécanique (ADELI) de la migration d'une limite de plaques décrochante couplée à une modélisation du développement de fabriques cristallographiques par une approche viscoplastique auto-cohérente (VPSC). Ceci nous a permis d'y observer le développement de la déformation et les conséquences des possibles interactions entre la déformation décrochante en surface et le cisaillement en base de lithosphère dû au déplacement horizontal des plaques. Les propriétés élastiques déduites des fabriques cristallographiques modélisées montrent que de telles interactions existent et provoquent, sous la limite de plaques, une rotation des orientations cristallographiques avec la profondeur. Le signal associé à ces rotations progressives n'est toutefois pas cohérent avec la présence de deux couches d'anisotropie comme proposée sous la faille de San Andreas. Nous pensons par conséquent qu'il existe, sous la Californie, une zone de découplage entre la lithosphère et l'asthénosphère, permettant d'individualiser une déformation lithosphérique d'une déformation asthénosphérique. Nous estimons, en outre, que l'anisotropie observée dans l'asthénosphère sous la Californie ne peut être expliquée seulement par le cisaillement induit par le déplacement de la lithosphère Nord Amérique. En effet, les propriétés anisotropes obtenues par modélisation à partir d'une plaque se déplaçant dans une direction et une vitesse proche de celle de la plaque Amérique du Nord montrent qu'on ne peut espérer guère plus que quelques dixièmes de seconde de délai au bout de 10 Ma de déplacement. Les déphasages mesurés en Californie étant de l'ordre de 1,5 s, il est donc nécessaire d'invoquer la présence d'écoulements mantelliques actifs sous cette région.
https://tel.archives-ouvertes.fr/tel-00767124

tel-00767124
https://tel.archives-ouvertes.fr/tel-00767124
https://tel.archives-ouvertes.fr/tel-00767124/document
https://tel.archives-ouvertes.fr/tel-00767124/file/theseBonnin.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Big storm events represent a major risk for populations and infrastructures settled on coastal lowlands. In the Western Mediterranean, where human societies colonized and occupied the coastal areas since the Ancient times, the variability of storm activity for the past three millennia was investigated with a multi-proxy sedimentological and geochemical study from a lagoonal sequence. Mappings of the geochemistry and magnetic susceptibility of detrital sources in the watershed of the lagoon and from the coastal barriers were undertaken in order to track the terrestrial or coastal/marine origin of sediments deposited into the lagoon. The multi-proxy analysis shows that coarser material, low magnetic susceptibility, and high strontium content characterize the sedimentological signature of the paleostorm levels identified in the lagoonal sequence. A comparison with North Atlantic and Western Mediterranean paleoclimate proxies shows that the phases of high storm activity occurred during cold periods, suggesting a climatically-controlled mechanism for the occurrence of these storm periods. Besides, an in-phase storm activity pattern is found between the Western Mediterranean and Northern Europe. Spectral analyses performed on the Sr content revealed a new 270-year solar-driven pattern of storm cyclicity. For the last 3000 years, this 270-year cycle defines a succession of ten major storm periods (SP) with a mean duration of 96 ± 54 yr. Periods of higher storm activity are recorded from >680 to 560 cal yr BC (SP10, end of the Iron Age Cold Period), from 140 to 820 cal yr AD (SP7 to SP5) with a climax of storminess between 400 and 800 cal yr AD (Dark Ages Cold Period), and from 1230 to >1800 cal yr AD (SP3 to SP1, Little Ice Age). Periods of low storm activity occurred from 560 cal yr BC to 140 cal yr AD (SP9 and SP8, Roman Warm Period) and from 820 to 1230 cal yr AD (SP4, Medieval Warm Period).
ISSN: 0277-3791

hal-01277796
https://hal.archives-ouvertes.fr/hal-01277796
DOI : 10.1016/j.quascirev.2015.10.009

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Le présent document a pour objet d’évaluer les implications potentielles sur les économies des états de la Caraïbe et de celles des DFA (Guadeloupe, Martinique, Guyane) du volet commercial de l’accord de partenariat économique (APE) signé en octobre 2008 entre les pays du CARIFORUM et l’Union européenne. Deux modèles ont été utilisés à cet effet : un modèle d’équilibre général calculable (le modèle GTAP), appliqué aux économies du CARIFORUM, et un modèle de gravité appliqué à celles des DFA. Les simulations issues du modèle d’équilibre général calculable montrent que dans l’hypothèse d’une pleine réciprocité (sans droits ou quotas entre les deux partenaires), les résultats dans le cas des pays du CARIFORUM seraient contrastés. Ils seraient positifs pour certains pays et secteurs de production, et modestes pour d’autres. Ils se traduiraient par une baisse sensible des recettes douanières pour la plupart des pays et par une dégradation de la balance commerciale pour les plus vulnérables. Enfin, la croissance et le bien-être des habitants de cette zone subiraient une très légère augmentation (0,04%). Concernant les DFA, les résultats issus de l’application du modèle de gravité révèlent que ces régions ultrapériphériques de l’Europe combinent, en raison de la structure de leur économie, de celle de leurs coûts de production et surtout à cause des liens institutionnels et économiques très étroits qu’elles entretiennent avec la France et donc avec l’Europe un certain nombre de facteurs pénalisants, susceptibles d’entraver le potentiel de commerce qu’elles pourraient développer avec les pays ACP voisins dans le cadre de cet APE.
The present paper seeks to provide an assessment of the likely implications of the CARIFORUM-EU Economic Partnership Agreement (EPA) on economy of Caribbean states and French Caribbean Outermost Regions (FCORs). Two models are used for that a computable general equilibrium model (GTAP model), applied to CARIFORUM countries, and a gravity model framework applied to French Caribbean Outermost Regions. The main findings from application of the computable general equilibrium model can be outlined as follows in case of full reciprocity between the partners in merchandise trade, the results show that impacts are contrasted among the economies. The effects appear positive for some countries, sectors and negative for the others. Tariff reductions will translate into a decline in government revenue and a degradation of their balance of payments. The well-being of CARIFORUM households has improved very lightly (0.04%). On the other hands, the application of the gravity model framework reveals several barriers to regional trade between French Caribbean Outermost Regions and their neighbours, particularly their strong institutional and economic links with continental France, responsible for a high labour cost and a lack of autonomy with regard to international trade. The study also highlights that French language is an obstacle to trade across the Caribbean, due to the fact it is a minority in this region, as well as absence of FCORs in main economic and trade agreements of Caribbean. Finally the paper finds that there is high degree of similarity of exports among the countries and territories in the Caribbean.
Caraïbes

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6928
http://journals.openedition.org/etudescaribeennes/6928

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
Rainbow is a dome-shaped massif at the 36°14′N nontransform offset along the Mid-Atlantic Ridge. It hosts three ultramafic-hosted hydrothermal sites: Rainbow is active and high temperature; Clamstone and Ghost City are fossil and low temperature. The MoMARDREAM cruises (2007, 2008) presented here provided extensive rock sampling throughout the massif that constrains the geological setting of hydrothermal activity. The lithology is heterogeneous with abundant serpentinites surrounding gabbros, troctolites, chromitites, plagiogranites, and basalts. We propose that a W dipping detachment fault, now inactive, uplifted the massif and exhumed these deep-seated rocks. Present-day deformation is accommodated by SSW-NNE faults and fissures, consistent with oblique teleseismic focal mechanisms and stress rotation across the discontinuity. Faults localize fluid flow and control the location of fossil and active hydrothermal fields that appear to be ephemeral and lacking in spatiotemporal progression. Markers of high-temperature hydrothermal activity (∼350°C) are restricted to some samples from the active field while a more diffuse, lower temperature hydrothermal activity (<220°C) is inferred at various locations through anomalously high As, Sb, and Pb contents, attributed to element incorporation in serpentines or microscale-sulfide precipitation. Petrographic and geochemical analyses show that the dominant basement alteration is pervasive peridotite serpentinization at ∼160–260°C, attributed to fluids chemically similar to those venting at Rainbow, and controlled by concomitant alteration of mafic-ultramafic units at depth. Rainbow provides a model for fluid circulation, possibly applicable to hydrothermalism at oceanic detachments elsewhere, where both low-temperature serpentinization and magmatic-driven high-temperature outflow develop contemporaneously, channeled by faults in the footwall and not along the detachment fault.
ISSN: 1525-2027

hal-01115281
https://hal.archives-ouvertes.fr/hal-01115281
https://hal.archives-ouvertes.fr/hal-01115281/document
https://hal.archives-ouvertes.fr/hal-01115281/file/Andreani_et_al-2014-Geochemistry%2C_Geophysics%2C_Geosystems.pdf
DOI : 10.1002/2014GC005269

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Continuous Global Positioning System (CGPS) position time series from eastern North America constrain the pattern and magnitude of regional crustal deformation. Initial analysis delineates consistent uplift patterns, as expected from glacial isostatic adjustment (GIA) predictions, but the associated horizontal deformation is not definitive, in part due to the short time periods for a significant number of the available stations. We employ an eigenpattern decomposition in order to define a unique, finite set of deformation patterns for this continuous GPS data. Similar in nature to the empirical orthogonal functions historically employed in the analysis of atmospheric and oceanographic phenomena, the method derives the eigenvalues and eigenstates from the diagonalization of the correlation matrix using a Karhunen-Loeve expansion (KLE). The KLE technique is used to identify the important modes in both time and space for the CGPS data, modes that potentially include signals such as horizontal and vertical GIA, tectonic strain, and seasonal effects. Here we filter both the vertical and horizontal velocity patterns on different spatiotemporal scales in order to study the potential geophysical sources, after the removal of correlated and random noise. The method is successful in disaggregating the linear vertical signal from more variable and less spatially correlated signals. The vertical and horizontal results are compared to the predictions of the ICE-3G GIA loading model with a number of plausible mantle viscosity profiles. The horizontal velocity analysis allows for qualitative differentiation between several potential GIA models and suggests that, with longer time series, this technique can be employed to remove correlated noise and improve estimates of crustal strain patterns and their sources.
ISSN: 0033-4553

hal-00795454
https://hal.archives-ouvertes.fr/hal-00795454
DOI : 10.1007/s00024-011-0420-1

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
A temporary network of 10 broad-band seismic stations has been installed in French Polynesia for the Polynesian Lithosphere and Upper Mantle Experiment (PLUME). All the seismic stations were installed either on volcanic islands or on atolls of the various archipelagos of French Polynesia in a manner which complements the geographic coverage provided by the regional permanent stations. The primary aim of PLUME is to image the upper mantle structures related to plate motion and hotspot activity. However, because of its proximity to all sites, the ocean is responsible for a high level of noise in the seismic data and we show that these data can also be used to analyse ocean wave activity. The power spectral density (PSD) analyses of the seismic data recorded in French Polynesia show clear peaks in the 0.05– 0.10 Hz band (periods between 10 and 20 s), which corresponds to swell frequencies. Clear peaks in this frequency band are also observed in infrasonic data recorded on Tahiti. Ground motion analysis shows that the swell-related seismic noise (SRSN) is linearly polarized in the horizontal plane and its amplitude decreases rapidly with the distance from the shore. The microseismic and the infrasonic 'noise' amplitudes show very similar variations from station to station and both are strongly correlated with the swell amplitudes predicted by the National Oceanic and Atmospheric Administration (NOAA), wind-forced, 'WaveWatch' models. The swell direction can be estimated from SRSN polarization analysis but this has to be done with care since, for some cases, the ground motions are strongly controlled by the islands' anisometric shapes and by swell refraction processes. We find cases, however, such as Tahiti or roughly circular Tuamotu atolls, where the azimuth of the swell is in good agreement with the seismic estimates. We, therefore, demonstrate that the SRSN and the infrasonic signal observed in French Polynesia can be used in such cases as a proxy for swell amplitude and azimuth. From the continuous analysis of the data recorded in 2003 at the permanent seismic station PPTL in Tahiti, transfer functions have been obtained. This could provide a way to quantify the swell activity during the last two decades and, therefore, assist in the investigation of climate changes.
ISSN: 0956-540X

hal-01388809
http://hal.univ-reunion.fr/hal-01388809
http://hal.univ-reunion.fr/hal-01388809/document
http://hal.univ-reunion.fr/hal-01388809/file/Barruol_swell_GJI2006.pdf
DOI : 10.1111/j.1365-246X.2006.02871.x

Éditeur(s) : HAL CCSD SAGE Publications (UK and US)
Résumé : International audience
Molecular evolutionary analysis is an efficient method to predict and/or validate amino acid substitutions that could lead to a genetic disease and to highlight residues and motifs that could play an important role in the protein structure and/or function. We have applied such analysis to amelotin (AMTN), a recently identified enamel protein in the rat, mouse, and humans. An in silico search for AMTN provided 42 new mammalian sequences that were added to the 3 published sequences with which we performed the analysis using a dataset representative of all lineages (circa 220 million years of evolution), including 2 enamel-less species, sloth and armadillo. During evolution, of the 209 residues of human AMTN, 17 were unchanged and 34 had conserved their chemical properties. Substituting these important residues could lead to amelogenesis imperfecta (AI). Also, AMTN possesses a well-conserved signal peptide, 2 conserved motifs whose function is certainly important but unknown, and a putative phosphorylation site (SXE). In addition, the sequences of the 2 enamel-less species display mutations revealing that AMTN underwent pseudogenization, which suggests that AMTN is an enamel-specific protein.
ISSN: 0022-0345

hal-01545488
https://hal.archives-ouvertes.fr/hal-01545488
DOI : 10.1177/0022034512460551

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Despite the unique nature of endemic species, their origin and population history remain poorly studied. We investigated the population history of 28 coral reef fish species, close related, from the Gambier and Marquesas Islands, from five families, with range size varying from widespread to small-range endemic. We analyzed both mitochondrial and nuclear sequence data using neutrality test and Bayesian analysis (EBSP and ABC). We found evidence for demographic expansions for most species (24 of 28), irrespective of range size, reproduction strategy or archipelago. The timing of the expansions varied greatly among species, from 8,000 to 2,000,000 years ago. The typical hypothesis for reef fish that links population expansions to the Last Glacial Maximum fit for 14 of the 24 demographic expansions. We propose two evolutionary processes that could lead to expansions older than the LGM: (a) we are retrieving the signature of an old colonization process for widespread, large-range endemic and paleoendemic species or (b) speciation; the expansion reflects the birth of the species for neoendemic species. We show for the first time that the demographic histories of endemic and widespread reef fish are not distinctly different and suggest that a number of processes drive endemism.
ISSN: 2045-2322

hal-01469339
https://hal-univ-perp.archives-ouvertes.fr/hal-01469339
https://hal-univ-perp.archives-ouvertes.fr/hal-01469339/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01469339/file/population%20expansions.pdf
DOI : 10.1038/srep40519

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
BACKGROUND: The use of pesticides and the related environmental contaminations can lead to human exposure to various molecules. In early-life, such exposures could be responsible for adverse developmental effects. However, human health risks associated with exposure to complex mixtures are currently under-explored. OBJECTIVE: THIS PROJECT AIMS AT ANSWERING THE FOLLOWING QUESTIONS: What is the influence of exposures to multiple pesticides on the metabolome? What mechanistic pathways could be involved in the metabolic changes observed? METHODS: Based on the PELAGIE cohort (Brittany, France), 83 pregnant women who provided a urine sample in early pregnancy, were classified in 3 groups according to the surface of land dedicated to agricultural cereal activities in their town of residence. Nuclear magnetic resonance-based metabolomics analyses were performed on urine samples. Partial Least Squares Regression-Discriminant Analysis (PLS-DA) and polytomous regressions were used to separate the urinary metabolic profiles from the 3 exposure groups after adjusting for potential confounders. RESULTS: The 3 groups of exposure were correctly separated with a PLS-DA model after implementing an orthogonal signal correction with pareto standardizations (R2 = 90.7% and Q2 = 0.53). After adjusting for maternal age, parity, body mass index and smoking habits, the most statistically significant changes were observed for glycine, threonine, lactate and glycerophosphocholine (upward trend), and for citrate (downward trend). CONCLUSION: This work suggests that an exposure to complex pesticide mixtures induces modifications of metabolic fingerprints. It can be hypothesized from identified discriminating metabolites that the pesticide mixtures could increase oxidative stress and disturb energy metabolism.
ISSN: 1932-6203

inserm-00863407
http://www.hal.inserm.fr/inserm-00863407
http://www.hal.inserm.fr/inserm-00863407/document
http://www.hal.inserm.fr/inserm-00863407/file/journal.pone.0064433.pdf
PUBMED : 23704985

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Ocean loading effects cause 3-D displacements large enough to affect space geodesy measurements either at the subdiurnal periods or at longer time scales by the means of spurious signals. GPS measurements, in turn, could provide local improvements of the models in coastal areas if their ability to precisely monitor such rapid displacements is assessed. In this paper, we use 105 days of continuous GPS measurements collected in 2004 in the French Brittany and Cotentin region to investigate: (1) the precision achieved by the GPS analysis on measuring 3-D subdiurnal displacements and amplitude and phase of the tidal constituents, (2) the quality of the most recent ocean tide model FES2004 in such a complex coastal context. Indeed, in this area, tide amplitudes are among the largest in the world (up to 16 cm of loading displacements on the vertical component) and are believed to show strong shallow-water tides. From a state of the art GPS analysis using the scientific GAMIT software over 2-h sessions, we test two independent strategies for the realization of the reference frame. The position time series are then compared with the displacements predicted by the FES2004 model applied on an elastic Earth model. The two sets of results are consistent with each other at the same level of agreement than with the predicted displacements, namely 3–5 mm on the horizontal components, 10 mm on the vertical. This assesses the capability of this technique for measuring 3-D ocean tide loading deformation. We validate the FES2004 model in the Brittany area, even though it slightly (2–7 mm) underestimates the three components amplitudes. With a harmonic analysis of the observed position time series, we obtain nevertheless an agreement at a submillimetre level for the M2, N2, O1, Q1 tidal constituents and at a millimetre level for the K1 and S2 tidal constituents. Moreover, we can extract a significant M4 load signal at the 95 per cent confidence level from the GPS time series at the stations located in the Mont St Michel area. The detection of other shallow-water constituents would be helpful to understand the amplitude deficit between the FES2004 predicted and GPS observed displacements.
ISSN: 0956-540X

insu-00335909
https://hal-insu.archives-ouvertes.fr/insu-00335909
https://hal-insu.archives-ouvertes.fr/insu-00335909/document
https://hal-insu.archives-ouvertes.fr/insu-00335909/file/Vergnolle_GJI_08_revised.pdf
DOI : 10.1111/j.1365-246X.2008.03734.x

Résumé : La distribution actuelle des espèces d’arbres des forêts tropicales humides amazoniennes est le résultat de processus dynamiques sur lesquels les perturbations passées, d’origine climatique ou anthropique, peuvent avoir jouées un rôle majeur. Des outils génétiques actuels associés à des méthodes d’analyses puissantes permettent d’inférer et de dater l’empreinte génomique des évènements démographiques subits par les populations naturelles. Le but de cette thèse est de contribuer à une vision d’ensemble de l’évolution démographique de la forêt tropicale humide du plateau des Guyanes pendant le Quaternaire. J’ai d’abord étudié les propriétés des microsatellites (répétitions simple de séquences, SSR) et les limites de leurs applications en tant que marqueurs moléculaires en phylogéographie. Plusieurs allèles SSR contenu dans diverses populations de trois genres d’arbres différents ont été séquencés et le polymorphisme, porté par chaque partie des fragments ADN contenant des SSR, a été étudié. J’ai observé que la quantité de variation génétique était aussi importante dans les régions encadrant le microsatellite que dans le SSR lui-même. Ces régions ont contribué significativement à l’information phylogénétique et ont parfois été la principale source de différenciation entre les individus et les populations. Cette expérience m’a permis de choisir la meilleure stratégie à adopter pour traiter les données de variation génétique des SSR dans des modèles démographiques. J’ai ensuite utilisé ces marqueurs SSR et des méthodes ABC pour étudier l’impact local des occupations humaines précolombiennes sur les forêts en Guyane française. Les changements démographiques subis par des populations de quatre espèces d’arbres ont été comparés entre cinq sites occupés et quatre sites non perturbés. Les perturbations naturelles et induites par l’homme ont contribué à la mise en place de la diversité observée actuellement, comme le suggère des signatures d’effet fondateur détectées sur les sites perturbés ou non. Néanmoins, la taille des populations fondatrices semble être proportionnelle à l’impact humain estimé, indiquant que les perturbations anthropique ont induit un remplacement des populations plus important que les processus écologiques naturels. Pour terminer, j’ai mené une étude de démographie comparative d’espèces d’arbres tropicaux à l’échelle régionale de la Guyane française. Cinq scénarios démographiques ont été testés pour neuf populations de huit espèces en utilisant des microsatellites nucléaires et des séquences chloroplastiques. Les changements démographiques les plus récents détectés convergent vers une signature générale d’expansion de la forêt humide depuis probablement la dernière glaciation. Cela peut suggérer, soit que la composition des forêts du plateau des Guyanes était différente, ou que le couvert forestier était moins étendu. Ce résultat constitue le premier indice de changement passé, probablement d’origine climatique, subi par les communautés forestières du plateau des Guyanes ; qui n’avait jusque-là pas pu être testé avec des méthodes standards en raison d’un manque de fossiles. En conclusion, j’ai recueilli des preuves génétiques que les perturbations, à différents échelles de temps, ont marqué la structure et la composition génétique des forêts du plateau des Guyanes. L’application de ces méthodes à d’autres régions Néotropicales pourrait contribuer, à l’avenir, à reconstruire l’histoire écologique de la forêt amazonienne de façon détaillée.
The current tree species distribution in Amazonian tropical rainforests is the outcome of dynamic processes in which past perturbations, climatic or anthropogenic, may have played a major role. Currently available genetic tools associated with powerful analytical methods allow inferring and dating the genomic imprint of demographic events undergone by natural populations. The aim of my thesis is to contribute to an overview of the demographic evolution of the tropical rainforest in the Guiana shield during the Quaternary. I have first studied the properties of microsatellites or Simple sequence repeat (SSR) and the limits in their applications as molecular markers in phylogeography. Several SSR alleles in multiple populations of three divergent tree genera have been sequenced and the sources of polymorphisms, carried by each portion of SSR-containing DNA amplicons, have been broken apart. I have observed that the amount of variation was as large in flanking regions as in the SSR itself. The former contributed significantly to the phylogenetic information and sometimes was the main source of differentiation among individuals and populations. This experiment allowed me to choose the best strategy to treat SSR variation in demographic modeling. I have subsequently used SSR markers and ABC methods to study the impact of pre-Columbian human settlements at the local level on rainforests in French Guiana. Demographic changes undergone by populations of four tree species were compared between five settled and four undisturbed sites. Both natural turnover and human-induced disturbances appeared as shaping currently observed genetic diversity, with signatures of founder effect both at disturbed and undisturbed sites. Nevertheless, the size of founding populations appeared to be proportional to the estimated human impact, suggesting that human-made disturbance caused deeper population turnover than background ecological processes. Finally, I have conducted a comparative demography study of tropical tree species at the regional level across French Guiana. Five demographic scenarios have been tested for nine populations from eight species using both nuclear microsatellites and chloroplastic sequences. The most recent demographic signals detected converge on a global signature of expansion of the rainforest since probably the last glaciation. This finding can suggest either that the composition of the Guiana shield rainforests was different, or that its global extent was smaller, during earlier epochs of the Pleistocene than today. This result is the first firm indication of changes undergone by the forest communities of the Guiana shield in the distant climatic past – something which could not be tested with standard methods due to almost complete lack of fossil evidence. In conclusion, I have gathered genetic evidence that disturbances, both in historical and geological times, have marked the structure and composition of forests in the Guiana shield.The extensive application of these methods to other regions of the Neotropics maycontribute, in the future, to the detailed reconstruction of the ecological history ofAmazonian forests.

http://www.theses.fr/2012AGUY0568/document

Éditeur(s) : HAL CCSD
Résumé : IGARSS 2015, Milan, ITA, 26-/07/2015 - 31/07/2015
International audience
LiDAR remote sensing has been shown to be a good technique for the estimation of forest parameters such as canopy heights and aboveground biomass. Whilst airborne LiDAR data are in general very dense but only available over small areas due to the cost of their acquisition, spaceborne LiDAR data acquired from the Geoscience Laser Altimeter System (GLAS) have a coarser acquisition density associated with a global cover. It is therefore valuable to analyze the integration relevance of canopy heights estimated from LiDAR sensors with ancillary data such as geological, meteorological, and phenological variables in order to propose a forest canopy height map with good precision and high spatial resolution.In this study, canopy heights extracted from both airborne and spaceborne LiDAR, were first extrapolated from available environmental data. The estimated canopy height maps using random forest (RF) regression from the airborne or GLAS calibration datasets showed similar precisions (RMSE better than 6.5 m). In order to improve the precision of the canopy height estimates regression-kriging (kriging of RF regression residuals) was used. Results indicated an improvement in the RMSE (decrease from 6.5 to 4.2 m) for the regression-kriging maps from the GLAS dataset, and from 5.8 to 1.8 m for the regression-kriging map from the airborne LiDAR dataset.
Geoscience and Remote Sensing Symposium (IGARSS), 2015 IEEE International
Milan, Italy

hal-01244677
https://hal.archives-ouvertes.fr/hal-01244677
https://hal.archives-ouvertes.fr/hal-01244677/document
https://hal.archives-ouvertes.fr/hal-01244677/file/mt2015-pub00044297.pdf
DOI : 10.1109/IGARSS.2015.7326729

Éditeur(s) : HAL CCSD
Résumé : A section of ancient fast-spreading ocean crust was sampled at Wadi Gideah, located in the Wadi Tayin Massif of the Oman ophiolite. This sample suite was used for generating a coherent data set combining various petro-geochemical and structural investigations, with the aim of building a reference section for advancing our understanding of crustal accretion processes at fast-spreading mid-ocean ridges. Additionally, this study focuses on one outcrop that represents part of the fossil axial melt lens (AML).Major and trace element analyses reveal a trend of chemical evolution up section in the lower crust, with a marked difference between the layered gabbros and the foliated gabbros above. Petrological modeling shows that the chemical evolution up section can be produced by hydrous fractionation crystallization, with melt H2O contents of ~0.8 wt% and 0.8 to 1.2 wt% for the lower and upper crust, respectively. Together with the observed very steep bulk Zr/Hf vs. Zr gradient, high F and Cl content of magmatic amphibole, general Nb-Ta depletion of melts compared with NMORB, and high Sr87/Sr86 ratio compared with modern fast-spread crust, this suggests that Wadi Gideah layered gabbros were accreted by crystallization of ascending melts in sills, in a context of subduction initiation. The distinct changes in chemical trends and average grain size at the layered to foliated gabbro transition are tentatively explained by enhanced hydrothermal cooling deeper than the AML. The gabbro/dike transition displays complex structural and lithological relationships that, together with fractional crystallization modeling, point to episodic vertical movements of the AML. Plagioclase crystallographic preferred orientations (CPO) measured over the whole gabbro section are always consistent with magmatic flow. The CPO strength generally increases downward, with more scattering in the layered gabbro section. From the top to the bottom of the layered gabbros, CPO become progressively more prolate, possibly reflecting increasing shear induced by active mantle flow underneath.Wadi Gideah lower crust recorded a formation history consistent with a hybrid accretion model, combing several processes such as downward magmatic flow and/or upward melt migration in the upper foliated gabbros, sill intrusions in the layered gabbros, and deep hydrothermal circulation. The latter was presumably focused in channels, preserved today as several, up to 100 m wide zones of extensively altered former layered gabbro, cross-cutting the magmatic layering. These metagabbros display significantly higher Sr87/Sr86 ratio, late stage magmatic phases, and evidence for high temperature partial melting.
Une coupe d'ancienne croute océanique rapide a été échantillonnée dans le Wadi Gideah, situé dans le Massif de Wadi Tayin de l'Ophiolite d'Oman. Cette série d'échantillons a permis de générer un jeu de données cohérent, combinant des études pétro-géochimiques et structurales, dans le but de construire une coupe de référence pour mieux contraindre notre compréhension des processus d'accrétion crustale aux dorsales océaniques rapides. Ce travail intègre aussi l'étude détaillée d'un affleurement représentant en partie la lentille magmatique axiale (LMA) fossile.Les analyses d'éléments majeurs et traces révèlent une évolution chimique dans la croûte inférieure, avec une nette différence entre les gabbros lités et les gabbros foliés sus-jacents. La modélisation pétrologique montre que l'évolution chimique vers le haut peut être produite par cristallisation fractionnée hydratée, avec des teneurs en H2O des magmas de ~0.8 wt% dans la croute inférieure et 0.8 to 1.2 wt% dans la croute supérieure. Combiné aux forts gradients de Zr/Hf vs. Zr, aux teneurs élevées de F et Cl dans les amphiboles magmatiques, à l'appauvrissement général en Nb-Ta des magmas comparé aux NMORB, et aux rapports Sr87/Sr86 élevés comparés à la croûte rapide moderne, ceci suggère que les gabbros lités du Wadi Gideah ont été formés par la cristallisation des magmas ascendants dans des sills, dans un contexte d'initiation de subduction. Les changements de signature géochimique et de taille de grain à la transition entre gabbros lités et gabbros foliés témoignent possiblement d'un fort refroidissement hydrothermal plus profond que la LMA. La transition complexe filonien/gabbro montre des relations structurale et lithologiques complexes, qui, combinées o la modélisation de la cristallisation fractionnée, traduisent les mouvements verticaux épisodiques de la LMA. Les orientations préférentielles cristallographiques (OPC) des plagioclases mesurées sur l'ensemble de la coupe dans les gabbros témoignent toujours d'une déformation magmatique. L'intensité des OPC a tendance à augmenter vers le bas, avec une plus forte variabilité dans les gabbros lités. Dans les gabbros lités, les OPC sont de plus en plus linéaires vers le bas, résultant possiblement d'un cisaillement plus fort induit par l'écoulement actif du manteau sous-jacent.La croûte inférieure dans le Wadi Gideah a enregistré une histoire compatible avec un modèle d'accrétion hydride, combinant plusieurs processus tels que l'écoulement magmatique vers le bas et/ou la migration de liquides magmatiques vers le haut dans les gabbros foliés supérieurs, l'intrusion de sills dans les gabbros lités, et une circulation hydrothermale profonde. Cette dernière était probablement concentrée dans des chenaux, préservés aujourd'hui sous la forme de plusieurs zones, dont l'épaisseur atteint 100 m, de gabbros lités fortement altérés, recoupant le litage magmatique. Ces métagabbros ont des rapports Sr87/Sr86 élevés, comportent des phases magmatiques tardives et montrent des évidences de fusion partielle.
https://hal.archives-ouvertes.fr/tel-01302675

tel-01302675
https://hal.archives-ouvertes.fr/tel-01302675
https://hal.archives-ouvertes.fr/tel-01302675/document
https://hal.archives-ouvertes.fr/tel-01302675/file/Th%C3%A8se_Tim-Mueller_2015.pdf

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
A temporary network of 10 broad-band seismic stations has been installed in French Polynesia for the Polynesian Lithosphere and Upper Mantle Experiment (PLUME). All the seismic stations were installed either on volcanic islands or on atolls of the various archipelagos of French Polynesia in a manner which complements the geographic coverage provided by the regional permanent stations. The primary aim of PLUME is to image the upper mantle structures related to plate motion and hotspot activity. However, because of its proximity to all sites, the ocean is responsible for a high level of noise in the seismic data and we show that these data can also be used to analyse ocean wave activity. The power spectral density (PSD) analyses of the seismic data recorded in French Polynesia show clear peaks in the 0.05– 0.10 Hz band (periods between 10 and 20 s), which corresponds to swell frequencies. Clear peaks in this frequency band are also observed in infrasonic data recorded on Tahiti. Ground motion analysis shows that the swell-related seismic noise (SRSN) is linearly polarized in the horizontal plane and its amplitude decreases rapidly with the distance from the shore. The microseismic and the infrasonic 'noise' amplitudes show very similar variations from station to station and both are strongly correlated with the swell amplitudes predicted by the National Oceanic and Atmospheric Administration (NOAA), wind-forced, 'WaveWatch' models. The swell direction can be estimated from SRSN polarization analysis but this has to be done with care since, for some cases, the ground motions are strongly controlled by the islands' anisometric shapes and by swell refraction processes. We find cases, however, such as Tahiti or roughly circular Tuamotu atolls, where the azimuth of the swell is in good agreement with the seismic estimates. We, therefore, demonstrate that the SRSN and the infrasonic signal observed in French Polynesia can be used in such cases as a proxy for swell amplitude and azimuth. From the continuous analysis of the data recorded in 2003 at the permanent seismic station PPTL in Tahiti, transfer functions have been obtained. This could provide a way to quantify the swell activity during the last two decades and, therefore, assist in the investigation of climate changes.
ISSN: 0956-540X

hal-01323691
http://hal.univ-reunion.fr/hal-01323691
http://hal.univ-reunion.fr/hal-01323691/document
http://hal.univ-reunion.fr/hal-01323691/file/Barruol_et_al_2006.pdf
DOI : 10.1111/j.1365-246X.2006.02871.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Over the last decades, numerous studies have emphasized the role of serpentinites in the subduction zone geodynamics. Their presence and role in subduction environments are recognized through geophysical, geochemical and field observations of modern and ancient subduction zones and large amounts of geochemical database of serpentinites have been created. Here, we present a review of the geochemistry of serpentinites, based on the compilation of ~ 900 geochemical data of abyssal, mantle wedge and exhumed serpentinites after subduction. The aim was to better understand the geochemical evolution of these rocks during their subduction as well as their impact in the global geochemical cycle. When studying serpentinites, it is essential to determine their protoliths and their geological history before serpentinization. The geochemical data of serpentinites shows little mobility of compatible and rare earth elements (REE) at the scale of hand-specimen during their serpentinization. Thus, REE abundance can be used to identify the protolith for serpentinites, as well as magmatic processes such as melt/rock interactions before serpentinization. In the case of subducted serpentinites, the interpretation of trace element data is difficult due to the enrichments of light REE, independent of the nature of the protolith. We propose that enrichments are probably not related to serpentinization itself, but mostly due to (sedimentary-derived) fluid/rock interactions within the subduction channel after the serpentinization. It is also possible that the enrichment reflects the geochemical signature of the mantle protolith itself which could derive from the less refractory continental lithosphere exhumed at the ocean-continent transition. Additionally, during the last ten years, numerous analyses have been carried out, notably using in situ approaches, to better constrain the behavior of fluid-mobile elements (FME; e.g. B, Li, Cl, As, Sb, U, Th, Sr) incorporated in serpentine phases. The abundance of these elements provides information related to the fluid/rock interactions during serpentinization and the behavior of FME, from their incorporation to their gradual release during subduction. Serpentinites are considered as a reservoir of the FME in subduction zones and their role, notably on arc magma composition, is underestimated presently in the global geochemical cycle.
ISSN: 0024-4937

hal-00903601
https://hal.archives-ouvertes.fr/hal-00903601
DOI : 10.1016/j.lithos.2013.05.019

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
: Human exposure to xenobiotics is usually estimated by indirect methods. Biological monitoring has emerged during the last decade to improve assessment of exposure. However, biomonitoring is still an analytical challenge, because the amounts of sample available are often very small yet analysis must be as thorough and sensitive as possible. The purpose of this work was to develop an untargeted "exposomics" approach by using ultra-high-performance liquid chromatography coupled to high-resolution mass spectrometry (UHPLC-HRMS), which was applied to the characterization of pesticide metabolites in urine from pregnant women from a French epidemiological cohort. An upgradable list of pesticides commonly used on different crops, with their metabolites (more than 400 substances) was produced. Raw MS data were then processed to extract signals from these substances. Metabolites were identified by tandem mass spectrometry; putative identifications were validated by comparison with standards and metabolites generated by experiments on animals. Finally, signals of identified compounds were statistically analyzed by use of multivariate methods. This enabled discrimination of exposure groups, defined by indirect methods, on the basis of four metabolites from two fungicides (azoxystrobin, fenpropimorph) used in cereal production. This original approach applied to pesticide exposure can be extended to a variety of contaminant families for upstream evaluation of exposure from food and the environment.
ISSN: 1618-2642

hal-00875889
https://hal.archives-ouvertes.fr/hal-00875889
DOI : 10.1007/s00216-013-7136-2
PUBMED : 23892877