Éditeur(s) : Université des Antilles. Service commun de la documentation University of West Indies, Trinidad &Tobago
Extrait de : 52e congrès annuel de la Société caribéenne des plantes alimentaires / 52nd annual meeting of the Caribbean food crops society (CFCS), du 10 au 16 juillet 2016. INRA, CFCS
Description : Crop nutrient management is a critical component of productivity and quality. Commercial horticulture has relied almost exclusively on inorganic nutrient sources to satisfy plant nutritional requirements. Compost tea represents a sustainable alternative technology but its use has not been extensively researched. A factorial experiment was conducted subjecting lettuce plants to four increasing concentrations of compost tea; 0, 5, 10 and 20 % (m/v) applied at either 100 or 200 cm3 plant-1 day-1, for 30 days. At the end of the trial, measurements were made of leaf area (LA), yield, shoot and root dry mass (DM), root to shoot ratio, and nitrogen (N) and phosphorus (P) contents of shoots and roots. Compost tea concentration significantly (P < 0.05) affected all growth indices showing a similar pattern. Increasing concentration up to 10 % (m/v), positively improved growth and yield above the control. Increasing further to 20 % (m/v) reduced LA, yield and dry mass. For these variables, applying compost tea at 200 cm3 plant-1 day-1 resulted in a better response. Increasing concentration of compost tea showed a directly proportional relationship to shoot and root N content. However, the effect was non-significant for P. Yield and shoot DM were affected by the combination of compost tea concentration and application rate. Similar patterns of increasing yield were seen for increasing concentration within both rates however, the differences were significant for all concentrations at the higher application rate. Application of 200 cm3, 5 % compost tea resulted in the greatest yield, shoot and root DM. In addition to root DM, root surface area was significantly correlated with yield and shoot DM. Compost tea used at appropriate concentrations improved root growth and lettuce productivity.
Siècle(s) traité(s) : 21
Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V16281
V16281

Éditeur(s) : Instituto de Ciencia y Tecnologia Agricolas, Instituto de Ciencia y Tecnologia Agricolas,
Résumé : Caption title.
"Nombre del agricultor: Justo Rufino Morales Chua."
"Area sembrado: 18 Manzanas."
(Funding) Electronic resources created as part of a prototype UF Institutional Repository and Faculty Papers project by the University of Florida.
Guatemala
Caribbean
Guatemala -- Jalapa (Dept.)
Guatemala -- Jalapa (Dept.)

ocm7137

Éditeur(s) : Université des Antilles. Service commun de la documentation University of West Indies, Barbados
Extrait de : 52e congrès annuel de la Société caribéenne des plantes alimentaires / 52nd annual meeting of the Caribbean food crops society (CFCS), du 10 au 16 juillet 2016. INRA, CFCS
Description : Mulch application of Sargassum seaweed (Sargassum spp.) to soil can help to reduce beach contamination in the Caribbean Region while providing beneficial horticultural effects. This study investigated the effects of fresh Sargassum mulch on soil properties and plant growth in a test crop of tomato (Solanum lycopersicum L. â? ? HA 3019â? TM). Fresh Sargassum material (washed and unwashed) was applied as mulches (0, 5 and 8cm thick) to small field plots one week after transplanting of 3-week-old seedlings. The mulch material was raked away from the plots after three weeks exposure. Observations on soil moisture, electrical conductivity, pH and biological activity, and plant growth were made at 1 to 2-week intervals over a 6-week period with additional soil measurements after 10 weeks. Soil biological activity (respiration) was increased by the Sargassum mulch with values being similar for the 5cm and 8cm mulch layers. Soil moisture content, pH and electrical conductivity (EC) were increased as the mulch layer increased and EC values were only marginally reduced by Sargassum washing. An increase in plant growth compared to the control treatment was noted only in the washed Sargassum treatments. Potential benefits of Sargassum seaweed mulches on soil properties and plant growth can be nullified due to soil salinization effects.
Siècle(s) traité(s) : 21
Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V16269
V16269

Éditeur(s) : University of West Indies, Barbados Université des Antilles. Service commun de la documentation
Extrait de : 52e congrès annuel de la Société caribéenne des plantes alimentaires / 52nd annual meeting of the Caribbean food crops society (CFCS), du 10 au 16 juillet 2016. INRA, CFCS
Description : A germination bioassay was developed to screen for potential phytotoxicity of soil amendment products from organic waste recycling. In phase 1 of the study, nine soil amendment products were applied as mulches on 3- to 5-week-old tomato seedlings (Solanum lycopersicum L.HA3019?) planted in 4L pots. Plant growth was reduced by the less mature mulch materials. Using lettuce (Lactuca sativa L.New Red Fire?) as the test species, a laboratory germination test was developed in phase 2 with aqueous extracts from a non-phytotoxic (safe) and a phytotoxic product identified in phase 1. Extracts were obtained by soaking 10g of air-dried product in 90 mL distilled water for 24h at 25°C. Diluted extracts (0, 25, 50, 75 and 100%) were applied to lettuce seeds sown on filter paper in petri-dishes and germination was monitored for 5 days, confirming the results from phase 1. In phase 3, the bioassay developed in phase 2 was used to test three previously untested local products and one imported product. Two of the local products were comparable to the imported product. Results obtained in phase 3 were confirmed using the mulch test as described in phase 1. Hence, the germination bioassay can be a useful tool for quality control in the production of(safe) soil amendment products from organic waste recycling.
Siècle(s) traité(s) : 21
Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V16302
V16302

Éditeur(s) : University of West Indies, Barbados Université des Antilles. Service commun de la documentation
Extrait de : 52e congrès annuel de la Société caribéenne des plantes alimentaires / 52nd annual meeting of the Caribbean food crops society (CFCS), du 10 au 16 juillet 2016. INRA, CFCS
Description : Practical uses for Sargassum are sought regionally as our coastlines continue to be flooded by sargassum blooms floating ashore. This study investigated the potential benefits of Sargassum (Sargassum spp.) mulch in sweet potato production at Golden Ridge, St. George, Barbados, during a drought period (November 2015-March 2016). Treatment consisted of combinations of two cultivars of sweet potato (?E? and ?CBS 32?, main-plots) and washed/unwashed Sargassum mulches (sub-plots) of different ages (approximately 4 weeks old and fresh, sub-sub-plots) with four replications. Sargassum mulch was applied to the furrows of plots (6m2) four weeks after planting at a rate of 10 t ha-1 and yield, growth and soil parameters were monitored at periodic intervals. Yield (t ha-1) was highest for the 4-weeks old Sargassum mulch treatment, and the number of marketable tubers was highest for the unwashed 4-weeks old Sargassum treatment. The number of tubers with Euscepes postfaciatus (Scarabee) pest damage was decreased by the Sargassum mulch treatments especially for the 4-weeks old unwashed Sargassum. Vine growth was taller for cultivar ?E? and for the washed Sargassum treatments. Chlorophyll indices were higher in ?CBS 32? than in cultivar ?E? and were lower in Sargassum treated plots. Moisture content in the top 10cm of soil was consistently low and greater in plots of cultivar ?E? than in those of ?CBS 32?. There appears to be some potential for the use of aged Sargassum mulches for improving growth, pest management and yields of sweet potato and further investigations are needed.
Siècle(s) traité(s) : 21
Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V16270
V16270

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : Publication Inra prise en compte dans l'analyse bibliométrique des publications scientifiques mondiales sur les Fruits, les Légumes et la Pomme de terre. Période 2000-2012. http://prodinra.inra.fr/record/256699
Background and Aims Plastic tree-shelters are increasingly used to protect tree seedlings against browsing animals and herbicide drifts. The biomass allocation in young seedlings of deciduous trees is highly disturbed by common plastic tree-shelters, resulting in poor root systems and reduced diameter growth of the trunk. The shelters have been improved by creating chimney-effect ventilation with holes drilled at the bottom, resulting in stimulated trunk diameter growth, but the root deficit has remained unchanged. An experiment was set up to elucidate the mechanisms behind the poor root growth of sheltered Prunus avium trees. Methods Tree seedlings were grown either in natural windy conditions or in tree-shelters. Mechanical wind stimuli were suppressed in ten unsheltered trees by staking. Mechanical stimuli (bending) of the stem were applied in ten sheltered trees using an original mechanical device. Key Results Sheltered trees suffered from poor root growth, but sheltered bent trees largely recovered, showing that mechano-sensing is an important mechanism governing C allocation and the shoot-root balance. The use of a few artificial mechanical stimuli increased the biomass allocation towards the roots, as did natural wind sway. It was demonstrated that there was an acclimation of plants to the imposed strain. Conclusions This study suggests that if mechanical stimuli are used to control plant growth, they should be applied at low frequency in order to be most effective. The impact on the functional equilibrium hypothesis that is used in many tree growth models is discussed. The consequence of the lack of mechanical stimuli should be incorporated in tree growth models when applied to environments protected from the wind (e.g. greenhouses, dense forests).
ISSN: 0305-7364

hal-01032056
https://hal.archives-ouvertes.fr/hal-01032056
DOI : 10.1093/aob/mcn054

Éditeur(s) : Inter-research
Résumé : Environmental conditions experienced by aquatic organisms are archived in biogenic carbonates such as fish otoliths, bivalve shells and coral skeletons. These calcified structures present an accretionary growth and variations in optical properties - color or opacity - that are used to reconstruct time. Full and reliable exploitation of the information extracted from these structures is, however, often limited as the metabolic processes that control their growth and their optical properties are poorly understood. Here, we propose a new modeling framework that couples both the growth of a biogenic carbonate and its optical properties with the metabolism of the organism. The model relies on well-tested properties of Dynamic Energy Budget (DEB) theory. It is applied to otoliths of the Bay of Biscay anchovy (Engraulis encrasicolus) for which a DEB model has been previously developed. The model reproduces well-known otolith patterns and thus provides us with mechanisms for the metabolic control of otolith size and opacity at the scale of an individual lifespan. Two original contributions using this framework are demonstrated. First, the model can be used to reconstruct the temporal variations in the food assimilated by an individual fish. Reconstructing food conditions of past and present aquatic species in their natural environment is key ecological information to better understand population dynamics. Second, we show that non-seasonal checks can be discriminated from seasonal checks, which is a well-recognized problem when interpreting fish otoliths. We discuss further developments of the model and the experimental settings required to test this new promising framework.
Marine Ecology-progress Series (0171-8630) (Inter-research), 2012 , Vol. 447 , P. 151-164

Droits : 2012 Inter-Research
http://archimer.ifremer.fr/doc/00060/17082/14593.pdf
DOI:10.3354/meps09492
http://archimer.ifremer.fr/doc/00060/17082/

Éditeur(s) : Centre Océanologique de Bretagne
Résumé : One of the criteria for selecting a shrimp of commercial interest in French Polynesia is the acceptability of artificial diet; such a criterion has been used to test Penaeus merguiensis.Experiments have been carried out in Centre Océanologique du Pacifique in Tahiti island where the water temperature range is 25-29°C, salinity 35 ppt, pH. 8.2, and photoperiod constant.Juveniles used in this study are hatched in CNEXO-COP at Vairao.It has been found that a 50-55% protein content diet gives a better growth performance. A carbohydrate such as starch appears more suitable than glucose or glucose plus starch in isonitrogenous purified diets.A vitamin mix rich in vitamin C, choline and inositol provides better results and a mineral mix with 3% magnesium reaches optimum. The major nutritional results for this species are applied to formulation of artificial diets.With the best diet, growth performances are normal: from 2.8 g to 9.0 g in 90 days, with about 60% survival rate at alow density, 20 animals/m² under strict control. But at another scale, in 400 m² graw-out tanks, growth was rather low even with an excellent Japanese diet containing 60% protein.Therefore, P. merguiensis does not appear to be a good candidate species for aquafarming in French Polynesia. [NOT CONTROLLED OCR]
Recueil des Travaux du Centre Océanologique de Bretagne (Centre Océanologique de Bretagne), 1979 , P. 705-714

Droits : Centre Océanologique de Bretagne
http://archimer.ifremer.fr/doc/1979/publication-5272.pdf
http://archimer.ifremer.fr/doc/00000/5272/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : L’organisation et la gestion des espaces publics en milieu urbain sont au centre des préoccupations de la puissance publique. Cet intérêt est lié dans les pays en développement aux nombreux dysfonctionnements recensés dans la ville. Ces difficultés sont entretenues par la démographie galopante, l’urbanisation informelle et à l’accroissement des activités industrielles, commerciales entre autres. À Dakar, la question de la mobilité urbaine est exacerbée par les puissants mouvements pendulaires entre la ville centrale et la périphérie amplifiés par les stationnements anarchiques et par l’inorganisation des modes de transports urbains.Le type d’espace public choisi pour cet article est une gare routière située au cœur du Plateau de Dakar : Petersen. Elle apparaît comme l’une des plus importantes gares routières du pays, surtout en matière de fréquentation avec plus de 50 000 personnes par jour. Le mode de gestion appliqué ici est la concession, une convention par laquelle la puissance publique confie la gestion de l’équipement à la SAGES une structure privée prenant en charge les intérêts parfois très contradictoires des différents acteurs.
The organization and management of public spaces in urban areas is a central concern of public authorities. This interest is linked in developing countries with numerous shortcomings identified in the city. These difficulties sustained by massive population growth, urbanization informal, and increased industrial activities, commercial and others. In Dakar, the question of urban mobility is exacerbated by the significant commuting between the city center and the periphery that are amplified by the chaotic parking lots and the disorganization of urban transport modes.The type of public space chosen for this article is a bus station in the heart of the Plateau de Dakar: Petersen. It appears as one of the largest bus stations in the country, especially in terms of attendance with over 50,000 people per day.The management method applied here is the concession, an agreement by which the public entrusts the management of equipment at the SAGES, a private organization that supports some very conflicting interests of different actors.
Sénégal
Dakar

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.7858
http://journals.openedition.org/etudescaribeennes/7858

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : En este trabajo se pretende hacer una aproximación a las posibilidades que tiene el espacio público de las ciudades costeras y de las islas como elemento de integración social. Para ello veremos que el diseño de estos espacios desde el punto de vista de la diversidad humana es muy importante, ya que si a la hora de diseñar tenemos en cuenta todas las posibilidades, podremos generar espacios que ayuden a las personas a sociabilizarse. En las zonas costeras contamos con cuestiones específicas y en el caso concreto de las islas y playas en el que existe espacio limitado, es importante definir este rol del espacio público.La humanización del espacio público va de la mano de la accesibilidad, es por este motivo que aplicar criterios de Diseño para Todos y Accesibilidad Universal en el diseño del espacio público nos permite la democratización del mismo, de tal modo que puede ser disfrutado por todos los ciudadanos en igualdad de condiciones. En las islas y las zonas costeras, la exclusión social de grupos poblacionales por falta de accesibilidad puede resultar preocupante ya que la limitación física del espacio reduce mucho las posibilidades de crecimiento de las personas.
Cette étude propose une approche sur les possibilités de faire de l’espace public des villes côtières et des îles un élément d’intégration sociale. Pour cela il est important que la conceptualisation de ces espaces intègre les dimensions de la diversité humaine. Si lors de la conception toutes les possibilités sont prises en compte, il est possible de construire des espaces qui participent à la sociabilisation des personnes. Dans les zones côtières se posent des questions spécifiques et concrètes autour de l’accessibilité aux plages et aux îles dans lesquelles l’espace est limité. Il est important de définir le rôle de l’espace public.L’humanisation de l’espace public va de pair avec la question de l’accessibilité, d’où l’importance d’intégrer les dimensions de l’accessibilité pour tous dans l’aménagement de ces espaces. C’est une question de démocratie, tous les citoyens doivent pouvoir en profiter quelle que soit leur condition. Dans les espaces côtiers, l’exclusion sociale de certaines catégories de populations en raison du manque d’accessibilité est d’autant plus préoccupante que le milieu physique est plus contraignant.
This paper intends to approximate the possibilities that the public space of coastal cities and islands have as an element of social integration. For this we will see that the design of these spaces from the point of view of diversity is very important, since when designing we take into account all the possibilities of generating spaces that help people to become socialized. In coastal areas we have specific things and in the specific case of islands and beaches where there is limited space, it is important to define this role of public space.The humanization of public space goes hand in hand with accessibility, it is for this reason that it applies criteria of Design for All and Universal Accessibility in the design of the public space allows us the democratization of it, in such a way that can be enjoyed by all Citizens in equal conditions In the islands and coastal areas, social exclusion of population groups due to lack of accessibility can be of concern and that physical limitation of space reduces the chances of growth of people.

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.10752
http://journals.openedition.org/etudescaribeennes/10752

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Experimentally Assisted Molecular Modelling (EAMM) is an original approach for predicting the structure of organic micro-crystals and deducing their habit in the presence of various solvents and additives. It is applied here in the case of n-octylamino-nitrobenzoxadiazole (nOA-NBD), a fluorescent compound. This general approach is first of all described and validated by its blind application to three known and closely-related crystals. Then, the whole process is applied to predict the molecular crystal generated by n-octylamino-NBD, including the molecule conformation, its structure (cell parameters, molecular packing, X-ray powder diagrams) and its theoretical plus actual habits in the presence of a solvent (p-xylene) and two additives (acetic acid and n-dodecane). The conformation of the predicted molecule is validated by comparison with two similar molecules embedded in observable crystals. Then, the choice between two proposed structures (with the same energy and two equiprobable packings) is based on the comparison between experimental and re-computed X-ray powder diffraction diagrams, and also on the interpretation of an actual TEM image in the light of the proposed cell parameters. This choice is confirmed by the comparison between the vapour-grown face development (proposed by the BFDH or the attachment energy models) and the actual face development in a pure solvent. Finally, the actual habit deduced from comparing the crystal attachment energy with the adsorption energy of solvent or additive molecules is validated by SEM images of NBD micro-crystals in presence of the solvent alone or in presence of both additives. In conclusion, the EAMM approach appears to be a decisive tool for quickly simulating structural and habit properties of the molecular crystals, accessible or not by experimentation. Thus, a numerical selection of molecules becomes possible in view of deriving organic materials with predetermined properties, such as the fluorescence properties of the compound considered in the present study.
ISSN: 0022-0248

hal-00857894
https://hal.archives-ouvertes.fr/hal-00857894
DOI : 10.1016/j.jcrysgro.2011.07.035

Éditeur(s) : HAL CCSD
Résumé : International audience
The search for safe antimalarial compounds acting against asexual symptom-responsible stages and sexual transmission-responsible forms of Plasmodium species is one of the major challenges in malaria elimination programs. So far, among current drugs approved for human use, only primaquine has transmission-blocking activity. The discovery of small molecules targeting different Plasmodium falcip-arum life stages remains a priority in antimalarial drug research. In this context, several independent studies have recently reported antiplasmodial and transmission-blocking activities of commonly used stains, dyes and fluorescent probes against P. falciparum including chloroquine-resistant isolates. Herein we have studied the antimalarial activities of dyes with different scaffold and we report that the triar-ylmethane dye (TRAM) Brilliant green inhibits the growth of asexual stages (IC 50 2 mM) and has exflagellation-blocking activity (IC 50 800 nM) against P. falciparum reference strains (3D7, 7G8) and chloroquine-resistant clinical isolate (Q206). In a second step we have investigated the antiplasmodial activities of two polysulfonated triarylmethane food dyes. Green S (E142) is weakly active against P. falciparum asexual stage (IC 50 x 17 mM) whereas Patent Blue V (E131) is inactive in both antimalarial assays. By applying liquid chromatography techniques for the culture supernatant analysis after cell washings and lysis, we report the detection of Brilliant green in erythrocytes, the selective uptake of Green S (E142) by infected erythrocytes, whereas Patent Blue V (E131) could not be detected within non-infected and 3D7-infected erythrocytes. Overall, our results suggest that two polysulfonated food dyes might display different affinity with transporters or channels on infected RBC membrane.
International journal for parasitology. Drugs and drug resistance

Droits : http://creativecommons.org/licenses/by-nc-sa/
pasteur-01614675
https://hal-pasteur.archives-ouvertes.fr/pasteur-01614675
https://hal-pasteur.archives-ouvertes.fr/pasteur-01614675/document
https://hal-pasteur.archives-ouvertes.fr/pasteur-01614675/file/Leba%20LJ-article%20colorant-version%20publiee.pdf
DOI : 10.1016/j.ijpddr.2017.07.002

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In southeastern Taiwan a slice of forearc basement belonging to the Philippine Sea Plate upper-plate is suspected to subduct under the Luzon arc as a consequence of the transition from oceanic to incipient continental subduction. Effects on the morphology, deformation, geometry of structures and tectonic evolution of the orogenic wedge in the collision area are numerous. This study examines the impact of foreare lithosphere subduction on forearc basin and accretionary wedge deformation. A morpho-structural analysis of the geological features observed onland and offshore allows describing in detail the complex deformation suffered by the area. A combined approach by analogue modeling is applied to better understand the phenomenon. Comparison between nature and experimental results shows that subduction of a forearc basement slice induces intense shortening and concomitant deformation in the foreare domain. Such process involves deformation of the foreare basin previously developed in a setting of oceanic subduction. Sediments of the forearc basin are involved in the growth of a new thrust ridge backthrusted against the basement slope of the volcanic arc edifice. Sediments coming from the growing orogenic wedge are trapped in the trough developed between its backpart and the topographic high of the new rising ridge. A syn-collisional orogenic basin develops which structural evolution characterizes the progressive shortening of the forearc domain. Most of the deformation and tectonic events recorded offshore or onland in the complex area south of Taiwan can be explained using results of our specific modeling which well describe the tectonic processes associated with continental subduction under a volcanic are.
ISSN: 0040-1951

hal-00420080
https://hal.archives-ouvertes.fr/hal-00420080
DOI : 10.1016/j.tecto.2007.11.016

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Crystal growth driven by a flowing solution is modeled for a flow with low Reynolds number using a computational dynamic software. Considering equivalent crystallographic faces, the chemical flux is calculated along upstream and downstream faces. Upstream flux is higher compared to downstream and leads to a symmetry breakdown of the crystal shape and develops mirror symmetry parallel to the flow velocity. Moreover the ratio of these two fluxes (upstream / downstream) gives a quantitative relation between the relative crystal growth rate and the flow velocity. Thus, using an inverse method, the flow direction and velocity can be deduced by the study of the variation of the growth band thicknesses of equivalent crystallographic faces. This new method was applied to the formation of metasomatic tourmalinite associated with a leucogranite sill. The approach is complemented by a study of the chemistry of the tourmaline. In the studied case, the application of the new method gives the high fluid velocities in pores (10-3 - 10-4 m/s) during metasomatism. Equivalent Darcy velocities are estimated and discussed accounting for the major role played by the regional deformation. Finally, a two-stage tectono-hydrodynamic model is proposed for the metsomatism. The first stage is genetically linked to the sill injection, and the second is characterized by a wider event with hydrothermal flow passing along the leucogranite sills.
ISSN: 0012-821X

Droits : info:eu-repo/semantics/OpenAccess
insu-00352307
https://hal-insu.archives-ouvertes.fr/insu-00352307
https://hal-insu.archives-ouvertes.fr/insu-00352307/document
https://hal-insu.archives-ouvertes.fr/insu-00352307/file/Sizaret_et_al_final.pdf
DOI : 10.1016/j.epsl.2009.01.013

Résumé : En 2013, Le Groupe d'experts Intergouvernemental sur l'Evolution du Climat (GIEC) publie son cinquième rapport concernant les changements climatiques. Il y est souligné que le réchauffement climatique est sans équivoque, et que de nouvelles émissions de gaz à effet de serre impliqueront une poursuite du réchauffement et des changements affectant toutes les composantes du système climatique. En région tropicale, une hausse de la température, ainsi qu'une intensification des événements de sécheresse et de pluviométrie extrêmes sont à prévoir. C'est dans ce contexte que s'inscrit ce travail, dont le but est d'étudier la réponse de la forêt tropicale à ces changements climatiques prédits en Guyane Française. Pour ce faire, j'ai utilisé les données du dispositif de suivi forestier de Paracou pour construire un modèle de dynamique individuel basé sur les traits fonctionnels des arbres. Un modèle de mortalité a d'abord été réalisé puis couplé à un modèle de croissance.Le modèle couplé ainsi construit permet de modéliser la croissance et la mortalité des arbres sur un pas de temps de 2 ans tout en tenant compte de leur ontogénie et de leurs traits fonctionnels. Ce modèle a d'abord été appliqué aux essences commerciales de Guyane Française en forêt naturelle et exploitée en y ajoutant un indice de stress hydrique. Ceci permet de montrer que le stress hydrique fait baisser la croissance et augmenter la mortalité, tandis que l'exploitation a l'effet inverse. Malgré le signal commun, différentes réponses sont observées selon les espèces. Le modèle a ensuite été appliqué à la communauté en forêt naturelle pour identifier les drivers climatiques et les processus impactés. Il ressort que la croissance est impactée par le stress hydrique et la température, et que la mortalité est impactée par le stress hydrique et la pluviométrie totale.Ces résultats ont enfin permis de construire un modèle complet de dynamique forestière climat dépendant, et de simuler l'évolution d'une communauté pendant un siècle selon différents scénarios correspondant aux prédictions du GIEC. Les simulations mettent en évidence une très forte diminution de la croissance, ainsi qu'une plus faible diminution de la mortalité. Ceci entraine une diminution notable de la surface terrière, du diamètre quadratique et de la biomasse fraiche. Une analyse de sensibilité montre que ces changements sont principalement dus à l'augmentation sévère des températures prédites pour le siècle à venir. Des pistes de réflexion sur les enjeux de modélisation et les échelles considérées sont proposées en discussion de ce travail.
In 2013 the intergovernmental panel on climate change (ipcc) publishes its fifth report. This report underlines that an increase of temperature and a strengthening of drought and extreme rainfall are expected in tropical regions. This work was made in this context of climate changes, and aimed to study the response of the rainforest to predicted climate changes. To do this, i used the data from the study site of Paracou French Guiana to build an individual based dynamics model based on the functional traits of trees. This model was first applied to species with a commercial interest in French Guiana, in natural and logged forest and adding a water stress index as predictor. Water stress decreases growth and increases mortality, while logging had the opposite effect. The model was then applied to the community in natural forest for identifying potential climate drivers and impacted processes. Growth is impacted by the water stress and temperature and mortality is imp acted by the water stress and the total rainfall. These results allowed us to build a climate dependent model of forest dynamics and to run simulations of the evolution of a community under different scenarios for the next century. Simulations showed a decrease of growth and a small decrease of mortality. This resulted in a substantial decrease of basal area, squared diameter and fresh biomass.

http://www.theses.fr/2014AGUY0802/document

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Background and Aims: In rain forests, sapling survival is highly dependent on the regulation of trunk slenderness (height/diameter ratio): shade-intolerant species have to grow in height as fast as possible to reach the canopy but also have to withstand mechanical loadings (wind and their own weight) to avoid buckling. Recent studies suggest that mechanosensing is essential to control tree dimensions and stability-related morphogenesis. Differences in species slenderness have been observed among rainforest trees; the present study thus investigates whether species with different slenderness and growth habits exhibit differences in mechanosensitivity. Methods: Recent studies have led to a model of mechanosensing (sum-of-strains model) that predicts a quantitative relationship between the applied sum of longitudinal strains and the plant's responses in the case of a single bending. Saplings of five different neotropical species (Eperua falcata, E. grandiflora, Tachigali melinonii, Symphonia globulifera and Bauhinia guianensis) were subjected to a regimen of controlled mechanical loading phases (bending) alternating with still phases over a period of 2 months. Mechanical loading was controlled in terms of strains and the five species were subjected to the same range of sum of strains. The application of the sum-of-strain model led to a dose-response curve for each species. Dose-response curves were then compared between tested species. Key Results: The model of mechanosensing (sum-of-strain model) applied in the case of multiple bending as long as the bending frequency was low. A comparison of dose-response curves for each species demonstrated differences in the stimulus threshold, suggesting two groups of responses among the species. Interestingly, the liana species B. guianensis exhibited a higher threshold than other Leguminosae species tested. Conclusions: This study provides a conceptual framework to study variability in plant mechanosensing and demonstrated interspecific variability in mechanosensing.
ISSN: 0305-7364

halsde-00454145
https://hal.archives-ouvertes.fr/halsde-00454145
DOI : 10.1093/aob/mcp286

Résumé : The caledonian blue shrimp Litopenaeus stylirostris is the second largest export commodity in New Caledonia. This industry is based on 19 production farms but also four hatcheries, two feed production units and two packing plants. The maximum production was reached in 2005 with 2400 tons. Supply of juveniles by hatchery is the bottle neck of the production chain because this species is not present in the natural environment. Recent problems of larval survival led some scientists to work on eco-physiology to propose adaptations of larval rearing protocol. Salinity of the rearing environment is taken as an example to study the influence of abiotic parameters on the animal physiology according to its development stage. The influence of salinity on survival and growth was evaluated at different development stages in Litopenaeus stylirostris. The study showed that ocean salinity (33-35 ppt) should be maintained during the larval stage, but after the post-larval metamorphosis, better growth could be achieved by lowering the salinity gradually to 27 ppt. This measure is now applied routinely in the Saint Vincent's hatchery and is the result of research in eco-physiology showing that the blue shrimp iso-osmotic point is around 27 ppt.
La crevette bleue calédonienne Litopenaeus stylirostris est au deuxième rang des produits exportés en Nouvelle-Calédonie. L’industrie crevetticole calédonienne est basée sur 19 fermes de production mais également 4 écloseries, 2 provendiers et 2 usines de conditionnement. La production maximale a été atteinte en 2005 avec 2400 tonnes. La fourniture de juvéniles par les écloseries est le point crucial de la chaîne de production car cette espèce n’est pas présente dans le milieu naturel. Les récents problèmes de survie larvaire ont orienté une partie de la recherche vers l’éco-physiologie en vue de proposer des adaptations du protocole d’élevage. La salinité du milieu d’élevage est prise comme exemple pour étudier l’influence d’un paramètre abiotique sur la physiologie de l’animal en fonction de son stade de développement. L’influence de la salinité sur la survie et la croissance a été évaluée aux différents stades de développement chez Litopenaeus stylirostris. L'étude a permis de montrer que la salinité océanique (33-35 ppt) devait être maintenue durant la phase larvaire mais qu'après la métamorphose en post-larve, une meilleure croissance pouvait être obtenue en abaissant la salinité progressivement à 27 ppt. Cette mesure est maintenant appliquée en routine en élevage larvaire à l'écloserie de Saint-Vincent et découle des recherches menées en éco-physiologie qui situe le point iso-osmotique de la crevette bleue autour de 27 ppt.

Droits : 2011 Ifremer
http://archimer.ifremer.fr/doc/00115/22658/20603.pdf
http://archimer.ifremer.fr/doc/00115/22658/

Éditeur(s) : HAL CCSD
Résumé : The presence of biological matter (biofilms) in deep geological sites for storage of, for instance, toxic elements or groundwater in aquifers was clearly proved. That biomass triggers physical and chemical processes which greatly modify the durability and the sustainability of the sites. These processes, mainly from oxidative/reductive reactions, are poorly understood. This is mainly due to the fact that former studies were done at the macroscopic level far away from the micrometric scale where relevant processes induced by bacteria take place. Investigations at microscopic level are needed. Thus, we developed an experimental set-up based on the combined use of optical microscopy (transmission), atomic force microscopy (AFM) and electrical and electro-chemical AFM microscopy (EC_AFM) in order to get simultaneous information on topographic and electro-chemical processes. The first highly sensitive step was to use AFM with biological samples in liquid environment: wepresent here a study about AFM imaging of living, moving or self-immobilized bacteria, in their genuine physiological liquid medium and in true in vivo conditions. No external immobilization protocol, neither chemical nor mechanical was needed. For the first time, the native gliding movements of Gram negative Nostoc cyanobacteria upon the surface were studied by AFM. AFM height and mechanical stiffness data were simultaneously acquired. From these, mechanical parameters, inner turgor pressure and Young modulus, were derived for different bacterial species (Anabaenopsis circularis, Rhodococcus wratislaviensis). Our study revealed that AFM imaging is thus possible on moving living species. These results open a large window on new studies of both dynamical phenomena of practical and fundamental interests such as the formation of biofilms and dynamic properties of bacteria in real physiological conditions. The second delicate step was to combine AFM and optical measurements with electrical ones. We mounted a new experimental set-up coupling real-time (i) monitoring of optical properties as the optical density (OD) evolution related to bulk bacterial growth in liquid or as the counting of number of bacteria adhering on the surface of the sample as well and (ii) electrical and electrochemical measurements. Furthermore, these results will shortly be applied to the optimized monitoring of the in-situ activity of bacteria consuming oil pollutants, following this way, in real-time, the bioremediation of an oilcontaminated soil (ANR ECOTECH_BIOPHY program).
La présence de matière biologique (biofilms) dans les sites de stockage géologique profond, d'éléments toxiques ou encore de l'eau potable des aquifères est maintenant clairement démontrée. Cette biomasse est à l'origine de processus physiques et chimiques qui modifient considérablement la durabilité et la pérennité des sites concernés. Ces processus, principalement de type oxydo-réductif, sont encore mal compris. Ceci est principalement dû aux méthodes d'investigation, principalement macroscopiques, loin de l'échelle micrométrique caractéristique des bactéries. Seules des études, basées sur des méthodes d'investigation locale, peuvent apporter les informations requises. Ainsi, nous avons développé un dispositif expérimental basé sur l'utilisation combinée de la microscopie optique (en transmission), la microscopie à force atomique (AFM) et la microscopie AFM en mode électrique et électrochimique (EC_AFM) afin d'obtenir des informations simultanées sur la topographie de l'échantillon et sur les processus électrochimiques à l'échelle des bactéries. La première étape sensible consistait à utiliser l'AFM sur des échantillons biologiques en milieu liquide: nous présentons ici les résultats de l'imagerie AFM en milieu liquide de plusieurs types de bactéries dans leurs conditions physiologiques naturelles (conditions in vivo). Aucun protocole d'immobilisation, ni chimique ni mécanique, n'a été nécessaire; et pour la première fois, les mouvements de reptation de cyanobactéries Nostoc ont été étudiés par l'AFM. Les études AFM ont permis d'acquérir des données topographiques mais aussi mécaniques : nous avons pu ainsi mesurer le module d'Young, la pression de turgescence de différentes souches bactériennes (Anabaenopsis circularis, Rhodococcus wratislaviensis). Cette étude complète, a révélé que l'imagerie AFM est donc possible sur des espèces vivantes en mouvement. Ces résultats ouvrent une grande fenêtre sur de nouvelles études d'intérêts tels que la formation de biofilms et les propriétés dynamiques de bactéries dans des conditions physiologiques réelles. La deuxième étape délicate était de combiner l'AFM aux mesures optiques et électriques. Nous avons développé un nouveau dispositif expérimental permettant (i) le suivi de l'évolution de la croissance bactérienne par la mesure des propriétés optiques comme la densité optique DO (pour le développement bactérien en volume - milieu planctonique) , ou l'analyse de l'image du substrat par comptage du nombre de bactéries sur la surface de l'échantillon (biofilm), et (ii) les mesures électriques et électrochimiques. L'ensemble de ces résultats sera prochainement appliqué au développement de nouveaux outils de surveillance d'une biodépollution de terrain contaminé par les hydrocarbures, par le suivi in situ et en temps réel de l'activité de bactéries dépolluantes (ECOTECH_BIOPHY ANR).
https://tel.archives-ouvertes.fr/tel-01044714

tel-01044714
https://tel.archives-ouvertes.fr/tel-01044714
https://tel.archives-ouvertes.fr/tel-01044714/document
https://tel.archives-ouvertes.fr/tel-01044714/file/theseDhahri2013.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Orogenic wedges locally present chaotic tectonostratigraphic units that contain exotic blocks of various size, origin, age and lithology, embedded in a sedimentary matrix. The occurrence of ophiolitic blocks, sometimes huge, in such “mélanges” raises questions on (i) the mechanisms responsible for the incorporation of oceanic basement rocks into an accretionary wedge and (ii) the mechanisms allowing exhumation and redeposition of these exotic elements in “mélanges” during wedge growth.To address these questions, we present the results of a series of analogue experiments performed to characterize the processes and parameters responsible for accretion, exhumation and tectonosedimentary reworking of oceanic basement lithospheric fragments in an accretionary wedge.The experimental setup is designed to simulate the interaction between tectonics, erosion and sedimentation. Different configurations are applied to study the impact of various parameters, such as irregular oceanic floor due to structural inheritance, or the presence of layers with contrasted rheology that can affect deformation partitioning in the wedge (frontal accretion vs basal accretion) influencing its growth. Image correlation technique allows extracting instantaneous velocity field, and tracking of passive particles. By retrieving the particle paths determined from models, the pressure-temperature path of mélange units or elementary blocks can be discussed. The experimental results are then compared with observations from ophiolite-bearing mélanges in Taiwan (Lichi and Kenting mélanges) and Raman spectroscopy of carbonaceous material (RSCM) Thermometry data on rocks from the northern Apennines (Casanova mélange). A geological scenario is proposed following basic observations. The tectonic evolution of the retroside of doubly vergent accretionary wedges is mainly controlled by backthrusting and backfolding. The retro wedge is characterized by steep slopes that are prone to gravitational instabilities. It triggers submarine landslides inducing huge mass transfers. This erosion combined with backthrusting could favour exhumation of the ophiolitic fragments formerly accreted at the base of the wedge along the rough seafloor-sediments interface. Such an exhumed material can be reworked and deposited as debris- flows in proximal basins located at the foot of the retrowedge slope forming a tectono-sedimentary mélange. These syntectonic basins are continuously deformed and involved in prograding backthrusting-induced deformation.
ISSN: 0264-3707

hal-01395127
https://hal.archives-ouvertes.fr/hal-01395127
DOI : 10.1016/j.jog.2016.05.008

Éditeur(s) : HAL CCSD Elsevier
Résumé : Over-exploitation and fragmentation are serious problems for tropical forests. Most sustainable forest management practices avoid clear-cuts and apply selective logging systems focused on a few commercial species. We applied a simulation model to estimate the impact of such selective logging scenarios on the genetic diversity and demography of four tropical tree species from French Guiana. The simulations used data on genetic and demographic composition, growth, phenology and pollen and seed dispersal obtained for Dicorynia guianensis, Sextonia rubra, Symphonia globulifera and Vouacapoua americana at the experimental site in Paracou. Whereas Symphonia globulifera serves as a model for a species with low logging pressure, the other three species represent the most exploited tree species in French Guiana. In simulations with moderate logging, typical for French Guiana, with large cutting diameter (>60 cm diameter) and long cutting cycles (65 years), the two species V. americana and Sextonia rubra were not able to recover their initial stock at the end of the rotation period, with a large decrease in the number of individuals and in basal area. Under a more intensive logging system (cutting diameter >45 cm diameter, cutting cycles of 30 years) that is common practice in the Brazilian Amazon, only Symphonia globulifera showed no negative impact. Generally, the differences between the genetic parameters in the control scenarios without logging and the logging scenarios were surprisingly small. The main reasons for this were the overlapping of generations and the effective dispersal ability of gene vectors in all species, which guarantee relative homogeneity of the genetic structure in different age classes. Nevertheless, decreasing the population size by logging reduced the number of genotypes and caused higher genetic distances between the original population and the population at the end of the logging cycles. Sensitivity analysis showed that genetic changes in the logging scenarios were principally determined by the growth, densities and cutting diameter of each species, and only to a very small extent by the reproductive system including factors such as pollen and seed dispersal and flowering phenology
ISSN: 0006-3207

hal-01032050
https://hal.archives-ouvertes.fr/hal-01032050
DOI : 10.1016/j.biocon.2006.02.014