Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
1] Recent statistical analysis by Lallemand et al. (2008) of subduction zone parameters revealed that the back-arc deformation mode depends on the combination between the subducting (nu(sub)) and upper (nu(up)) plate velocities. No significant strain is recorded in the arc area if plate kinematics verifies nu(up) = 0.5 vsub - 2.3 (cm/a) in the HS3 reference frame. Arc spreading ( shortening) occurs if nu(up) is greater ( lower) than the preceding relationship. We test this statistical law with numerical models of subduction, by applying constant plate velocities far away from the subduction zone. The subducting lithosphere is free to deform at all depths. We quantify the force applied on the two converging plates to sustain constant surface velocities. The simulated rheology combined viscous (non-Newtonian) and brittle behaviors, and depends on water content. The influence of subduction rate vs is first studied for a fixed upper plate. After 950 km of convergence ( steady state slab pull), the transition from extensional to compressive stresses in the upper plate occurs for vs similar to 1.4 cm/a. The effect of upper plate velocity is then tested at constant subduction rate. Upper plate retreat ( advance) with respect to the trench increases extension ( compression) in the arc lithosphere and increases ( decreases) the subducting plate dip. Our modeling confirms the statistical kinematic relationship between vsub and nu(up) that describes the transition from extensional to compressive stresses in the arc lithosphere, even if the modeled law is shifted toward higher rates of upper plate retreat, using our set of physical parameters ( e. g., 100 km thick subducting oceanic plate) and short- term simulations. Our results make valid the choice of the HS3 reference frame for assessing plate velocity influence on arc tectonic regime. The subduction model suggests that friction along the interplate contact and the mantle Stokes reaction could be the two main forces competing against slab pull for upper mantle subductions. Besides, our simulations show that the arc deformation mode is strongly time dependent.
ISSN: 1525-2027

hal-00412328
https://hal.archives-ouvertes.fr/hal-00412328
https://hal.archives-ouvertes.fr/hal-00412328/document
https://hal.archives-ouvertes.fr/hal-00412328/file/arcayG32008.pdf
DOI : 10.1029/2007GC001875

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
The association of experimental data showing that the plastic deformation of olivine, the main constituent of the upper mantle, is highly anisotropic and the ubiquitous seismic anisotropy in the upper mantle, which indicates that olivine crystals show coherent orientations over scales of tens to hundreds of kilometers, implies that the long-term deformation in the upper mantle is anisotropic. We propose a multiscale approach, based on a combination of finite element and homogenization techniques, to model the deformation of a lithospheric plate while fully considering the mechanical anisotropy stemming from a strain-induced orientation of olivine crystals in the mantle. This multiscale model explicitly takes into account the evolution of crystal preferred orientations (CPO) of olivine and of the mechanical anisotropy during the deformation. We performed a series of numerical experiments simulating the uniaxial extension of a homogeneous (100% olivine) but anisotropic plate to test the role of the olivine CPO on the plate mechanical behavior and the link between CPO and mechanical anisotropy evolution. Even for this simple solicitation, different orientations and intensity of the initial olivine CPO result in variable plate strengths and deformation regimes. A plate with an initial CPO where the olivine [100] and [010] axes are concentrated at 45 degrees to the extension direction has high resolved shear stresses on the easy (010)[100] and (001)[100] slip systems of olivine. This results in low strength and in deformation by transtension. Plates with an initial CPO where the maximum of [100] axes is parallel or normal to the extension direction show a high initial strength. Isotropic plates have an intermediate behavior. The progressive rotation of olivine [100] axes toward the imposed stretching direction results in hardening in all models, except in those characterized by an initial concentration of olivine [100] axes normal to the imposed extension, in which softening is followed by hardening.
ISSN: 1525-2027

hal-00420063
https://hal.archives-ouvertes.fr/hal-00420063
DOI : 10.1029/2009GC002423

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
BACKGROUND: The insecticide chlordecone was extensively used in the French West Indies to control banana root borer. Its persistence in soils has led to the widespread pollution of the environment, and human beings are still exposed to this chemical. Chlordecone has been shown to impair neurological and behavioural functions in rodents when exposed gestationally or neonatally. OBJECTIVES: The aim of the study was to evaluate the impact of prenatal and postnatal exposure to chlordecone on the cognitive, visual, and motor development of 7-month-old infants from Guadeloupe. METHODS: Infants were tested at 7 months (n=153). Visual recognition memory and processing speed were assessed with the Fagan Tests of Infant Intelligence (FTII), visual acuity with the Teller Acuity Card, and fine motor development with the Brunet-Lezine. Samples of cord blood and breast milk at 3 months (n=88) were analyzed for chlordecone concentrations. Postnatal exposure was determined through breast feeding and frequency of contaminated food consumption by the infants. RESULTS: Cord chlordecone concentrations in tertiles were associated with reduced novelty preference on the FTII in the highly exposed group (β=-0.19, p=0.02). Postnatal exposure through contaminated food consumption was marginally related to reduced novelty preference (β=-0.14, p=0.07), and longer processing speed (β=0.16, p=0.07). Detectable levels of chlordecone in cord blood were associated with higher risk of obtaining low scores on the fine motor development scale (OR=1.25, p<0.01). CONCLUSION: These results suggest that pre- and postnatal low chronic exposure to chlordecone is associated with negative effects on cognitive and motor development during infancy.
ISSN: 0013-9351

hal-00875939
https://hal.archives-ouvertes.fr/hal-00875939
DOI : 10.1016/j.envres.2012.07.006
PUBMED : 22910562

Éditeur(s) : Natl Acad Sciences
Résumé : Most marine organisms disperse via ocean currents as larvae, so it is often assumed that larval-stage duration is the primary determinant of geographic range size. However, empirical tests of this relationship have yielded mixed results, and alternative hypotheses have rarely been considered. Here we assess the relative influence of adult and larval-traits on geographic range size using a global dataset encompassing 590 species of tropical reef fishes in 47 families, the largest compilation of such data to date for any marine group. We analyze this database using linear mixed-effect models to control for phylogeny and geographical limits on range size. Our analysis indicates that three adult traits likely to affect the capacity of new colonizers to survive and establish reproductive populations (body size, schooling behavior, and nocturnal activity) are equal or better predictors of geographic range size than pelagic larval duration. We conclude that adult life-history traits that affect the postdispersal persistence of new populations are primary determinants of successful range extension and, consequently, of geographic range size among tropical reef fishes.
Proceedings Of The National Academy Of Sciences Of The United States Of America (0027-8424) (Natl Acad Sciences), 2013-10 , Vol. 110 , N. 41 , P. 16498-16502

Droits : Freely available online through the PNAS open access option.
http://archimer.ifremer.fr/doc/00161/27240/25457.pdf
DOI:10.1073/pnas.1304074110
http://archimer.ifremer.fr/doc/00161/27240/

Éditeur(s) : HAL CCSD Ecological Society of America
Résumé : Herbivory is viewed as a major driver of plant evolution and the mostimportant energy pathway from plants to higher trophic levels. Therefore, understandingpatterns of herbivory on plants remains a key focus in evolution and ecology. Theevolutionary impacts of leaf herbivory include altering plant fitness, local adaptation, theevolution of defenses, and the diversification of plants as well as natural enemies. Leafherbivory also impacts ecological processes such as plant productivity, communitycomposition, and ecosystem nutrient cycling. Understanding the impact of herbivory onthese ecological and evolutionary processes requires species-specific, as opposed tocommunity-level, measures of herbivory. In addition, species-specific data enables the use ofmodern comparative methods to account for phylogenetic non-independence. Althoughhundreds of studies have measured natural rates of leaf consumption, we are unaware of anyaccessible compilation of these data. We created such a data set to provide the raw dataneeded to test general hypotheses relating to plant–herbivore interactions and to test theinfluence of biotic and abiotic factors on herbivory rates across large spatial scales. A largerepository will make this endeavor more efficient and robust. In total, we compiled 2641population-level measures for either annual or daily rates of leaf herbivory across 1145 speciesof vascular plants collected from 189 studies. All damage measures represent naturaloccurrences of herbivory that span numerous angiosperm, gymnosperm, and fern species. Toenable researchers to explore the causes of variation in herbivory and how these mightinteract, we added information about the study sites including: geolocation, climateclassification, habitat descriptions (e.g., seashore, grassland, forest, agricultural fields), andplant trait information concerning growth form and duration (e.g., annual vs. perennial). Wealso included extensive details of the methodology used to measure leaf damage, includingseasons and months of sampling, age of leaves, and the method used to estimate percentagearea missing. We anticipate that these data will make it possible to test important hypothesesin the plant–herbivore literature, including the plant apparency hypothesis, the latitudinalherbivorydefense hypothesis, the resource availability hypothesis, and the macroevolutionaryescalation of defense hypothesis.
ISSN: 0012-9658

hal-01601627
https://hal.archives-ouvertes.fr/hal-01601627
DOI : 10.1890/13-1741.1
PRODINRA : 397136
PUBMED : 24870043

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The NW-trending Talas-Ferghana Fault (TFF) in Kyrgyzstan, Central Asia, is one of the largest intracontinental strike-slip faults in the world. It extends over a distance of more than 2000 km from southern Tourghai to western Tarim and exhibits a maximum dextral offset of ∼200 km during the late Palaeozoic to present. The history of the fault provides important insights for the understanding of the evolution of southern Central Asia but remains poorly constrained due to lack of reliable geochronological data. We present new Ar-Ar ages and structural data from the Kyrgyz West Tianshan, that elucidate the kinematic history of the TFF in the Palaeozoic and Mesozoic. 40Ar/39Ar ages on mylonitic white micas document a deformational history consisting of several episodes. A late Carboniferous age of 312 ± 4 Ma point to initiation of top-to-the-south and dextral transpressional deformation during a metamorphic overprint in Precambrian and Palaeozoic rocks along the northern compartment of the TFF. The main phase of dextral motion along the entire fault occurred in the Permian as suggested by minimum ages of 260-290 Ma obtained at two different locations in the NW and central parts of the TFF. Partial isotopic resetting occurred between 240 and 210 Ma and younger ages of <200-210 Ma are ascribed to late brittle reactivation and hydrothermal fluid flow in the Late Triassic to Early Jurassic times. The Jurassic trans-tensional phase is featured by emplacement of 195 ± 3 Ma pegmatitic dykes. The Ar-Ar mineral ages and structural data argue for a major phase of dextral shearing, affecting the entire region from the West Tianshan to Mongolia in the late Permian and leading to formation of almost equally spaced major NW-trending dextral strike-slip faults. The uniform character of this deformation indicates that the process of amalgamation in this part of the CAOB ended prior to the late Permian, and Central Asia evolved as a single coherent continental block since that time.
ISSN: 0743-9547

hal-00831326
https://hal.archives-ouvertes.fr/hal-00831326
DOI : 10.1016/j.jseaes.2013.02.012

Éditeur(s) : Public Library Science
Résumé : Like hydrothermal vents along oceanic ridges, cold seeps are patchy and isolated ecosystems along continental margins, extending from bathyal to abyssal depths. The Atlantic Equatorial Belt (AEB), from the Gulf of Mexico to the Gulf of Guinea, was one focus of the Census of Marine Life ChEss (Chemosynthetic Ecosystems) program to study biogeography of seep and vent fauna. We present a review and analysis of collections from five seep regions along the AEB: the Gulf of Mexico where extensive faunal sampling has been conducted from 400 to 3300m, the Barbados accretionary prism, the Blake ridge diapir, and in the Eastern Atlantic from the Congo and Gabon margins and the recently explored Nigeria margin. Of the 72 taxa identified at the species level, a total of 9 species or species complexes are identified as amphi-Atlantic. Similarity analyses based on both Bray Curtis and Hellinger distances among 9 faunal collections, and principal component analysis based on presence/absence of megafauna species at these sites, suggest that within the AEB seep megafauna community structure is influenced primarily by depth rather than by geographic distance. Depth segregation is observed between 1000 and 2000m, with the middle slope sites either grouped with those deeper than 2000m or with the shallower sites. The highest level of community similarity was found between the seeps of the Florida escarpment and Congo margin. In the western Atlantic, the highest degree of similarity is observed between the shallowest sites of the Barbados prism and of the Louisiana slope. The high number of amphi-atlantic cold-seep species that do not cluster according to biogeographic regions, and the importance of depth in structuring AEB cold-seep communities are the major conclusions of this study. The hydrothermal vent sites along the Mid Atlantic Ridge (MAR) did not appear as "stepping stones" for dispersal of the AEB seep fauna, however, the south MAR and off axis regions should be further explored to more fully test this hypothesis.
Plos One (1932-6203) (Public Library Science), 2010-08 , Vol. 5 , N. 8 , P. 1-11

Droits : © 2010 Olu et al.
http://archimer.ifremer.fr/doc/00011/12207/8975.pdf
DOI:10.1371/journal.pone.0011967
http://archimer.ifremer.fr/doc/00011/12207/

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Giant earthquake (moment magnitude M-w >= 8.5) forecasts for subduction zones have been empirically related to both tectonic stresses and geometrical irregularities along the subduction interface. Both of these controls have been suggested as able to tune the ability of rupture to propagate laterally and, in turn, exert an important control on giant earthquake generation. Here we test these hypotheses, and their combined influence, by compiling a dataset of trench fill thickness (a proxy for smoothing of subducting plate relief by sediment input into the subduction channel) and upper plate strain (a proxy for the tectonic stresses applied to the subduction interface) for 44 segments of the global subduction network. We statistically compare relationships between upper plate strain, trench sediment thickness and maximal earthquake magnitude. We find that the combination of both large trench fill (>= 1 km) and neutral upper plate strain explains spatial patterns of giant earthquake occurrence to a statistically significant degree. In fact, the concert of these two factors is more highly correlated with giant earthquake occurrence than either factor on its own. Less frequent giant earthquakes of lower magnitude are also possible at subduction zones with thinner trench fill and compressive upper plate strain. Extensional upper plate strain and trench fill < 0.5 km appear to be unfavorable conditions, as giant earthquakes have not been observed in these geodynamical environments during the last 111 years. Citation: Heuret, A., C. P. Conrad, F. Funiciello, S. Lallemand, and L. Sandri (2012), Relation between subduction megathrust earthquakes, trench sediment thickness and upper plate strain, Geophys. Res. Lett., 39, L05304, doi: 10.1029/2011GL050712.
ISSN: 0094-8276

hal-00745636
https://hal.archives-ouvertes.fr/hal-00745636
https://hal.archives-ouvertes.fr/hal-00745636/document
https://hal.archives-ouvertes.fr/hal-00745636/file/heuretGRL2012.pdf
DOI : 10.1029/2011GL050712

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
Introduction. - Temocillin is an alternative to treat urinary tract infections with bacteria producing extended spectrum beta-lactamase (ESBL). The objective is to evaluate the use of temocillin in urinary tract infections. Materials and methods. - A systematic review of literature was carried out according to PRISMA criteria. All national and international recommendations have been reviewed regarding the indication of the use of temocillin in urology. Data collection on the use of temocillin in urinary tract infection has been performed from the Cochrane, LILACS and the Medline database. The following keywords were used: temocillin, extended spectrum. beta-lactamase, urinary tract infections, urine, prostate, epididymis, testis, diffusion, pharmacokinetics, pharmacodynamics. The selection was based on the methodology, language of publication (English/French), relevance to the topic and date of publication of the articles collected. The endpoint was to provide exhaustive scientific information allowing urologists to use this antibiotic in febrile urinary infections. Results. - Bacteria producing ESBL has a relatively high susceptible to temocillin, ranging from 61 % to 90 %. These rates would allow its use in probabilistic. The dosage recommended is currently, in the normo-renal patient, 4 g per day by intermittent infusion or continuously after a loading dose of 2g. Some studies argue, particularly in case of difficult clinical situations or obese patients, for administration of high doses (6 g/24 h) rather continuous infusion. There is no evident relationship between high doses and side effects. With an excellent urinary and prostatic diffusion, temocilllin might be recommend for the treatment of ESBL prostatitis. Conclusion. - Temocillin is known to have good urinary and prostatic diffusion. According to our results, this antibiotics is now a reliable alternative for the treatment of documented ESBL urinary tract infections. (C) 2017 Elsevier Masson SAS. All rights reserved.
ISSN: 1166-7087

hal-01659245
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01659245
DOI : 10.1016/j.purol.2017.07.242
PUBMED : 28869169

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The timing of E–W extension of the Tibetan plateau provides a test of mechanical models of the geodynamic evolution of the India–Asia convergence zone. In this work we focus on the Kung Co half graben (Southern Tibet, China), bounded by an active N–S normal fault with a minimum vertical offset of 1600 m. To estimate the onset of normal faulting we combined high and medium temperature (U–Pb, Ar/Ar) and low temperature ((U–Th)/He) thermochronometry of the Kung Co pluton, a two-mica granite of the northern Himalayan granitic belt that outcrop in the footwall of the fault. Biotite and muscovite Ar/Ar ages , are close from each other [not, vert, similar 16 Ma ± 0.2 (Ms) and not, vert, similar 15 ± 0.4 Ma (Bt)], which is typical of fast cooling. The zircon and apatite (U–Th)/He ages range from 11.3 to 9.6 Ma and 9.9 to 3.7 Ma respectively. These He ages are indicative of (1) fast initial cooling, from 11.3 to not, vert, similar 9 Ma, gradually decreasing with time and (2) a high geothermal gradient (not, vert, similar 400 °C/km), close to the surface at not, vert, similar 10 Ma. The Kung Co pluton was emplaced at about 22 Ma (U–Pb on zircon) at less than 10 km depth and 520–545 °C. Subsequent to its shallow emplacement, the pluton underwent fast thermal re-equilibration ending around 7.5 Ma, followed by a period of slow cooling caused either by the end of the thermal re-equilibration or by very slow exhumation (0.02–0.03 mm/yr) from not, vert, similar 7.5 Ma to at least 4 Ma. In either case the data suggest that the exhumation rate increased after 4 Ma. We infer this increase to be related to the initiation of the Kung Co normal fault. A critical examination of previously published data show that most not, vert, similar N–S Tibetan normal faults may have formed less than 5 Ma ago rather than in the Miocene as assumed by several authors. Such a young age implies that E–W extension is not related to the Neogene South Tibetan magmatism (25 to 8 Ma). Consequently, models relating E–W extension to magmatism, such as convective removal of the lower lithosphere, may be inappropriate. We rather think that this extension is related with local accommodation of boundary forces and displacements.
ISSN: 0012-821X

hal-00311791
https://hal.archives-ouvertes.fr/hal-00311791
DOI : 10.1016/j.epsl.2007.01.029

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Meiotic recombination predominantly occurs at discrete genomic loci called recombination hotspots, but the features defining these areas are still largely unknown (reviewed in refs 1-5). To allow a comprehensive analysis of hotspot-associated DNA and chromatin characteristics, we developed a direct molecular approach for mapping meiotic DNA double-strand breaks that initiate recombination. Here we present the genome-wide distribution of recombination initiation sites in the mouse genome. Hotspot centres are mapped with approximately 200-nucleotide precision, which allows analysis of the fine structural details of the preferred recombination sites. We determine that hotspots share a centrally distributed consensus motif, possess a nucleotide skew that changes polarity at the centres of hotspots and have an intrinsic preference to be occupied by a nucleosome. Furthermore, we find that the vast majority of recombination initiation sites in mouse males are associated with testis-specific trimethylation of lysine 4 on histone H3 that is distinct from histone H3 lysine 4 trimethylation marks associated with transcription. The recombination map presented here has been derived from a homogeneous mouse population with a defined genetic background and therefore lends itself to extensive future experimental exploration. We note that the mapping technique developed here does not depend on the availability of genetic markers and hence can be easily adapted to other species with complex genomes. Our findings uncover several fundamental features of mammalian recombination hotspots and underline the power of the new recombination map for future studies of genetic recombination, genome stability and evolution.
ISSN: 0028-0836

hal-00877681
https://hal.archives-ouvertes.fr/hal-00877681
DOI : 10.1038/nature09869
PUBMED : 21460839

Éditeur(s) : Actes de Colloque: Avancées et nouvellles technologies en toxinologie, éditeurs: Julien BARBIER, Evelyne BENOIT, Pascale MARCHOT, César MATTEI, Denis SERVENT
Résumé : Over the past seven years, methods available for the detection of phycotoxins have been extensively reviewed in a number of international expert committees, such as the consultations organised by FAO/IOC/WHO and EFSA, as well as by individual scientists. These reviews have shown that the methods available have severe limitations for the use in official control, either due to their limited scope and detection capability or due to a lack of calibration standards, reference materials and validation efforts. The present review focuses on recent developments in the detection of phycotoxins in several areas of applied research. Not being able to exhaustively describe all recent developments, the review focussed on three areas of interest to the authors: (i) detection of ultra-trace amounts of toxins, (ii) metabolism of toxins and their localisation in biological tissues, and (iii) approaches to detect unknown toxins or analogues of known toxins. Miniaturisation in combination with physico-chemical techniques appears to be a very efficient approach to detect low trace amounts of individual toxin analogues. In particular, the detection of azaspiracids and okadaic acid and analogues, using micro-filtration and on-line pre-concentration techniques, has shown to be useful for the characterisation of various algal and shellfish species. In the area of interactions of toxins with shellfish and mammalian systems, it is noted that several studies on biomarkers reveal either protein biomarkers of exposure to toxins or potential pathways of metabolism of the toxins themselves. A particular focus is given to recent findings in the areas of brevetoxin metabolism and biomarkers as well as azaspiracid localisation and metabolism. Finally, the detection of novel compounds is a particularly challenging area. The interest in this area has risen over the past years following cases of unexplained mouse toxicity such as the UK cockle toxicity and the French atypical toxicity in mussels and oysters from the Atlantic and Mediterranean coasts. Some attention is given to immuno-, functional and cellular bio-assays for the identification of bioactive agents in shellfish.
Durant les sept dernières années, les méthodes disponibles pour la détection des phycotoxines ont été abondamment revues dans de nombreux groupes internationaux d’expertises, tels que les consultations organisées par FAO/IOC/WHO et EFSA ainsi que dans de nombreux articles scientifiques de synthèse. Ces revues ont démontré que, vis-à-vis des systèmes de régulations officiels, les méthodes disponibles présentent des limites d’utilisation importantes. Soit elles ont un périmètre réduit et des limites de détection trop élevées, soit il y a un manque d’étalons, de matériaux de référence ou d’efforts de validation. La présente revue focalise sur les développements récents dans la détection de phycotoxines en recherche appliquée. Sans vouloir décrire de manière exhaustive tous les développements récents, la revue examine trois domaines d’intérêt pour les auteurs : (i) la détection de quantités ultra-traces de toxines, (ii) la métabolisation et la localisation des toxines dans des tissus biologiques, et (iii) les approches pour la détection de toxines non-répertoriées ou des analogues de toxines connues. La miniaturisation en combinaison avec les techniques physico-chimiques constitue apparemment une approche efficace pour la détection de faibles traces d’analogues individuels des toxines. En particulier, la micro-filtration et des techniques de pré-concentration en ligne se sont montrées utiles pour la détection des azaspiracides et des toxines du groupe de l’acide okadaïque dans la caractérisation de diverses espèces d’algues et de coquillages. Dans le domaine des interactions des toxines avec les coquillages et des systèmes vivants de mammifères, nous avons noté que plusieurs études sur les bio-marqueurs révèlent soit des marqueurs protéiniques d’exposition aux toxines, soit des marqueurs du métabolisme des toxines elles-mêmes. Un intérêt spécifique a été trouvé dans les résultats d’étude sur le métabolisme des brévétoxines et des azaspiracides. La détection des composés bioactifs non-répertoriés constitue un défi particulièrement difficile. Ce domaine a trouvé plus d’intérêt dû à plusieurs cas de toxicités inexpliquées dans le test souris telles que les toxicités observées dans les coques en provenance de Grande-Bretagne ou encore dans les moules et huîtres des côtes méditerranéennes et atlantiques françaises. Une attention particulière a été consacrée à l’identification d’agents bioactifs par les essais cellulaires ou fonctionnels ou basés sur la détection immuno-chimique.

Droits : 2010 SFET
http://archimer.ifremer.fr/doc/00019/12975/9949.pdf
http://archimer.ifremer.fr/doc/00019/12975/

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : Extension fractures of two types defined by the mean stress σ were generated in a synthetic rock analogue material. When σ is very small, the fractures are mode I cracks with smooth surfaces. At higher σ, these surfaces have plumose topography, with the amplitude increasing with σ. Both SEM observations and mechanical measurements show that fractures/discontinuities in the latter case are initiated as dilatancy localization bands. They form under tensile or slightly compressive normal stress and can be seen as running constitutive instabilities. The similarity between the plumose fractography of the experimental fractures and natural joints suggests similarity in the formation mechanism.
ISSN: 1631-0721

hal-00585886
https://hal.archives-ouvertes.fr/hal-00585886
DOI : 10.1016/j.crme.2011.01.002

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Both oedometric and plane-strain tests were performed with parallelepipedic samples made of synthetic granular, cohesive, frictional and dilatant rock analogue material GRAM2. For the first time parallel sets of fractures that have all the characteristics of natural joints were reproduced in the laboratory. The fractures are regularly spaced, normal to σ3, and have plumose morphology very similar to that of natural joints. These fractures can form at tensile stress σ3 much smaller in magnitude than the tensile strength of material and even at slightly compressive σ3. When mean stress σ exceeds a certain value, the fractures become oblique to σ1 (the obliquity increases with σ), forming networks of conjugate shear bands/fractures. These results of plane-strain experiments are in good agreement with those of better controlled conventional axisymmetric tests on a similar material in Chemenda et al. (2011b) and are closer to real geological situations. Both types of experiments are complementary. Their results lead to the conclusion that at least certain categories of natural fractures (including joints, and conjugate shear fractures/bands) were initiated as deformation localization bands. The band orientation is defined by the constitutive properties/parameters (notably the dilatancy factor) that are sensitive to σ.
ISSN: 0040-1951

hal-00795555
https://hal.archives-ouvertes.fr/hal-00795555
DOI : 10.1016/j.tecto.2011.11.021

Éditeur(s) : HAL CCSD
Résumé : For ecology scientists, spatial statistics are a set of tools allowing characterization of the structure of a point set, for instance a map of trees in a forest plot. This structure is defined implicitly as a departure from complete spatial randomness (CSR), the result of a Poisson point process. Inhomogeneity of the process and non-independence of points are its causes. As they cannot be disentangled by analyzing the data, so-called "spatial concentration" or "aggregation" (evenness due to repulsion also exists but is actually rare) usually concerns non-independence while intensity is assumed as known. The literature of point processes and measures of spatial structures is reviewed to clarify concepts and choices. The purpose of this thesis was to produce methodological enhancements. Its main results are: * A test for the most used statistic, Ripley's K function, against the null hypothesis of CSR. It can replace Monte-Carlo simulations used until now in the literature. * An extension of K to inhomogeneous processes, within a typology of available statistics (absolute, relative and topographic measures). When data is available as number of objects per zones (say a number of tree in each forest plot) rather than their exact position, information theory is used to define a general framework allowing to characterize spatial structure (of species) and diversity (of plots) as two aspects of a single measure of inequality. This framework is applied to Shannon's index of biodiversity to derive a self-sufficient definition of beta diversity, its calculation independently from the difference between gamma and alpha diversity, and a statistical test of significance against the null hypothesis that plots are samples of the same community. The way is paved for other applications to measures of diversity and spatial structures. As a conclusion, it appears clear that pattern characterization tools are a first step to deal with ecological questionings. Their development is still a matter of research. Yet, they are far from sufficient to address ecological processes as point processes ignore the temporal aspect of object locations.
Les statistiques spatiales sont pour les écologues un ensemble d'outils permettant de caractériser la structure d'un semis de points, par exemple une carte représentant des emplacements des arbres dans une parcelle de forêt. Cette structure est définie implicitement comme un écart à semis complètement aléatoire, résultat d'un processus de Poisson. L'hétérogénéité du processus ponctuel dont le semis de points est une réalisation et la non-indépendance des points en sont les causes indiscernables, ce qui amène généralement à supposer l'intensité du processus connu et nommer " concentration spatiale " ou " agrégation " (la régularité spatiale est possible, mais rare en pratique) la non-indépendance. Une revue de la littérature des processus ponctuels et des mesures de structures spatiales est fournie pour clarifier les concepts et les choix. L'objectif de ce travail de thèse était de produire des améliorations méthodologiques. Ses résultats principaux sont : * L'établissement d'un test pour la principale statistique utilisée, la fonction K de Ripley, permettant de s'affranchir de la méthode de Monte-Carlo utilisée dans la littérature pour rejeter l'hypothèse nulle d'un processus complètement aléatoire. * L'extension de K aux processus hétérogènes, dans le cadre d'une typologie claire des statistiques (absolues, relatives, topographiques). Lorsque la position exacte des objets n'est pas connue, mais que des effectifs par zone sont disponibles (par exemple des nombres d'arbres par parcelle), la théorie de l'information est utilisée pour définir un cadre général permettant de caractériser la structure spatiale (des espèces dans les parcelles) et la diversité (des parcelles, en termes d'espèces) comme deux aspects d'une même mesure d'inégalité. Ce cadre est appliqué à l'indice de biodiversité de Shannon pour définir clairement la mesure de diversité bêta, son calcul direct indépendamment de la différence entre diversités gamma et alpha, et fournir un test statistique de non nullité. La voie est ouverte pour l'application à d'autres mesures de diversité et de structure spatiale. En conclusion, il semble clair que ces outils de caractérisation sont un premier pas pour traiter les questions écologiques, leur développement étant toujours du domaine de la recherche. Ils sont cependant très insuffisants pour répondre à des questions liées aux processus écologiques, assez éloignés des processus ponctuels qui ignorent l'aspect temporel de l'installation des objets.
https://pastel.archives-ouvertes.fr/pastel-00540327

NNT : 2010AGPT0075
pastel-00540327
https://pastel.archives-ouvertes.fr/pastel-00540327
https://pastel.archives-ouvertes.fr/pastel-00540327/document
https://pastel.archives-ouvertes.fr/pastel-00540327/file/13_Marcon2010.pdf

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Objective: The first aim of this study was to evaluate the antimicrobial resistance of Enterobacteriaceae in different water environments of Guadeloupe and especially those impacted by waste water treatment plants (WWTP) effluents. The second objective was to characterize the genetic basis for antibiotic resistance of extended-spectrum beta-lactamase (ESBL) and AmpC beta-lactamase producing Enterobacteriaceae isolates (ESBLE and AmpCE).Methods: We have collected 70 surface waters (river and sea samples) impacted or not by WWTP and 18 waste waters from 2 WWTPs in 2012 and 2013. We i) determined the total and resistant bacterial counts and ii) tested isolated Enterobacteriaceae for their antimicrobial susceptibility. We also studied the genetic basis for antibiotic resistance of ESBLE and AmpCE, and the genetic background of Escherichia coli.Results: In rivers, contamination with Escherichia coli and antibiotic resistant coliforms (ARC) increased from the source to the mouth. Highest levels of river contamination with E. coli (9.26 x 105 MPN/100mL) and ARC (2.26 x 108 CFU/mL) were observed in surface water sampled near the discharge. A total of 246 Enterobacteriaceae strains resistant to antibiotics were isolated, mostly from waste waters and from river water collected near the discharge. Among these strains, 33 were Extended Spectrum Beta Lactamase (ESBLE) and 8 E. coli were AmpC beta-lactamase producers. All the ESBLE were isolated from waste waters or from river water collected near the discharge. The blaCTX-M gene was present in 29 of the 33 ESBLE strains, with 24 belonging to group 1. Numerous strains (68.7%) showed more than one acquired antibiotic resistance mechanism. E. coli strains belonged to different phylogenetic groups; among the B2 group, most strains belonged to the ST131 clone.Conclusion: Our results demonstrated that many human activities can supply antibiotic-resistant bacteria in surface water. Nevertheless, WWTPs were the most important supplier of ESBLE in water environment of Guadeloupe.
ISSN: 1932-6203

Droits : http://creativecommons.org/licenses/by/
hal-01485327
http://hal.upmc.fr/hal-01485327
http://hal.upmc.fr/hal-01485327/document
http://hal.upmc.fr/hal-01485327/file/journal.pone.0173155.pdf
DOI : 10.1371/journal.pone.0173155.t002

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : We examined tree-soil habitat associations in lowland forest communities at Paracou, French Guiana. We analyzed a large dataset assembling six permanent plots totaling 37.5 ha, in which extensive LIDAR-derived topographical data and soil chemical and physical data have been integrated with precise botanical determinations. Map of relative elevation from the nearest stream summarized both soil fertility and hydromorphic characteristics, with seasonally inundated bottomlands having higher soil phosphate content and base saturation, and plateaus having higher soil carbon, nitrogen and aluminum contents. We employed a statistical test of correlations between tree species density and environmental maps, by generating Monte Carlo simulations of random raster images that preserve autocorrelation of the original maps. Nearly three fourths of the 94 taxa with at least one stem per ha showed a significant correlation between tree density and relative elevation, revealing contrasted species-habitat associations in term of abundance, with seasonally inundated bottomlands (24.5% of species) and well-drained plateaus (48.9% of species). We also observed species preferences for environments with or without steep slopes (13.8% and 10.6%, respectively). We observed that closely-related species were frequently associated with different soil habitats in this region (70% of the 14 genera with congeneric species that have a significant association test) suggesting species-habitat associations have arisen multiple times in this tree community. We also tested if species with similar habitat preferences shared functional strategies. We found that seasonally inundated forest specialists tended to have smaller stature (maximum diameter) than species found on plateaus. Our results underline the importance of tree-soil habitat associations in structuring diverse communities at fine spatial scales and suggest that additional studies are needed to disentangle community assembly mechanisms related to dispersal limitation, biotic interactions and environmental filtering from species-habitat associations. Moreover, they provide a framework to generalize across tropical forest sites.
ISSN: 1932-6203

hal-01260289
https://hal.archives-ouvertes.fr/hal-01260289
PRODINRA : 342930
DOI : 10.1371/journal.pone.0141488

Éditeur(s) : HAL CCSD
Résumé : 27 pages
Cascade Stochastic Differential Equation (SDE), a continuous time model for energy dissipation in turbulence, is a generalization of the Yaglom discrete cascade model. We extend this SDE to a model in random environment by assuming that its two parameters are switched by a continuous time Markov chain whose states represent the states of the environment. Moreover, a Dirichlet process is placed as a prior on the space of sample paths of this chain. We propose a Bayesian estimation method of this model which is tested both on simulated data and on real data of wind speed measured at the entrance of the mangrove ecosystem in Guadeloupe.
https://hal.archives-ouvertes.fr/hal-00286131

hal-00286131
https://hal.archives-ouvertes.fr/hal-00286131
https://hal.archives-ouvertes.fr/hal-00286131/document
https://hal.archives-ouvertes.fr/hal-00286131/file/Srik11_PhysicaDDspace.pdf

Résumé : Les mécanismes à l’origine du maintien de la forte diversité locale des arbres des forêts tropicales humides constituent encore une énigme pour les scientifiques. Cette thèse a pour but d’étudier et de comprendre certains facteurs biotiques et abiotiques qui influencent l’assemblage des communautés des forêts tropicales humides d’Amazonie. A l’aide d’une approche empirique conduite dans les forêts tropicales de Guyane française et du Loreto au Pérou, de nombreuses expériences de terrain ont été mises en place dans le but d’apporter des éléments de réponse sur les mécanismes impliqués dans le maintien de la diversité des communautés d’arbres et d’insectes des forêts amazoniennes. Dans un premier temps, cette thèse permet de souligner l’importance des pressions biotiques exercées sur les communautés d’arbres. En effet, les communautés d’insectes peuvent influencer la composition des communautés d’arbres le long d’un gradient environnemental conduisant à des compromis entre la défense et la croissance. Ces compromis ou tradeoff permettent de maintenir la coexistence des espèces de forêts tropicales humides en favorisant la spécialisation des arbres à leur habitat (Chapitre 1, Annexe 3). Cependant, de nombreux facteurs peuvent engendrer des variations dans les compromis d’allocation exhibés par les plantes, ce qui peut compliquer la validité de ces résultats. Dans ce sens, nous avons souligné l’influence du rôle de la cascade trophique et l’existence chez certaines espèces d’arbres de stratégies d’évitement des insectes (Chapitre 2). Dans un second temps, nous avons montré que les filtres environnementaux et les distances géographiques favorisent un fort turnover de la composition des arthropodes des forêts tropicales (chapitre 3, Annexe 2). Les résultats de cette étude ont des implications fondamentales sur les mécanismes qui expliquent la structuration des communautés d’insectes herbivores. Nous avons souligné l’importance de l’interaction des communautés des insectes herbivores et de leurs plantes associées. De plus, des prédictions sont présentées sur le degré de spécialisation des insectes à leur plante-hôte (Annexe 3), notamment sur les implications possibles dans les compromis d’allocation chez les plantes. Finalement, des perspectives de recherche sont proposées en vue de poursuivre ces travaux de recherche, et notamment des extensions de mes expériences vers d’autres régions tropicales et tempérées et l’intégration de la phylogénie pour comprendre des mécanismes de coévolution entre communautés d’arbres et insectes. Nous proposons également une intégration des résultats de cette thèse dans les stratégies locales et régionales de conservation des forêts tropicales du bassin amazonien.
The mechanisms underlying the maintenance of local diversity of trees in tropical rainforests remain under debate. This dissertation aims to study and understand some biotic and abiotic factors that may influence both tree and insect community assembly in lowland tropical forests of Amazonia. I used an empirical approach to study communities of trees and insects in tropical forests of French Guiana and Peru, to address the extent to which insect herbivores contribute to the turnover of tree species across strong environmental gradients. In Chapter 1, I studied how herbivorous insect communities can influence the composition of tree communities along an environmental gradient by reinforcing tradeoffs between defense and growth that promote habitat specialization (Chapter 1, Appendix 3). The complicated variation in the patterns of growth and defense from this study led me to pursue further observations of an alternative plant defense strategy of time-avoidance of herbivores, which I examined in detail in Chapter 2. I found evidence for coordinated leaf production in some tree species that was consistent with the satiation of herbivores, suggesting that multiple interactions between plants and their herbivores may be responsible for patterns of habitat specialization in trees. In the second part of the dissertation, I examined insect herbivore communities in detail to test for turnover in species composition across geographic and environmental gradients. In Chapter 3, I present evidence for substantial beta-diversity in arthropod communities throughout lowland Amazonian forests. In the discussion I propose research perspectives to complete this research, including the extension of observations to compare tropical and temperate regions and the integration of molecular phylogenetics information to study coevolution of plant lineages and their insect herbivores. I conclude with suggestions for the integration of the results of this thesis in local and regional strategies for the preservation and conservation of tropical forests in the Amazon basin.

http://www.theses.fr/2013AGUY0582/document

Éditeur(s) : HAL CCSD Wiley
Résumé : [b]1.[/b] Plant functional traits, in particular specific leaf area (SLA), wood density and seed mass, are often good predictors of individual tree growth rates within communities. Individuals and species with high SLA, low wood density and small seeds tend to have faster growth rates.[br/][br/][b]2.[/b] If community-level relationships between traits and growth have general predictive value, then similar relationships should also be observed in analyses that integrate across taxa, biogeographic regions and environments. Such global consistency would imply that traits could serve as valuable proxies for the complex suite of factors that determine growth rate, and, therefore, could underpin a new generation of robust dynamic vegetation models. Alternatively, growth rates may depend more strongly on the local environment or growth–trait relationships may vary along environmental gradients.[br/][br/][b]3.[/b] We tested these alternative hypotheses using data on 27 352 juvenile trees, representing 278 species from 27 sites on all forested continents, and extensive functional trait data, 38% of which were obtained at the same sites at which growth was assessed. Data on potential evapotranspiration (PET), which summarizes the joint ecological effects of temperature and precipitation, were obtained from a global data base.[br/][br/][b]4.[/b] We estimated size-standardized relative height growth rates (SGR) for all species, then related them to functional traits and PET using mixed-effect models for the fastest growing species and for all species together.[br/][br/][b]5.[/b] Both the mean and 95th percentile SGR were more strongly associated with functional traits than with PET. PET was unrelated to SGR at the global scale. SGR increased with increasing SLA and decreased with increasing wood density and seed mass, but these traits explained only 3.1% of the variation in SGR. SGR–trait relationships were consistently weak across families and biogeographic zones, and over a range of tree statures. Thus, the most widely studied functional traits in plant ecology were poor predictors of tree growth over large scales.[br/][br/][b]6.[/b] Synthesis. We conclude that these functional traits alone may be unsuitable for predicting growth of trees over broad scales. Determining the functional traits that predict vital rates under specific environmental conditions may generate more insight than a monolithic global relationship can offer.
ISSN: 0022-0477

hal-01204226
https://hal.archives-ouvertes.fr/hal-01204226
DOI : 10.1111/1365-2745.12401
PRODINRA : 307144