Éditeur(s) : INRA : Institut National de la Recherche Agronomique CIRAD : Centre de Coopération Internationale en Recherche Agronomique pour le Développement Université des Antilles. Service commun de la documentation
Extrait de : 52e congrès annuel de la Société caribéenne des plantes alimentaires / 52nd annual meeting of the Caribbean food crops society (CFCS), du 10 au 16 juillet 2016. INRA, CFCS
Description : Acknowledging the contribution of agriculture to global changes and its negative impacts on the environment, it is now seen as unavoidable for it to participate to the ecological transition. This research aims to understand the performativity of legal texts. This performativity does not only reveal the institutions? approach of the model to implement. It also aims to change, in the meantime, the reality (Ambroise et al., 2015). The objective of this research is to stress the importance of concepts? definitions in policies implementation when agricultural system reframing is at stake, and to highlight an uncertain use of words may produce. However, little attention is given to the choice of terms concerning the definition of a greener agriculture in official texts: terms are often mixed up without any clarification. Applying content analysis to official documents, we provide an analytical grid to grasp in what extent the unclear use of words and what they namely designate, lead to ambiguous policies eluding aspects of the concept of agroecology underlined by researchers or associations. We also shed light on the local appropriation process of the concept and its specification in the French Indies. Reconnaissant la contribution de l'agriculture aux changements globaux et à ses impacts négatifs sur l'environnement, on le voit maintenant comme inévitable pour qu'il participe à la transition écologique. Objectifs de ces recherches pour comprendre le performativity des textes juridiques. Ce performativity indique non seulement l'approche des établissements du modèle à l'instrument. Il vise également à changer, dans le même temps, la réalité (Ambroise et autres, 2015). L'objectif de cette recherche est de souligner l'importance des définitions des concepts dans l'exécution de politiques quand le système agricole reframing est en jeu, et accentuer une utilisation incertaine des mots peut produire. Cependant, peu d'attention est accordée au choix des termes au sujet de la définition d'une agriculture plus verte en textes officiels : des termes sont souvent mélangés sans n'importe quelle clarification. S'appliquant à l'analyse du contenu aux documents officiels, nous fournissons une grille analytique à la prise dans quelle ampleur l'utilisation peu claire des mots et ce qu'ils à savoir indiquent, mènent aux politiques ambiguës éludant des aspects du concept de l'agroécologie souligné par des chercheurs ou des associations. Nous avons également jeté la lumière sur le processus local d'appropriation du concept et de ses spécifications dans les Antilles françaises.
Siècle(s) traité(s) : 21
Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V16255
V16255

Éditeur(s) : Université de La Rochelle
Résumé : Shrimp aquaculture in New Caledonia is a developing industry, exclusively based on the species Litopenaeus stylirostris. However, it is subject to mortalities during grow out as observed all over the world. Since 1993, shrimp reared during the cold period are affected by a disease named "syndrome 93". As a consequence, the whole industry has become seasonal and produces essentially during the warm season. The climatic conditions during the periods of transition between the two main seasons could be responsible for an environmental stress and the origin reason for mortality outbreaks. Stocking density is the main risk factor. It increases the probability of the appearance and development of the epizooty in the pond. The "Summer Syndrome", a septicemic vibriosis caused by Vibrio nigripulchritudo, was identified for the first time in December 1997 in an intensive shrimp farm (DF). It has become enzootic ever since and is expressed after 50d of rearing. Since 2003, two others farms located near DF have developed the disease. As a consequence, the summer syndrome is considered to be a potential threat for all the industry. Between 1991 and 2005, the increase of feed input and nitrogen levels in feed has led to a significant increase in the growth rate over the years in the farms affected by the disease. In consequence, an early eutrophication of the water is observed, which is concomitant with the beginning of the mortality outbreaks. An early eutrophication and the virulence level of the pathogen are considered as the main risk factors of the disease. Factors may act synergistically to explain the summer syndrome. As part of a multidisciplinary approach (pathology – physiology – environment), two high-frequency surveys were carried out to analyse the pond ecosystem. Since the feed quantity increases with the biomass of shrimp, the eutrophication level of the pond ecosystem will also tend to increase with the duration of rearing. During the first part of the rearing, the abundance of each picoplankton type is exceptionally high and picophytoplankton dominated the autotrophic compartment. The nanophytoplankton dominated the second part of the rearing and was more unstable. The shift from pico to nanophytoplankton could be considered as an environmental stress and was observed in relation to the beginning of the mortalities, whatever the disease. Shift intensity could play a role by inducing directly or indirectly a stress for shrimp and/or a growth and/or virulence factors of the pathogen. Results from sediment studies show that mortality was best characterized by TAN concentration in pore water and even more when the TAN concentration was high. TAN and pH are potential stress factors for shrimp reared in ponds affected by these diseases.
L'aquaculture mondiale de crevettes est un secteur à très forte croissance. Toutefois, les problèmes liés aux maladies dans les élevages ne cessent d'augmenter depuis 1980. Au cours du développement de la filière de Nouvelle-Calédonie, deux épisodes saisonniers de mortalités associées à la présence de Vibrio pathogènes sont apparus et ont fortement perturbé les techniques et les schémas de production. Les premières mortalités hivernales, décrites sous le nom de « syndrome 93 » ont été observées en mai 1993. Elles ont affecté depuis tous les élevages de saison froide de toutes les fermes de production. Les conditions climatiques pendant les périodes de transitions entre les deux principales saisons caractérisant le climat de la Nouvelle-Calédonie, seraient responsables d'un stress environnemental à l'origine du déclenchement du syndrome 93. La densité initiale d'ensemencement, apparaît comme le principal facteur de risque, augmentant la probabilité d'apparition de la maladie et l'ampleur de ses effets. Le « syndrome d'été » a été identifié pour la première fois en 1997 dans une ferme pratiquant une production intensive. Il s'est déclaré depuis 2003 dans deux autres fermes géographiquement proches. Les mortalités apparaissent 58 jours en moyenne après l'ensemencement des post-larves dans les bassins. La recherche d'une croissance maximale des animaux a induit, avec les années, une intensification progressive du système caractérisée par une augmentation de la quantité d'aliment distribuée. L'examen des données historiques fait apparaître une eutrophisation du milieu de plus en plus précoce concomitante au déclenchement des mortalités. En l'état actuel de nos connaissances, cette évolution précoce de l'écosystème en présence de façon récurrente de la souche hautement pathogène du Vibrio incriminé et à une période où la fréquence des mues des crevettes est élevée, constitue le principal facteur de risque de la maladie. Avec l'apport croissant en aliment, la colonne d'eau évolue vers une autotrophie croissante alors que le sédiment devient de plus en plus hétérotrophe au fur et à mesure que l'élevage progresse. Au cours du processus d'eutrophisation, le compartiment autotrophe montre une succession de deux assemblages. Le picophytoplancton domine sur la première partie de l'élevage et laisse place à du nanophytoplancton en seconde partie. Cette phase de transition, concomitante à l'apparition des mortalités quel que soit le syndrome, caractérise un stress environnemental dont l'intensité pourrait favoriser ou non le déclenchement des mortalités. Les suivis de différents indicateurs dans les sédiments - pH, potentiel d'oxydoréduction et concentration en ammoniaque dans l'eau interstitielle – indiquent dans les bassins déclarant les épizooties des conditions qui ont été définies expérimentalement comme potentiellement plus stressantes pour les animaux.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2007/these-2643.pdf
http://archimer.ifremer.fr/doc/00000/2643/

Éditeur(s) : Elsevier
Résumé : The effect of ambient ammonia and molt stage on the physiological response of the blue shrimp Litopenaeus stylirostris was studied. Shrimps were submitted to 54.6 mg l(-1) ammonia-N (1.76 mg l(-1) NH3-N) for 24 h. Only shrimps in stages C, D-0, D-1 and D-2 were used for the analysis. Haemolymph was assayed for osmoregulatory capacity (OC), magnesium ion (Mg ion), total proteins, oxyhaemocyanin, lactate and glucose. Molt stage had an effect on OC, Mg ion and total proteins in control shrimps, and on OC, Mg ion and lactate in treated animals. Ammonia treatment decreased OC and lactate, and increase Mg ion concentration in haemolymph, for all molt stages. It decreased significantly total proteins and oxyhaemocyanin for stages D-1 and D-2, and increased glucose concentration for stages C and Do. There was a combined effect of treatment and molt stage only on total proteins concentration. The effects of an external factor (ammonia), an internal one (molt stage) and the combination of both, and the usefulness of using physiological parameters measured in this study as tools to detect stress, are discussed. (C) 2004 Elsevier B.V. All rights reserved.
Journal of Experimental Marine Biology and Ecology (0022-0981) (Elsevier), 2004-09 , Vol. 309 , N. 1 , P. 35-46

Droits : 2004 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2004/publication-371.pdf
DOI:10.1016/j.jembe.2004.03.008
http://archimer.ifremer.fr/doc/00000/371/

Résumé : En 2013, Le Groupe d'experts Intergouvernemental sur l'Evolution du Climat (GIEC) publie son cinquième rapport concernant les changements climatiques. Il y est souligné que le réchauffement climatique est sans équivoque, et que de nouvelles émissions de gaz à effet de serre impliqueront une poursuite du réchauffement et des changements affectant toutes les composantes du système climatique. En région tropicale, une hausse de la température, ainsi qu'une intensification des événements de sécheresse et de pluviométrie extrêmes sont à prévoir. C'est dans ce contexte que s'inscrit ce travail, dont le but est d'étudier la réponse de la forêt tropicale à ces changements climatiques prédits en Guyane Française. Pour ce faire, j'ai utilisé les données du dispositif de suivi forestier de Paracou pour construire un modèle de dynamique individuel basé sur les traits fonctionnels des arbres. Un modèle de mortalité a d'abord été réalisé puis couplé à un modèle de croissance.Le modèle couplé ainsi construit permet de modéliser la croissance et la mortalité des arbres sur un pas de temps de 2 ans tout en tenant compte de leur ontogénie et de leurs traits fonctionnels. Ce modèle a d'abord été appliqué aux essences commerciales de Guyane Française en forêt naturelle et exploitée en y ajoutant un indice de stress hydrique. Ceci permet de montrer que le stress hydrique fait baisser la croissance et augmenter la mortalité, tandis que l'exploitation a l'effet inverse. Malgré le signal commun, différentes réponses sont observées selon les espèces. Le modèle a ensuite été appliqué à la communauté en forêt naturelle pour identifier les drivers climatiques et les processus impactés. Il ressort que la croissance est impactée par le stress hydrique et la température, et que la mortalité est impactée par le stress hydrique et la pluviométrie totale.Ces résultats ont enfin permis de construire un modèle complet de dynamique forestière climat dépendant, et de simuler l'évolution d'une communauté pendant un siècle selon différents scénarios correspondant aux prédictions du GIEC. Les simulations mettent en évidence une très forte diminution de la croissance, ainsi qu'une plus faible diminution de la mortalité. Ceci entraine une diminution notable de la surface terrière, du diamètre quadratique et de la biomasse fraiche. Une analyse de sensibilité montre que ces changements sont principalement dus à l'augmentation sévère des températures prédites pour le siècle à venir. Des pistes de réflexion sur les enjeux de modélisation et les échelles considérées sont proposées en discussion de ce travail.
In 2013 the intergovernmental panel on climate change (ipcc) publishes its fifth report. This report underlines that an increase of temperature and a strengthening of drought and extreme rainfall are expected in tropical regions. This work was made in this context of climate changes, and aimed to study the response of the rainforest to predicted climate changes. To do this, i used the data from the study site of Paracou French Guiana to build an individual based dynamics model based on the functional traits of trees. This model was first applied to species with a commercial interest in French Guiana, in natural and logged forest and adding a water stress index as predictor. Water stress decreases growth and increases mortality, while logging had the opposite effect. The model was then applied to the community in natural forest for identifying potential climate drivers and impacted processes. Growth is impacted by the water stress and temperature and mortality is imp acted by the water stress and the total rainfall. These results allowed us to build a climate dependent model of forest dynamics and to run simulations of the evolution of a community under different scenarios for the next century. Simulations showed a decrease of growth and a small decrease of mortality. This resulted in a substantial decrease of basal area, squared diameter and fresh biomass.

http://www.theses.fr/2014AGUY0802/document

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
Although magmatism may occur during the earliest stages of continental rifting, its role in strain accommodation remains weakly constrained by largely 2-D studies. We analyze seismicity data from a 13 month, 39-station broadband seismic array to determine the role of magma intrusion on state-of-stress and strain localization, and their along-strike variations. Precise earthquake locations using cluster analyses and a new 3-D velocity model reveal lower crustal earthquakes beneath the central basins and along projections of steep border faults that degas CO2. Seismicity forms several disks interpreted as sills at 6-10 km below a monogenetic cone field. The sills overlie a lower crustal magma chamber that may feed eruptions at Oldoinyo Lengai volcano. After determining a new ML scaling relation, we determine a b-value of 0.87±0.03. Focal mechanisms for 65 earthquakes, and 13 from a catalogue prior to our array reveal an along-axis stress rotation of ∼60° in the magmatically active zone. New and prior mechanisms show predominantly normal slip along steep nodal planes, with extension directions ∼N90°E north and south of an active volcanic chain consistent with geodetic data, and ∼N150°E in the volcanic chain. The stress rotation facilitates strain transfer from border fault systems, the locus of early-stage deformation, to the zone of magma intrusion in the central rift. Our seismic, structural, and geochemistry results indicate that frequent lower crustal earthquakes are promoted by elevated pore pressures from volatile degassing along border faults, and hydraulic fracture around the margins of magma bodies. Results indicate that earthquakes are largely driven by stress state around inflating magma bodies.
ISSN: 1525-2027

hal-01667198
https://hal.archives-ouvertes.fr/hal-01667198
DOI : 10.1002/2017GC007027

Éditeur(s) : EDP Sciences
Résumé : During 84 days, the effects of density on juvenile sea bass (Dicentrarchus labrax) (76 +/- 16 g) were studied in an experimental tank-based flow through system. Performance, stress response and resistance to virus infection were analysed under five stabilized rearing densities: 10, 20, 40, 70 and 100 kg m(-3). Water quality parameters (CO2, total ammonia nitrogen and O-2) were measured and maintained close to the recommended values for farmed sea bass by adjusting water renewal exchange. No significant differences were observed between density treatments, neither on stress response (cortisol) nor susceptibility to nodavirus. With regards to biological performances, the daily feed intake and specific growth rate were significantly lower in fish reared at the 100 kg m(-3) density. Results on the effects of density in sea bass reared in flow through (present study) and in recirculating aquaculture systems (RAS) (Sammouth et al. 2009) were compared as a contribution to the identification of density not affecting health and welfare in farmed sea bass.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2010-01 , Vol. 23 , N. 1 , P. 109-117

Droits : 2010 EDP Sciences, IFREMER, IRD
http://archimer.ifremer.fr/doc/00002/11287/7824.pdf
DOI:10.1051/alr/2009056
http://archimer.ifremer.fr/doc/00002/11287/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We review the evolution of concepts on and methods of estimating the state of stress from fault movements. Theories of failure in isotropic materials suggested a simple geometrical construction of optimal principal stress directions from a fault plane and its associated slip. These optimal directions align shear stress and slip directions and maximize the difference between shear stress and frictional resistance on the fault plane. Optimal stress directions for calcite twinning are obtained by a similar construction, with the difference that they maximize shear stress. Force representation of seismic sources independently introduced pressure, P, and tension, T, axes at positions that also maximize shear stress on both nodal planes. Frictional slip theory and the constraint that slip and shear stress directions be parallel allowed to address reactivation of pre-existing faults. This suggested that stress could also be inverted from reactivated fault and slip data or earthquake focal mechanisms. Early methods relied on geometrical constructions as a substitute for calculations, whereas later methods relied on software as these calculations became tractable with the help of computers. Similar methods were developed for the inversion of stress from crystal twin gliding with non-optimal geometry, with a different criterion that relies on a threshold of the component of shear stress along the gliding line. Even though these methods seek a common stress tensor compatible with fault and slip data, their main use is to separate polyphase data into homogeneous subsets and help deciphering complex tectonic histories. Fault and slip data can also be analyzed to constrain the strain rather than the stress tensor. In most cases this involves a summation and yields an average strain for the considered rock volume. Stress inversion thus appears better suited for differentiating heterogeneous data whereas strain analysis appears better suited for homogenizing them.
ISSN: 0040-1951

hal-00759043
https://hal.archives-ouvertes.fr/hal-00759043
DOI : 10.1016/j.tecto.2012.02.009

Éditeur(s) : HAL CCSD
Résumé : The ecological success of cnidarian-dinoflagellate symbiosis mainly relies on nutrient recycling. Environmental changes, such as global warming or pollution, often result to symbiosis breakdown, also called cnidarian bleaching. The understanding of mechanisms regulating the symbiosis establishment, maintenance and breakdown is essential to prevent massive bleaching phenomena. In this respect, my PhD project focused on the characterization of chemical mediators expressed in the sea anemone Anemonia viridis, their localization and their modulation by stress conditions. A comparative study was first conducted to characterize the chemical mediators and analyze their distribution within the symbiotic sea anemone. We described a great abundance and diversity of lipids in A. viridis tissues. From these results, we proposed possible transfers of FAs between the symbiotic partners. A thermal stress and a chemical stress have also been applied in laboratory-controlled conditions in order to induce symbiosis breakdown and bleaching of the sea anemones, in order to correlate A. viridis metabolome to its symbiotic status. A mapping of these metabolites has been performed by MALDI-MSI of tentacle cross-sections, as well as their evolution following stress. Some betaine lipids have thus been proposed as short-term indicators of stress. A. viridis stress response has also been evaluated with a lipidomic approach, and allowed to identify 3 lipid indicators of early stress response based on membrane fluidity markers. Overall, this study provides insight on key chemical mediators that may regulate the symbiosis maintenance, and may contribute to the symbiosis breakdown.
Le succès évolutif des Cnidaires symbiotiques réside en grande partie dans leurs échanges trophiques établis avec les Dinoflagellés du genre Symbiodinium. Cependant, le réchauffement climatique global ainsi que les pollutions ont un impact fort sur les écosystèmes coralliens, notamment en conduisant à la rupture de la symbiose, phénomène appelé blanchissement. La compréhension des mécanismes qui régissent l’établissement, le maintien et la rupture de la symbiose est essentielle à la prévention des épisodes de blanchissement massif. Dans ce contexte, les objectifs de mon projet de thèse sont de caractériser les médiateurs chimiques de l’anémone de mer Anemonia viridis, de les localiser, et d’analyser leur réponse face à un stress. Parmi les composés caractérisés, les lipides et les bétaïnes sont les plus abondants et présentent une grande diversité. Certains sont transférés des symbiotes vers l’hôte. Des anémones de mer ont ensuite été traitées en laboratoire afin de provoquer la rupture de la symbiose et le blanchissement des individus. Une étude cinétique a été menée par une approche globale comparative identique à celle réalisée sur l’anémone symbiotique. Par ailleurs, une cartographie de l’évolution de composés clé a été réalisée par MALDI-MSI. La réponse au stress a été évaluée et a permis d’identifier des lipides de bétaïne et trois indicateurs lipidiques comme marqueurs de réponse précoce au stress. L’ensemble de ces résultats apporte de nouveaux éléments de réponse concernant le rôle des médiateurs chimiques clés dans le maintien de la symbiose, ainsi que leur influence sur sa rupture.
https://tel.archives-ouvertes.fr/tel-01310668

NNT : 2015NICE4108
tel-01310668
https://tel.archives-ouvertes.fr/tel-01310668
https://tel.archives-ouvertes.fr/tel-01310668/document
https://tel.archives-ouvertes.fr/tel-01310668/file/2015NICE4108.pdf

Éditeur(s) : Université de Pau et des Pays de l'Adour
Résumé : In a context of decline of European eel (Anguilla anguilla L.) and search for biological markers of habitat use and quality, a multidisciplinary approach was engaged on the Adour estuary and its associated wetlands. Two axes were developed. The first axe aimed at highlighting the successive presence of the species in different ecosystems based on the otolith elemental composition. The second aimed at the evaluation of the chemical pressure underwent by eels based on the contaminant bioconcentration in soft tissues and the early molecular response to the chemical stress. With a view to the analyses of otolith elemental composition taking into account the 3D structure, the low elemental concentration in the matrix and keeping the finest spatial resolution, four micro sampling strategies and multi elemental analyses using femtosecond laser ablation ICP-MS were tested (crater, 1D scan, 2D scan, flash ablation). The strategy showing the best compromise according to the objectives (continuous recording, multi elemental approach) was applied on otolith of yellow eels from the Adour. The simultaneous use of Sr and Ba profiles, after validation, represents a new tool, easy, fast and reliable for the reconstruction of freshwater and brackish ecosystems use by eel avoiding misinterpretation due to vaterite inclusions. Three major behaviors were highlighted on the Adour: a residency in brackish water, a residency in freshwater and nomad behavior. The last one is illustrated by a shift to brackish water after three to four years spent in freshwater. Simultaneously, the study of inorganic and organic contamination of eel soft tissues showed that sampled wetlands are moderately contaminated. These results were confirmed by the first estimation, in wild conditions, of the early response to the chemical stress using the hepatic expression of CYP1A1 gene measured by real time RT-PCR. Conversely, in the downstream part of the Adour estuary, Hg loads in eels, especially methyl mercury, and PCBs analyses indicate values that need further investigations considering the European norms of consumption. The comparison of the different markers used (heavy metal and organochlorinated compounds contamination of soft tissues, condition index) support a lower quality of the estuary despite higher eel growth rate on this site. This study supports the use of numerous markers in integrated studies in order to understand and specify the relationships between eels and their continental growth zones.
Dans un contexte de déclin de l'anguille européenne (Anguilla anguilla L.) et de recherche de marqueurs biologiques retraçant la fréquentation des divers habitats et renseignant sur la qualité de ceux-ci, une approche pluridisciplinaire a été mise en place sur l'estuaire de l'Adour et ses zones humides. Deux axes ont été privilégiés. Le premier cherchait à visualiser la présence successive de l'espèce dans différents écosystèmes en se basant sur la composition élémentaire des otolithes. Le deuxième avait pour but d'évaluer la pression chimique inorganique et organique subie par l'anguille dans les zones d'études en s'appuyant sur la bioconcentration des contaminants dans les tissus mous et la réponse moléculaire précoce au stress chimique. En vue des analyses de la composition élémentaire des otolithes et pour répondre au mieux à la structure en trois dimensions, à la faible concentration des éléments dans la matrice tout en conservant une résolution spatiale la plus fine possible, quatre stratégies de micro-échantillonnage et d'analyses multiélémentaires par ablation laser femtoseconde ICP-MS ont été testées (cratère, scan 1D, scan 2D, ablation flash). La méthodologie présentant le meilleur compromis par rapport aux objectifs fixés (enregistrement continu, approche multiélémentaire) a ensuite été appliquée sur les otolithes d'anguilles jaunes du Bas-Adour. L'utilisation simultanée des profils continus de Sr et de Ba, après validation, constitue un outil facile d'utilisation, rapide et fiable pour reconstruire les historiques de fréquentation des différents écosystèmes estuariens et dulçaquicoles par l'anguille tout en s'affranchissant des problèmes potentiels liés aux inclusions de vatérite, un polymorphe du carbonate de calcium. Trois grands types de comportement ont pu être mis en évidence sur l'Adour : résidence en eau saumâtre, résidence en eau douce et nomadisme. Ce dernier est plus particulièrement illustré par un mouvement marqué vers l'eau saumâtre pour des individus ayant passé de trois à quatre ans dans l'eau douce. Parallèlement, l'étude de la contamination organique et inorganique des tissus mous de l'anguille a permis de déduire à la faible contamination des zones humides échantillonnées. La première estimation en condition naturelle de la réponse précoce au stress chimique par évaluation de l'expression hépatique du gène CYP1A1 par RT-PCR en temps réel confirme ces résultats. En revanche, dans la partie estuarienne aval de l'Adour, les niveaux en Hg, présent en majorité sous sa forme méthylée dans les anguilles, et l'analyse des PCBs indiquent des valeurs qui suscitent un examen plus approfondi au regard des normes européennes en vigueur. La confrontation des différents descripteurs (contamination des tissus mous par les métaux lourds et organochlorés, indice de condition) utilisés conforte la qualité moindre de la zone estuarienne malgré des performances de croissance de l'anguille favorisées sur ces sites. Ainsi, cette étude supporte l'intérêt de la mise en oeuvre de descripteurs multiples utilisés (niveaux de métaux lourds et organochlorés dans les tissus mous, réponse moléculaire au stress chimique, microchimie de l'otolithe, indice de condition, taux de croissance) dans des approches intégrées pour comprendre et préciser les relations existantes entre l'anguille et ses zones de croissance continentales.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2009/these-7381.pdf
http://archimer.ifremer.fr/doc/00000/7381/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Cnidarians living in symbiosis with photosynthetic dinoflagellates (commonly named zooxanthellae) are exposed to high concentrations of reactive oxygen species (ROS) upon illumination. To quench ROS production, both the cnidarian host and zooxanthellae express a full suite of antioxidant enzymes. Studying antioxidative balance is therefore crucial to understanding how symbiotic cnidarians cope with ROS production. We characterized glutathione peroxidases (GPx) in the symbiotic cnidarian Anemonia viridis by analysis of their isoform diversity, their activity distribution in the three cellular compartments (ectoderm, endoderm and zooxanthellae) and their involvement in the response to thermal stress. We identified a GPx repertoire through a phylogenetic analysis showing 7 GPx transcripts belonging to the A. viridis host and 4 GPx transcripts strongly related to Symbiodinium sp. The biochemical approach, used for the first time with a cnidarian species, allowed the identification of GPx activity in the three cellular compartments and in the animal mitochondrial fraction, and revealed a high GPx electrophoretic diversity. The symbiotic lifestyle of zooxanthellae requires more GPx activity and diversity than that of free-living species. Heat stress induced no modification of GPx activities. We highlight a high GPx diversity in A. viridis tissues by genomic and biochemical approaches. GPx activities represent an overall constitutive enzymatic pattern inherent to symbiotic lifestyle adaptation. This work allows the characterization of the GPx family in a symbiotic cnidarian and establishes a foundation for future studies of GPx in symbiotic cnidarians.
ISSN: 0300-9084

hal-01404424
http://hal.upmc.fr/hal-01404424
http://hal.upmc.fr/hal-01404424/document
http://hal.upmc.fr/hal-01404424/file/Pey_Characterization_of.pdf
DOI : 10.1016/j.biochi.2016.10.016

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
The mantle above a subducting slab is the site of complex interactions between deformation, partial melting, fluid migration and magma transport. To constrain these interactions and their effects on olivine deformation, we analyze microstructures, crystal preferred orientations, and water contents of peridotite xenoliths entrained by andesites of the Avacha volcano, southern Kamchatka arc. These xenoliths are refractory spinel harzburgites that have coarse-grained microstructures with widely spaced subgrain boundaries and sinuous grain boundaries in olivine, consistent with deformation by dislocation creep under low deviatoric stress (< 13 MPa) and with a significant contribution from diffusional processes. Analysis of crystal preferred orientations (CPO) indicates dominant activation of high-temperature, low-stress {0kl}[100] slip systems in olivine and of(100)[001] in orthopyroxene. In most samples, coarse opx crystals, elongated parallel to the lineation, enclose small olivine grains in crystallographic continuity with neighbouring crystals, indicating crystallization of orthopyroxene at the expense of olivine as a result of reactive percolation of Si-rich fluids coeval with the high-temperature deformation. Secondary crystallization of interstitial orthopyroxene led locally to development of opx-rich lenses parallel to the foliation, characterized by a decrease in olivine grain size and dispersion of the olivine CPO without changing the dominant slip systems. Half of the samples also show acicular orthopyroxene aggregates with which is associated a fine-grained matrix composed of rounded strain-free olivine, orthopyroxene, spinel, and rare amphibole crystals. This matrix occurs pervasively along grain boundaries or forms millimeter-scale irregular lenses and anastomosing veinlets that crosscut the coarse crystals and their ductile deformation structures. Both acicular orthopyroxene and the fine-grained matrix are interpreted as resulting from reactive transport of H2O-rich fluids under static conditions, probably in the lithospheric mantle. Infrared analyses show that olivine contains 1-8 center dot 6 ppm by weight of water. These low water contents are similar to those observed in spinel peridotites from other subduction zones and probably record both the low solubility of water in olivine at low pressure and dehydration during exhumation of the xenoliths. Water contents in orthopyroxene are highly variable (25-506 ppm H2O), probably recording spatially heterogeneous interaction with fluids or melts and compositional disequilibrium in the studied samples. Change in the dominant percolation mechanism from porous flow to fracturing suggests cooling, consistent with the low temperatures estimated from pyroxene thermometry (< 800-900 degrees C). The Avacha xenoliths therefore record pervasive deformation of a region of the mantle under asthenospheric conditions, followed by its accretion to the base of the lithosphere, probably as a result of cooling of the mantle wedge. Percolation of Si-rich fluids or hydrous melts is recorded at all stages; this probably enhanced diffusion and lowered deviatoric stresses during ductile deformation, but did not change the dominant slip direction in olivine from [100] to [001].
ISSN: 0022-3530

hal-00456053
https://hal.archives-ouvertes.fr/hal-00456053
DOI : 10.1093/petrology/egp085

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
1] Recent statistical analysis by Lallemand et al. (2008) of subduction zone parameters revealed that the back-arc deformation mode depends on the combination between the subducting (nu(sub)) and upper (nu(up)) plate velocities. No significant strain is recorded in the arc area if plate kinematics verifies nu(up) = 0.5 vsub - 2.3 (cm/a) in the HS3 reference frame. Arc spreading ( shortening) occurs if nu(up) is greater ( lower) than the preceding relationship. We test this statistical law with numerical models of subduction, by applying constant plate velocities far away from the subduction zone. The subducting lithosphere is free to deform at all depths. We quantify the force applied on the two converging plates to sustain constant surface velocities. The simulated rheology combined viscous (non-Newtonian) and brittle behaviors, and depends on water content. The influence of subduction rate vs is first studied for a fixed upper plate. After 950 km of convergence ( steady state slab pull), the transition from extensional to compressive stresses in the upper plate occurs for vs similar to 1.4 cm/a. The effect of upper plate velocity is then tested at constant subduction rate. Upper plate retreat ( advance) with respect to the trench increases extension ( compression) in the arc lithosphere and increases ( decreases) the subducting plate dip. Our modeling confirms the statistical kinematic relationship between vsub and nu(up) that describes the transition from extensional to compressive stresses in the arc lithosphere, even if the modeled law is shifted toward higher rates of upper plate retreat, using our set of physical parameters ( e. g., 100 km thick subducting oceanic plate) and short- term simulations. Our results make valid the choice of the HS3 reference frame for assessing plate velocity influence on arc tectonic regime. The subduction model suggests that friction along the interplate contact and the mantle Stokes reaction could be the two main forces competing against slab pull for upper mantle subductions. Besides, our simulations show that the arc deformation mode is strongly time dependent.
ISSN: 1525-2027

hal-00412328
https://hal.archives-ouvertes.fr/hal-00412328
https://hal.archives-ouvertes.fr/hal-00412328/document
https://hal.archives-ouvertes.fr/hal-00412328/file/arcayG32008.pdf
DOI : 10.1029/2007GC001875

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
TEM Study of Heavitree quartzite deformed at high temperatures and a pressure of 1.5 GPa with three different preparations: water-added, vacuum dried, and sodium doped show a wide range of dislocation microstructure. The vacuum dried sample has a very heterogeneous dislocation distribution varying from almost no dislocations to very high densities. Dislocation nucleation occurs by cross-slip mechanisms, such as Frank-Read sources and Orowan loops around hard inclusions. Shear bands develop in the basal plane composed of two closely spaced shear planes. Dislocations have straight segments and they are aligned along directions of dense packing, suggesting strong Peierls stress control due to the crystal structure. No voids, bubbles or dislocation walls where observed in the vacuum dried sample. The sodium-doped sample had a homogeneous high dislocation density. The water-added sample has a significantly lower, relatively uniform dislocation density. Bubbles associated with dislocations are seen in every grain. Dislocations were either present in loops around bubbles or as straight dislocations with small bubbles spaced along the dislocation line. Some of the long straight dislocations are aligned parallel to the c-axis. Sub-grains where very frequent, sometimes form cells of about 2 p,m in diameter with straight edges. Analysis of dislocations show 1/3 < a > and [c] dislocations in sub-grain walls and free 1/3 < a > dislocations on prism planes. There is clear evidence for dislocation climb with sub-grain walls, dislocation cells, dislocation junctions and dislocation debris of small loops. The major difference between vacuum dried and water-added samples are the homogeneity of the microstructure and evidence for climb in the water-added sample. Glide is clearly difficult, with a high Peierls stress in the vacuum dried sample as shown by areas of very low and very high dislocation density and the crystallographic control of dislocation line direction. The sodium-doped sample indicates that nucleation was easy by the high homogenous dislocation density, but no climb recovery has taken place. The density is high and the dislocations are strongly interacting causing tangles; no evidence for crystallographic control can be observed at these levels of strain. The activation energy for creep in Heavitree quartzite decreases with inferred water content of the specimens form 185 kJ mol(-1) for vacuum dried to 151 for 0.4 wt% water-added samples. Analysis of diffusion data for oxygen under hydrothermal conditions and inferred diffusion data for the hydrogarnet defect and dislocation velocity suggests activation energies for these processes are similar to the activation energy for the dislocation creep of Heavitree quartzite and other quartz aggregates. For data from the previously published experiments with the highest stress resolution there is a correlation between the A pre-factor in the power law creep equation and the activation energy for creep. It is speculated that the correlation may be due to variable hydrogarnet defect concentrations.
ISSN: 0031-9201

hal-00413112
https://hal.archives-ouvertes.fr/hal-00413112
DOI : 10.1016/j.pepi.2008.07.009

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
High sea surface temperature accompanied by high levels of solar irradiance is responsible for the disruption of the symbiosis between cnidarians and their symbiotic dinoflagellates from the genus Symbiodinium. This phenomenon, known as coral bleaching, is one of the major threats affecting coral reefs around the world. Because an important molecular trigger to bleaching appears related to the production of reactive oxygen species (ROS), it is critical to understand the function of the antioxidant network of Symbiodinium species. In this study we investigated the response of two Symbiodinium species, from contrasting environments, to a chemically induced oxidative stress. ROS produced during this oxidative burst reduced photosynthesis by 30 to 50% and significantly decreased the activity of superoxide dismutase. Lipid peroxidation levels and carotenoid concentrations, especially diatoxanthin, confirm that these molecules act as antioxidants and contribute to the stabilization of membrane lipids. The comparative analysis between the two Symbiodinium species allowed us to highlight that Symbiodinium sp. clade A temperate was more tolerant to oxidative stress than the tropical S. kawagutii clade F. These differences are very likely a consequence of adaptation to their natural environment, with the temperate species experiencing conditions of temperature and irradiance much more variable and extreme.
ISSN: 0140-7791

hal-01546161
https://hal.archives-ouvertes.fr/hal-01546161
DOI : 10.1111/pce.12825

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In petroleum industry, the difference between pore pressure (Pp) and minimum horizontal stress Sh (termed the seal or retention capacity) is of major consideration because it is often assumed to represent how close a system is to hydraulic failure and thus the maximum hydrocarbon column height that can be maintained. While Sh and Pp are often considered to be independent parameters, several studies in the last decade have demonstrated that Sh and Pp are in fact coupled. However, the nature of this coupling relationship remains poorly understood. In this paper, we explore the influences of the spatial pore pressure distribution on Sh/Pp coupling and then on failure pressure predictions and trap integrity evaluation. With analytical models, we predict the fluid pressure sustainable within a reservoir before failure of its overpressured shale cover. We verify our analytical predictions with experiments involving analogue materials and fluids. We show that hydraulic fracturing and seal breach occur for fluid pressure greater than it would be expected from conventional retention capacity. This can be explained by the impact of the fluid overpressure field in the overburden and the pressure diffusion around the reservoir on the principal stresses. We calculate that supralithostatic pressure could locally be reached in overpressured covers. We also define the retention capacity of a cover (RC) surrounding a fluid source or reservoir as the difference between the failure pressure and the fluid overpressure prevailing in shale at the same depth. In response to a localized fluid pressure rise, we show that the retention capacity does not only depend on the pore fluid overpressure of the overburden but also on the tensile strength of the cover, its Poisson's ratio, and the depth and width of the fluid source.
ISSN: 0264-8172

hal-00590497
https://hal.archives-ouvertes.fr/hal-00590497
DOI : 10.1016/j.marpetgeo.2010.08.007

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Comme dans d’autres régions du monde, la croissance démographique et l’accentuation des activités côtières au Canada entraînent une dégradation continue des écosystèmes et de la biodiversité. L’aménagement côtier contribue essentiellement à la vulnérabilité et à la détérioration des littoraux. Ce constat concerne le littoral acadien du Nouveau-Brunswick. Au-delà de ces pressions démographiques et de l’urbanisation sur les zones littorales, l'élévation du niveau marin et l'augmentation des températures (effets du changement et des variations climatiques) provoquent des impacts vérifiables : l’intensité des ondes de tempêtes, la dégradation des sols par l’érosion, etc. Ainsi, l’adaptation au changement climatique constitue un enjeu de taille pour la province du Nouveau-Brunswick. C’est pourquoi cet article propose d’étudier les impacts de ces changements auprès de deux régions côtières du littoral acadien et d’apprendre des expériences de chacun pour renforcer leur résilience. La recherche souhaite s’inscrire dans une nouvelle forme d’engagement communautaire qui prend en compte des aspects de la « gouvernance », de l’« aménagement du territoire » et de la « cohésion sociale ». L’article tente d’avoir une meilleure compréhension de l’enchâssement des aspects économiques et sociétaux dans les enjeux environnementaux.
As in other parts of the world, demographic growth and an increased use of coastal zones in Canada lead to a degradation of coastal ecosystems and a loss of biodiversity. Coastal development contributes in large part to the vulnerability and deterioration of coastal zones. This is very clearly seen in the case of the Acadian coast of New Brunswick. In addition to stresses from demographic growth and urbanization, the coastal zone is affected by sea level rise, temperature increases and other impacts of climate change such as increased climate variability, which lead to measurable effects such as an increase in storm intensity or increased coastal erosion. Thus, adaptation to climate change constitutes a major challenge for the province of New Brunswick. It is in this context that we propose to analyze the impacts of climate change in two sites on the Acadian coast and to profit from both experiences in order to increase the resilience of the communities through mutual learning. The research undertaken here aims at contributing to a new form of community engagement that takes “governance”, “land use planning” and “social cohesion” into account. The article aims at a better understanding of the interplay of social and economic aspects in this environmental problem.
Canada
Nouveau-Brunswick

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.6970
http://journals.openedition.org/etudescaribeennes/6970

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A large sand injectite network is very well exposed in the area of Bevons, Southeast France. The associated sandstone turbiditic channel–fill and the host marls are the Aptian–Albian rocks of the Vocontian Basin. The sand injection network is composed of dykes, sills and sedimentary laccoliths ranging in thickness from mm to pluri–m. The dykes and sills have vertical and horizontal lengths of up to and over 100 m and 1 km, respectively. Outcrop observations show that the architecture and morphology of the sand injectites in the marls is governed by the local stress field during injection, pre–existing faults, the host–rock lithology, compaction, and distance to the potential sand source(s). The main set of dykes is oriented N50–60° perpendicular to the minimum compressive stress σ3 during sand injection. Two other sets of dykes are intruded along pre–existing syn–sedimentary faults oriented N140–150° (set 2) and N90° (set 3) during the Apto–Cenomanian interval. Sills and dykes thin laterally away from their potential sand sources and thin laterally away from them. The vertical thickness variations of the dykes and wings are more complex, as thinning away from the sand sources is often compensated by thickening toward the palaeo–surface. Based on field observations and measurements, we characterized the 3D architecture of the sand injectites and showed that the injectites probably formed due to a forceful injection from an overpressured sand body sealed by low–permeability lithologies.
ISSN: 0191-8141

hal-01243488
https://hal.archives-ouvertes.fr/hal-01243488
DOI : 10.1016/j.jsg.2015.07.001

Éditeur(s) : HAL CCSD Oxford University Press (OUP): Policy P - Oxford Open Option A Oxford University Press (OUP)
Résumé : International audience
The Pyrenean mountain range is a slowly deforming belt with continuous and moderate seismic activity. To quantify its deformation field, we present the velocity field estimated from a GPS survey of the Pyrenees spanning 18 yr. The PotSis and ResPyr networks, including a total of 85 GPS sites, were installed and first measured in 1992 and 1995–1997, respectively, and remeasured in 2008 and 2010. We obtain a deformation field with velocities less than 1 mm yr−1 across the range. The estimated velocities for individual stations do not differ significantly from zero with 95 per cent confidence. Even so, we estimate a maximum extensional horizontal strain rate of 2.0 ± 1.7 nanostrain per year in a N–S direction in the western part of the range. We do not interpret the vertical displacements due to their large uncertainties. In order to compare the horizontal strain rates with the seismic activity, we analyse a set of 194 focal mechanisms using three methods: (i) the ‘r’ factor relating their P and T axes, (ii) the stress tensors obtained by fault slip inversion and (iii) the strain-rate tensors. Stress and strain-rate tensors are estimated for: (i) the whole data set, (ii) the eastern and western parts of the range separately, and (iii) eight zones, which are defined based on the seismicity and the tectonic patterns of the Pyrenees. Each of these analyses reveals a lateral variation of the deformation style from compression and extension in the east to extension and strike-slip in the west of the range. Although the horizontal components of the strain-rate tensors estimated from the seismic data are slightly smaller in magnitude than those computed from the GPS velocity field, they are consistent within the 2σ uncertainties. Furthermore, the orientations of their principal axes agree with the mapped active faults.
ISSN: 0956-540X

hal-01171752
https://hal.archives-ouvertes.fr/hal-01171752
DOI : 10.1093/gji/ggv052

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This study analyses the interactions between deformation and reactive fluid and melt percolation, and their effects on sub-arc mantle seismic properties based on microstructural observations on mantle xenoliths extracted by the Tubaf and Edison seamounts close to the Lihir Island, in the Papua New Guinea archipelago. These xenoliths sample an oceanic lithosphere, which has experienced high-temperature deformation in the presence of fluids or melts. This was followed by metasomatism under static conditions. Syn-kinematic percolation of reactive Si-rich melts or fluids in peridotites has produced pyroxene-enrichment, grain size reduction, and dispersion of olivine crystal preferred orientation (CPO). Fourier transform infrared spectroscopy analyses show that olivine has very low water contents (1-4 wt. ppm H2O), similar to spinel peridotites from other subduction zones. These low values may record both low water solubility in olivine at low pressure and dehydration during transport and exhumation. Water contents in pyroxenes are highly variable and likely result from spatially heterogeneous melt or fluid percolation. Analysis of olivine CPO indicates dominant activation of both (010)[100] and (001)[100] slip systems, which are characteristic of deformation under high temperature, low stress, low pressure and low to moderate hydrous conditions. Fast S-wave polarization and P- and Rayleigh propagation directions are thus parallel to the mantle flow direction. The pyroxene enrichment by melt-rock reactions is accompanied by dispersion of olivine CPO and induces a significant decrease of the maximum S-wave and P-wave anisotropy in the peridotites. The calculated seismic properties also show that the lowest Vp/Vs ratios (< 1.7) mapped in fore-arc mantle may only be explained by taking in consideration the CPO-induced elastic anisotropy of the peridotites.
ISSN: 0040-1951

hal-00950058
https://hal.archives-ouvertes.fr/hal-00950058
DOI : 10.1016/j.tecto.2013.09.024

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The mycotoxin alternariol (AOH), a frequent contaminant in fruit and grain, is known to induce cellular stress responses such as reactive oxygen production, DNA damage and cell cycle arrest. Cellular stress is often connected to autophagy, and we employed the RAW264.7 macrophage model to test the hypothesis that AOH induces autophagy. Indeed, AOH treatment led to a massive increase in acidic vacuoles often observed upon autophagy induction. Moreover, expression of the autophagy marker LC3 was markedly increased and there was a strong accumulation of LC3-positive puncta. Increased autophagic activity was verified biochemically by measuring the degradation rate of long-lived proteins. Furthermore, AOH induced expression of Sestrin2 and phosphorylation of AMPK as well as reduced phosphorylation of mTOR and S6 kinase, common mediators of signaling pathways involved in autophagy. Transmission electron microscopy analyzes of AOH treated cells not only clearly displayed structures associated with autophagy such as autophagosomes and autolysosomes, but also the appearance of lamellar bodies. Prolonged AOH treatment resulted in changed cell morphology from round into more star-shaped as well as increased β-galactosidase activity. This suggests that the cells eventually entered senescence. In conclusion, our data identify here AOH as an inducer of both autophagy and senescence. These effects are suggested to be to be linked to AOH-induced DSB (via a reported effect on topoisomerase activity), resulting in an activation of p53 and the Sestrin2-AMPK-mTOR-S6K signaling pathway.
ISSN: 0300-483X

hal-01117627
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01117627
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01117627/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01117627/file/Autophagy%20and%20senescence_accepted.pdf
PUBMED : 25456271