Éditeur(s) : HAL CCSD Elsevier
Résumé : The dense hydrous magnesium silicate called the D phase is the most likely candidate to recycle hydrogen into the lower mantle in subduction zones. As seismology represents the preferred method to detect this mineral in subduction zones, the single crystal elastic tensor has been calculated using first principle methods. A triple cell (View the MathML source) was used to account for an ordered ideal composition of the D phase to lower mantle pressures. The elastic tensor of the mineral at ambient conditions is predicted to be C11 = 387.7, C33 = 287.7, C44 = 100.4, C12 = 108.0, C13 = 51.1, C14 = − 14.6 in GPa with bulk modulus at zero pressure Ko = 163 GPa and a statistical error of about 4.0 GPa for all constants. The pressure derivatives of the elastic constants have been determined to pressure of 80 GPa. Our tensor correctly predicts the published experimental measurements of linear compressibility along the a- and c-axes, the logarithmic pressure derivative of the c/a axial ratio and bulk modulus at zero pressure. It contradicts the experimentally measured elastic tensor reported by (Liu, L.-G., Okamoto, K., Yang, Y.-J., Chen, C.-C., Lin, C.-C., 2004. Elasticity of single-crystal phase D (a dense hydrous magnesium silicate) by Brillouin spectroscopy. Solid State Commun. 132, 517–520), which fails to reproduce the experimental compressibility data. Using the elastic constants and density predicted to 85 GPa, the seismic anisotropy of P- and S-waves has been calculated as a function of pressure. The single crystal has high P-wave velocities and shear wave splitting in the basal plane below 20 GPa. At high pressures, the maximum P-wave velocities have threefold symmetry normal to a-axes in the basal plane, whereas the maximum shear wave splitting is parallel to a-axes with twofold symmetry. The D phase has high Vp and Vs anisotropy at ambient pressure, 17.6% for Vp and 19.9% for Vs. The Vp anisotropy decreases with increasing pressure to about 30 GPa, while it remains constant at 8% from 30 to 85 GPa. The Vs anisotropy decreases to 17% at 20 GPa and then increases to 22% at 85 GPa. The isotropic velocity ratios of S to P (Rs/p), bulk sound to S (Rphi/s) and density to S (Rρ/s) are calculated as a function of pressure. The Rs/p shows very little variation with pressure with low value of 0.6, whereas both Rphi/s and Rρ/s increase with pressure to peak values of 2.8 and 2.0 respectively at about 60 GPa. The presence of the D phase in subducted horizontal ‘stagnant' plates in the circum Pacific could contribute to a number of seismic observations, such as the observed velocity heterogeneity at depths between 500 and 1000 km and the fast S-waves travelling horizontally with horizontal polarization in this depth range. Further the lower density of the D phase compared with anhydrous minerals could influence buoyancy of the hydrated ‘stagnant' slabs. The transformation of the D phase to perovskite plus ferripericlase during thermal annealing may be responsible for horizontal slab seismogenesis.
ISSN: 0012-821X

hal-00406379
https://hal.archives-ouvertes.fr/hal-00406379
DOI : 10.1016/j.epsl.2007.04.053

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : The analysis of fine-scale spatial genetic structure (FSGS) within populations can provide insights into eco-evolutionary processes. Restricted dispersal and locally occurring genetic drift are the primary causes for FSGS at equilibrium, as described in the isolation by distance (IBD) model. Beyond IBD expectations, spatial, environmental or historical factors can affect FSGS. We examined FSGS in seven African and Neotropical populations of the late-successional rain forest tree Symphonia globulifera L. f. (Clusiaceae) to discriminate the influence of drift-dispersal vs. landscape/ecological features and historical processes on FSGS. We used spatial principal component analysis and Bayesian clustering to assess spatial genetic heterogeneity at SSRs and examined its association with plastid DNA and habitat features. African populations (from Cameroon and São Tomé) displayed a stronger FSGS than Neotropical populations at both marker types (mean Sp = 0.025 vs. Sp = 0.008 at SSRs) and had a stronger spatial genetic heterogeneity. All three African populations occurred in pronounced altitudinal gradients, possibly restricting animal-mediated seed dispersal. Cyto-nuclear disequilibria in Cameroonian populations also suggested a legacy of biogeographic history to explain these genetic patterns. Conversely, Neotropical populations exhibited a weaker FSGS, which may reflect more efficient wide-ranging seed dispersal by Neotropical bats and other dispersers. The population from French Guiana displayed an association of plastid haplotypes with two morphotypes characterized by differential habitat preferences. Our results highlight the importance of the microenvironment for eco-evolutionary processes within persistent tropical tree populations.
ISSN: 1932-6203

hal-01608324
https://hal.archives-ouvertes.fr/hal-01608324
DOI : 10.1371/journal.pone.0182515
PRODINRA : 403154
PUBMED : 28771629

Éditeur(s) : HAL CCSD
Résumé : International audience
We examined fine-scale heterogeneity of environmental conditions in a primary rain forest in French Guiana to describe variation in microhabitats that plants may experience during establishment. We characterized both the range as well as the spatial structuring of 11 environmental factors important for seedling establishment in six hexagonal sampling grids, one each in gap and understory sites at three points representing the predominant geomorphic units in this primary forest. Each grid contained 37 sampling points separated by 31 cm-20 m. Monte-Carlo tests of semivariograms against complete spatial randomness indicated that for many variables in all six sampling grids, spatial dependence did not exceed 1 m. A principal component analysis of all sampling points revealed a lack of spatial microhabitat structure, rather than homogeneous patches associated with canopy structure or geomorphology. Our results suggest that ample fine-scale spatial heterogeneity exists to support the coexistence of plant species with differential abiotic requirements for regeneration.
Botropica

halsde-00520179
https://hal.archives-ouvertes.fr/halsde-00520179
DOI : 10.1111/j.1744-7429.2009.00620.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In East Asia, widespread extensional sedimentary basins together with the close association of Metamorphic Core Complexes and magmatism are prominent features of the large-scale wide rift system developed during late Mesozoic times. This region thus appears as a proper place to study continental extension as well as questions about the link between continental extension and magmatism. This paper primarily provides pioneer exhumation time-constraints on the Linglong MCC (Jiaodong Peninsula) including cooling and deformation ages. MCC cooling at mid-crustal levels occurred at ca. 143 Ma. Besides, last ductile deformation occurred at ca. 134 Ma while final exhumation stages, under brittle 2 conditions, occurred as late as ca. 128 Ma. Continuous crustal stretching were then recorded by the emplacement of a synkinematic pluton in the upper crust at ca. 128 Ma that cooled fast below an intracrustal shear zone crossing the ductile-brittle transition at ca. 123 Ma. The ca. 120-118 Ma age cluster is ascribed to the fast cooling of undeformed plutons marking the end of extension that lasted, in the area, over a minimum period of ca. 30 My. Combining other MCC exhumation constraints and the onset of subsidence in the sedimentary basins, total duration of late Mesozoic extension in East Asia could be estimated at ca. 60 My, related with a rather long process for extension from 160 to at least 100 Ma. East Asian continental extension is heterogeneously distributed in space and time as revealed by fundamental differences between two end-member classes of migmatite-cored MCC already described in other wide rift systems. Extension seems to have first favoured partial melting which subsequently, in turn, maintained continental extension.
ISSN: 1342-937X

insu-00752551
https://hal-insu.archives-ouvertes.fr/insu-00752551
https://hal-insu.archives-ouvertes.fr/insu-00752551/document
https://hal-insu.archives-ouvertes.fr/insu-00752551/file/Charles_et_al_Gondwana_Research_2012.pdf
DOI : 10.1016/j.gr.2012.10.011

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
Analysis of short-term deformation along the southern part of Dead Sea Fault (DSF) provides a systematic view of kinematics this part of the continental transform. The southern DSF consists of two principal segments: the Wadi Araba and Jordan Valley faults. In addition to other regional continuous GPS data, this study uses new data from 25 survey sites and 4 continuous GPS stations in Jordan for improved near-field observations. Resulting velocities are reported with 1-sigma uncertainties ranging from 0.4-1.0 mm/yr. Application of elastic dislocation models yields estimates of slip rates for Wadi Araba and Jordan Valley faults are 4.9 +/- 0.4 mm/yr and 4.7 +/- 0.4 mm/yr, respectively. Modeling also suggests different depths of effective fault locking with 15 +/- 5 km and 8 +/- 5 km for the Wadi Araba and Jordan Valley faults, respectively. These slip rates are generally consistent with the upper end of the range of slip rates estimated from late Quaternary geology. Spatial variations in effective fault locking generally correspond with a heterogeneous mantle lithosphere. A similar observation can be observed along the southern San Andreas Fault, and this may reflect the influence of heterogeneity in the uppermost mantle on crustal faulting processes.
ISSN: 1525-2027

hal-00689031
https://hal.archives-ouvertes.fr/hal-00689031
DOI : 10.1029/2011GC003736

Éditeur(s) : HAL CCSD
Résumé : International audience
The complexity of the Lesser Antilles vegetation must be linked to the variety of topographic features that influence the structure of some climatic parameters, particularly the rainfall. The above mentioned environmental factors influence a plurality of biotopes colonized by specific phytocenoses. Using survey transects of different minimal areas, we highlighted the specific, biocenotic, structural and architectural heterogeneity of the survey stations. This spatio-temporal differentiation of plant groupings is strongly guided by the activities of the successive human societies. These elements show that the anthropized vegetation of the Lesser Antilles represents a true laboratory for the study of plant succession using the synchronic approach.
ISSN: 2320-5407

hal-01376445
https://hal.univ-antilles.fr/hal-01376445
DOI : 10.21474/IJAR01/1322

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : We examined tree-soil habitat associations in lowland forest communities at Paracou, French Guiana. We analyzed a large dataset assembling six permanent plots totaling 37.5 ha, in which extensive LIDAR-derived topographical data and soil chemical and physical data have been integrated with precise botanical determinations. Map of relative elevation from the nearest stream summarized both soil fertility and hydromorphic characteristics, with seasonally inundated bottomlands having higher soil phosphate content and base saturation, and plateaus having higher soil carbon, nitrogen and aluminum contents. We employed a statistical test of correlations between tree species density and environmental maps, by generating Monte Carlo simulations of random raster images that preserve autocorrelation of the original maps. Nearly three fourths of the 94 taxa with at least one stem per ha showed a significant correlation between tree density and relative elevation, revealing contrasted species-habitat associations in term of abundance, with seasonally inundated bottomlands (24.5% of species) and well-drained plateaus (48.9% of species). We also observed species preferences for environments with or without steep slopes (13.8% and 10.6%, respectively). We observed that closely-related species were frequently associated with different soil habitats in this region (70% of the 14 genera with congeneric species that have a significant association test) suggesting species-habitat associations have arisen multiple times in this tree community. We also tested if species with similar habitat preferences shared functional strategies. We found that seasonally inundated forest specialists tended to have smaller stature (maximum diameter) than species found on plateaus. Our results underline the importance of tree-soil habitat associations in structuring diverse communities at fine spatial scales and suggest that additional studies are needed to disentangle community assembly mechanisms related to dispersal limitation, biotic interactions and environmental filtering from species-habitat associations. Moreover, they provide a framework to generalize across tropical forest sites.
ISSN: 1932-6203

hal-01260289
https://hal.archives-ouvertes.fr/hal-01260289
PRODINRA : 342930
DOI : 10.1371/journal.pone.0141488

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Resolving the early diversification of animal lineages has proven difficult, even using genome-scale datasets. Several phylogenomic studies have supported the classical scenario in which sponges (Porifera) are the sister group to all other animals (''Porifera-sister''3 hypothesis), consistent with a single origin of the gut, nerve cells, and muscle cells in the stem lineage of eumetazoans (bilaterians + ctenophores + cnidarians). In contrast, several other studies have recovered an alternative topology in which ctenophores are the sister group to all other animals (including sponges). The ``Ctenophora-sister'' hypothesis implies that eumetazoan-specific traits, such as neurons and muscle cells, either evolved once along the metazoan stem lineage and were then lost in sponges and placozoans or evolved at least twice independently in Ctenophora and in Cnidaria + Bilateria. Here, we report on our reconstruction of deep metazoan relationships using a 1,719-gene dataset with dense taxonomic sampling of non-bilaterian animals that was assembled using a semi-automated procedure, designed to reduce known error sources. Our dataset outperforms previous metazoan gene superalignments in terms of data quality and quantity. Analyses with a best-fitting site-heterogeneous evolutionary model provide strong statistical support for placing sponges as the sister-group to all other metazoans, with ctenophores emerging as the second-earliest branching animal lineage. Only those methodological settings that exacerbated long-branch attraction artifacts yielded Ctenophora-sister. These results show that methodological issues must be carefully addressed to tackle difficult phylogenetic questions and pave the road to a better understanding of how fundamental features of animal body plans have emerged.
ISSN: 0960-9822

hal-01681528
https://hal.archives-ouvertes.fr/hal-01681528
DOI : 10.1016/j.cub.2017.02.031

Éditeur(s) : HAL CCSD Mineralogical Society of America
Résumé : International audience
In situ mineralization of CO2 in ultramafic rock-hosted aquifers is one of the promising solutions for decreasing CO2 concentrations in the atmosphere. Naturally altered ultramafic rocks suggest that carbonation processes are controlled by local heterogeneities in the structure of the rock and fluid transport at the water-rock interfaces. We studied the role of rock crystallographic anisotropy relative to the global fluid flow direction on the mineralization of CO2 by means of electron microscope analyses from the macro- to the micrometer scale (EBSD-FIB). The sample used for the measurements was a hot pressed olivine core percolated by water enriched in CO2 (pCO2 = 10 MPa) at 180 °C. During the percolation experiment, olivine was dissolved and two types of carbonates, dolomite, and magnesite, were precipitated on olivine surfaces. The results showed that the dissolution of olivine is controlled by its crystallographic properties as shown by the development of etch-pits only on the (010)ol planes and with elongated shapes parallel to the [010]ol axes. In contrast, the precipitation of carbonates is governed by hydrodynamic properties. Carbonates are heterogeneously distributed in the percolated rock. They are mainly located along the moderate (for dolomite) and the minor (for magnesite) flow paths, both oriented parallel to the principal fluid flow direction, which allow carbonates to be supplied with divalent cations (e.g., Ca2+, Mg2+, and Fe2+). In these flow paths, carbonate growth is systematically oriented normal to the flow that facilitates the development of chemical gradients with cationic supersaturation conditions for carbonate precipitation near the walls.In natural systems, the (010)ol planes are parallel to the Moho and the (100)ol planes are vertical; our study suggests that flow of CO2-rich fluids will induce precipitation of carbonates localized along, and preferentially clogging, vertical flow paths while favoring olivine dissolution along horizontal fluid pathways. This dual control of structure and fluid flow on carbonation mechanisms could be an important parameter allowing sustainable CO2 storage in peridotites, while limiting the risks of leakage toward the surface.
ISSN: 0003-004X

hal-01143393
https://hal.archives-ouvertes.fr/hal-01143393
DOI : 10.2138/am-2015-4913

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
White-sand forests are thought to host many ectomycorrhizal fungi, as demonstrated by the numerous fruiting body collections made by Rolf Singer in the lower Rio Negro in the late 1970s. Despite recognition of the importance of ectomycorrhizal fungi in white-sand forests, there has not yet been a systematic examination of diversity and taxonomic composition across white-sand forests, or more widely across lowland Amazonian forests. In an effort to broaden our view of ectomycorrhizal fungal diversity and distribution on white-sand forests, we collected ectomycorrhizal fruiting bodies in 10 plots of white-sand forests in Brazil and French Guiana between 2012 and 2014. We collected 221 specimens and 62 morphospecies, from the 10 plots, confirming that all studied white-sand forests host ectomycorrhizal fungi. Additionally, we searched for taxa associated with white sands among specimens deposited in Brazilian herbaria. We report 1006 unique ectomycorrhizal specimen records in 18 Brazilian herbaria, of which 137 specimens and 64 species are reported from white-sand forests, mainly in the state of Amazonas, Brazil. Russulaceae and Amanitaceae were frequent in all habitats, and Cortinarius were more frequent on white sands. Our results highlight the high diversity and heterogeneity of ectomycorrhizal communities on white-sand forests, and the wide distribution of ectomycorrhizal fungi throughout Brazil, irrespective of soil type.
Florestas em solos arenosos são consideradas como hospedeiras de muitos fungos ectomicorrízicos (EM), como demonstrado pelas numerosas coletas feitas por Rolf Singer na região do Rio Negro, Amazonas, no final dos anos 70. Apesar do reconhecimento da importância dos fungos ectomicorrízicos em florestas em solos arenosos, não houve nenhum estudo sistemático da diversidade e da composição taxonômica nas florestas em solos arenosos ou mesmo mais amplamente nas terras baixas da Floresta Amazônica. Para ter uma visão global da diversidade e da distribuição de fungos EM em florestas em solos arenosos, foram coletados basidiomas desses fungos em 10 parcelas de florestas em solos arenosos no Brasil e na Guiana Francesa entre 2012 e 2014. Além disso, uma busca foi feita por espécimes depositados em herbários brasileiros que tinham a informação de serem coletas feitas em solo arenoso. Nas 10 parcelas amostradas foram coletados 221 espécimes e 62 morfoespécies, o que confirma que todas as florestas em solos arenosos hospedam fungos EM. Recuperamos 1006 espécimes registrados em 18 herbários brasileiros, dos quais 137 espécimes e 52 espécies são registros de florestas em solos arenosos principalmente no estado do Amazonas, Brasil. Russulaceae e Amanitaceae foram frequentes em todos os habitats e Cortinarius foi o táxon mais frequente em solo arenoso. Os resultados apresentados enfatizam a alta diversidade e heterogeneidade das comunidades de EM em florestas em solos arenosos, assim como a ampla distribuição de fungos em todo o Brasil, não exclusivamente em florestas em solos arenosos.
ISSN: 0006-3606

hal-01278423
https://hal-sde.archives-ouvertes.fr/hal-01278423
DOI : 10.1111/btp.12297

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Our knowledge and understanding of the 3-D lithospheric structure of the Himalayas and the Tibetan Plateau is still challenging although numerous geophysical studies have been performed in the region. The GOCE satellite mission has the ambitious goal of mapping Earth's gravity field with unprecedented precision (i.e. an accuracy of 1-2 mGal for a spatial resolution of 100 km) to observe the lithosphere and upper-mantle structure. Consequently, it gives new insights in the lithospheric structure beneath the Himalayas and the Tibetan Plateau. Indeed, the GOCE gravity data now allow us to develop a new strategy for joint gravimetry-seismology inversion. Combined with teleseismic data over a large region in a joint inversion scheme, they will lead to lithospheric velocity-density models constrained in two complementary ways. We apply this joint inversion scheme to the Hi-CLIMB (Himalayan-Tibetan Continental Lithosphere during Mountain Building) seismological network which was deployed in South Tibet and the Himalayas for a 3-yr period. The large size of the network, the high quality of the seismological data and the new GOCE gravity data set allow us to image the entire lithosphere of this active area in an innovative way. We image 3-D low velocity and density structures in the middle crust that fit the location of discontinuous low S-velocity zones revealed by receiver functions in previous geophysical studies. In the deeper parts of our velocity model we image a positive anomaly interpreted to be the heterogenous Indian lithosphere vertically descending beneath the centre of the Tibetan Plateau.
ISSN: 0956-540X

hal-00858024
https://hal.archives-ouvertes.fr/hal-00858024
DOI : 10.1093/gji/ggs110

Éditeur(s) : HAL CCSD
Résumé : The forests of French Guiana occupy a central part of the region’s potential resource base, but as yet remain almost completely unexploited. This stems from the forestry industry struggling to valorize wood stocks of a high diversity with an extremely heterogeneous distribution. Indeed, identifying essences for future propagation is an issue of both environmental and socio-economic importance for the region. Bagassa guianensis Aubl. and Cordia alliodora (Ruiz & Pav.) Oken. go against conventional models, in that they display the life history characteristics of rapid growth and wood of high quality, and thus are species of high potential for future plantations. Firstly, our study of growth characteristics reveals a defined strategy half way between long-lived species and pioneer species. It is the variability of basic density of wood which is a key trait allowing for such a development, favoring rapid growth in initial years whilst allowing for tree longevity. Secondly, the analysis of a range of wood properties (shrinkage, modulus of elasticity, durability) in relation to tree growth confirms the technologic quality of the two species. It also enables the emergence of new results like the effect of extractives on wood stability, the control of growth as a result of basic density variation, the evolution of leaf traits throughout tree development or the improvement of trunk maintenance thanks to interlocked grain. The knowledge gained in relation to the developmental traits of these two species, and to the quality of their wood allows for the elaboration of plantation projects and what will be required for their success. The results of this study can orientate future studies on novel species for commercialization in French Guiana.
La ressource forestière en Guyane occupe une place maîtresse au sein de la région et est encore majoritairement préservée, mais la filière bois parvient difficilement à valoriser la biodiversité locale en raison de l’hétérogénéité de la ressource. Identifier les essences à planter demain représente aujourd’hui un enjeu à la fois environnemental, économique et social pour la Guyane. Bagassa guianensis Aubl. et Cordia alliodora (Ruiz & Pav.) Oken. vont à l’encontre des modèles usuels en associant vitesse de croissance et qualité du bois et sont identifiées comme prometteuses pour la plantation. Dans un premier temps, l’étude de la dynamique de croissance des deux espèces révèle un modèle écologique singulier, à la fois pionnières et longévives. La variabilité de l’infradensité dans l’arbre est l’élément clé qui permet un tel développement, favorisant une croissance rapide dans les premières années tout en assurant la longévité de l’individu. Dans une seconde partie, l’analyse d’un large panel de propriétés du bois (retrait, module, durabilité) en lien avec le développement de l’arbre confirme les qualités technologiques des deux espèces et permet l’émergence de résultats novateurs tels que le rôle des extractibles sur le retrait, le contrôle de la croissance grâce aux variations d’infradensité, l’évolution des traits foliaires au cours de l’ontogénie ou encore la mise en place de contrefil dans l’arbre pour assurer son maintien. La connaissance acquise vis-à-vis du mode de développement de ces deux espèces et des facteurs influençant la qualité de leur bois permet aujourd’hui de définir avec plus de précision le cadre d’un projet de plantation et les conditions de son succès. Les résultats de cette étude permettent finalement d’orienter la recherche de nouvelles espèces d’avenir pour la plantation en Guyane.
https://tel.archives-ouvertes.fr/tel-01338281

tel-01338281
https://tel.archives-ouvertes.fr/tel-01338281
https://tel.archives-ouvertes.fr/tel-01338281/document
https://tel.archives-ouvertes.fr/tel-01338281/file/Th%C3%A8se%20Julie%20Bossu.pdf

Éditeur(s) : HAL CCSD Royal Society of Chemistry
Résumé : International audience
Owing to the electron donor-acceptor properties of GO, the active sites (≡Fe2+) of Fe3O4 are not oxidised (≡Fe3+) in the heterogeneous Fenton-like reaction. GO plays a sacrificial role via the oxidation of (C=C) carbon domains, and transferring electrons to Fe3O4. Therefore, GO-Fe3O4 confers superior catalytic efficiency, recyclability and longevity, otherwise not available in Fe3O4. © The Royal Society of Chemistry 2015.
ISSN: 1359-7345

hal-01683211
https://hal.univ-antilles.fr/hal-01683211
DOI : 10.1039/c5cc02292d

Éditeur(s) : HAL CCSD Instituto Oswaldo Cruz, Ministério da Saúde
Résumé : International audience
Leishmania are protozoan parasites that show remarkable diversity, as revealed by the various clinical forms of leishmaniasis, which can range from mild skin lesions to severe metastatic cutaneous/mucosal lesions. The exact nature and extent of Leishmania phenotypic diversity in establishing infection is not fully understood. In order to try to understand some aspects of this diversity, we subcutaneously infected BALB/c mice with first and second generation subclones of a L. amazonensis strain isolated from a patient (BA125) and examined in vivo lesion growth rate and antimony susceptibility. In vivo fast-, medium- and slow-growing subclones were obtained; moreover, fast-growing subclones could generate slow-growing subclones and inversely, revealing the continuous generation of diversity after passage into mice. No antimony-resistant subclone appeared, probably a rare occurrence. By tagging subclone cells with a L. amazonensis genomic cosmid library, we found that only a very small number of founding cells could produce lesions. Leishmania clones transfected with in vivo selected individual cosmids were also diverse in terms of lesion growth rate, revealing the cosmid-independent intrinsic characteristics of each clone. Our results suggest that only a few of the infecting parasites are able to grow and produce lesions; later, within the cell mixture of each lesion, there coexist several parasite populations with different potentialities to grow lesions during the next infection round. This may reflect a sort of programmed heterogeneity of individual parasites, favoring the survival of some individuals in various environmental conditions.
ISSN: 0074-0276

hal-01489007
https://hal-univ-perp.archives-ouvertes.fr/hal-01489007

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Highly siderophile elements (Platinum-group elements, Au and Re) are currently assumed to reside inside base metal sulfides (BMS) in the convecting upper mantle. However, fertile lherzolites sampled by Pyrenean orogenic peridotite massifs are unexpectedly rich in 0.5-3 mu m large micronuggets of platinum-group minerals (PGM). Among those, sulfides from the laurite-erlichmanite series (Ru, Os(Ir)S(As)2), Pt-Ir-Os alloys and Pt-Pd-Te-Bi phases (moncheite-merenskyite) are predominant. Not only the BMS phases but also the PGM micronuggets must be taken into account in calculation of the PGE budget of orogenic fertile lherzolites. Laurite is a good candidate for equilibrating the whole-rock budget of Os, it and Ru while accounting for supra-chondritic Ru/Ir-N. Textural relationships between PGMs and BMS highlight heterogeneous mixing between refractory PGMs (laurite/Pt-Ir-Os alloys) inherited from ancient refractory lithospheric mantle and late-magmatic metasomatic sulfides precipitated from tholeiitic melts. "Low-temperature" PGMs, especially Pt-Pd bismuthotellurides should be added to the list of mineral indicators of lithosphere refertilization process. Now disseminated within fertile lherzolites, "lithospheric" PGMs likely account for local preservation of ancient Os model ages (up to 2 Ga) detected in BMS by in-situ isotopic analyses. These PGMs also question the reliability of orogenic lherzolites for estimating the PGE signature of the Primitive Silicate Earth.
ISSN: 0012-821X

hal-00486109
https://hal.archives-ouvertes.fr/hal-00486109
DOI : 10.1016/j.epsl.2009.11.017

Éditeur(s) : HAL CCSD Elsevier
Résumé :  
Classifying species by shared life-history traits is important if common ecological response groups are to be identified among different species. We investigated how habitat area, local and regional factors shape plant communities in small isolated closed depressions, and how the species richness is related to the interplay between environmental factors and specific life-history trait combinations. In Central-Western Europe, 169 closed depressions were completely Surveyed for plant presence in two highly contrasted landscapes (forested and open landscapes). All species were clustered into 9 Emergent Groups based oil 10 life-history traits related to plant dispersal, establishment and persistence. Habitat areas were related to species presence using logistic regressions. Most Emergent Groups were more area-dependent in open than in forested landscapes, owing to heterogeneous light levels in forest weakening the species-area relationship. In open landscapes, Floating Hydrophytes were severely underrepresented in very small depressions, owing to the absence of waterfowl poulation. Local environmental and regional factors were related to species richness using Generalized Linear Models. In open landscapes, local environmental factors such as water conductivity or soil productivity are respectively the main predictors. In forested landscapes, the abundance of most Emergent Groups Was better predicted by regional factors, i.e., habitat connectivity and distance to the forest edge. Forested landscapes strongly impeded the closed depressions' colonization by the less mobile Emergent Groups Such as Large-seeded Perennials.
ISSN: 1146-609X

hal-01032144
https://hal.archives-ouvertes.fr/hal-01032144
DOI : 10.1016/j.actao.2009.02.002

Éditeur(s) : HAL CCSD
Résumé : International audience
The challenge is to implement research that can estimate the consequences ofclimate changes in terms of impact on terrestrial environments and resources.Emphasis should be placed on regions dependent on natural resources and forwhich demographic pressure is strong. Simulations obtained from climate modelprojections (using different Representative Concentration Pathways (RCPs))predict that the Mediterranean basin and its southern periphery are particularlyvulnerable to water resources and environmental impact (IPCC, AR5, 2013).An annual rainfall decrease by 30% is found for the projection period 2070-2099(IPCC, AR5, 2013) associated with a decrease in water resources by 30 to 50%(Milano, 2012). In addition, several studies using regional atmospheric modelsindicate an increase in the precipitation inter-annual variability with extremeevents and a spatial heterogeneous signature, superimposed on a decrease in thetotal precipitation amount (Giorgi and Lionello, 2008; Raible et al. 2010).Currently, regional climate projections are highly sensitive to the climate modelused. In particular, spatial resolution as well as local climate conditions seemto impact significantly on the simulations (Jacob et al. 2014).The Mediterranean region, at the interface between arid and temperate climateswith several mountainous areas, is a complex climate system affected by theinteractions between mid-latitude and sub-tropical processes. In this context,Morocco, located at the transition between a temperate climate to the North anda tropical climate to the south constitutes a key area for an impact and sensitivitystudy to global climate changes. The climate is influenced by the Atlantic Ocean,the Mediterranean Sea and the Sahara, together with a very steep orography inthe Atlas region. The precipitation distribution is therefore characterised by greatspatial variability, and exhibits a marked seasonality, a strong inter-annualvariability (Ouda et al. 2005) and in general a pronounced gradient from northto south and west to east. At a broader scale, Morocco is located on the subtropicalsubsidence path and between the Acores High and the Saharan Low (Agoussine,2003). Several studies have also identified strong links with inter-annualprecipitation variability and NAO index (Knippertz, 2003) as well as remoteclimate modes (Esper et al. 2007).Continental climate variability at a local/regional scale, if it is to be integratedin climate predictions, needs to be supported by long-term observation.Meteorological stations in Morocco provide climatic data mainly for the last40 years with only a few stations located in the mountainous region (Tramblayet al. 2012; 2013; Driouech et al. 2010). This climate database is also supportedby the IAEA network providing stations for which isotope tracers have beenapplied to daily/monthly rain and water vapour samples over 2 to 3 years between2000 and 2004. Besides the poor coverage of instrumented areas, lacustrinesystems can provide a climatic data set that offers access to short and long-termtime series of climate parameters when knowledge of modern lake water balanceis combined with lacustrine sedimentary-climate records. Lake sediment recordsideally provide high resolution climate/environmental information of the last10,000 years (Magny et al. 2013). This time interval (corresponding to theHolocene) is a key period to investigate short and long-term climate variabilityand to improve prediction in a warming climate.In this study we present an integrated approach focusing on a mountainous lake(Aguelmam Azigza). The modern lake system study is based on site monitoring(2012-2016) and available regional hydro-climatic data. These data show thatlake level changes during the instrumented period were mainly driven byprecipitation following the high inter-annual variability. These data are thencompared with accurately dated short sediment cores retrieved in the same lake.Micro-scale geochemical and sedimentological analyses of these sequencesenable us to identify various sedimentary facies that can be linked with periodsof high (low) lake levels over the past decades.
The Mediterranean Region under Climate ChangeLa méditerranée face au changement climatique

insu-01394690
https://hal-insu.archives-ouvertes.fr/insu-01394690
https://hal-insu.archives-ouvertes.fr/insu-01394690/document
https://hal-insu.archives-ouvertes.fr/insu-01394690/file/Vidaletal.2016-COP22-Chap1.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Studies on tree biomechanical design usually focus on stem stiffness, resistance to breakage or uprooting, and elastic stability. Here we consider another biomechanical constraint related to the interaction between growth and gravity. Because stems are slender structures and are never perfectly symmetric, the increase in tree mass always causes bending movements. Given the current mechanical design of trees, integration of these movements over time would ultimately lead to a weeping habit unless some gravitropic correction occurs. This correction is achieved by asymmetric internal forces induced during the maturation of new wood. The long-term stability of a growing stem therefore depends on how the gravitropic correction that is generated by diameter growth balances the disturbance due to increasing self weight. General mechanical formulations based on beam theory are proposed to model these phenomena. The rates of disturbance and correction associated with a growth increment are deduced and expressed as a function of elementary traits of stem morphology, cross-section anatomy and wood properties. Evaluation of these traits using previously published data shows that the balance between the correction and the disturbance strongly depends on the efficiency of the gravitropic correction, which depends on the asymmetry of wood maturation strain, eccentric growth, and gradients in wood stiffness. By combining disturbance and correction rates, the gravitropic performance indicates the dynamics of stem bending during growth. It depends on stem biomechanical traits and dimensions. By analyzing dimensional effects, we show that the necessity for gravitropic correction might constrain stem allometric growth in the long-term. This constraint is compared to the requirement for elastic stability, showing that gravitropic performance limits the increase in height of tilted stem and branches. The performance of this function may thus limit the slenderness and lean of stems, and therefore the ability of the tree to capture light in a heterogeneous environment.
ISSN: 0022-5193

hal-00534316
https://hal.archives-ouvertes.fr/hal-00534316
DOI : 10.1016/j.jtbi.2008.10.011

Éditeur(s) : HAL CCSD
Résumé : International audience
Semantic web standards, tools, ontologies and related technologies have considerably matured in the recent years. Nowadays, accessing a wide catalogue of biological, social, environmental, and ecological data sources helps stakeholders working on biodiversity to answer their complex questions. Will the real time access to web resources effectively support the definition of strategies to conserve and manage biodiversity? How might semantic web technologies help us to handle the complex and heterogeneous big data related to biodiversity? The workshop aims to identify the key challenges faced by the bioinformatics community, discuss potential solutions and identify the opportunities emerging from the trans-disciplinary interactions between Plant Science and Informatics experts. Therefore, we expect the bioinformatics experts to explain how they apply semantic web standards and tools to their scientific topic, from biology, agriculture, agro-ecology, genomics, environmental studies, to social sciences, citizen sciences. Research papers presenting various aspects of semantic web technologies applied to biodiversity data, ranging from position papers to implemented systems descriptions and their evaluation, will be selected. We are particularly interested in the use of the semantic technologies to design and develop systems that supports research on agricultural and wild biodiversity conservation and management for food security. Examples may include strategies for resilience to climate change pressures, sustainability of productive ecosystems, ecosystems services monitoring or territories management, rather than systems supporting only research on climate patterns or soil erosion.
http://hal-lirmm.ccsd.cnrs.fr/lirmm-00831757

lirmm-00831757
http://hal-lirmm.ccsd.cnrs.fr/lirmm-00831757
http://hal-lirmm.ccsd.cnrs.fr/lirmm-00831757/document

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
The genus Nasutitermes is among the most abundant wood-feeding Termitidae and an extremely diverse and heterogeneous group in terms of its biogeography and morphology. Despite the major role of several Nasutitermes species as structural pests, the phylogenetic status of this genus is still unclear, along with a confused taxonomy and species identification remaining difficult. The first aim of this review was thus to gather and discuss studies concerning the taxonomic status of the genus Nasutitermes in order to clarify this crucial point. Then, our goal was to gain new insights into the management of N. corniger, considered to be the most economically detrimental pest of this genus in South America and a Nasutitermes model species, while filtering available information concerning its biology through the prism of termite control, as well as critically examine the existing methods. We indeed strongly believe that increasing our knowledge of this species’ biological strategies is the key to progress in the challenging question of their sustainable management.
ISSN: 1612-4758

hal-01467356
http://hal.upmc.fr/hal-01467356
http://hal.upmc.fr/hal-01467356/document
http://hal.upmc.fr/hal-01467356/file/Boulogne_2017_Ecologysur termites.pdf
DOI : 10.1007/s10340-016-0796-x