Éditeur(s) : HAL CCSD Springer Verlag
Résumé : Geomorphic landscape features have been suggested as indicators of forest diversity. However, their explanatory power has not yet been explicitly tested at a regional scale in tropical rainforest. We used forest inventories conducted according to a stratified sampling design (3,132 plots in 111 transects at 33 sites) and holistic multi-scale geomorphological mapping derived from a Shuttle Radar Topography Mission digital elevation model to describe and explain spatial patterns in floristic composition across French Guiana (80,000 km2). We measured and identified 123,906 trees with DBH C20 cm and used constrained and unconstrained ordinations to analyze variations in the abundance of 221 taxa and 51 families. Variance partitioning and variograms were used to detect spatial patterns in species composition, compare the explanatory power of spatial and environmentalfactors, and select the variables that best explain forest composition. Strong floristic patterns corresponded to a major latitudinal gradient and significant sub-regional floristic structure. Geomorphological landscapes shaped by historic climate fluctuations and major geological events successfully captured these patterns and explained the variation in abundance of 80 taxa, corresponding to 65 % of the inventoried trees. Our findings suggest that long-term forest dynamics are under substantial ‘‘geomorphographic control’’. A geomorphological perspective on landscapes that incorporates current and past environmental filters and historical biogeographical processes could thus be used more systematically in tropical regions for regional planning and forest conservation
ISSN: 0960-3115

hal-01204224
https://hal.archives-ouvertes.fr/hal-01204224
DOI : 10.1007/s10531-014-0854-8
PRODINRA : 295767

Résumé : This study contributes to inventory programme on emerging pollutants in French waters and to the general reflection which will enable to update the list of relevant substnaces to be included in the new monitoring programmes to come. This work concerns the coastal part of the inventory programme on marine waters and sediments of France and five overseas french departments (OFD). In this goal, passive sampling techniques and direct extraction techniques have been tested through the implementation of in situ systems integrators POCIS (Polar Organic Chemical Integrative Sampler) and the extraction by SBSE bars (Stir bar sorptive extraction) directly in the waters sampled. Finally, analyzes of sediment completed the acquisition of data. Arount 40 stations were sampled for shore waters and sediments were collected from 7 stations in France and 5 stations in the OFD (one station/OFD). In analytical terms, 1054 analyzes were carried out on POCIS membranes and only 64 data exceeded the limit of detection (LD), 12726 analyzes came from SBSE extractions and 304 were above the LD and 1536 analyzes in sediment showed that 237 data were above the limit of quantification (LQ). Finally, 169 different substances were investigated and 68 of them were detected at least once in water or sediment. The lack of replicates for POCIS analyzes and those in the sediment limited the statistical treatment of data. The results were used to determine the level of contamination, the detection frequency (FD), the distribution of substances between France and OFD, the comparison with environmental thresholds (the PNEC) and the origin/use of the substances. In littoral waters, 32 substances were identified and 19 were quantified. In the sediment, 47 substances were quantified. Nine substances were detected in both water and sediment. In France, the 15 substances that were quantified at higher frequencies (> 50 %, one out of 2 sites) were quantified in sediments. These are the congeners of PAHs (11 substances), organic forms of tin (2 substances), diethyl lead and 209 PBDE congener. In the OFD, the 22 substances that were quantified at higher frequencies (> 50 %, one out of 2 sites) were measured in sediments. These are congeners of PAHs (13 substances) , alkylphenols ( 3 molecules: the mono and diethoxyate nonylphenol and the 4-ter butylphenol ), the organic forms of tin (2 substances), products of metabolism insecticide DDT ( 2 products), diethyl lead and the 209 PBDE congener. The study of the highest concentrations distribution of substances between France and OFD shows that the 5 (among 19 molecules) highest concentrations in water and the 6 (among 47 molecules) highest concentrations in sediments are found in OFD. Reference to PNEC indicates that four pesticides in water and 11 different substances in sediments exceed the environmental thresholds. Substances with highest detection frequency are found in the sediment. The distribution of data by use or nature of the substance shows that plasticizers and pesticides predominate in raw water, both in France and overseas departments while PAHs in sediments dominate in France and in OFD.
Cette étude contribue au programme d’inventaire des substances chimiques émergentes dans les eaux françaises et à la réflexion qui doit permettre d’actualiser la liste des substances pertinentes à surveiller de manière régulière dans le cadre des nouveaux programmes de surveillance. Ce travail concerne la partie littorale de l’inventaire, sur les eaux brutes et les sédiments de la métropole et des 5 DOM. Dans ce cadre, des techniques d’échantillonnage passif (EP) et d’extraction directe ont été testées grâce à la mise en place in situ de systèmes intégrateurs POCIS (Polar Organic Chemical Integrative Sampler) et à l’extraction par des barres SBSE (Stir Bar Sorptive Extraction) directement dans les eaux échantillonnées. Enfin des analyses de sédiments ont complété l’acquisition des données. L’eau d’une quarantaine de stations a été échantillonnée et des sédiments ont été prélevés sur 7 stations en métropole et dans 5 stations dans les DOM (une station par DOM). En termes analytiques, 1054 analyses ont été réalisées sur les membranes POCIS et 64 dépassaient la limite de détection (LD), 12726 analyses ont concerné les extractions par SBSE pour 304 résultats situés au dessus de la LD et 1536 analyses effectuées dans le sédiment ont donné 237 valeurs supérieures à la limite de quantification (LQ). Au bilan 169 substances différentes ont été recherchées et 68 d’entre elles ont été détectées au moins une fois dans l’eau brute ou le sédiment. L’absence de réplicats pour les analyses POCIS et celles dans le sédiment a limité le traitement statistique des données. Les résultats ont permis de déterminer le niveau de contamination, la fréquence de détection (FD), la distribution métropole/DOM des substances, la comparaison avec les seuils environnementaux (PNEC) et l’origine des substances. Dans l’eau 32 substances ont été identifiées et 19 ont été quantifiées. Dans le sédiment 47 substances sont quantifiées .Neuf substances sont détectées à la fois dans l’eau et le sédiment. En métropole, les 15 substances quantifiées aux plus hautes fréquences (> 50%, soit un site sur 2) sont quantifiées dans les sédiments. Ce sont les congénères de la famille des HAP (11 substances), des formes organiques de l’étain (2 substances), le plomb diéthyle et le congénère 209 des PBDE. Dans les DOM, les 22 substances quantifiées aux plus hautes fréquences (> 50%, soit un site sur 2) sont mesurées dans les sédiments. Ce sont des congénères de la famille des HAP dans (13 substances), des alkylphénols (3 substances : nonylphénols mono et diéthoxylés et 4-ter butylphénol), des formes organiques de l’étain (2 substances), des produits de métabolisation de l’insecticide DDT (2 produits), du plomb diéthyle et du congénère 209 des PBDE. L’étude de la répartition des plus fortes concentrations entre la métropole et les DOM montre que les 5 (sur 19) concentrations les plus élevées mesurées dans l’eau et les 6 (sur 47) plus fortes concentrations mesurées dans les sédiments sont trouvées dans les DOM. Les substances mesurées aux fortes fréquences sont observées dans le sédiment. La référence à la PNEC indique le dépassement de la norme pour 4 pesticides dans l’eau brute et 11 substances diverses dans les sédiments. L’exploitation des données par usage ou nature des substances montre que les plastifiants et les pesticides sont majoritaires dans les eaux brutes, à la fois en métropole et dans les DOM alors que ce sont les HAP qui dominent dans les sédiments, en métropole et dans les DOM.

Droits : 2014 ONEMA, Ifremer
http://archimer.ifremer.fr/doc/00259/36994/35483.pdf
http://archimer.ifremer.fr/doc/00259/36994/

Éditeur(s) : HAL CCSD Ethnobotany Research and Applications
Résumé : We examined the limitations of parataxonomic inventories for developing management plans for woody plant resources in tropical rain forests of southwestern Amazonia. Using compilations of herbarium labels, forest personnel interviews and published species descriptions, we assessed the accuracy of common names as parataxonomic units (PUs). We identified 384 common names for 310 harvested woody plant species in the Brazilian state of Acre, of which only 50% were unique to a single taxonomic species. About 10% of common names referred to more than one species, more than half of which included multiple genera. For the 106 species from the Acre sample common to the MAP region including Madre de Dios, Peru and Pando, Bolivia, we identified 198 common names. Splitting was much more frequent in this sample, with more than 80% of species having more than one common name. When the Acre sample was expanded to 131 species from the Brazilian Amazon region, including the states of Amazonas and Para, we identified 740 common names, with nearly 90% of species being represented by more than one common name. Errors and inaccuracy of parataxonomy may contribute to market instability if product orders can not be homogenized within regional markets, and to unsustainable harvests if species are mistakenly lumped into single parataxonomic units. We discuss several programs currently being implemented by our collaborative team in the region to address this issue, including field guides based on digital photography, field courses, and workshops featuring discussions between regional inventory personnel and botanists.
ISSN: 1547-3465

hal-01032404
https://hal.archives-ouvertes.fr/hal-01032404

Éditeur(s) : HAL CCSD Royal Society of Chemistry
Résumé : International audience
Low-level water measurements of geological materials are fundamental in understanding the volatile inventories of the Earth from the mantle to crustal reservoirs. Here we describe the development of microanalytical techniques using the new SHRIMP SI ion microprobe to measure the abundances of OH− (as a proxy for water) in volcanic glass and nominally anhydrous minerals (NAMs). Samples were first analysed at the Carnegie Institute of Washington (CIW) on their Cameca ims-6f with calibrations based on previous FTIR and manometry analyses. SHRIMP SI is a large geometry ion microprobe and is currently mainly used for O and S isotope analyses. The analytical protocol used here incorporates multiple collection of 16O− and 16O1H− allowing rapid measurements. A single calibration line incorporating all glasses and NAMs for the SHRIMP SI allows calibration of 16O1H−/16O− to H2O over a wide range in concentration (50 to 15 000 ppm H2O). This calibration line has around a 10% uncertainty, which appears to be limited only by sample heterogeneity. The current background for SHRIMP analysis is between 20–40 ppm but this is expected to improve with improved pumping on the source chamber. A current limitation to water analysis of NAM samples, by any technique, is having a range of standard materials to enable OH− calibration to absolute H2O concentrations. Data are presented for 7 NAM samples (2 olivines, 2 orthopyroxenes and 3 clinopyroxenes) that appear to be promising as potential standards for international laboratory H2O measurements. These NAM samples have been analysed and characterised here by SHRIMP SI, FTIR, EMP and the Cameca ims-6f ion microprobe at CIW. Four of these samples have previously been measured by manometry to determine absolute H2O concentrations.
ISSN: 0267-9477

hal-01243514
https://hal.archives-ouvertes.fr/hal-01243514
DOI : 10.1039/c5ja00047e

Éditeur(s) : HAL CCSD Western Indian Ocean Marine Science Association
Résumé : International audience
Juan de Nova is one of the scattered islands known as Iles Eparses in the Mozambique Channel (Western Indian Ocean). Historically, they have been isolated from many anthropogenic influences which makes them ideal areas to study biodiversity for comparison with areas that are heavily impacted by urbanization and fishing. The programme BioReCie (Biodiversity, Resources and Conservation of Eparses Islands) undertook inventories of several marine groups, including echinoderms, which had hitherto not been assessed in Juan de Nova. A multidisciplinary team surveyed the reef slopes of the island using SCUBA to a depth of 25 m as well as the reef flats at low tide, collecting specimens and taking photos for identification. Sixty echinoderm species were found, with 51 occurring on the reef flats and in the lagoon and 22 on the reef slopes, comprising 21 species of Holothuroidea, 16 Ophiuroidea, 10 Echinoidea, 7 Asteroidea, and 6 Crinoidea. Commercial species of Holothuroidea, some of which are classified as endangered in the IUCN red list, i.e. Thelenota ananas and Holothuria nobilis, were present on the reef flats, reef slopes and in the lagoon of the island, indicating the value that protection has on biodiversity.
ISSN: 0856-860X

hal-01306709
http://hal.univ-reunion.fr/hal-01306709
http://hal.univ-reunion.fr/hal-01306709/document
http://hal.univ-reunion.fr/hal-01306709/file/A%20First%20Inventory%20of%20Echinodermata%20at%20Juan%20de%20Nova_hal.pdf

Éditeur(s) : HAL CCSD Wiley
Résumé : 1. Considerable debate surrounds the extent to which tropical forests can be managed for resource extraction while conserving biodiversity and ecosystem properties, which depend on functional composition. Here we evaluate the compatibility of these aims by examining the effects of logging on taxonomic and functional diversity and composition in a tropical forest. 2. Twenty years after selective logging, we inventoried 4140 stems regenerating in logging gaps and adjacent undisturbed areas, and we integrated a database of 13 functional traits describing leaf and wood economics of tropical trees. 3. We found no differences in taxonomic and functional richness among habitats, but logging gaps had significantly higher taxonomic and functional evenness. 4. Logging also effected striking, long-term changes in both species and functional composition. In particular, the xylem density of recruits in logging gaps was 6% less than in unlogged forests, leaves were 11% less tough and had 613% greater mineral nutrient concentrations. 5. Synthesis and applications. Our results suggest that managers of tropical forests should limit overall surface area converted to logging gaps by creating fewer, larger gaps during selective logging, to reduce impacts on the taxonomic and functional composition of the regenerating stand.
ISSN: 0021-8901

hal-01032420
https://hal.archives-ouvertes.fr/hal-01032420
DOI : 10.1111/j.1365-2664.2012.02164.x

Résumé : For several years the fishermen of the West Indies have directed their activities towards new fishing grounds, notably the bathyales zones adjacent to island plateaux up to approximately 1000 metres in depth. Explorations carried out since 1989 have shown that diverse crustacean populations could be exploited. However, populations and exploitable stocks are not well known. The use of crustaceans traps as a fishing technique permits the capture of shellfish, shrimps and prawns of which at least six species could have commercial interest. The main objective of this work is do draw up an inventory of the principal commercial species as well as the accompanying species belonging to the subordres Decapoda macrura, anomura, brachyura and to the orders Isopoda and Amphipoda. It is intended for fishermen and other socio-professionals of the fishing industry. It should enable them to identify and name these previously unexploited varieties of Crustacea to facilitate their sale in local markets.
Depuis quelques années, des pêcheurs antillais orientent leurs activités vers de nouveaux secteurs de pêche, notamment les zones bathyales adjacentes aux plateaux insulaires, jusque vers 1000 mètres de profondeur. Des campagnes exploratoires menées depuis 1989, ont montré que diverses populations carcinologiques pouvaient faire l'objet d'une exploitation. Toutefois, populations et stocks exploitables ne sont pas bien connus. L'emploi du casier comme technique de pêche, permet la capture de crustacés, crevettes et langoustines, dont au moins 6 espèces peuvent avoir un intérêt commercial. Ce travail nomenclatural a pour premier objectif de dresser l'inventaire des principales espèces commerciales ainsi que des espèces accompagnatrices appartenant aux infra-ordres des Décapodes macroures, anomoures, brachyoures, et aux ordres des Isopodes et des Amphipodes. Il est destiné aux pêcheurs et aux autres personnes des catégories socio-professionnelles de la filière pêche. Il devrait leur permettre d'identifier et de nommer ces produits nouveaux pour faciliter leur vente sur les marchés locaux.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1996/rapport-1543.pdf
http://archimer.ifremer.fr/doc/00000/1543/

Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
Canopy height is a key variable in tropical forest functioning and for regional carbon inventories. We investigate the spatial structure of the canopy height of a tropical forest, its relationship with environmental physical covariates, and the implication for tropical forest height variation mapping. Making use of high-resolution maps of LiDAR-derived Digital Canopy Model (DCM) and environmental covariates from a Digital Elevation Model (DEM) acquired over 30,000 ha of tropical forest in French Guiana, we first show that forest canopy height is spatially correlated up to 2500 m. Forest canopy height is significantly associated with environmental variables, but the degree of correlation varies strongly with pixel resolution. On the whole, bottomland forests generally have lower canopy heights than hillslope or hilltop forests. However, this global picture is very noisy at local scale likely because of the endogenous gap-phase forest dynamic processes. Forest canopy height has been predictively mapped across a pixel resolution going from 6 m to 384 m mimicking a low resolution case of 3 points·km −2. Results of canopy height mapping indicated that the error for spatial model with environment effects decrease from 8.7 m to 0.91 m, depending of the pixel resolution. Results suggest that, outside the calibration plots, the contribution of environment in shaping the global canopy height distribution is quite limited. This prevents accurate canopy height mapping based only on environmental information, and suggests that precise canopy height maps, for local management purposes, can only be obtained with direct LiDAR monitoring.
ISSN: 2072-4292

hal-01590726
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590726
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590726/document
https://hal-univ-guyane.archives-ouvertes.fr/hal-01590726/file/remotesensing-08-00747.pdf
DOI : 10.3390/rs8090747

Éditeur(s) : HAL CCSD WILEY-BLACKWELL Wiley
Résumé : International audience
Connectivity among populations determines the dynamics and evolution of populations, and its assessment is essential in ecology in general and in conservation biology in particular. The robust basis of any ecological study is the accurate delimitation of evolutionary units, such as populations, metapopulations and species. Yet a disconnect still persists between the work of taxonomists describing species as working hypotheses and the use of species delimitation by molecular ecologists interested in describing patterns of gene flow. This problem is particularly acute in the marine environment where the inventory of biodiversity is relatively delayed, while for the past two decades, molecular studies have shown a high prevalence of cryptic species. In this study, we illustrate, based on marine case studies, how the failure to recognize boundaries of evolutionary-relevant unit leads to heavily biased estimates of connectivity. We review the conceptual framework within which species delimitation can be formalized as falsifiable hypotheses and show how connectivity studies can feed integrative taxonomic work and vice versa. Finally, we suggest strategies for spatial, temporal and phylogenetic sampling to reduce the probability of inadequately delimiting evolutionary units when engaging in connectivity studies.
ISSN: 0962-1083

hal-01218810
https://hal.archives-ouvertes.fr/hal-01218810
DOI : 10.1111/mec.13048

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé :  
We explored the relationship between soil processes, estimated through soil respiration (Rsoil), and the spatial variation in forest structure, assessed through the distribution of tree size, in order to understand the determinism of spatial variations in Rsoil in a tropical forest. The influence of tree size was examined using an index (Ic) calculated for each tree as a function of (1) the trunk cross section area and (2) the distance from the measurement point. We investigated the relationships between Ic and litterfall, root mass and Rsoil, respectively. Strong significant relationships were found between Ic and both litterfall and root mass. Rsoil showed a large range of variations over the 1-ha experimental plot, from 1.5 to 12.6 gC m−2 d−1. The best relationship between Ic and Rsoil only explained 17% of the spatial variation in Rsoil. These results support the assumption that local spatial patterns in litter production and root mass depend on tree distribution in tropical forests. Our study also emphasizes the modest contribution of tree size distribution-which is mainly influenced by the presence of the biggest trees (among the large range size of the inventoried trees greater than 10 cm diameter at 1.30 m above ground level or at 0.5 m above the buttresses)-in explaining spatial variations in Rsoil.
Plant and Soil

hal-01032200
https://hal.archives-ouvertes.fr/hal-01032200
DOI : 10.1007/s11104-011-0848-1

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : The EUNIS (European Union Nature Information System) habitat classification system aims to provide a common European reference set of habitat types within a hierarchical classification, and to cover all terrestrial, freshwater and marine habitats of Europe. The classification facilitates reporting of habitat data in a comparable manner, for use in nature conservation (e.g. inventories, monitoring and assessments), habitat mapping and environmental management. For the marine environment the importance of a univocal habitat classification system is confirmed by the fact that many European initiatives, aimed at marine mapping, assessment and reporting, are increasingly using EUNIS habitat categories and respective codes. For this reason substantial efforts have been made to include information on marine benthic habitats from different regions, aiming to provide a comprehensive geographical coverage of European seas. However, there still remain many concerns on its applicability as only a small fraction of Europe's seas are fully mapped and increasing knowledge and application raise further issues to be resolved. This paper presents an overview of the main discussion and conclusions of a workshop, organised by the MeshAtlantic project, focusing upon the experience in using the EUNIS habitats classification across different countries and seas, together with case studies. The aims of the meeting were to: (i) bring together scientists with exper_ience_in the use of the EUNIS marine classification and representatives from the European Environment Agency (EEA); (ii) agree on enhancements to EUNIS that ensure an improved representation of the European marine habitats; and (iii) establish practices that make marine habitat maps produced by scientists more consistent with the needs of managers and decision-makers. During the workshop challenges for the future development of EUNIS were identified, which have been classified into five categories: (1) structure and hierarchy; (2) biology; (3) terminology; (4) mapping; and (5) future development. The workshop ended with a declaration from the attendees, with recommendations to the EEA and European Topic Centre on Biological Diversity, to take into account the outputs of the workshop, which identify weaknesses in the current classification and include proposals for its modification, and to devise a process to further develop the marine component of the EUNIS habitat classification. (C) 2012 Elsevier Ltd. All rights reserved.
Marine Pollution Bulletin (0025-326X) (Pergamon-elsevier Science Ltd), 2012-12 , Vol. 64 , N. 12 , P. 2630-2638

Droits : 2012 Elsevier Ltd. All rights reserved.
http://archimer.ifremer.fr/doc/00125/23663/22686.pdf
DOI:10.1016/j.marpolbul.2012.10.010
http://archimer.ifremer.fr/doc/00125/23663/

Résumé : The principal objective of the work carried out in the deep waters adjoining the island shelf around Martinique between July 1991 and april 1992 was to establish an initial inventory of potentially exploitable deep benthic resources.The cylindrical lobster pot used during fishing experiments allowed the catch of a varied carcinological marine organisms of which six species at least have economic interest : 5 species of shrimp all belonging to the sub-order of Caridea of the Pandalidae family : Plesionika edwardsi, P. (macropoda) polyacanthomerus, P.laevis, Heterocarpus ensifer and H.laevigatus, and one species of prawn of the Nephropidae family : Eunephrops cadenasi. The yields, compared to those of commercial fishermen, were medium or good for Plesionika edwardsi and P. (macropoda) polyacanthomerus between depths of 200 - 300 metres ; for Plesionika laevis and Eunephrops cadenasi in the vicinity 500 metres ; for Heterocarpus laevigatus below 700 metres. The species Heterocarpus ensifer , of which the vertical distribution is very spread out from 170 to 600 metres, seems divided into two populations which provide good yields about 300 metres and below of 450 mètres. Data on the environment and the biology of the species where also established, especially on growth and breeding. For example growth of the pandalids is relatively rapid and their life cycle rather short, between three and four or five years according to the species. At least 2 principal egg-laying seasons occur in the annual cycle. Information is given on the isopoda of the family of Cirolanidae, Bathynomus giganteus, which could eventually, under certain conditions, become of interest to the fishermen.
Les pêches expérimentales effectuées dans les eaux profondes circum-martiniquaises,attenantes au plateau insulaire, entre juillet 1991 et avril 1992, avaient pour principal objectif d'établir un premier inventaire des ressources benthiques profondes potentiellement exploitables. Le casier cylindrique , a permis la capture d'une faune carcinologique variée dont 6 espèces au-moins ont présenté un intérêt économique : 5 espèces de crevettes appartenant toutes à l'infra-ordre des Caridea, famille des Pandalidae, Plesionika edwardsi, P. (macropoda) polyacanthomerus, P.laevis, Heterocarpus ensifer et H.laevigatus, et une espèce de langoustine, famille des Nephropidae: Eunephrops cadenasi. Les rendements, comparés à ceux des professionnels, sont moyens ou bons pour Plesionika edwardsi et P.(macropoda) polyacanthomerus entre 200 et 300 mètres de profondeur; pour Plesionika laevis et Eunephrops cadenasi autour de 500 mètres ; pour Heterocarpus laevigatus en-dessous de 700 mètres. L'espèce Heterocarpus ensifer dont la distribution verticale est très étendue, de 170 à 600 mètres, semble divisée en 2 populations pour lesquelles de bons rendements peuvent être obtenus vers 300 mètres et en-dessous de 450 mètres. Des données sur l'environnement et la biologie des espèces ont également été acquises, notamment sur la croissance et la reproduction. Ainsi la croissance des pandalides est relativement rapide et leur longévité plutôt courte, entre 3 et 4 ou 5 années selon les espèces. Au moins deux pontes principales interviennent sur un cycle annuel. Des informations sont données sur l'isopode de la famille des Cirolanidae, Bathynomus giganteus, qui pourrait éventuellement, sous certaines conditions, présenter un intérêt pour les pêcheurs.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1994/rapport-1540.pdf
http://archimer.ifremer.fr/doc/00000/1540/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Ce travail interroge le processus d’inscription à l’inventaire des sites et monuments naturels protégés au titre de l’environnement. Quelles protections offre véritablement cet outil notamment dans l’outre-mer ? Comment concilier protection de l’environnement, patrimonialisation et développement économique ? Les critères d’inscription, définis en 1930 et qui comportent une vision « universelle » — et occidentale — de la valeur, de l’environnement, n’ont-ils jamais été discutés et soumis à l’approbation et à la sensibilité des populations issues d’autres cultures, dans ce cas précis les Bushinengé de Guyane ? Et, surtout qu’entendons-nous exactement par « site patrimonial » ?
This article questions the registration process in the inventory of natural sites and monuments protected under the environment. What protections truly offer this tool, especially in the French territories “overseas”? How to reconcile environmental protection, heritage creation and economic development? The listing criteria, defined in 1930 and which have a vision "universal" – a western view – of the environment, have they ever been discussed and submitted for approval and to the sensitivity of the populations concerned, in this case the Bushinenge people? And what do we mean exactly by "heritage site"?
Papaïchton
Guyane française

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.10369
http://journals.openedition.org/etudescaribeennes/10369

Éditeur(s) : HAL CCSD American Society of Tropical Medicine and Hygiene
Résumé : International audience
Anti-leishmaniasis drug resistance is a common problem worldwide. The aim of this study was to inventory the general in vitro level of sensitivity of Leishmania isolates circulating in French Guiana and to highlight potential in vitro pentamidine-resistant isolates. This sensitivity study was conducted on 36 patient-promastigote isolates for seven drugs (amphotericin B, azithromycin, fluconazole, meglumine antimoniate, miltefosine, paromomycin, and pentamidine) using the Cell Counting Kit-8 viability test. The IC50 values obtained were heterogeneous. One isolate exhibited high IC50 values for almost all drugs tested. Pentamidine, which is the first-line treatment in French Guiana, showed efficacy at very low doses (mean of 0.0038 μg/mL). The concordance of the in vitro pentamidine results with the patients' clinical outcomes was 94% (K = 0.82).
ISSN: 0002-9637

inserm-01481512
http://www.hal.inserm.fr/inserm-01481512
http://www.hal.inserm.fr/inserm-01481512/document
http://www.hal.inserm.fr/inserm-01481512/file/2017%2C%20Ginouves%20-%20In%20vitro%20sensitivity%20of%20cutaneous%20leishmania.pdf
DOI : 10.4269/ajtmh.16-0373

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A comprehensive inventory of global biodiversity would be greatly improved by automating methods for species delimitation. The Automatic Barcode Gap Discovery method, the Poisson tree processes algorithm and the Generalized mixed Yule coalescent model have been proposed as means of increasing the rate of biodiversity description using single locus data. We applied these methods to explore the diversity within the Aglaopheniidae, a hydrozoan family with many species widely distributed across tropical and tem perate oceans. Our analyses revealed widespread cryptic diversity in this family, almost half of the morpho species presenting several independent evolutionary lineages, as well as support for cases of synonymy. For two common species of this family, Lytocarpia brevirostris and Macrorhynchia phoenicea, we compared the outputs to clustering analyses based on microsatellite data and to nuclear gene phylo genies. For L. brevirostris, microsatellite data were congruent with results of the species delimitation methods, revealing the existence of two cryptic species with Indo Pacific distribution. For M. phoenicea, all analyses confirmed the presence of two cryptic species within the South Western Indian Ocean. Our study suggests that the diversity of Aglaopheniidae might be much higher than assumed, likely related to low dispersal capacities. Sequence based species delimitation methods seem highly valuable to reveal cryptic diversity in hydrozoans; their application in an integrative framework will be very useful in describing the phyletic diversity of these organisms.
ISSN: 1055-7903

hal-01359407
https://hal.archives-ouvertes.fr/hal-01359407
https://hal.archives-ouvertes.fr/hal-01359407/document
https://hal.archives-ouvertes.fr/hal-01359407/file/Postaire-etal2016MolPhylEvol_sp_delim_hydraires_HAL.pdf
DOI : 10.1016/j.ympev.2016.08.013

Éditeur(s) : HAL CCSD Institut de Géographie Alpine
Résumé : International audience
The international symposium on «Urban Growth and Natural Hazards, in particular in Developing Countries» was held in the University Blaise Pascal, Clermont-Ferrand (France) on December 2 and 3, 1994. This meeting brought together about 70 research people, Ph.D. students, and professionals from France and 12 countries, representing universities, research agencies, as well as government and private companies. The symposium aimed to gather specialized people who are engaged and acting in programmes on hazard appraisal, risk prevention and urban management in city environment. These people aimed to compare experiences acquired in two different fields: on the one hand urban growth and its consequences, and on the other hand, natural hazards and effects, in particular in Developing Countries.Half-way through the International Decade for Natural Hazard Disaster Reduction, we strove to reconcile two points of view usually distincts: nature-oriented research and society-oriented research on hazards. These convergent approaches should merge, not only to improve knowledge of natural hazards and risks, but also to cope with hazard and risk situation on a day-basis in a city. We also choose to study both approaches in Developing Countries (DC) because most of the large cities of the world already are or will be located there in near future. In addition, city location in DC coincides with tropical areas where natural hazards are most frequent threats to life, in particular in mountains, on seashores, and on active convergent plate margins. We stress the fact that the 3 following topics are often lacking in studies which have been carried out on natural hazard appraisal and management. 1) How should we include social and economical factors, and particularly a sound analysis of vulnerability of people and values at risk ? 2) How should we cope with hazard management in large cities of Developing Countries ? 3) What is the specific task of research people in hazard case studies engaged in urban environment and management?Three themes correspond to the three sessions of the symposium. (1) Natural hazards and environmental factors : inventory, diagnostic and classification, (2) Vulnerability of urban society and environment : concepts, approaches, and classification, (3) Tools for urban risk prevention and risk management in case of crisis and catastrophes.
Ce numéro de la Revue de Géographie Alpine reprend une dizaine parmi les 41 contributions exposées par des chercheurs français et étrangers lors du colloque international « Croissance urbaine et risques naturels dans les pays en développement » qui s'est déroulé à l'Université Blaise Pascal, Clermont-Ferrand, les 2 et 3 décembre 1994. L'objectif général du colloque était de rassembler les diverses compétences existant en France et à l'étranger dans le domaine de l'évaluation et de la gestion des risques naturels et de confronter les expériences acquises à l'interface entre les villes en croissance et le champ d'action des phénomènes naturels créateurs de risques. Le colloque a donc réuni des chercheurs, des doctorants et des praticiens français et leurs collègues étrangers chargés de prévention, de gestion des risques naturels et de gestion urbaine, principalement dans les grandes villes des pays en développement (P.E.D.).Parvenus à mi-chemin de la Décennie Internationale pour la Prévention des Catastrophes Naturelles, nous avons porté des regards croisés sur les approches naturalistes et sociologiques des risques naturels. Il est maintenant nécessaire de faire converger ces approches, non seulement dans la connaissance des menaces et des risques, mais dans la gestion du risque quotidien en milieu urbain. Nous avons concentré ces approches dans les pays en développement ; en effet, le site de leurs grandes villes coïncide souvent avec le champ d'action des phénomènes naturels générateurs de risques, notamment dans la zone intertropicale et en particulier dans les marges continent ales actives (par exemple autour du Pacifique).Nous avons porté l'accent sur 3 points principaux, qui semblent en partie faire défaut dans les études et les méthodes actuellement mises en oeuvre dans la gestion des risques naturels : 1) comment prendre en compte les aspects socio-économiques, en particulier les types d'analyse des vulnérabilités ? 2) comment aborder la gestion des risques en milieu urbain dans les P.E.D. ? 3) quel rôle doit jouer le chercheur en Sciences de l'Homme, de la Société et de la Terre dans les analyses, les expertises consacrées aux risques et surtout dans leur gestion globale, à la charnière des sociétés citadines précaires et des milieux « naturels » contraignants ?Les contributions ont été regroupées, exposées et discutées lors du colloque sous forme de 3 thèmes. (1) Les phénomènes naturels créateurs de dommages (= menaces) : diagnostic, inventaire et typologie, (2) Les vulnérabilités des sociétés et des espaces urbanisés : concepts, typologie et modes d'analyse, (3) Les outils d'aide à la prévention et à la gestion du risque en milieu urbain.
Colloque international : "Croissance urbaine et risques naturels dans les pays en développement"
Clermont-Ferrand, Université Blaise Pascal, France

ISBN : 0035-1121
hal-01165252
https://hal.archives-ouvertes.fr/hal-01165252

Résumé : This report presents the implementation process and the current status of the marine GIS database project in Mont Saint Michel Bay, called SIMON. This document provides a user's guide for Sextant (technical platform for SIMON), describes various protocols that were developed (data validation, creation of metadata and preparation for uploading data on Sextant) and gives an inventory of data currently available in SIMON. This report is thus intended for end users but also for project coordinators, particularly those who are responsible for geomatics management using SIMON....
Ce rapport a pour objectif de présenter la démarche de mise en place et l'état d'avancement du projet de SIG marin en Baie du Mont Saint-Michel, nommé SIMON. Il propose un manuel d'utilisation de Sextant (support technique de SIMON), divers protocoles mis au point (validation des données, création des métadonnées et préparation au chargement des données sur Sextant), ainsi qu'un catalogue des données actuellement disponibles sur SIMON. Il s'adresse donc aux utilisateurs mais aussi aux porteurs du projet, notamment l'administrateur qui prendra en charge la gestion géomatique de SIMON. Ce projet a bénéficié de financements de la Délégation Interministérielle à l'Aménagement et à la Collectivité des Territoires (DIACT) via le Fond National d'Aménagement et de Développement du Territoire (FNADT), de la DIREN Bretagne et de l'Association Interdépartementale Manche Ille-et-Vilaine. SIMON est un projet de mutualisation de données, il n'aurait donc pu voir le jour sans la participation active des très nombreux producteurs de données de la baie du Mont Saint-Michel que nous remercions vivement. Nous prions ceux qui auraient été omis de la liste ci-dessous de bien vouloir nous pardonner : CELRL, DDAM 35, DDE Ille-et- Vilaine, DDE Manche, DIREN Basse-Normandie, DIREN Bretagne, DRE Bretagne, IFREMER, Maison de la baie du Mont Saint-Michel, MNHN/CNRS (Station marine de Dinard), EPHE/CNRS (Laboratoire de géomorphologie de Dinard), Université de La Rochelle, SHOM, etc...

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2008/rapport-4360.pdf
http://archimer.ifremer.fr/doc/00000/4360/

Éditeur(s) : HAL CCSD John Libbey Eurotext
Résumé : International audience
Environmental health risk assessment is commonly used in France for risk management purposes. The Methodology section of the "Société française de santé environnement" (French Society for Environmental Health) seeks to improve the utility and implementation of risk assessment in France. An initial operational objective is to make a list of short-, intermediate- and long-term improvements. This inventory is based in part on the experience and expertise of society members in this area and in part on their analysis of "Science and Decisions: Advancing Risk Assessment" (National Research Council 2009). In this paper, the Society recommends modifications in the indications for and use of risk assessments, during each of the four stages of the process: hazard identification and dose-response assessment, exposure assessment, risk characterization, and results interpretation. Some may be implemented now, while others need consensus building or research because of gaps in knowledge. Environmental health risk assessment must be understood as a decision tool for risk management in situations of uncertainly. Thus, appropriate linkage is required between decision making and assessment, and between the methods and the expected results.
L'évaluation des risques sanitaires est fréquemment utilisée en France dans les processus de décision en santé environnementale. La section " Méthodologie d'évaluation des risques sanitaires " de la Société française de santé environnement (SFSE) s'est donnée pour objectif de proposer des éléments de réflexion et des outils méthodologiques en vue d'améliorer l'utilité et les pratiques de l'évaluation des risques sanitaires. Un premier objectif opérationnel est l'inventaire des améliorations possibles à court, moyen et long termes à apporter à la démarche et à son utilisation. Ce travail s'est fondé, d'une part, sur la pratique et l'expertise des membres de la section, et, d'autre part, sur une lecture critique du rapport " Science and Decisions : Advancing Risk Assessment " publié en 2009 par le National Research Council et portant également sur les évolutions de la démarche. Dans cet article, la section restitue les conclusions de cet inventaire critique et propose un certain nombre d'améliorations en termes d'indications et d'utilisations de l'évaluation des risques sanitaires pour chacune des quatre étapes : identification des dangers et relation dose-réponse ; évaluation de l'exposition ; caractérisation des risques ; et interprétation des résultats. Certaines recommandations peuvent être mises en oeuvre immédiatement ; d'autres, en préalable à leur mise en oeuvre, nécessitent un consensus ou encore de la recherche car les connaissances manquent. En conclusion, la section insiste sur le fait que l'évaluation des risques sanitaires doit être comprise comme une aide à la décision en situation d'incertitude ; l'articulation entre le contexte décisionnel et l'évaluation, sa méthodologie et les résultats attendus est donc primordiale.
ISSN: 1635-0421

ineris-00963325
https://hal-ineris.archives-ouvertes.fr/ineris-00963325
DOI : 10.1684/ers.2011.0435
INERIS : EN-2012-016

Éditeur(s) : HAL CCSD Société nationale de protection de la nature
Résumé : International audience
The island of Moorea in French Polynesia is representative of a relatively well preserved small tropical oceanic island but both its terrestrial and marine ecosystems are currently under strong anthropogenic pressures. The terrestrial ecosystems are facing an increasing urbanization, and the destruction and modification of their natural habitats by cultivation and forestry plantations, accidental or intentional fires, and particularly by the invasion of alien plant and animal species. Coastal areas and reef ecosystems are threatened by shoreline artificialization, sedimentation due to soil erosion, increasing uses of marine and lagoon resources and frequency of coral bleaching events. A significant erosion of terrestrial and marine biodiversity is observed on the island since the last decades. In the context of the Land Management Plan (PGA) and Marine Area Management Plan (PGEM) recently set up in the island by local authorities, scientific surveys and inventories were made in 2006 in order to assess the status of terrestrial biodiversity (vascular plants) and marine biodiversity (reef fishes) and compare areas with different anthropogenic pressures. Studies conducted on the flora and the vegetation at low and middle elevation along altitudinal transects show that the plant invasion process is related to climatic and topographic factors, and species autoecology. The marine study aims to compare the protected areas with control areas in order to test the effectiveness of protection measures and to propose a streamlined monitoring protocol. A methodological study in both terrestrial and marine ecosystems was conducted in order to propose biodiversity indicators which are crucial for decision making in conservation and sustainable development of island biodiversity. We used Geographic Information System (GIS) as a fast and intuitive tool for mapping indicators and their variability. This methodological approach developed on the island of Moorea could be used as a model for other tropical islands
Moorea est une petite île océanique tropicale de la Polynésie française relativement bien préservée, mais dont les écosystèmes terrestres et marins sont actuellement soumis à de fortes pressions anthropiques. Le milieu terrestre est confronté à une urbanisation croissante, à la destruction ou à la modification des habitats naturels pour l’extension des cultures ou des plantations forestières, aux incendies volontaires ou accidentels, et particulièrement à l’invasion d’espèces végétales et animales introduites. Les zones côtières et les récifs coralliens sont menacés par de multiples perturbations telles que l’artificialisation des lignes de rivage, l’apport de sédiments dus à l’érosion des sols, l’augmentation des usages des ressources marines et lagonaires et de la fréquence des phénomènes de blanchissement du corail. Une érosion sensible de la biodiversité terrestre et marine de l’île est observée depuis les dernières décennies. Dans le cadre du Plan Général d’Aménagement (PGA) et du Plan de Gestion de l’Espace Maritime (PGEM) mis en place par les autorités locales, des inventaires scientifiques ont été réalisés en 2006 dans le but d’évaluer l’état de la biodiversité terrestre (plantes vasculaires) et marine (poissons récifaux) et de comparer des zones soumises à différentes perturbations. Les études réalisées sur la flore et la végétation de basse et moyenne altitude le long de transects altitudinaux montrent des processus d’invasion végétale différents en relation avec les facteurs climatiques, topographiques et autoécologiques des espèces. Les études en milieu marin visent à comparer des aires protégées à des aires témoins afin de suivre l’efficacité des mesures de gestion. La réflexion méthodologique menée parallèlement sur les deux écosystèmes a pour but d’illustrer différents indices de biodiversité nécessaires à la prise de décision en matière de conservation ou de développement durable de la biodiversité insulaire et de réaliser un état de référence pour établir un diagnostic sur l’état de la biodiversité. La représentation cartographique des indices à l’aide d’un SIG, illustrée dans cette étude avec la richesse spécifique terrestre et marine, permet une lecture intuitive et rapide de la variabilité de cet indice dont la restitution est basée sur une standardisation du nombre d’espèces. Cette approche méthodologique développée sur l’île de Moorea pourrait servir de modèle pour d’autres îles tropicales
EISSN: 2429-6422

hal-01306285
https://hal-univ-perp.archives-ouvertes.fr/hal-01306285

Résumé : Numerous invertebrates were collected during various scientific trawling surveys carried out in the Bay of Biscay (RESSGASC, EVHOE), and the adjacent areas between 1993 and 1995. The species captured by the same trawling methods used by professional fishermen represent only a fraction of the known invertebrate fauna in the Bay. In addition to an inventory of the species, a simple key allows easy access to faunistic groups. The species, some of which are economically interesting, form the subject of a short description and, for the most part, a colour illustration.
De nombreux invertébrés ont été collectés lors des diverses campagnes scientifiques de chalutage effectuées dans le golfe de Gascogne (RESSGASC, EVHOE) et les aires adjacentes, de 1993 à 1995. Les espèces capturées par les mêmes chaluts que ceux utilisés par les professionnels, ne représentent qu'une fraction de la faune d'invertébrés connue du Golfe. Outre l'inventaire des espèces, une clé simple permet d'accéder facilement jusqu'aux groupes faunistiques, les espèces, dont quelques unes sont économiquement intéressantes, font l'objet d'une courte description et pour la plupart, d'une illustration en couleur

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1997/rapport-709.pdf
http://archimer.ifremer.fr/doc/00000/709/