Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Chromatin modification enzymes are important regulators of gene expression and some are evolutionarily conserved from yeast to human. Saccharomyces cerevisiae is a major model organism for genome-wide studies that aim at the identification of target genes under the control of conserved epigenetic regulators. Ume6 interacts with the upstream repressor site 1 (URS1) and represses transcription by recruiting both the conserved histone deacetylase Rpd3 (through the co-repressor Sin3) and the chromatin-remodeling factor Isw2. Cells lacking Ume6 are defective in growth, stress response, and meiotic development. RNA profiling studies and in vivo protein-DNA binding assays identified mRNAs or transcript isoforms that are directly repressed by Ume6 in mitosis. However, a comprehensive understanding of the transcriptional alterations, which underlie the complex ume6Δ mutant phenotype during fermentation, respiration, or sporulation, is lacking. We report the protein-coding transcriptome of a diploid MAT a/α wild-type and ume6/ume6 mutant strains cultured in rich media with glucose or acetate as a carbon source, or sporulation-inducing medium. We distinguished direct from indirect effects on mRNA levels by combining GeneChip data with URS1 motif predictions and published high-throughput in vivo Ume6-DNA binding data. To gain insight into the molecular interactions between successive waves of Ume6-dependent meiotic genes, we integrated expression data with information on protein networks. Our work identifies novel Ume6 repressed genes during growth and development and reveals a strong effect of the carbon source on the derepression pattern of transcripts in growing and developmentally arrested ume6/ume6 mutant cells. Since yeast is a useful model organism for chromatin-mediated effects on gene expression, our results provide a rich source for further genetic and molecular biological work on the regulation of cell growth and cell differentiation in eukaryotes.
ISSN: 1617-4615

hal-01151619
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01151619
DOI : 10.1007/s00438-015-1051-5
PUBMED : 25957495

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
This paper presents a new balanced structural cross-section of the Jaca thrust-sheet-top basin of the southern Pyrenees combined with paleo-thermometry and apatite fission track (AFT) thermochronology data. The cross-section, based on field data and interpretation of industrial seismic reflection profiles, allows refinement of previous interpretations of the south-directed thrust system, involving the identification of new thrust faults, and of the kinematic relationships between basement and cover thrusts from the middle Eocene to the early Miocene. AFT analysis shows a southward decrease in the level of fission track resetting, from totally reset Paleozoic rocks and lower Eocene turbidites (indicative of heating to Tmax > ~120 °C), to partially reset middle Eocene turbidites and no/very weak resetting in the upper Eocene-lower Oligocene molasse (Tmax < ~60 °C). AFT results indicate a late Oligocene-early Miocene cooling event throughout the Axial Zone and Jaca Basin. Paleo-maximum temperatures determined by vitrinite reflectance measurements and Raman spectroscopy of carbonaceous material reach up to ~240 °C at the base of the turbidite succession. Inverse modelling of AFT and vitrinite reflectance data with the QTQt software for key samples show compatibility between vitrinite-derived Tmax and the AFT reset level for most of the samples. However, they also suggest that the highest temperatures determined in the lowermost turbidites correspond to a thermal anomaly rather than burial heating, possibly due to fluid circulation during thrust activity. From these results, we propose a new sequential restoration of the south Pyrenean thrust system propagation and related basin evolution.
ISSN: 0278-7407

insu-01312746
https://hal-insu.archives-ouvertes.fr/insu-01312746
https://hal-insu.archives-ouvertes.fr/insu-01312746/document
https://hal-insu.archives-ouvertes.fr/insu-01312746/file/Labaume_et_al-2016-Tectonics.pdf
DOI : 10.1002/2016TC004192

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Giant earthquake (moment magnitude M-w >= 8.5) forecasts for subduction zones have been empirically related to both tectonic stresses and geometrical irregularities along the subduction interface. Both of these controls have been suggested as able to tune the ability of rupture to propagate laterally and, in turn, exert an important control on giant earthquake generation. Here we test these hypotheses, and their combined influence, by compiling a dataset of trench fill thickness (a proxy for smoothing of subducting plate relief by sediment input into the subduction channel) and upper plate strain (a proxy for the tectonic stresses applied to the subduction interface) for 44 segments of the global subduction network. We statistically compare relationships between upper plate strain, trench sediment thickness and maximal earthquake magnitude. We find that the combination of both large trench fill (>= 1 km) and neutral upper plate strain explains spatial patterns of giant earthquake occurrence to a statistically significant degree. In fact, the concert of these two factors is more highly correlated with giant earthquake occurrence than either factor on its own. Less frequent giant earthquakes of lower magnitude are also possible at subduction zones with thinner trench fill and compressive upper plate strain. Extensional upper plate strain and trench fill < 0.5 km appear to be unfavorable conditions, as giant earthquakes have not been observed in these geodynamical environments during the last 111 years. Citation: Heuret, A., C. P. Conrad, F. Funiciello, S. Lallemand, and L. Sandri (2012), Relation between subduction megathrust earthquakes, trench sediment thickness and upper plate strain, Geophys. Res. Lett., 39, L05304, doi: 10.1029/2011GL050712.
ISSN: 0094-8276

hal-00745636
https://hal.archives-ouvertes.fr/hal-00745636
https://hal.archives-ouvertes.fr/hal-00745636/document
https://hal.archives-ouvertes.fr/hal-00745636/file/heuretGRL2012.pdf
DOI : 10.1029/2011GL050712

Éditeur(s) : HAL CCSD
Résumé : National audience
INTRODUCTION: Pulmonary arterial hypertension (PAH) is a severe complication of systemic sclerosis and detecting PAH efficiently remains challenging. The DETECT study has offered in 2013 a composite screening tool for PAH. The objective of our study was to compare the indication of right heart catheterisation (RHC) as suggested by the DETECT algorithm with the decisions of a multidisciplinary team. METHODS: This prospective monocentric non-interventional study consecutively included systemic sclerosis patients when data required to apply DETECT algorithm were available. We evaluate the number of RHC as requested by this algorithm and confronted it with the indications of RHC suggested by a multidisciplinary group blinded for the result of DETECT algorithm. RESULTS: In total, 117 systemic sclerosis patients were included. When DETECT algorithm was applied to all patients, RHC was suggested by this algorithm for 70 patients, whereas only 15 indications were required by the multidisciplinary group; among those patients only 7 had PAH. When DETECT algorithm was applied only to the 42 patients with DLCO<60% and disease duration of more than 3 years, RHC was suggested for 31 patients whereas only 13 were indicated by the multidisciplinary group; among those patients only 7 had PAH. CONCLUSION: The DETECT algorithm is able to efficiently detect all PAH patients finally diagnosed by our multidisciplinary team. However, it increases by 3 the number of RHC that should be performed.
La Revue de Médecine Interne

hal-01579606
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01579606
DOI : 10.1016/j.revmed.2017.04.005
PUBMED : 28545856

Éditeur(s) : HAL CCSD Publisher : Paris : Baillière [1980-. Latest Publisher : Paris : Elsevier
Résumé : National audience
Introduction Les monocytes sont constitués de populations cellulaires hétérogènes aux propriétés distinctes. Il est retrouvé une sur-représentation de la population monocytaire CD14+/CD16+ pro-inflammatoire au cours de certaines connectivites. Cette population monocytaire s’oppose aux monocytes CD14+/CD16– qui jouent un moindre rôle dans l’amplification de la réponse inflammatoire. Les monocytes et les macrophages pourraient jouer un rôle central dans les mécanismes de fibrose au cours de la sclérodermie systémique. L’association entre les manifestations cliniques de la sclérodermie systémique et les différentes populations monocytaires reste à préciser. L’objectif de cette étude « proof of concept »est d’évaluer l’association entre la population monocytaire CD14+/CD16+ et les manifestations cliniques de fibrose chez les patients sclérodermiques. Patients et méthodes Cinquante-cinq patients répondant aux critères ACR 2013 de sclérodermie systémique ont été inclus de manière consécutive de mars à juillet 2015. Les atteintes fibrosantes ont été évaluées simultanément selon les données du bilan viscéral annuel en centre de compétence : l’atteinte cutanée était évaluée cliniquement selon le score de Rodnan modifié, les patients étaient classés selon la classification de Leroy (atteinte cutanée diffuse, atteinte cutanée limitée, sine scleroderma). La présence d’une pneumopathie interstitielle diffuse était évaluée par TDM thoracique, son retentissement sur la fonction respiratoire était précisé par les épreuves fonctionnelles respiratoires (capacité pulmonaire totale, capacité vitale forcée, DLCO). La NFS réalisée le jour du bilan viscéral était traitée en hématoflow permettant de préciser les sous populations monocytaires en fonction de leur statut CD16+ ou CD16–. Les données cliniques étaient relevées en aveugle vis-à-vis des données de cytométrie en flux. Résultats 55 patients sclérodermiques ont été inclus. Le taux moyen de monocytes CD16+ était de 0,054 G/L (SD = 0,029). Les patients avec une atteinte cutanée diffuse avaient des taux significativement plus élevés de monocytes CD16+ (p = 0,021), alors que les taux de monocytes CD16–ne différaient pas entre les patients avec atteinte cutanée diffuse et cutanée limitée. Le score de Rodnan modifié était corrélé de manière significative avec le taux de monocytes CD16+ (R = 0,513, p < 0,001). Il existait une tendance à l’association entre des taux élevés de CD16+ et la présence d’une pneumopathie interstitielle diffuse détectée par TDM (p = 0,113). Il existait une corrélation négative significative (p < 0,05) entre les taux de CD16+ et les résultats des épreuves fonctionnelles respiratoires (capacité pulmonaire totale et DLCO), attestant d’une fonction respiratoire moins bonne chez les patients à taux plus élevés de monocytes CD16+. Il n’était pas retrouvé d’association entre les taux de CD16+ et les autres paramètres cliniques ou immunologiques. Discussion Cette étude « proof of concept » semble montrer une association entre des taux élevés de monocytes CD16+ et certains paramètres de gravité des atteintes fibrosantes de la maladie. En plus de leur association à la gravité des atteintes fibrosantes de la sclérodermie systémique, les taux de monocytes CD16+ pourraient également avoir un intérêt pronostique qui reste à évaluer. Des travaux in vitro ont montré que l’ajout de TGFb au milieu de culture cellulaire de monocytes induisait une augmentation de l’expression du CD16+ par ces monocytes. Les monocytes CD16+ sont également une source de production d’IL-1 bêta et de TNF alpha pro-inflammatoires. D’autres travaux in vitro ont très récemment démontré la plus grande capacité des monocytes CD16+ à se différencier préférentiellement en macrophages ayant également des propriétés pro-inflammatoires. La sous-population monocytaire CD16+ peut également être hiérarchisée en fonction de l’intensité d’expression du CD16. La place précise de ces différentes populations monocytaires dans la physiopathologie de la sclérodermie systémique reste encore à déterminer. Les liens ténus entre monocytes et macrophages, dont l’implication est maintenant reconnue au cours de la sclérodermie invitent à investiguer davantage le rôle possible du monocyte dans le cadre de cette maladie inflammatoire et fibrosante afin d’identifier d’éventuelles nouvelles cibles thérapeutiques ou marqueurs pronostiques. Conclusion Dans cette étude « proof of concept », sur un nombre restreint de patients atteints de sclérodermie systémique répondants aux critères ACR 2013, le taux de monocytes CD16+ semble corrélé avec les atteintes fibrosantes de la maladie, laissant supposer une implication possible de cette sous-population monocytaire dans la physiopathologie de cette connectivite
ISSN: 0248-8663

hal-01321851
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01321851
DOI : 10.1016/j.revmed.2016.04.253

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Are bisphenol A (BPA) and BPA analogs (BPA-A) safe for male human reproductive function? The endocrine function of human testes explants [assessed by measuring testosterone and insulin-like factor 3 (INSL3)] was impacted by exposure of the human adult testis explants to BPA/BPA-A. The few epidemiologic studies performed suggest that bisphenols have potential endocrine disruptive properties, but they did not identify clear and direct patterns of endocrine disruption. Adult human testis explants in culture were exposed to BPA and the analogs bisphenol F (BPF), bisphenol S (BPS), bisphenol E (BPE), bisphenol B (BPB) and bisphenol A diglycidyl ether (BADGE) at 10(-9)-10(-5) M for 24 or 48 h. Human adult testes were obtained from prostate cancer patients who had no hormone therapy, or from multiorgan donors. After ex vivo exposure to the investigated bisphenols, the measured outcomes were related to histopathology (gross morphology and germ cell viability determined by anti-caspase three immunohistochemistry), and the levels of testosterone, INSL3 and inhibin B were measured using immunoassays. The levels of mRNA encoding key enzymes of bisphenol biotransformation were investigated by quantitative PCR: UGT2B15 UDP (glucuronosyltransferase two family, polypeptide B15), GUSB (glucuronidase beta), SULT1A1 and 3 (sulfotransferase family 1 A member 1 and 3) and STS (steroid sulfatase). A significant dose-dependent inhibition was found between testosterone levels measured in the culture medium and concentrations of BPA (P = 0.00778 at 24 h and P = 0.0291 at 48 h), BPE (P = 0.039) and BPF (P = 0.00663). The observed BPA and BPA-A-induced inhibition of testosterone production varied according to duration of exposure and BPA/BPA-A concentrations. BPA (10(-9) M; P < 0.05), BPB (10(-9) M; P < 0.05), BPS (10(-9) and 10(-8) M; P < 0.05) and BADGE (10(-5) M; P < 0.05) increased Leydig cell INSL3 production. By contrast, BPE dose dependently inhibited INSL3 (P = 0.0372). Conversely, Sertoli cell function (inhibin B) and germ cell viability were not significantly affected by either bisphenols. N/A. Environmental compounds cannot be deliberately administered to men, justifying the use of an ex vivo approach. A relatively low number of testes samples were available for analysis (n = 3, except for testosterone secretion with n = 5). The active concentrations of BPA and BPA-A used in the study were higher than those found in human biological fluids. Under our experimental conditions, direct exposure to BPA or BPA-A can result in endocrine disturbance in the adult human testis.
ISSN: 0268-1161

hal-01578582
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01578582
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01578582/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01578582/file/Parallel%20assessment%20of%20the%20effects%20of%20bisphenol%20A_accepted.pdf
DOI : 10.1093/humrep/dex093

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: Environmental exposures, including dietary contaminants, may influence the developing immune system. This study assesses the association between maternal pre-parturition consumption of seafood and wheeze, eczema, and food allergy in preschool children. Fish and shellfish were studied separately as they differ according to their levels of omega-3 polyunsaturated fatty acids (which have anti-allergic properties) and their levels of contaminants. METHODS: The PELAGIE cohort included 3421 women recruited at the beginning of pregnancy. Maternal fish and shellfish intake was measured at inclusion by a food frequency questionnaire. Wheeze, eczema, and food allergy were evaluated by a questionnaire completed by the mother when the child was 2 years old (n = 1500). Examination of the associations between seafood intake and outcomes took major confounders into account. Complementary sensitivity analyses with multiple imputation enabled us to handle missing data, due mostly to attrition. RESULTS: Moderate maternal pre-parturition fish intake (1 to 4 times a month) was, at borderline significance, associated with a lower risk of wheeze (adjusted OR = 0.69 (0.45-1.05)) before age 2, compared with low intake (< once/month). This result was not, however, consistent: after multiple imputation, the adjusted OR was 0.86 (0.63-1.17). Shellfish intake at least once a month was associated with a higher risk of food allergy before age 2 (adjusted OR = 1.62 (1.11-2.37)) compared to low or no intake (< once/month). Multiple imputation confirmed this association (adjusted OR = 1.52 (1.05-2.21)). CONCLUSIONS: This study suggests that maternal pre-parturition shellfish consumption may increase the risk of food allergy. Further large-scale epidemiologic studies are needed to corroborate these results, identify the contaminants or components of shellfish responsible for the effects observed, determine the persistence of the associations seen at age 2, and investigate potential associations with health effects observable at later ages, such as allergic asthma.
ISSN: 1476-069X

Droits : info:eu-repo/semantics/OpenAccess
inserm-00926282
http://www.hal.inserm.fr/inserm-00926282
http://www.hal.inserm.fr/inserm-00926282/document
http://www.hal.inserm.fr/inserm-00926282/file/1476-069X-12-102.pdf
DOI : 10.1186/1476-069X-12-102

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Herbicides are generally the most extensively used of the pesticides applied to agricultural crops. However, the literature contains little evidence useful in assessing the potential sources of the general population's exposure to herbicides, including by residential proximity to crops.The objective of this study was to take advantage of data from the PELAGIE mother–child cohort to identify the main determinants of the body burden of exposure to the chloroacetanilide and triazine herbicides commonly used on corn crops in Brittany, France, before 2006. Urine samples from a randomly selected subcohort of women in the first trimester of pregnancy (n=579) were assayed for herbicide metabolites. The residential exposure resulting from proximity to corn crops was assessed with satellite-image-based scores combined with meteorological data. Data on diet, drinking tap water (from the public water supply), occupations, and household herbicide use were collected by questionnaires.Herbicides were quantified in 5.3% to 39.7% of urine samples. Alachlor and acetochlor were found most frequently in the urine of women living in rural areas. The presence of dealkylated triazine metabolites in urine samples was positively associated with residential proximity to corn crops (OR=1.38, 95% CI: 1.05–1.80). Urinary metabolites of both atrazine and dealkylated triazine were correlated with tap water consumption (OR=2.94, 1.09–7.90, and OR=1.82, 1.10–3.03, respectively); hydroxylated triazine metabolites were correlated with fish intake (OR=1.48, 1.09–1.99).This study reinforces previous results that suggest that environmental contamination resulting from agricultural activities may contribute to the general population's exposure to herbicides.
ISSN: 0160-4120

hal-01107546
https://hal.archives-ouvertes.fr/hal-01107546
DOI : 10.1016/j.envint.2013.10.010
PUBMED : 24246238

Éditeur(s) : HAL CCSD Thieme Publishing
Résumé : International audience
To determine the effect of triathlete performance level on the cardiorespiratory responses elicited by the cycle-run succession, eight regionally and nationally-ranked (Competitive) and five internationally-ranked (Elite) male triathletes underwent four successive laboratory trials: 1) an incremental treadmill test, 2) an incremental cycle test, 3) 30 min of cycling followed by 20 min of running (C-R), and 4) a 20-min control run (R) at the same speed as the run in C-R. Before and 10 min after the third and fourth trials the triathletes underwent lung function testing: spirometry and diffusing capacity testing for carbon monoxide (DL(CO)). During the C-R trial blood samples were drawn to measure venous lactate concentration. During all trials ventilatory data were collected every minute using an automated breath-by-breath system. The results showed that 1) the oxygen uptake (VO2) of post-cycling running versus running alone was similar for both groups; 2) the ventilatory responses (VE, VE/VO2, VE/VC02 and f) of C-R running versus R were significantly higher (P < 0.005) for the Competitive group; and 3) a significant decrease (P< 0.05) in DL(CO) was also noted after the C-R trial in the Competitive group but not in the Elite group. We concluded that 1) the ventilatory responses during a run subsequent to cycling may be related to the triathlete performance level, and 2) the C-R trial induced specific alterations in pulmonary function that may be associated with respiratory muscle alteration and exercise-induced hypoxemia in the Competitive triathletes.
ISSN: 0172-4622

hal-00720719
https://hal.univ-antilles.fr/hal-00720719

Éditeur(s) : HAL CCSD Elsevier
Résumé : Differentiation of the Earth's mantle and formation of continental and oceanic crust occur principally through partial melting and extraction of basaltic melt. Among the mantle rocks occurring at the Earth's surface, as tectonically-emplaced massifs, abyssal peridotites or xenoliths, the harzburgites (< 5% clinopyroxene) are widely considered as refractory mantle residues left after extraction of a basaltic component. In contrast, the most fertile lherzolites (15% clinopyroxene) are generally regarded as pristine mantle, only weakly affected by partial melting. In this paper we present new convergent structural and geochemical data from the Lherz massif, the type-locality of lherzolite, indicating that the lherzolites from Lherz do not represent pristine mantle. Detailed structural mapping clearly shows that the lherzolites are secondary rocks formed at the expense of the harzburgites. Variations of major, minor and trace elements through the harzburgite–lherzolite contacts indicate that the lherzolites were formed through a refertilization process involving interaction of refractory, lithospheric mantle with upwelling asthenospheric partial melts. Combined with previously published indications of refertilization in orogenic peridotites, our new observations in Lherz suggest that most lherzolite massifs represent secondary (refertilized) rather than pristine mantle. Together with geochemical data on mantle xenoliths, this indicates that melt transport and melt-rock reaction play a key role on the rejuvenation and erosion of the lithospheric mantle.
ISSN: 0012-821X

hal-00406433
https://hal.archives-ouvertes.fr/hal-00406433
DOI : 10.1016/j.epsl.2007.05.026

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The formation age of the Siberian cratonic mantle is not well established as yet. Re–Os data on various mantle-derived materials have shown that it contains Archaean components, but the reported Re-depletion ages show a broad variation range (3.4 to 1 Ga) and are commonly ≤ 2 Ga for peridotite xenoliths. We report Hf and Nd isotope data for cpx and garnet separated from nine refractory spinel and garnet peridotite xenoliths from the Udachnaya kimberlite. The cpx from low-opx spinel harzburgites show extremely high εHf values, from + 607 to + 2084, which testify to long-term evolution of these rocks with high Lu/Hf ratios, consistent with their residual origin and near absence of post-melting enrichments in the Lu–Hf system. Such high εHf values are unusual for cpx from other cratonic peridotites and are higher than those reported for depleted cpx in off-cratonic peridotites. The clinopyroxenes from low-opx spinel harzburgites yield Hf model ages from 1.9 to 1.7 Ga while the cpx from high-opx spinel harzburgites yield Hf model ages from 3.0 to 1.9 Ga. When plotted together, they define a Lu/Hf isochron with an age of 1.80 Ga, which we consider as a robust estimate of the formation age (melt extraction event) because it is obtained on residual rocks that show no evidence for HREE and Hf enrichments and because the model ages for three out of four individual samples are similar to each other. The cpx have high εNd of + 94 to + 123, which are inconsistent with their low Sm/NdPM of < 1 and yield no meaningful age estimates. The consistently high, positive εNd in these cpxs can be interpreted in terms of long-term evolution of refractory peridotites with high Sm/Nd, followed by relatively recent LREE enrichments.We infer that a significant part of the lithospheric mantle in the central Siberian craton may have been formed during a major event (or a series of events) at around 1.8 Ga. Older ages reported for the central Siberian craton may refer to less common materials from cratonic or other domains formed in the Archaean that were later incorporated into the cratonic roots. The transition from the “Archaean” to “modern” tectonic regimes in Siberia and possibly elsewhere may have taken place at 1.8–1.9 Ga rather than at ~ 2.5 Ga, i.e. in the second half of the Paleoproterozoic rather than at the Archaean–Proterozoic boundary, at which time the asthenospheric mantle became generally too cold to experience high-degree melting on a large scale. The ~ 1.8 Ga formation age of the Siberian cratonic mantle is coeval with that for a major part of the ancient continental crust in the central Siberian craton. The temporal crust–mantle links may be explained either by the generation of the initial source materials for continental crust in the same melting event that formed the residual peridotites or, alternatively, by subduction and melting of pre-existing proto-lithosphere destabilized by a major mantle upwelling that formed the residual mantle.
ISSN: 0009-2541

hal-01115519
https://hal.archives-ouvertes.fr/hal-01115519
DOI : 10.1016/j.chemgeo.2014.10.018

Éditeur(s) : HAL CCSD Springer Verlag (Germany) Springer Verlag
Résumé : International audience
We report here U-series and trace element data for an olivine-melilitite lava flow, erupted in 1957 in the Virunga volcanic field and known as the Mugogo eruption. Petrological and geochemical data show that the Mugogo magma represents a primary mantle melt, derived from a low degree of melting of a metasomatised mantle source. It is highly enriched in very incompatible trace elements (e.g. more than 300-fold compared to primitive mantle for Th), with a distinctly lower enrichment in Rb, Ba and Sr. The high Th/U and low (230Th/232Th) ratios (4.4 and 0.750, respectively, with a (230Th/238U) ratio of 1.09) are close to the values found for the Nyamuragira basanites. But the most striking feature is the very low (226Ra/230Th) ratio of 0.48, the lowest ever measured in a mafic volcanic rock. The most probable origin of this Ra deficit is the presence of phlogopite (having a high Ra partition coefficient) in the lithospheric mantle, either as a residual phase during low-degree isobaric melting (in batch-melting or a diffusion-controlled melting models), or in a phlogopite-bearing upper mantle through which the melt migrates and equilibrates (in an equilibrium porous flow model commonly used to describe adiabatic melting). The disequilibrium pattern (230Th) > (238U) > (210Pb) ≫ (226Ra), reversed compared to the pattern observed in the Oldoinyo Lengai natrocarbonatite, suggests that a carbonatite melt might have been involved to explain the Ra deficit. We thus discuss the possibility of an early separation of a Ra-enriched carbonate melt either from the olivine-melilitite melt or from a carbonated mantle source, followed by the production of a low-degree melt of olivine-melilitite composition, but the lack of available experimental, petrological and geochemical evidences makes this process somewhat speculative at present. Further studies of recent (<5 ky) olivine-melilitites are needed to check whether the large Ra deficit is a general characteristic of this type of magma that can be used to constrain models of its formation.
ISSN: 0010-7999

hal-01174173
https://hal.archives-ouvertes.fr/hal-01174173
DOI : 10.1007/s00410-015-1124-9

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
The Ama Drime range located at the transition between the high Himalayan range and south Tibet is a N-S active horst that offsets the South Tibetan Detachment System (STDS). Within the horst, a paragneissic unit, possibly attributed to the upper Himalayan crystalline series, overly the lower Himalayan crystalline series Ama Drime orthogneissic unit containing large metabasite layers and pods that have experienced pressure >= 1.4 GPa. Combining structural analysis with new and published pressure-temperature (P-T) estimates as well as U-Th/Pb, Ar-39/Ar-40 and (U-Th)/He ages, the P-T-deformation-time (P-T-D-t) paths of the main units within and on both sides of the horst are reconstructed. They imply that N-S normal faults initiated prior to 11 Ma and have accounted for a total exhumation <= 0.6 GPa (22 km) that probably occurred in two phases: the first one until similar to 9 Ma and the second one since 6 to 4 Ma at a rate of similar to 1 mm/yr. In the Ama Drime unit, 1 to 1.3 GPa (37 to 48 km) of exhumation occurred after partial melting since similar to 30 Ma until similar to 13 Ma, above the Main Central Trust (MCT) and below the STDS when these two fault systems were active together. The switch from E-W (STDS) to N-S (Ama Drime horst) normal faulting between 13 and 12 Ma occurs at the time of propagation of thrusting from the MCT to the Main Boundary Thrust. These data are in favor of a wedge extrusion or thrust system rather than a crustal flow model for the building of the Himalaya. We propose that the kinematics of south Tibet Cenozoic extension phases is fundamentally driven by the direction and rate of India underthrusting.
ISSN: 0278-7407

hal-00486405
https://hal.archives-ouvertes.fr/hal-00486405
DOI : 10.1029/2009TC002551

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is < 2000 mm yr(-1) (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall < 2000 mm yr(-1).
ISSN: 1726-4170

hal-01557759
https://hal.univ-lorraine.fr/hal-01557759
https://hal.univ-lorraine.fr/hal-01557759/document
https://hal.univ-lorraine.fr/hal-01557759/file/bg-13-2537-2016.pdf
DOI : 10.5194/bg-13-2537-2016

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Two genome-wide association studies (GWASs) recently highlighted the HLA-DRA and HLA-DRB5 genes as associated with Parkinson disease (PD). However, because HLA-DRA displays a low level of polymorphisms and HLA-DRB5 is only present in approximately 20% of the population, these findings are difficult to interpret. Our aims were: (1) to replicate and investigate in greater detail the association between PD and the HLA-DR region; (2) to identify PD-associated HLA alleles; and (3) to perform a meta-analysis of our top finding. As part of 2 French population-based case-control studies of PD including highly ethnically homogeneous participants, we investigated the association between PD and 51 Single-nucleotide polymorphisms (SNPs) in the HLA-DR region. HLA-DRB1 alleles were imputed using the HLA(*) IMP software. HLA typing was performed in a subsample of the participants. We performed a meta-analysis of our top finding based on 4 GWAS data sets. Among 499 cases and 1123 controls, after correction for multiple testing, we found an association with rs660895 (OR/minor allele, 0.70; 95% CI, 0.57-0.87) within the HLA-DRB1 gene, which encodes the most polymorphic HLA-DR chain (DRβ). A meta-analysis (7996 cases, 36455 controls) confirmed this association (OR, 0.86; 95% CI, 0.82-0.91; P < .0001). SNP-based imputation of HLA alleles showed an inverse association between PD and the HLA-DRB1(*) 04 allele. We replicated an association between PD and the HLA-DR region and provided further insight into the loci and alleles involved. The highly polymorphic HLA-DRB1 locus contains rs660895, which represents a more legitimate candidate than previous ones. Our finding is in agreement with the hypothesis of an immune component in PD pathophysiology. © 2012 Movement Disorder Society.
ISSN: 0885-3185

inserm-00721562
http://www.hal.inserm.fr/inserm-00721562
http://www.hal.inserm.fr/inserm-00721562/document
http://www.hal.inserm.fr/inserm-00721562/file/Table1.pdf
http://www.hal.inserm.fr/inserm-00721562/file/Table2.pdf

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
We recover the Holocene earthquake history of seven seismogenic normal faults in the Fucino system, central Italy. We collected 800 samples from the well-preserved limestone scarps of the faults and modeled their 36Cl concentrations to derive their seismic exhumation history. We found that > 30 large earthquakes broke the faults in synchrony over the last 12 ka. The seven faults released strain at the same periods of time, 12-9 ka, 5-3 ka, and 1.5-1 ka. On all faults, the strain accumulation and release occurred in 3-6 ka supercycles, each included a 3-5 ka phase of slow (≤ 0.5-2 mm/yr) strain accumulation in relative quiescence, followed by a cluster of three to four large earthquakes or earthquake sequences that released most of the strain in < 1-2 ka. The large earthquakes repeated every 0.5 ± 0.3 ka during the paroxysmal phases and every 4.3 ± 0.9 ka between those phases. Earthquakes on the northern faults produced twice larger surface slips (~ 2 m) and had larger magnitudes (Mw 6.2-6.7) than those on the southern faults. On most faults, the relative strain level was found to control the amount of slip and the time of occurrence of the next large earthquake. Faults entered a phase of clustered activity once they had reached a specific relative strain threshold. The Tre Monti fault is identified as the most prone to break over the next century. Our data document earthquake synchrony and clustering at a broader space and time scale than has been reported to date.
ISSN: 0148-0227

hal-00903460
https://hal.archives-ouvertes.fr/hal-00903460
DOI : 10.1002/jgrb.50299

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The origin of plate tectonics is one of the most fundamental issues in earth and planetary sciences. Laboratory experiments indicate that the viscosity of silicate rocks is so strongly temperature-dependent that the entire surface of the Earth should be one immobile rigid plate. The rheology of oceanic lithosphere is, however, still poorly understood, and there exist few constraints on the temperature dependency of viscosity on the field scale. Here we report a new kind of observational constraint based on the geoid along oceanic fracture zones. We identify a large number of conspicuous small-scale geoid anomalies, which cannot be explained by the standard evolution model of oceanic lithosphere, and estimate their source density perturbations using a new Bayesian inversion method. Our results suggest that they are caused most likely by small-scale convection involving temperature perturbations of ∼300 K±100 K∼300 K±100 K. Such thermal contrast requires the activation energy of mantle viscosity to be as low as View the MathML source100±50 kJmol−1 in case of diffusion creep, and View the MathML source225±112 kJmol−1 in case of dislocation creep, substantially reducing the thickness of the stiffest part of oceanic lithosphere. Oceanic lithosphere may thus be broken and bent much more easily than previously thought, facilitating the operation of plate tectonics.
ISSN: 0012-821X

hal-01467827
https://hal.archives-ouvertes.fr/hal-01467827
DOI : 10.1016/j.epsl.2016.05.027

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
BACKGROUND: African Americans with head and neck squamous cell carcinoma (HNSCC) have a lower survival rate than whites. This study investigated the functional importance of ancestry-informative single-nucleotide polymorphisms (SNPs) in HNSCC and also examined the effect of functionally important genetic elements on racial disparities in HNSCC survival. METHODS: Ancestry-informative SNPs, RNA sequencing, methylation, and copy number variation data for 316 oral cavity and laryngeal cancer patients were analyzed across 178 DNA repair genes. The results of expression quantitative trait locus (eQTL) analyses were also replicated with a Gene Expression Omnibus (GEO) data set. The effects of eQTLs on overall survival (OS) and disease-free survival (DFS) were evaluated. RESULTS: Five ancestry-related SNPs were identified as cis-eQTLs in the DNA polymerase beta (POLB) gene (false discovery rate [FDR]<0.01). The homozygous/heterozygous genotypes containing the African allele showed higher POLB expression than the homozygous white allele genotype (P<.001). A replication study using a GEO data set validated all 5 eQTLs and also showed a statistically significant difference in POLB expression based on genetic ancestry (P=.002). An association was observed between these eQTLs and OS (P<.037; FDR<0.0363) as well as DFS (P=.018 to.0629; FDR<0.079) for oral cavity and laryngeal cancer patients treated with platinum-based chemotherapy and/or radiotherapy. Genotypes containing the African allele were associated with poor OS/DFS in comparison with homozygous genotypes harboring the white allele. CONCLUSIONS: Analyses show that ancestry-related alleles could act as eQTLs in HNSCC and support the association of ancestry-related genetic factors with survival disparities in patients diagnosed with oral cavity and laryngeal cancer. (C) 2016 American Cancer Society.
ISSN: 0008-543X

hal-01519253
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01519253
DOI : 10.1002/cncr.30457
PUBMED : 27906459

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We performed torsional deformation experiments on pre-hydrated fine-grained olivine aggregates using an innovative experimental assembly to investigate water weakening in mantle rocks at high shear strains. San Carlos olivine powder was cold-pressed and then hot-pressed under hydrous conditions, producing aggregates with average grain sizes of 7 or 15 μm. Deformation experiments were performed in a high-resolution gas-medium apparatus equipped with a torsional actuator, under a confining pressure of 300 MPa, a temperature of 1200 °C, and constant shear strain rates ranging from 8 × 10−5 to 1.4 × 10−4 s−1. Maximum shear stresses range from 150 to 195 MPa. These values are 30% lower relative to those determined in previous torsion experiments on dry, fined-grained dunites under similar conditions. Textures and microstructures of the starting and deformed specimens were characterized by scanning and transmission electron microscopy. All deformed aggregates exhibit a shape-preferred orientation marking a foliation and lineation, as well as a reduction in mean grain size from 15 μm down to 3-4 μm due to dynamic recrystallization. Olivine crystallographic fabrics developed rapidly (γ < 0.1), but their strength, characterized by the J-index, is low compared to naturally deformed peridotites or to polycrystalline olivine deformed at similar finite shear strains under dry conditions. The crystallographic fabrics are consistent with deformation by a dislocation accommodated creep mechanism with activation of multiple {0 k l}[1 0 0] systems, among which the (0 1 0)[1 0 0] slip system is dominant, and minor participation of the (0 1 0)[0 0 1] slip system. Transmission electron microscopy confirmed the occurrence of dislocations with [1 0 0] and [0 0 1] Burgers vectors in most grains. Analysis of unpolarized infrared spectra indicates that hydrogen concentration in the olivine lattice is below the saturation level of 18 ppm wt H2O, which is similar to those typically observed in spinel-bearing peridotite xenoliths, and also provide evidence for water-rich inter-granular material trapped in pores and grain boundaries. Seismic properties computed from the CPO observations correspond to those most commonly observed in naturally deformed mantle peridotites with fast P-wave propagation and S-wave polarization subparallel to the shear direction. These torsion experiments on fine-grained olivine polycrystals under hydrous conditions indicate that water weakening under lithospheric conditions is linked to various defects with hydrogen in the olivine structure, as well as with water-derived species in grain boundaries or pores.
ISSN: 0031-9201

hal-00745170
https://hal.archives-ouvertes.fr/hal-00745170
DOI : 10.1016/j.pepi.2012.05.001

Éditeur(s) : HAL CCSD
Résumé : International audience
The porosity (from values of <1% up to more than 50%, with a mean value of 36.5%) and permeability (from very low values to 20.4 D, with a mean value around 800 mD) of 38 plugs, with a diameter 40 mm, have been measured. These plugs were taken approximately every 1.5 m along a 100 m-long core, sampling a series of reefal carbonate platform lithofacies. A non-unique relationship between porosity and permeability is obtained. In addition, the porosity was measured from processing X-ray micro-tomography images with resolutions ranging from 0.42 to 190.0 µm and sampling volumes ranging from less than 1 µm3 to few cm3. Depending on the structure of the pore network, the computed porosity is, in some cases, controlled by the X-ray image resolution and the sampled volume. While high resolution is required to image micro-porous material, large samples with lower resolution images are necessary for identifying distributed vugs and millimetre-scale structures. This study shows that multi-resolution X-ray micro-tomography is an effective tool for characterizing the multi-scale pore structure of carbonate rocks and understanding how it may control key petrophysical parameters such as porosity and permeability.
Geological Society Special Publication

hal-01174157
https://hal.archives-ouvertes.fr/hal-01174157
DOI : 10.1144/SP406.12