Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
The Lanzo peridotite massif is a fragment of oceanic lithosphere generated in an ocean-continent transition context and eclogitized during alpine collision. Despite the subduction history, the massif has preserved its sedimentary oceanic cover, suggesting that it may have preserved its oceanic structure. It is an exceptional case for studying the evolution of a fragment of the lithosphere from its oceanization to its subduction and then exhumation. We present a field and petrological study retracing the different serpentinization episodes and their impact on the massif structure. The Lanzo massif is composed of slightly serpentinized peridotites (<20% serpentinization) surrounded by an envelope of foliated serpentinites (100% serpentinization) bordered by oceanic metabasalts and metasedimentary rocks. The limit between peridotites and serpentinites defines the front of serpentinization. This limit is sharp: it is marked by the presence of massive serpentinites (80% serpentinization) and, locally, by dykes of metagabbros and mylonitic gabbros. The deformation of these gabbros is contemporaneous with the emplacement of the magma. The presence of early lizardite in the peridotites testifies that serpentinization began during the oceanization, which is confirmed by the presence of meta-ophicarbonates bordering the foliated serpentinite envelope. Two additional generations of serpentine occur in the ultramafic rocks. The first is a prograde antigorite that partially replaced the lizardite and the relict primary minerals of the peridotite during subduction, indicating that serpentinization is an active process at the ridge and in the subduction zone. Locally, this episode is followed by the deserpentinization of antigorite at peak P-T (estimated in eclogitized metagabbros at 2-2.5 GPa and 550-620 °C): it is marked by the crystallization of secondary olivine associated with chlorite and/or antigorite and of clinopyroxene, amphibole and chlorite assemblages. A second antigorite formed during exhumation partially to completely obliterating previous textures in the massive and foliated serpentinites. Serpentinites are an important component of the oceanic lithosphere generated in slow to ultraslow spreading settings, and in these settings, there is a serpentinization gradient with depth in the upper mantle. The seismic Moho limit could correspond to a serpentinization front affecting the mantle. This partially serpentinized zone constitutes a less competent level where, during subduction and exhumation, deformation and fluid circulation are localized. In this zone, the reaction kinetics are increased and the later steps of serpentinization obliterate the evidence of this progressive zone of serpentinization. In the Lanzo massif, this zone fully recrystallized into serpentinite during alpine subduction and collision. Thus, the serpentinite envelope represents the oceanic crust as defined by geophysicists, and the sharp front of serpentinization corresponds to an eclogitized seismic palaeo-Moho.
ISSN: 0263-4929

hal-00823051
https://hal.archives-ouvertes.fr/hal-00823051
DOI : 10.1111/jmg.12008

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
We explore the tectono-magmatic processes in the western West Philippine Basin, Philippine Sea Plate, using bathymetric data acquired in 2003 and 2004. The northwestern part of the basin formed through a series of northwestward propagating rifts. We identify at least five sequences of propagating rifts, probably triggered by mantle flow away from the mantle thermal anomaly that is responsible for the origin of the Benham and Urdenata plateaus. Gravitational forces caused by along-axis topographic gradient and a ∼30° ridge reorientation appear to also be driving the rift propagations. The along-axis mantle flow appears to be reduced and deflected along the Luzon-Okinawa fracture zone, because the spreading system remained stable west of this major fault zone. North-east of the Benham plateau, a left-lateral fracture zone has turned into a NE–SW-trending spreading axis. As a result, a microplate developed at the triple junction.
ISSN: 0954-4879

insu-00304360
https://hal-insu.archives-ouvertes.fr/insu-00304360
DOI : 10.1111/j.1365-3121.2008.00824.x

Éditeur(s) : HAL CCSD Wiley
Résumé : The evolutionary potential of long-lived species, such as forest trees, is fundamental for their local persistence under climate change (CC). Genome–environment association (GEA) analyses reveal if species in heterogeneous environments at the regional scale are under differential selection resulting in populations with potential preadaptation to CC within this area. In 79 natural [i]Fagus sylvatica[/i] populations, neutral genetic patterns were characterized using 12 simple sequence repeat (SSR) markers, and genomic variation (144 single nucleotide polymorphisms (SNPs) out of 52 candidate genes) was related to 87 environmental predictors in the latent factor mixed model, logistic regressions and isolation by distance/environmental (IBD/IBE) tests. SSR diversity revealed relatedness at up to 150m intertree distance but an absence of large-scale spatial genetic structure and IBE. In the GEA analyses, 16 SNPs in 10 genes responded to one or several environmental predictors and IBE, corrected for IBD, was confirmed. The GEA often reflected the proposed gene functions, including indications for adaptation to water availability and temperature. Genomic divergence and the lack of large-scale neutral genetic patterns suggest that gene flow allows the spread of advantageous alleles in adaptive genes. Thereby, adaptation processes are likely to take place in species occurring in heterogeneous environments, which might reduce their regional extinction risk under CC
ISSN: 0028-646X

hal-01309135
https://hal.archives-ouvertes.fr/hal-01309135
PRODINRA : 343710
DOI : 10.1111/nph.13809

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The identification of a large OIB-type volcanic sequence on top of an obducted nappe in the Lesser Caucaus of Armenia helps us explain the obduction processes in the Caucasus region that are related to dramatic change in the global tectonics of the Tethyan region in the late Lower Cretaceous. The ophiolitic nappe preserves three distinct magmatic series, obducted in a single tectonic slice over the South Armenian Block during the Coniacian-Santonian (88-83 Ma), the same time as the Oman ophiolite. Similar geological, petrological, geochemical and age features for various Armenian ophiolitic massifs (Sevan, Stepanavan, and Vedi) argue for the presence of a single large obducted ophiolite unit. The ophiolite, shows evidence for a slow-spreading oceanic environment in Lower to Middle Jurassic. Serpentinites, gabbros and plagiogranites were exhumed by normal faults, and covered by radiolarites. Few pillow-lava flows have infilled the rift grabens. The ophiolite lavas have hybrid geochemical composition intermediate between Arc and MORB signatures: (La/Yb)(N) = 0.6-0.9: (Nb/Th)(N) = 0.17-0.57; (Nd-143/Nd-144)(i) = 0.51273-0.51291; (Sr-87/Sr-86)(i) = 0.70370-0.70565; (Pb-207/Pb-204)(i) = 15.4587-15.5411; (Pb-208/Pb-204)(i) = 37.4053-38.2336; (Pb-206/Pb-204)(i) = 17.9195-18.4594. These compositions suggest they were probably formed in a back-arc basin by melting of a shallow asthenosphere source contaminated by a deeper mantle source modified by subducted slab-derived products. Sr-87/Sr-86 ratios and petrological evidence show that these lavas have been intensely altered by mid-oceanic hydrothermalism as well as by serpentinites, which are interpreted as exhumed mantle peridotites. The gabbros have almost the same geochemical composition as related pillow-lavas: (La/Yb)(N) = 0.2-2.3; (Nb/Th)(N) = 0.1-2.8; (Nd-143/Nd-144)(i) = 0.51264-0.51276: (Sr-87/Sr-86)(i) = 0.70386-0.70557; (Pb-207/Pb-204)(i) = 15.4888-15.5391; (Pb-208/Pb-204)(i) = 37.2729-37.8713; (Pb-206/Pb-204)(i) = 17.6296-17.9683. Plagiogranites show major and trace element features similar to other Neo-Tethyan plagiogranites (La/Yb)(N) = 1.10-7.92; (Nb/Th)(N) = 0.10-0.94; but display a less radiogenic Nd isotopic composition than basalts [(Nd-143/Nd-144)(i) = 0.51263] and more radiogenic (Sr-87/Sr-86)(i) ratios. This oceanic crust sequence is covered by variable thicknesses of unaltered pillowed OIB alkaline lavas emplaced in marine conditions. Ar-40/Ar-39 dating of a single-grain amphibole phenocryst provides a Lower Cretaceous age of 117.3 +/- 0.9 Ma, which confirms a distinct formation age of the OIB lavas. The geochemical composition of these alkaline lavas is similar to plateau-lavas [(La/Yb)(N) = 6-14; (Nb/Th)(N) = 0.23-0.76; (Nd-143/Nd-144)(i) = 0.51262-0.51271; (Sr-87/Sr-86)(i) = 0.70338-0.70551; (Pb-207/Pb-204)(i) = 15.5439-15.6158; (Pb-208/Pb-204)(i) = 38.3724-39.3623; (Pb-206/Pb-204)(i) = 18.4024-19.6744].;They have significantly more radiogenic lead isotopic compositions than phiolitic rocks, and fit the geochemical compositions of hot-spot derived lavas mixed with various proportions of oceanic mantle. In addition, this oceanic + plateau sequence is covered by Upper Cretaceous calc-alkaline lavas: (La/Yb)(N) = 2.07-2.31; (Nb/Th)(N) = 0.08-0.15; (Nd-144/Nd-143)(i) = 0.51271-0.51282; (Sr-117/Sr-116)(i) = 0.70452-0.70478), which were likely formed in a supra-subduction zone environment. During the late Lower to early Upper Cretaceous period, hot-spot related magmatism related to plateau events may have led to significant crustal thickening in various zones of the Middle-eastern Neotethys. These processes have likely hindered subduction of some of the hot and thickened oceanic crust segments, and allowed them to be obducted over small continental blocks such as the South Armenian Block.
ISSN: 0024-4937

hal-00443855
https://hal.archives-ouvertes.fr/hal-00443855
DOI : 10.1016/j.lithos.2009.02.006

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Oman ophiolite, a fossil fast-spreading oceanic ridge had a melt lens perched on top of the magma chamber wherein the gabbro unit was crystallizing. In ophiolites, this melt lens is reduced to a horizon that has been identified in the field. The gabbros that subsided from the lens horizon and drifted out of the magma chamber, while developing a steep magmatic foliation, provide insights into the active melt lens processes. A gabbro, sampled right below the horizon where the lens closed, has virtually not subsided and it offers a direct glance at the floor of the lens. Below, the deeper the gabbros are sampled, the more they have subsided before drifting out of the magma chamber, and the closer they derive from the center of the lens floor. Cross sections in these gabbros record successive events occurring within the lens. In particular, anorthosite layers and lenses that are interlayered within the foliated gabbros record the intrusion of a new melt where plagioclase is the first mineral to crystallize on liquidus. Detailed mapping of anorthosite swarms suggest that melt intrusions are massive, lasting less than 4 yr and that their frequency is similar to 100 yr. Their large volume controls the stability of melt lenses. A new melt surge induces rapid and large inflation of the lens. Melt lens deflation follows, that is due to the ongoing process of crustal accretion both in the gabbro unit by continuous subsidence of a thick gabbroic mush from the lens floor, and in the lid above the lens roof by sheeted dike intrusions feeding basalt extrusions at the higher frequency of similar to 10 yr.
ISSN: 0012-821X

hal-00617444
https://hal.archives-ouvertes.fr/hal-00617444
DOI : 10.1016/j.epsl.2011.01.029

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
In this paper we investigate finite-frequency effects in crustal tomography. We developed an inversion procedure based on an exact numerical computation of the sensitivity kernels. In this approach we compute the 3D travel-time sensitivity kernels by using (1) graph theory and an additional bending to estimate accurately both rays and travel-times between source/receiver and diffraction points and (2) paraxial ray theory to estimate the amplitude along theses rays. We invert both the velocity and the hypocentre parameters, using these so-called banana-doughnut kernels and the LSQR iterative solver. We compare the ray-theoretical and the finite-frequency tomography to image the intermediate structures beneath the Gulf of Corinth (Greece), which has long been recognized as the most active continental rifting zone in the Mediterranean region. Our dataset consists of 451 local events with 9233 P- firstarrival times recorded in the western part of the Gulf (Aigion area) in the framework of the 3F-Corinth European project. Previous tomographic images showed a complex velocity crustal model and a low-dip surface that may accommodate the deformation. Accurate velocity models will help to better constrain the rifting process, which is still a subject of debate. The main results of this study show that finite-frequency tomography improves crustal tomographic images by providing better resolved images of the 3D complicated velocity structure. Because the kernels spread the information over a volume, finite-frequency tomography results in a sharpening of layer boundaries as we observed for the shallower part of the crust (down to 5 km depth) beneath the Gulf of Corinth.
ISSN: 0016-8025

insu-00354702
https://hal-insu.archives-ouvertes.fr/insu-00354702
DOI : 10.1111/j.1365-2478.2007.00683.x

Éditeur(s) : Elsevier
Résumé : The main feature of the Congo-Angola margin in the Gulf of Guinea is the Congo (ex-Zaire) deep-sea fan composed of a submarine canyon directly connected to the Congo River, a channel and a [sediment] lobe area. During the multi-disciplinary programme called BIOZAIRE conducted by Ifremer from 2000 to 2005, two CTD-O2 sections with discrete water column samples were performed (BIOZAIRE3 cruise: 2003-2004) to study the influence of the Congo River discharges, both in the surface layer and in the deep and near-bottom layers. The surface layer water is greatly diluted with river water that has a heavy particle load. The deep layer is affected by episodic turbidity currents that flow in the deep Congo channel and reach deep areas far from the coast. Previous studies revealed deep anomalies in oxygen (deficit) and nutrient (excess) concentrations at not, vert, similar4000 m depth and assumed that they resulted from mineralisation of the particulate organic matter from the Congo River. The BIOZAIRE3 sections were designed to explore these phenomena in more detail near the Congo channel. Oxygen and nutrients were measured as well as additional parameters, including stable isotopes of oxygen and carbon, dissolved inorganic carbon and pH. For the surface layer, the effect of the Congo River was studied with reference to salinity. Deviations from the theoretical dilution of various inorganic solutes suggested the occurrence of mineralisation and consumption processes. For the deep layer, the network of CTD-O2 stations gave a more detailed description of the deep anomalies than in previous studies. From the east-west section, anomalies appeared on the bottom at 4000 m depth and became slightly shallower when they spread to the west. They were also present north and south on the bottom along the 4000 m isobath. In these deep waters, the decrease in the o13C values of dissolved inorganic carbon confirmed that the mineralisation of organic matter plays a role in generating these anomalies. The location of the origin of this deep anomaly is debated. Here, arguments are given in favour of mineralisation of the particulate organic matter input that overflows from the Congo channel at not, vert, similar4000 m depth during turbidity current events. Other authors suggest that this input comes from downslope particle transport. Anomalies of the same origin, but weaker, also occurred deeper on the Congo lobe, where the Congo channel ends, but with a significant pH decrease on the bottom which was not seen at 4000 m depth.
Deep Sea Research Part II: Topical Studies in Oceanography (0967-0645) (Elsevier), 2009-11 , Vol. 56 , N. 23 , P. 2183-2196

Droits : 2009 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/2009/publication-6737.pdf
DOI:10.1016/j.dsr2.2009.04.002
http://archimer.ifremer.fr/doc/00000/6737/

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
The ODP/IODP multileg campaign at ODP Site 1256 (Cocos plate, eastern equatorial Pacific) provides the first continuous in situ sampling of fast spreading ocean crust from the extrusive lavas, through the sheeted dikes and down into the uppermost gabbros. This paper focuses on a detailed petrographic and microanalytical investigation of the gabbro section drilled during IODP Expedition 312. The marked patchy and spotty features that can be observed in many Hole 1256D gabbros is mostly due to a close association of two different lithological domains in variable amounts: (1) subophitic domains and (2) a granular matrix. Major and trace element mineral compositions, geothermometry, and petrological modeling suggest that subophitic and granular domains follow one single magma evolution trend formed by in situ fractionation. The subophitic domains correspond to the relative primitive, high-temperature end-member, compositionally similar to the basalts and dikes from the extrusive unit upsection, while the granular domains fit with a magma evolution by crystal fractionation to lower temperatures, up to a degree of crystallization of similar to 80%. Our results support the following scenario for the fossilization of the axial melt lens at ODP Site 1256: relatively primitive MORB melts under near-liquidus conditions fill the melt lens and feed the upper, extrusive crust. Near the melt lens-sheeted dike boundary at lower temperatures, crystallization starts with first plagioclase before clinopyroxene in a mushy zone forming the subophitic domains. At decreasing temperatures, the subophitic domains continue to crystallize, finally forming a well-connected framework. Evolved, residual melt is finally trapped within the subophitic network, crystallizing at near-solidus conditions to the granular matrix. Another important textural feature in Hole 1256D gabbros is the presence of microgranular domains which are interpreted as relics of stoped/assimilated sheeted dikes (transformed to "granoblastic dikes" by contact metamorphism). All these different domains can be observed in close association, often at the thin section scale, demonstrating the extremely complex petrological record of combined crystallization/assimilation processes ongoing in the axial melt lens. Very similar gabbros with a marked spotty/patchy appearance, and bearing the same close association of lithological domains as observed at Site 1256, are known in the so-called "varitextured gabbro" unit from the Oman Ophiolite located at the same structural level, between cumulate gabbros and granoblastic dikes. The close petrological similarity of the gabbro/dike transition between both IODP Hole 1256D and the Oman ophiolite suggests that in situ fractionation and dike assimilation/contamination are major magmatic processes controlling the dynamics and fossilization of the axial melt lens at fast spreading oceanic ridges.
ISSN: 1525-2027

hal-00644798
https://hal.archives-ouvertes.fr/hal-00644798
DOI : 10.1029/2011GC003655

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
In this paper, we present an original and formal framework, the D2SNet model designed to combine both the social network evolution and the diffusion dynamics among individuals. We have conducted experiments on three social networks that show identical characteristics as real social networks. A formal definition of the model is provided and we describe its implementation in a simulation tool. We represent human behaviors and information dissemination strategies by standard and synthetic scheme. In a first step, we study the impact of network growing strategies only and we highlight important parameters such as the evolution speed and mainly the kind of strategies that favour or not the spread. Then we study a more complete evolution strategy that involves link creation and deletion. We provide a deep analysis on the impact of each parameter such as evolution speed, creation and deletion probabilities and dynamic human behaviors on the diffusion amplitude and coverage. Our study gives a novel and useful insight in the diffusion process in a dynamic context.
ISSN: 0747-5632

hal-00786164
https://hal.archives-ouvertes.fr/hal-00786164
DOI : 10.1016/j.chb.2012.06.004

Éditeur(s) : Public Library Science
Résumé : Transposable elements are major constituents of eukaryote genomes and have a great impact on genome structure and stability. They can contribute to the genetic diversity and evolution of organisms. Knowledge of their distribution among several genomes is an essential condition to study their dynamics and to better understand their role in species evolution. LTR-retrotransposons have been reported in many diverse eukaryote species, describing a ubiquitous distribution. Given their abundance, diversity and their extended ranges in C-values, environment and life styles, crustaceans are a great taxon to investigate the genomic component of adaptation and its possible relationships with TEs. However, crustaceans have been greatly underrepresented in transposable element studies. Using both degenerate PCR and in silico approaches, we have identified 35 Copia and 46 Gypsy families in 15 and 18 crustacean species, respectively. In particular, we characterized several full-length elements from the shrimp Rimicaris exoculata that is listed as a model organism from hydrothermal vents. Phylogenic analyses show that Copia and Gypsy retrotransposons likely present two opposite dynamics within crustaceans. The Gypsy elements appear relatively frequent and diverse whereas Copia are much more homogeneous, as 29 of them belong to the single GalEa clade, and species-or lineage-dependent. Our results also support the hypothesis of the Copia retrotransposon scarcity in metazoans compared to Gypsy elements. In such a context, the GalEa-like elements present an outstanding wide distribution among eukaryotes, from fishes to red algae, and can be even highly predominant within a large taxon, such as Malacostraca. Their distribution among crustaceans suggests a dynamics that follows a "domino days spreading'' branching process in which successive amplifications may interact positively.
Plos One (1932-6203) (Public Library Science), 2013-03 , Vol. 8 , N. 3 , P. e57675

Droits : This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.
http://archimer.ifremer.fr/doc/00185/29656/28030.pdf
DOI:10.1371/journal.pone.0057675
http://archimer.ifremer.fr/doc/00185/29656/

Éditeur(s) : HAL CCSD American Society of Tropical Medicine and Hygiene
Résumé : International audience
These authors contributed equally to this work. Abstract. Human behaviors are increasingly recognized to play a key role in the spread of infectious diseases. Although a set of social and cognitive determinants has been consistently found to affect the adoption of health protective behaviors aiming to control and prevent a variety of infections, little is currently known about the ecological drivers of these behaviors in epidemic settings. In this article, we took advantage of the outbreak of chikungunya, a reemerging mosquito-borne disease, that occurred in French Guiana in 2014–15 to test empirically the assumption proposed by Zielinski-Gutierrez and Hayden that the proximity of the disease and perceptions of the natural environment may considerably shape public response to an emerging health threat. To achieve this, a cross-sectional survey was conducted among high school students of the region (N = 1462) at an early stage of the epidemic. Surprisingly, spatial analysis of the collected data leads to counterintuitive results as the participants who lived in the most affected area expressed less concern about the disease and practiced preventive behaviors less frequently than did other participants. These paradoxical results may be attributed to the possible activation of risk denial processes which have previously been observed in the risk perception literature, and described by several social and psychological defensiveness theories.
ISSN: 0002-9637

hal-01589232
http://hal.univ-reunion.fr/hal-01589232
http://hal.univ-reunion.fr/hal-01589232/document
http://hal.univ-reunion.fr/hal-01589232/file/Flamand%20...Raude%202017%20%28CHIKV%20French%20Guiana%29.pdf
DOI : 10.4269/ajtmh.16-1028

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
ODP (Ocean Drilling Program)/IODP (Integrated Ocean Drilling Program) Site 1256 is located on the Cocos Plate in the Eastern Equatorial Pacific Ocean, in a 15 Ma old oceanic lithosphere formed at the EPR during a period of superfast spreading (>200 mm/yr). ODP/IODP Hole 1256D reached for the first time the contact between sheeted dikes and underlying gabbros. It consequently offers a unique opportunity to study in situ, in present-day oceanic crust, the root zone of the sheeted dike complex. This root zone is a thin, 100 m thick boundary layer between the magmatic system (i.e., the axial melt lens, similar to 1100 degrees C), and the overlying high temperature hydrothermal system (<= 450 degrees C). The understanding of interactions within this boundary layer is critical to that of crustal processes along mid-ocean ridges.;This work focuses on the petrophysical characterization of the root zone of the sheeted dike complex in order to further constrain the hydrothermal circulation system in the vicinity of the axial melt lens, as recorded in non-granoblastic dikes, granoblastic dikes, and varitextured gabbros. The petrophysical properties were determined from sample measurements in the laboratory and were compared to in situ downhole geophysical probing. The porosity structure is bipolar, depending on lithology, resulting in a layered system. Non-granoblastic dikes are generally altered in the greenschist fades (similar to>250 degrees C) with relatively high and interconnected (cementation index m similar to 1.72, electrical tortuosity tau similar to 28.3) porosity (1.5%). In contrast, gabbros are retrogressively metamorphosed in the amphibolite (similar to>450 degrees C) and greenschist facies, with lower porosity (1.3%) that involves numerous fissures and cracks, resulting in a more connected medium (m similar to 1.58, tau similar to 11.8) than non-granoblastic dikes. These cracks are more abundant but also tend to close with increasing depth as indicated in downhole geophysical data. Porosity and alteration, as viewed from surface electrical conductivity, appear to be directly correlated.
ISSN: 0040-1951

hal-00544556
https://hal.archives-ouvertes.fr/hal-00544556
DOI : 10.1016/j.tecto.2010.07.013

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Mechanical forces influence the growth and shape of virtually all tissues and organs. Recent studies show that increased cell contractibility, growth and differentiation might be normalized by modulating cell tensions. Particularly, the role of these tensions applied by the extracellular matrix during liver fibrosis could influence the hepatocarcinogenesis process. The objective of this study is to determine if 3D stiffness could influence growth and phenotype of normal and transformed hepatocytes and to integrate extracellular matrix (ECM) stiffness to tensional homeostasis. We have developed an appropriate 3D culture model: hepatic cells within three-dimensional collagen matrices with varying rigidity. Our results demonstrate that the rigidity influenced the cell phenotype and induced spheroid clusters development whereas in soft matrices, Huh7 transformed cells were less proliferative, well-spread and flattened. We confirmed that ERK1 played a predominant role over ERK2 in cisplatin-induced death, whereas ERK2 mainly controlled proliferation. As compared to 2D culture, 3D cultures are associated with epithelial markers expression. Interestingly, proliferation of normal hepatocytes was also induced in rigid gels. Furthermore, biotransformation activities are increased in 3D gels, where CYP1A2 enzyme can be highly induced/activated in primary culture of human hepatocytes embedded in the matrix. In conclusion, we demonstrated that increasing 3D rigidity could promote proliferation and spheroid developments of liver cells demonstrating that 3D collagen gels are an attractive tool for studying rigidity-dependent homeostasis of the liver cells embedded in the matrix and should be privileged for both chronic toxicological and pharmacological drug screening.
ISSN: 0730-2312

hal-01196600
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01196600
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01196600/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01196600/file/Increasing%203D%20Matrix%20Rigidity_accepted.pdf
DOI : 10.1002/jcb.25356

Éditeur(s) : Ecole Nationale Supérieure Agronomique de Rennes (ENSAR)
Résumé : Artificial Fish Aggregating Devices (FADs) are known to concentrate tropical tunas. This aggregative behaviour drastically increases the vulnerability of these species to fishing. Alternatively, FADs can be used as oceanic observatories to study the aggregative behaviour of large pelagic fish. We conducted sea surveys in Martinique (Lesser Antilles) to i) establish a typology of the pelagic fish aggregations found around moored FADs ii) study their relations with their biotic and abiotic environment and the local fishery. The mean biomass of large pelagic fish aggregations was also estimated to provide scientific inputs to achieve a sustainable management of the moored FAD fishery. The first part presents the background of the study. We introduce the regional pelagic ecosystem, the aggregative behaviour of pelagic fish around FADs and the Martinican moored FAD fishery. The second part begins with a presentation of the conceptual framework of the study: the hierarchy theory. Observation scales and survey methodology are therefore described. Repeated echosounder surveys run in a star pattern were conducted around 2 moored FADs, in combination with underwater video observations, classical fishing experiments and CTD profiles. In the third part, the elements of the [moored FAD ¿ pelagic fish - environment - fishing] system and their interactions are numerically characterised in the vertical plane. The main type of pelagic fish aggregation was a large aggregation distributed in sub-surface (40-100 m) within a radius of 400 m of the FAD. This aggregation was mostly made of 60 cm FL blackfin tunas (Thunnus atlanticus). It appeared at sunrise and mostly spread away in the late afternoon. It was observed during all daytime surveys. The average density and the vertical structure of the micronektonic sound scattering layers (SSLs) were assessed locally around a FAD for 48h cycles. These SSLs descriptors showed positive correlation with the size and the abundance of the sub-surface tuna aggregation. Whereas this aggregation accounted for about 95% of the total biomass aggregated around a moored FAD, it was nearly unexploited by the local commercial fishermen. The fourth part focuses on the sub-surface tuna aggregation. A high variability of the spatial distribution of the aggregation was evidenced in the horizontal plane at daily, day to day and monthly temporal scales. These variations were related to fluctuations of the global abundance of the aggregation. The daytime average density of sub-surface tuna was modelled as a function of the distance to FAD, within an advection-diffusion framework. Based on these results, a universal kriging model was designed to assess the mean maximum daily biomass of the sub-surface tuna aggregation. This mean biomass estimate yielded 11 tons with an estimation error of 26%. To conclude, we present a hierarchical organization in space and time of a sub-surface tuna population distributed within a network of moored FADs, from micro to meso-scale. We suggest that the spatial distribution of tunas can be explained from fine to coarse-scales by behavioural processes (self-organization, feeding, aggregative behaviour) whereas their spatial distribution is mainly forced by environmental processes at broader scales.
L'utilisation de Dispositifs de Concentration de Poissons permet de provoquer la formation de larges agrégations de thonidés autour de dispositifs artificiels, ce qui augmente considérablement la vulnérabilité de ces ressources vis-à-vis de l'exploitation halieutique. Les DCP peuvent également être utilisés en tant qu'observatoires océaniques, afin d'étudier le comportement agrégatif du macronecton pélagique. Nous avons ainsi réalisé des observations autour de DCP ancrés en Martinique, afin de définir une typologie des agrégations de macronecton et de étudier leurs relations avec leur environnement biotique, abiotique et l'exploitation halieutique locale. Nous avons ensuite estimé la biomasse moyenne de macronecton agrégé autour d'un DCP ancré, afin de fournir des éléments scientifiques nécessaires à une gestion durable de ces ressources. La première partie présente le contexte de l'étude i.e. l'écosystème pélagique régional, le phénomène d'agrégation du macronecton autour des DCP et la pêche associée aux DCP ancrés en Martinique. La deuxième partie introduit la théorie de la hiérarchie qui a fourni le cadre conceptuel de l'étude et présente les échelles et méthodes d'observation. Le principal outil d'observation est un échosondeur scientifique, mis en oeuvre le long de parcours en étoile autour du DCP. Les prospections acoustiques ont été combinées à des observations vidéo sous marines, des pêches expérimentales et un suivi in-situ de l'environnement abiotique. La troisième partie présente une typologie des éléments constituant le système [DCP ancré - macronecton - environnement - pêche] dans le plan vertical et précise leurs interactions. Le type d'agrégation de macronecton dominant est une grande agrégation composée d'une majorité de thons noirs (Thunnus atlanticus) de taille moyenne (60 cm) distribuée en sub-surface (40-100 m), dans un rayon de 300 m autour de la tête des DCP. Cette agrégation se forme au lever du soleil et se disperse presque totalement dans l'après midi. Elle a été observée de jour lors de toutes les campagnes. Une corrélation positive entre la densité et la structure moyenne des couches micronectoniques diurnes évaluée localement autour du DCP au cours de 48 h et les dimensions et l'énergie acoustique de l'agrégation de thons de subs-surface a été mise en évidence. Malgré le fait que cette agrégation représente en moyenne 95 % de l'énergie acoustique du macronecton autour des DCP, elle est presque inexploitée par les pêcheurs artisans locaux. La quatrième partie met en évidence les fortes variations conjointes de la distribution spatiale dans le plan horizontal de la densité de l'agrégation de thons de sub-surface et de son abondance globale. Ces variations ont été observées au cours du cycle nycthéméral et aux échelles inter-journalières et mensuelles. La distribution spatiale moyenne de la densité diurne de l'agrégation en fonction de la distance au centre de gravité de l'agrégation est cependant très stable et peut être modélisée au moyen d'une équation d'advection-diffusion. Un modèle de krigeage universel, utilisant les résultats du modèle d'advection-diffusion, a permis d'évaluer la biomasse maximale journalière moyenne de l'agrégation de thons de sub-surface à une dizaine de tonnes, avec un coefficient de variation d'estimation de 26%. Nous proposons une représentation hiérarchique synthétique de la distribution spatiale d'une sous-population de thons dans un réseau de DCP ancrés de la micro à la méso-échelle. Nous suggérons que la distribution spatiale des thons est déterminée principalement à l'échelle fine (100m-1km) et à l'échelle grossière (1-10 km) par des processus comportementaux (auto-organisation, agrégation, nutrition) et par des processus environnementaux à échelle plus large.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2006/these-1735.pdf
http://archimer.ifremer.fr/doc/2006/sup-1735.pdf
http://archimer.ifremer.fr/doc/00000/1735/

Éditeur(s) : HAL CCSD Taylor & Francis
Résumé : International audience
The Jurassic Mirdita ophiolite crops out in the western branch of the Hellenide-Dinaride ophiolite belt in the Balkan Peninsula; it represents a remnant of the Tethyan oceanic lithosphere developed between the Apulian and Pelagonian microcontinents. Emplaced during the Cretaceous on the western margin of Pelagonia, the Mirdita ophiolite was involved in southwestward thrusting of the Hellenide-Dinaride tectonic units during the Eocene alpine tectonics. It was little affected, however, by these alpine events as marked by nearly horizontal Cretaceous limestone deposits overlying the ophiolite. A continuous section of Middle Jurassic oceanic crust, including thin gabbros, a N-S-trending sheeted dike complex, and extrusive rocks, is exposed in the central part of the ophiolite and thickens eastward within a regional, N-S-trending synform. Peridotite massifs exposed along the western and eastern edges of this synform show major structural and petrological differences. The eastern ultramafic domain has a harzburgitic mantle exhibiting a high-temperature asthenospheric foliation dipping steeply to moderately to the west. Major chromite deposits are restricted to these eastern ultramafic massifs. The western ultramafic domain has a zoned mantle, with asthenospheric harzburgite exposed at its western margin, progressively replaced eastward by plagioclase-peridotites that were highly strained at low temperatures, and that are bounded by amphibole-peridotites along with crustal rocks. The occurrence of plagioclase is ascribed to melt impregnation processes that occurred immediately before or during intense lithospheric deformation. The gabbros in the eastern massifs are thicker (1-2 km and layered, whereas they are highly thin and discontinuous in the western massifs. Mantle peridotites of the western massifs locally are in direct contact with the overlying diabase and volcanic rocks along ductile shear zones. Development of epidote-amphibolite facies metamorphism in upper-crustal rocks was produced by hydrothermal alteration in the oceanic realm, and was intense and widespread in the western domain. The Mirdita ophiolite likely originated in a short-lived, narrow ocean basin, which was closed during the Middle Jurassic by eastward overthrusting of the western domain, and westward subduction of the eastern domain. This constrictional phase was followed by dextral oblique convergence between the Pelagonian and Apulian microcontinents. This model implies a parautochtonous origin of the Mirdita ophiolite between these two microcontinents.
ISSN: 0020-6814

hal-00456063
https://hal.archives-ouvertes.fr/hal-00456063
DOI : 10.1080/00206810902823982

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Transposable elements are major constituents of eukaryote genomes and have a great impact on genome structure and stability. They can contribute to the genetic diversity and evolution of organisms. Knowledge of their distribution among several genomes is an essential condition to study their dynamics and to better understand their role in species evolution. LTR-retrotransposons have been reported in many diverse eukaryote species, describing a ubiquitous distribution. Given their abundance, diversity and their extended ranges in C-values, environment and life styles, crustaceans are a great taxon to investigate the genomic component of adaptation and its possible relationships with TEs. However, crustaceans have been greatly underrepresented in transposable element studies. Using both degenerate PCR and in silico approaches, we have identified 35 Copia and 46 Gypsy families in 15 and 18 crustacean species, respectively. In particular, we characterized several full-length elements from the shrimp Rimicaris exoculata that is listed as a model organism from hydrothermal vents. Phylogenic analyses show that Copia and Gypsy retrotransposons likely present two opposite dynamics within crustaceans. The Gypsy elements appear relatively frequent and diverse whereas Copia are much more homogeneous, as 29 of them belong to the single GalEa clade, and species-or lineage-dependent. Our results also support the hypothesis of the Copia retrotransposon scarcity in metazoans compared to Gypsy elements. In such a context, the GalEa-like elements present an outstanding wide distribution among eukaryotes, from fishes to red algae, and can be even highly predominant within a large taxon, such as Malacostraca. Their distribution among crustaceans suggests a dynamics that follows a ``domino days spreading'' branching process in which successive amplifications may interact positively.
ISSN: 1932-6203

hal-01544761
https://hal.archives-ouvertes.fr/hal-01544761
DOI : 10.1371/journal.pone.0057675

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
P>The Strait of Hormuz area is a transition zone between the continental collision of the Zagros (west) and the subduction of an oceanic part of the Arabian Plate beneath the Makran wedge (east). Geology and recent GPS measurements indicate that about 15 mm yr-1 of relative motion in N10 degrees E direction is accommodated by two major fault systems: (1) the NNW-trending Minab-Zendan-Palami (MZP) fault system that connects the Main Zagros Thrust (MZT) to the inner Makran thrust system and the Frontal subduction thrust and (2) the N-trending Sabzevaran-Kahnuj-Jiroft (SKJ) fault system that bounds the Jazmurian depression to the west. We use dense GPS measurements along four transects across these fault systems in order to determine the strains spatial distribution. The northern GPS transect confirms the total fault slip rates for both fault systems estimated by the tectonic analyses (about 10 and 7.3 mm yr-1 in N10 degrees direction across the MZP and SKJ fault systems, respectively). For both fault systems, the elastic deformation spreads over shear zones that are several tens of kilometres wide. However, transects located close to latitude 27 degrees N reveal a much narrower shear zone (similar to 10 km) for the MZP fault system. Moreover, we confirm that most of the present-day strain is transferred towards the frontal subduction thrust rather than towards the inner Makran thrusts. In order to complement this new GPS velocity field with spatially dense measurements, we processed a set of ERS radar images by the radar interferometry (InSAR) technique. We used both a 'stacking' and a 'persistant-scatterers' approach to differentiate the ground deformation signal which spatial gradient is expected to be very low, from the atmospheric signal. Results from these interferograms appear to be relatively in agreement with the GPS-determined strain distribution. Nevertheless, they confirm the absence of any superficial creep behaviour since no sharp discontinuity on interferometric phase can be noted on any interferogram. Finally, we use a purely kinematic 'block model' inversion process to calculate slip rates and locking depths for each fault system from our GPS measurements. These models suggest that the relative quiescence over the last 200 yr has certainly produced a slip deficit as high as 2 m. So, we may wonder if the MZP fault system is not late in the interseismic phase of its earthquake cycle.
ISSN: 0956-540X

hal-00429386
https://hal.archives-ouvertes.fr/hal-00429386
DOI : 10.1111/j.1365-246X.2009.04321.x

Éditeur(s) : HAL CCSD
Résumé : International audience
In real world situations, each person is generally in contact with only a small fraction of the entire population and exchange information through these interactions. Their number and their frequency vary from one to another individual and may be much depending on mobility of individuals. The objective of this article is to better understand how human mobility may have an impact on mobile social networking systems. This should help to answer a question as: "How might an information, a rumor, a pathogen, etc., driven by physical proximity, spread through a population?". We present a first stage of our work in which we focus on percolation processes as information flow mechanisms. We propose a synthetic mobility model and we define an artificial world populated by heterogeneous agents who differ in their mobility. Simulations are conducted on a multi-agent programmable environment. Our experimental results clearly demonstrate positive correlations between agent mobility factors and percolation thresholds.
Procedia CS

hal-00767043
https://hal.archives-ouvertes.fr/hal-00767043
DOI : 10.1016/j.procs.2012.06.007

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : This study presents a unique database of 172 plagioclase Crystallographic Preferred Orientations (CPO) of variously deformed gabbroic rocks. The CPO characteristics as a function of the deformation regime (magmatic or crystal-plastic) are outlined and discussed. The studied samples are dominantly from slow- and fast-spread present-day ocean crust, as well as from the Oman ophiolite. Plagioclase is the dominant mineral phase in the studied samples. Plagioclase CPOs are grouped into three main categories: Axial-B, a strong point alignment of (010) with a girdle distribution of [100]; Axial-A, a strong point maximum concentration of [100] with parallel girdle distributions of (010) and (001); and P-type, point maxima of [100], (010), and (001). A majority of CPO patterns are Axial-B and P-type, in samples showing either magmatic or crystal-plastic deformation textures. Axial-A CPOs are less common; they represent 21% of the samples deformed by crystal-plastic flow. Although fabric strength (ODF J index) does not show any consistent variation as a function of the CPO patterns, there is a significant difference in the relationship between the ODF and pole figures J indices; the magmatic type microstructures have high (010) pole figures J indices, which increase linearly with ODF J index, whereas the high [100] pole figures J indices of plastically deformed samples vary in a more scattered manner with ODF J index. The multistage nature of plastic deformation superposed on a magmatic structure compared with magmatic flow, and the large number of possible slip-systems in plagioclase probably account for these differences. Calculated seismic properties (P wave and S wave velocities and anisotropies) of plagioclase aggregates show that anisotropy (up to 12% for P wave and 14% for S wave) tends to increase as a function of ODF J index. In comparison with the olivine 1998 CPO database, the magnitude of P wave anisotropy for a given J index is much less than olivine, whereas it is similar for S wave anisotropy. Despite a large variation of fabric patterns and geodynamic setting, seismic properties of plagioclase-rich rocks have similar magnitudes of anisotropy. There is a small difference in the aggregate elastic symmetry, with magmatic microstructures having higher orthorhombic and hexagonal components, whereas plastic deformation microstructures have a slightly higher monoclinic component, possibly correlated with predominant monoclinic simple shear flow in plastically deformed samples. Overall, plots for CPO strength (ODF J index), pole figure strength, CPO symmetry and seismic anisotropy show significant scattering. This could be related to sampling statistics, although our database is a factor of ten higher than the olivine database of 1998, or it could be related to the low symmetry (triclinic) structure of plagioclase resulting in the addition of degrees of freedom in the processes creating the CPOs.
ISSN: 1869-9510

hal-00963439
https://hal.archives-ouvertes.fr/hal-00963439
DOI : 10.5194/se-4-511-2013

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
[1] Statistical analysis of modern oceanic subduction zone parameters, such as the age of a downgoing plate or the absolute plate motions, is performed in order to investigate which parameter controls the dip of a slab and, conversely, what the influence of slab geometry is on upper plate behavior. For that purpose, parameters have been determined from global databases along 159 transects from all subduction zones that are not perturbed by nearby collision or ridge/plateau/seamount subduction. On the basis of tomographic images, slabs that penetrate through, or lie on, the 670 km discontinuity are also identified. The results of the statistical analysis are as follows: (1) Back-arc stress correlates with slab dip, i.e., back-arc spreading is observed for deep dips (deeper than 125 km) larger than 50°, whereas back-arc shortening occurs only for deep dips less than 30°. (2) Slab dip correlates with absolute motion of the overriding plate. The correlation is even better when the slab lies on, or even more penetrates through, the 670 km discontinuity. (3) Slabs dip more steeply, by about 20° on average, beneath oceanic overriding plates than beneath continental ones. (4) Slabs dip more steeply on average by about 10° near edges. (5) Slab dip does not correlate with the magnitude of slab pull, the age of subducting lithosphere at the trench, the thermal regime of the subducting lithosphere, the convergence rate, or the subduction polarity (east versus west). The present study provides evidence that the upper plate absolute motion plays an important role on slab dip, as well as on upper plate strain. Retreating overriding plates are often oceanic ones and thus may partially explain the steeper slab dips beneath oceanic upper plates. One can infer that low slab dips correlate well with compression in continental advancing upper plates, whereas steep dips are often associated with extension in oceanic retreating upper plates. Excess weight of old slabs is often counterbalanced by other forces, probably asthenospheric in origin, such as lateral mantle flow near slab edges or anchor forces, to determine slab dip. Components: 12,676 words, 13 figures, 1 table.
ISSN: 1525-2027

hal-01261567
https://hal.archives-ouvertes.fr/hal-01261567
https://hal.archives-ouvertes.fr/hal-01261567/document
https://hal.archives-ouvertes.fr/hal-01261567/file/lallemandG32005.pdf
DOI : 10.1029/2005GC000917