Éditeur(s) : Agrocampus-ouest
Résumé : Quantitative evaluations of management measure impact on resource and fleet viability are required to provide diagnostics and feed decision process. Fisheries are complex systems where numerous dynamics interact at various spatial and temporal scales. This complexity and the difficulty to observe marine systems are responsible for the high uncertainty surrounding fishery functioning that makes it hard to identify adequate management measures. The increasing consideration of uncertainties in diagnostics argues in favor of robust management measures rather than optimal management measures. Identifying robust management measures requires the development of models that account for complexity and uncertainty in the description and prediction of management impact as well as the identification of synthetic descriptors (indicators) of the state and dynamic of the system. The aim of this work is to propose generic methodologies for developing such tools. The methodological developments are applied to the pelagic fishery of the bay of Biscay. This fishery mainly focused on anchovy and was highly impacted by fishing ban on this species since 2005. Causes for anchovy drop in biomass either environmental or due to fishing are poorly understood, making management decision much harder in a critical environmental and economic context. The adequacy of traditional management using TAC is questioned and additional spatial management measures are proposed.
Des évaluations quantitatives de l’impact de mesures de gestion sur les ressources et la viabilité des flottilles sont nécessaires pour établir des diagnostics et pour fournir des éléments d’orientation pour la gestion des pêcheries. Les pêcheries sont des systèmes complexes mettant en œuvre de nombreuses dynamiques à des échelles de temps et d’espace très variables et interagissant très fortement entre elles. Cette complexité et la difficulté d’observer les systèmes marins, conduit à une grande incertitude sur leur fonctionnement qui rend difficile la détermination des mesures de gestion adaptées. La reconnaissance de ces incertitudes, plaide de plus en plus en faveur d’une gestion robuste plutôt qu’optimale. Déterminer la robustesse des mesures de gestion nécessite le développement de modèles de description et de prédiction capable d’intégrer la complexité et l’incertitude du système, ainsi que d’outils de description synthétiques (indicateurs) de l’état et de la dynamique de la pêcherie à partir d’observations. L’objectif de ce travail est de proposer des méthodes génériques pour le développement de tels outils. Ces développements méthodologiques sont appliqués à la pêcherie pélagique du golfe de Gascogne. Cette pêcherie ciblant principalement l’anchois a été fortement perturbée par la fermeture de la pêche à cette espèce en 2005. Le déterminisme environnemental et le rôle de la pêche dans le déclin de la population d’anchois sont mal compris ce qui rend difficile la prise de décision dans un contexte économique et écologique critique. La gestion traditionnelle par TAC pourrait s’avérer insuffisante pour permettre l’exploitation durable et des mesures spatialisées sont envisagées en complément.

Droits : 2010 The Author, UEB
http://archimer.ifremer.fr/doc/00025/13630/10712.pdf
http://archimer.ifremer.fr/doc/00025/13630/

Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : International audience
Chlorophyll meters such as the SPAD-502 offer a simple, inexpensive and rapid method to estimate foliar chlorophyll content. However, values provided by SPAD-502 are unitless and require empirical calibrations between SPAD units and extracted chlorophyll values. * Leaves of 13 tree species from the tropical rain forest in French Guiana were sampled to select the most appropriate calibration model among the often-used linear, polynomial and exponential models, in addition to a novel homographic model that has a natural asymptote.* The homographic model best accurately predicted total chlorophyll content (μg cm−2) from SPAD units (R2 = 0.89). Interspecific differences in the homographic model parameters explain less than 7% of the variation in chlorophyll content in our data set. * The utility of the general homographic model for a variety of research and management applications clearly outweighs the slight loss of model accuracy due to the abandon of the species' effect.
ISSN: 1286-4560

Droits : info:eu-repo/semantics/OpenAccess
hal-00883628
https://hal.archives-ouvertes.fr/hal-00883628
https://hal.archives-ouvertes.fr/hal-00883628/document
https://hal.archives-ouvertes.fr/hal-00883628/file/hal-00883628.pdf
DOI : 10.1051/forest/2010020

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
We develop and implement a new method to take into account the impact of waves into the 3-D circulation model SYMPHONIE (Marsaleix et al., 2008, 2009a), following the simplified equations of Bennis et al. (2011) which use glm2z-RANS theory (Ardhuin et al., 2008b). These adiabatic equations are completed by additional parameterizations of wave breaking, bottom friction and wave-enhanced vertical mixing, making the forcing valid from the surf zone through to the open ocean. The wave forcing is performed by wave generation and propagation models WAVEWATCH III® (Tolman, 2008, 2009; Ardhuin et al., 2010) and SWAN (Booij et al., 1999). The model is tested and compared with other models for a plane beach test case, previously tested by Haas and Warner (2009) and Uchiyama et al. (2010). A comparison is also made with the laboratory measurements of Haller et al. (2002) of a barred beach with channels. Results fit with previous simulations performed by other models and with available observational data. Finally, a realistic case of energetic waves travelling over a coast of the Gulf of Lion (in the northwest of the Mediterranean Sea) for which currents are available at different depths as well as an accurate bathymetric database of the 0-10 m depth range, is then simulated. A grid nesting approach is used to account for the different forcings acting at different spatial scales. The simulation coupling the effects of waves and currents is successful to reproduce the powerful northward littoral drift in the 0-15 m depth zone. More precisely, two distinct cases are identified: when waves have a normal angle of incidence with the coast, they are responsible for complex circulation cells and rip currents in the surf zone, and when they travel obliquely, they generate a northward littoral drift. These features are more complicated than in the test cases, due to the complex bathymetry and the consideration of wind and non-stationary processes. Wave impacts in the inner shelf are less visible since wind and regional circulation seem to be the predominant forcings. Besides, a discrepancy between model and observations is noted at that scale, possibly linked to an underestimation of the wind stress. Lastly, this three-dimensional method allows a good representation of vertical current profiles and permits to calculate the shear stress associated with wave and current. Future work will focus on the combination with a sediment transport model.
ISSN: 1812-0806

hal-00766548
https://hal.archives-ouvertes.fr/hal-00766548
https://hal.archives-ouvertes.fr/hal-00766548/document
https://hal.archives-ouvertes.fr/hal-00766548/file/os-8-657-2012.pdf
DOI : 10.5194/osd-8-2417-2011

Éditeur(s) : HAL CCSD
Résumé : il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : ACTIVITY_REPORT
Understanding genomic evolution in wild populations is of particular importance because evolution is a central process in our understanding of populations’ history and their future response to global changes. In addition to fundamental knowledge, the study of populations’ evolution has wide applications such as conservation/restoration genetics or epidemiology. Indeed, genetic diversity is the ‘fuel’ for populations’ evolution and adaptation to new conditions, and estimating the extent and the geographic structure of genetic diversity, as well as identifying the evolutionary forces behind (demography, gene flow, and adaptation) are thus major challenges in the current context of global changes. [br/]A particular attention is currently devoted to the process of genetic divergence in wild populations, with emphases on gene flow, local adaptation, and their interactions. Indeed, adaptation in wild populations is supported in many species by many kinds of experiments based on both quantitative phenotypic traits and molecular data. However, the processes governing populations’ evolution are poorly understood in the tropical rainforest of Amazonia, and the relative influence of neutral and adaptive processes are continuously discussed. [br/]I am a young scientist interested in the process of genomic divergence in wild (tree) populations. I aimed at understanding how evolution structures the genetic diversity and governs molecular divergence in wild populations, with particular emphases on gene flow and local adaptation. During five years as a young scientist, I worked on answering the following questions, focusing on two tree species occupying vulnerable areas: mainly [i]Eperua falcata[/i] in Amazonia and, to a lesser extent, [i]Abies alba[/i] in the Mediterranean area.[br/][u]Scientific questions:[/u][br/]- Which evolutionary drivers are responsible of the structure of genetic diversity in wild populations occupying wide areas? This question was addressed at different geographical scales: from large (regional) to very local (microgeographic) scales. [br/]- What is the relative influence of neutral (gene flow, inbreeding) and adaptive drivers in the process of genetic divergence?[br/]- Is microgeographic adaptation possible in spite of extensive gene flow between populations occupying the extreme boundaries of an ecological gradient? [br/]- What is the extent of natural selection in the (whole) genome of wild populations? [br/][br/]My research work is at the interface between three promising disciplines: Evolutionary genomics (i.e. the study of populations evolution and the evolutionary drivers behind), Bioinformatics (i.e. the treatment of next-generation data), and Bayesian modelling (i.e. the empirical calibration of complex mechanistic model). I intend to take advantage of the recent advances in sequencing and informatic technologies to bring up to date the field of ecological genetics and evolutionary biology, by developing modern research strategies to study the process of genomic divergence in wild populations.
https://hal.archives-ouvertes.fr/hal-01204218

hal-01204218
https://hal.archives-ouvertes.fr/hal-01204218
PRODINRA : 286326

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Within the framework of the international field campaign COPS (Convective and Orographically induced Precipitation Study), a large suite of state-of-the-art meteorological instrumentation was operated, partially combined for the first time. This includes networks of in situ and remote-sensing systems such as the Global Positioning System as well as a synergy of multi-wavelength passive and active remote-sensing instruments such as advanced radar and lidar systems. The COPS field phase was performed from 01 June to 31 August 2007 in a low-mountain area in southwestern Germany/eastern France covering the Vosges mountains, the Rhine valley and the Black Forest mountains. The collected dataset covers the entire evolution of convective precipitation events in complex terrain from their initiation, to their development and mature phase until their decay. Eighteen Intensive Observations Periods with 37 operation days and eight additional Special Observations Periods were performed, providing a comprehensive dataset covering different forcing conditions. In this article, an overview of the COPS scientific strategy, the field phase, and its first accomplishments is given. Highlights of the campaign are illustrated with several measurement examples. It is demonstrated that COPS research provides new insight into key processes leading to convection initiation and to the modification of precipitation by orography, in the improvement of quantitative precipitation forecasting by the assimilation of new observations, and in the performance of ensembles of convection-permitting models in complex terrain.
ISSN: 0035-9009

hal-00565513
https://hal.archives-ouvertes.fr/hal-00565513
DOI : 10.1002/qj.752

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : While oceanic circulation in the Gulf of Lion (GoL) has often been studied in calm weather or with northerly winds (Tramontane or Mistral) through observations and numerical circulation models, few studies have focused on southeasterly storm events. Yet, correct representation of the circulation during storms is crucial if the suspension of sediments is to be correctly modelled throughout the Gulf. The purpose of this paper is to describe the hydrodynamics in the Gulf of Aigues-Mortes (NW of the GoL) during the storm of 18 February 2007 by using a set of data from an ADCP station placed at a depth of 65 m on the sea bed off the coast at Sète, supplemented by the ocean circulation model SYMPHONIE. This storm was characterized by a moderate south-easterly wind (15 m . s−1) and waves of up to 5 m of significant height at its apex. At the ADCP, strong currents of up to 0.8 m . s−1 near the surface and 0.5 m . s−1 near the bottom were recorded, parallel to the coast, flowing towards the south-west. The simulated currents were widely underestimated, even taking the effect of waves into account in the model. It was suspected that the representation of the wind in the atmospheric model was an underestimation. A new simulation was therefore run with an arbitrarily chosen stronger wind and its results were in much better agreement with the measurements. A simplified theoretical analysis successfully isolated the wind-induced processes, responsible for the strong currents measured during the apex and the strong vertical shear that occurred at the beginning of the storm. These processes were: 1/ the barotropic geostrophic current induced by a wind parallel to the coast and 2/ the Ekman spiral. The duration of the storm (about 36 h at the apex) explains the continuous increase of the current as predicted by the theory. The frictionally induced Ekman transport explains the current shear in the surface layer in the rising stage of the storm, and the addition of high waves and strong wind at the apex is more in favour of strong vertical mixing in the surface layer.
ISSN: 1631-0713

hal-00908200
https://hal.archives-ouvertes.fr/hal-00908200
DOI : 10.1016/j.crte.2013.07.001

Éditeur(s) : Inter-research
Résumé : Marine protected areas (MPAs) have the potential to enhance the long-term sustainability of coastal resources, and the artisanal fisheries which depend on them. However, recreational fisheries, which are increasing their impacts on coastal resources worldwide, may reduce the benefits that MPAs provide to declining artisanal fisheries. Here we used the Bonifacio Straits Natural Reserve (BSNR) Corsica as a study case to simulate the combined effects on coastal resources of artisanal and recreational fishing efforts. The BSNR ecosystem was modelled using mass-balance modelling of trophic interactions. This model was compared to another built on a non-protected area from the same region. We aggregated fishing fleets into artisanal and recreational categories, and we simulated various combinations of fishing effort over a 20 yr dynamic simulation using Ecosim. We showed that fishing activities have an additional top-down effect on the food web and that they decrease the targeted group's biomass, such as piscivorous species. We found, for some trophic groups, non-trivial patterns of biomass variation through trophic cascades. Our trophic approach revealed that some groups may suffer a biomass decrease when MPAs are set or enforced, due to the combined effect of artisanal and recreational fisheries. Overall, our results illustrate the value of modelling to manage MPAs, as a complementary tool to surveys. Models provide the opportunity to anticipate the potential consequences, at the ecosystem level, of socio-political decisions that aim to sustain coastal resources while managing artisanal and recreational fisheries.
Marine Ecology-progress Series (0171-8630) (Inter-research), 2010-08 , Vol. 412 , P. 207-221

Droits : Inter-Research 2010
http://archimer.ifremer.fr/doc/00013/12436/9246.pdf
http://archimer.ifremer.fr/doc/00013/12436/9247.pdf
DOI:10.3354/meps08679
http://archimer.ifremer.fr/doc/00013/12436/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The discerning behavior of living systems relies on accurate interactions selected from the lot of molecular collisions occurring in the cell. To ensure the reliability of interactions, binding partners are classically envisioned as finely preadapted molecules, selected on the basis of their affinity in one-step associations. But the counterselection of inappropriate interactions can in fact be much more efficiently obtained through difficult multi-step adjustment, whose final high energy state is locked by a fluctuation ratchet. The progressive addition of molecular bonds during stereo-adjustment can be modeled as a predominantly backward random walk whose first arrival is frozen by a micro-irreversible transition. A new criterion of ligand specificity is presented, that is based on the ratio rejection/incorporation. In addition to its role in the selectivity of interactions, this generic recipe can underlie other important biological phenomena such as the regular synthesis at low level of supramolecular complexes, monostable kinetic bimodality, substrate concentration thresholds or the preparation of rapidly depolymerizable structures with stored energy, like microtubules
ISSN: 0079-6107

hal-01274234
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01274234
DOI : 10.1016/j.pbiomolbio.2016.02.001
PUBMED : 26867859

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Tethyan ophiolites show an apparent poorly organized association of ultramafic andmafic rocks. By contrast tothe complete mantle-crustal sections of Semail-type ophiolite sheets, Tethyan ophiolites are characterized by asmaller amount of mafic rocks (gabbros and basalts), by the absence of any sheeted dyke complex and by thefrequent occurrence of oceanic sediments stratigraphically overlying mantle-derived peridotites and associatedgabbroic intrusions. Therefore, they are considered as typical remnants of oceanic lithosphere formed in slowspreadingenvironment or in ocean–continent transition at distal passive margins. In the very first models offormation of the Tethyan ophiolites, in the years 1980, the geodynamical processes leading to mantle unroofingwere poorly understood due to the paucity of data and concepts available at that time from the present-dayoceans. In particular, at that time, little work had focused on the distribution, origin and significance ofmafic rocks with respect to the dominant surrounding ultramafics. Here, we reconsider the geology of sometypical metaophiolites from the Western Alps and Corsica, and we show how results from the past decadeobtained in the current oceans ask for reassessing the significance of the Tethyan ophiolites in general. Revisitedexamples include a set of representative metaophiolites from the blueschists units of the Western Alps (Queyrasregion) and from Alpine Corsica (Golo Valley). Field relationships between the ophiolitic basement andthe metasedimentary/metavolcanic oceanic cover are described, outlining a typical character of the Tethyanophiolite lithological associations. Jurassic marbles and polymictic ophiolite metabreccias are unconformablyoverlying the mantle-gabbo basement, in a way strictly similar to what is observed in the non-metamorphicAppennine ophiolites or Chenaillet massif. This confirms that very early tectonic juxtaposition of ultramafic andmafic rocks occurred in the oceanic domain before subduction. This juxtaposition resulted from tectonic activitythat is now assigned to the development of detachment faults and to the formation of Oceanic Core Complexes(OCCs) at the axis of slow spreading ridges. This fundamental Plate Tectonics process is responsible for the exhumationand for the axial denudation of mantle rocks and gabbros at diverging plate boundaries. In addition, fieldrelationships between the discontinuous basaltic formations and the ultramafic–mafic basement indicate that thistectonic stage is followed or not by a volcanic stage.We discuss this issue in the light of available field constraints.
ISSN: 0012-8252

insu-01096467
https://hal-insu.archives-ouvertes.fr/insu-01096467
https://hal-insu.archives-ouvertes.fr/insu-01096467/document
https://hal-insu.archives-ouvertes.fr/insu-01096467/file/Lagabrielle-EarthSciRev-2014.pdf
DOI : 10.1016/j.earscirev.2014.11.004

Éditeur(s) : Université de Paris 7
Résumé : The Seine estuary and its adjacent region Pays de Caux are two significant sources of mercury for coastal marine environments. It is carried through fluvial means for the Seine bay and through karstic fresh water emergences for Pays de Caux's coastal area. Mercury cycle in the Seine estuary and bay is affected by additional anthropical activities. The estuary's maximal turbidity area acts like a trap and a chemical reactor for fluvial mercury. Within this area, we can confirm: (i) the non conservative behaviour of dissolved mercury; (ii) mercury enrichment of particles when comparing the Seine's and marine environment and we suggest mercury particle redistribution from the organic fraction to the oxyhydroxydes fraction. A large fraction of mercury is exported in this state towards coastal areas. Mercury reduction in surface coastal waters and its atmospherical recycling are major phenomena. Photoreduction and biological reduction play quantitative roles equivalent to total mercury recycling via the atmosphere corresponding approximately to 30 % of fluvial exchanges. We are demonstrating that reactive forms of mercury are supporting photoreduction. Mercury behaviour within Pays de Caux's karst depends of the hydrogeological context of the system (time and flow speed, turbidity, flow); regardless of the speciation and/or partition in underground waters, the total amount of mercury in intertidal areas is quantitatively the same as in the Seine estuary. Mercury brought through intertidal emergences (karstic exudations) is not « filtered » by a maximal turbidity area and is more widely bio-available for mussels than in the Seine estuary. Even being free from growth factor influences through simple models, mussels found in Pays de Caux still show one of the highest mercury contamination on the French coast; for the first time this places the emphasis on how much mercury is brought from underground waters to the coastal environment. Surface complexation modelisation tests are able to reproduce the major part of mercury partition in the Seine estuary and bay if a very low mercury exchangeable fraction and minimum complexation parameters are taken into account; thermodynamic calculations also suggest that a strong or highly concentrated « dissolved » ligand must be present in the water in order to compete with chlorocomplex formations and explain our measures.
L'estuaire de la Seine et la région adjacente du Pays de Caux sont deux sources significatives en mercure pour le milieu marin côtier. Les apports sont d'une part fluviatiles en ce qui concerne la Baie de Seine et karstiques via des émergences d'eau douce pour la zone côtière du Pays de Caux. Le cycle du mercure en estuaire et baie de Seine est perturbé par les apports liés aux activités anthropiques. La zone de turbidité maximum de l'estuaire joue le rôle de piège et de réacteur chimique pour le mercure fluviatile. Au sein de cette zone, nous mettons en évidence : (i) un comportement non-conservatif du mercure dissous; (ii) un enrichissement en mercure des particules par rapport à celles de la Seine et du milieu marin et suggérons une redistribution du mercure particulaire de la fraction organique vers la fraction oxyhydroxydes. C'est sous cette forme qu'une fraction importante du mercure est exportée vers la zone côtière. La réduction du mercure dans les eaux côtières de surface et son recyclage atmosphérique sont des phénomènes majeurs. En effet, la photoréduction et la réduction biologique jouent des rôles quantitativement équivalents avec un recyclage total du mercure via l'atmosphère correspondant à environ 30% des apports fluviatiles. Nous montrons que les formes réactives du mercure constituent le substrat de la photoréduction. Le comportement du mercure au sein du karst du Pays de Caux dépend du contexte hydrogéologiques du système (temps et vitesse de circulation, turbidité, débit) ; quelle que soit la spéciation et/ou la partition dans les eaux souterraines, l'apport en mercure total à la zone intertidale est quantitativement du même ordre de grandeur que les apports de la Seine. Le mercure apporté par les émergences intertidales (exutoires karstiques) n'est pas « filtré » par une zone de turbidité maximale et se trouve plus largement biodisponible pour les moules qu'en estuaire de Seine. En s'affranchissant, par des modèles simples, de l'influences des facteurs de croissance, les moules du Pays de Caux affichent toujours une contamination par le mercure parmi les plus élevées du littoral français; ceci met pour la première fois l'emphase sur l'importance de l'apport en mercure par des eaux souterraines dans un environnement côtier. Les essais de modélisation de complexation de surface reproduisent la majeure partie de la partition du mercure dans l'estuaire et la baie de Seine si l'on tient compte d'une fraction échangeable en mercure très faible et de paramètres de complexation minimums ; les calculs thermodynamiques suggèrent aussi qu'un ligand « dissous » fort ou présent à de fortes concentrations doit être présent dans l'eau afin d'entrer en compétition avec la formation de chlorocomplexes et expliquer nos mesures.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2001/these-1842.pdf
http://archimer.ifremer.fr/doc/00000/1842/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
At the North-Ecuadorian convergent margin (1°S–1.5°N), the subduction of the rough Nazca oceanic plate leads to tectonic erosion of the upper plate and complex seismogenic behavior of the megathrust. We used three selected pre-stack depth migrated, multi-channel seismic reflection lines collected during the SISTEUR cruise to investigate the margin structure and decipher the impact of the subducted Atacames seamounts on tectonic erosion, interseismic coupling, and seismogenesis in the region of the 1942 Mw7.8 earthquake.This dataset highlights a subducted ∼30×40 km∼30×40 km, double-peak seamount that belongs to the Atacames seamount chain and that is associated with a deep morphologic re-entrant containing mass transport deposits.The seamount subduction uplifted the margin basement by ∼1.6 km and pervasively broke the margin by deep and intense reverse faulting ahead of the seamount, a process that is likely to weaken considerably the margin. In the seamount wake, the basement reverse fault system rotated counter-clockwise. This faulted basement is overlain with slope sediment sliding along listric normal faults that sole out onto the BSR. This superposition of deep tectonic contraction within the basement and shallow gravitational extension deformation within the sediment highlights the key role of gas hydrate on outer slope erosion.In addition to long-term regional basal erosion, the margin basement has thinned locally by an extra 0.8–1 km in response to the subduction of the Atacames seamount chain and hydrofracturing by overpressured fluids at the margin toe. This pervasively and deeply fractured margin segment is associated with a seismically quiet and GPS-modeled low interseismic coupling corridor that terminates downdip near the 1942 epicenter and locked zone. We suggest that the deeply buried double-peak Atacames seamount triggered the 1942 earthquake ahead of its leading flank. This result supports previous studies proposing that subducted seamounts provide unfavorable conditions for locking the updip segment of the plate boundary limiting the updip extent of seismogenic zones, but may favor large subduction earthquakes at greater depths.
ISSN: 0012-821X

hal-01256399
https://hal.archives-ouvertes.fr/hal-01256399
DOI : 10.1016/j.epsl.2015.10.043

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
It is becoming clear that the female brain has an inherent plasticity that is expressed during reproduction. The changes that occur benefit the offspring, which in turn secures the survival of the mother’s genetic legacy. Thus, the onset of maternal motivation involves basic mechanisms from genetic expression profiles, to hormone release, to hormone-neuron interactions, all of which fundamentally change the neural architecture – and for a period of time that extends, interestingly, beyond the reproductive life of the female. Although multiple brain areas involved in maternal responses are discussed, this review focuses primarily on plasticity in the maternal hippocampus during pregnancy, the postpartum period and well into aging as it pertains to changes in cognition. In addition, the effects of prolonged and repeated stress on these dynamic responses are considered. The maternal brain is a marvel of directed change, extending into behaviors both obvious (infant-directed) and less obvious (predation, cognition). In sum, the far-reaching effects of reproduction on the female nervous system provide an opportunity to investigate neuroplasticity and behavioral flexibility in a natural mammalian model.
ISSN: 0018-506X

hal-01169791
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169791
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169791/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01169791/file/Neuroplasticity%20In%20The%20Maternal%20Hippocampus_accepted.pdf
DOI : 10.1016/j.yhbeh.2015.06.004

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Over the years, a number of different models and techniques have been proposed to both quantify and explain the glacial isostatic adjustment (GIA) process. There are serious challenges, however, to obtaining accurate results from measurements, due to noise in the data and the long periods of time necessary to identify the relatively small-magnitude signal in certain regions. The primary difficulty, in general, is that most of the geophysical signals that occur in addition to GIA are nonstationary in nature. These signals are also corrupted by random as well as correlated noise added during data acquisition. The nonstationary characteristic of the data makes it difficult for traditional frequency-domain denoising approaches to be effective. Time-frequency filters present a more robust and reliable alternative to deal with this problem. This paper proposes an extended S transform filtering approach to separate the various signals and isolate that associated with GIA. Continuous global positioning system (GPS) data from eastern Canada for the period from June 2001 to June 2006 are analyzed here, and the vertical velocities computed after filtering are consistent with the GIA models put forward by other researchers.
ISSN: 0033-4553

hal-00795451
https://hal.archives-ouvertes.fr/hal-00795451
DOI : 10.1007/s00024-011-0404-1

Éditeur(s) : HAL CCSD
Résumé : Guadeloupe Island (West French Indies) is one of the twenty islands that compose the Lesser Antilles Arc, which results from the subduction of the Atlantic Ocean plate beneath the Caribbean one. The island lies in a complex volcano-tectonic system and the need to understand its geological context has led to numerous on- and offshore geophysical investigations. This work presents the compilation and processing of available, on-land, airborne and marine, gravity and magnetic data acquired during the last 40 years on Guadeloupe Islands and at the scale of the Lesser Antilles Arc. The overall dataset provides new Bouguer and reduced to the pole magnetic anomaly maps at the highest achievable resolution. Regionally, the main central negative gravity trend of the arc allows defining two subsident areas. The first one is parallel to the arc direction (~N160°E) to the north, whereas the second unexpected southern one is oriented parallel to oceanic ridges (N130°E). Along the Outer Arc, the long wavelength positive anomaly is interpreted, at least along the Karukera Spur, as an up-rise of the volcanic basement in agreement with the seismic studies. To the NE of Guadeloupe, the detailed analysis of the geophysical anomalies outlines a series of structural discontinuities consistent with the main bathymetric morphologies, and in continuity of the main fault systems already reported in this area. Based on geophysical evidences, this large scale deformation and faulting of the Outer Arc presumably primarily affects the Atlantic subducting plate and secondarily deforms the upper Caribbean plate and the accretion prism. At the scale of Guadeloupe Island, joined gravity and magnetic modeling has been initiated based on existing interpretation of old seismic refraction profiles, with a general structure in three main layers. According to our geophysical anomalies, additional local structures are also modeled in agreement with geological observations: i) the gravity and magnetic signals confirm an up-rise of the volcanic basement below the limestone platforms outcropping on Grande-Terre Island ; ii) the ancient volcanic complexes of Basse-Terre Island are modeled with high density and reverse magnetized formations; iii) the recent volcanic centre is associated with formations consistent with the low measured density and the underlying hydrothermal system. The EW models coherently image a NNW-SSE depression structure in half-graben beneath Basse-Terre Island, its western scarp following the arc direction in agreement with bathymetric and seismic studies to the north of the island. The so-defined depressed area, and particularly its opening in half-graben toward the SW, is interpreted as the present-day front of deformation of the upper plate associated with the recent volcanic activity on and around Guadeloupe. Based on this regional deformation model, perspectives are given for further integrated investigation of key targets to address the internal structure and evolution of the Lesser Antilles Arc and Guadeloupe volcanic system.
Colloque 2012 du Comité National Français de Géodésie et Géophysique (CNFGG)
Clermont-Ferrand, France

hal-00742653
https://hal-brgm.archives-ouvertes.fr/hal-00742653
https://hal-brgm.archives-ouvertes.fr/hal-00742653/document
https://hal-brgm.archives-ouvertes.fr/hal-00742653/file/CNFGG_Caraibes.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : Rh (Rhesus) is a major blood group system in man, which is clinically significant in transfusion medicine. Rh antigens are carried by an oligomer of two major erythroid specific polypeptides, the Rh (D and CcEe) proteins and the RhAG glycoprotein, that shared a common predicted structure with 12 transmembrane a-helices (M0 to M11). Non erythroid homologues of these proteins have been identified (RhBG and RhCG), notably in diverse organs specialized in ammonia production and excretion, such as kidney, liver and intestine. Phylogenetic studies and experimental evidence have shown that these proteins belong to the Amt/Mep/Rh protein superfamily of ammonium/methylammonium permease, but another view suggests that Rh proteins might function as CO2 gas channels. Until recently no information on the structure of these proteins were available. However, in the last two years, new insight has been gained into the structural features of Rh proteins (through the determination of the crystal structures of bacterial AmtB and archeaebacterial Amt-1. Here, models of the subunit and oligomeric architecture of human Rh proteins are proposed, based on a refined alignment with and crystal structure of the bacterial ammonia transporter AmtB, a member of the Amt/ Mep/Rh superfamily. This alignment was performed considering invariant structural features, which were revealed through Hydrophobic Cluster Analysis, and led to propose alternative predictions for the less conserved regions, particularly in the N-terminal sequences. The Rh models, on which an additional Rh-specific, N-terminal helix M0 was tentatively positioned, were further assessed through the consideration of biochemical and immunochemical data, as well as of stereochemical and topological constraints. These models highlighted some Rh specific features that have not yet been reported. Among these, are the prediction of some critical residues, which may play a role in the channel function, but also in the stability of the subunit structure and oligomeric assembly. These results provide a basis to further understand the structure/function relationships of Rh proteins, and the alterations occurring in variant phenotypes.
ISSN: 1246-7820

hal-00068842
https://hal.archives-ouvertes.fr/hal-00068842

Résumé : Dans cette thèse, nous présentons deux modèles mathèmatiques qui simulent la dynamique d'une épidémie de dengue à Cuba. Le premier modèle est décrit par un système d'équations différentielles ordinaires dans le but d'estimer certains paramètres essentiels dans l'évolution de l'èpidérnie. Le deuxième modèle utilise une inclusion différentielle afin de simuler la dynamique sous incertitudes. Nous passons aussi en revue une famille de modèles d'équations différentielles pour l'épidémie de VIH/SIDA à Cuba et nous reformulons l'un de ces modèles en une inclusion différentielle. En outre, pour analyser le comportement de ces deux épidémies et l'effet de l'intervention nous développons un algorithme pratique pour le calcul des ensembles atteignables des inclusions différentielles, qui fournit un cadre mathématique nous permettant de faire des prédictions appropriées de toutes les variables d'état des modèles
Ln this work we present two mathematical models that simulate the dynamics of an epidemic outbreak of dengue disease in Cuba. The i first model is described by a system of ordinary differential equations with the purpose of estimaling some essential parameters in the evolution of the epidemie. The second model uses a differential inclusion in order to simulate the dynamic under uncertainties. Also, we review a family of ordinary differential equations models of HIV/AIDS epidemic in Cuba and one of these models is reformulated as a differential inclusion. In addition, to analyze the behavior of these two epidemies and the effect of intervention, we develop a practical algorithm for the computation of the reachable sets of the differential inclusions, providing a mathematical framework allowing us to make suitable predictions of aII state variables of the models at a future time.

http://www.theses.fr/2011AGUY0413

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Challenging evaluation of tropical forest biodiversity requires the reporting of taxonomic diversity but also the systematic characterization of wood properties in order to discover new promising species for timber industry. Among wood properties, the dimensional stability is regarded as a major technological characteristic to validate whether a wood species is adapted to commercial uses. Cell structure and organization are known to influence the drying shrinkage making wood density and microfibrils angle markers of choice to predict wood dimensional stability. On the contrary the role of wood extractive content remains unclear. This work focuses on the fast-growing tropical species Bagassa guianensis and we report herein a correlation between heartwood drying shrinkage and extractive content. Chemical extractions and shrinkage experiments were performed on separate wood twin samples to better evaluate correctly how secondary metabolites influence the wood shrinkage behaviour. Extractive content were qualitatively and quantitatively analysed using HPLC and NMR spectroscopy. We found that B guianensis heartwood has a homogeneous low shrinkage along its radius that could not be explained only by its basic density. In fact the low drying shrinkage is correlated to the high extractive content and a corrected model to improve the prediction of wood dimensional stability is presented. Additionally NMR experiments conducted on sapwood and heartwood extracts demonstrate that secondary metabolites biosynthesis occurs in sapwood thus revealing B. guianensis as a Juglans-Type heartwood formation. This work demonstrates that B. guianensis, a fast-growing species associated with high durability and high dimensional stability, is a good candidate for lumber production and commercial purposes.
ISSN: 1932-6203

hal-01392725
https://hal.archives-ouvertes.fr/hal-01392725
https://hal.archives-ouvertes.fr/hal-01392725/document
https://hal.archives-ouvertes.fr/hal-01392725/file/2016_BossuBeaucheneEstevezDuplaisClair_PlosOne_WoodDimentionalStabilityAndSecondaryMetabolites.pdf
DOI : 10.1371/journal.pone.0150777.s005

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Experimentally Assisted Molecular Modelling (EAMM) is an original approach for predicting the structure of organic micro-crystals and deducing their habit in the presence of various solvents and additives. It is applied here in the case of n-octylamino-nitrobenzoxadiazole (nOA-NBD), a fluorescent compound. This general approach is first of all described and validated by its blind application to three known and closely-related crystals. Then, the whole process is applied to predict the molecular crystal generated by n-octylamino-NBD, including the molecule conformation, its structure (cell parameters, molecular packing, X-ray powder diagrams) and its theoretical plus actual habits in the presence of a solvent (p-xylene) and two additives (acetic acid and n-dodecane). The conformation of the predicted molecule is validated by comparison with two similar molecules embedded in observable crystals. Then, the choice between two proposed structures (with the same energy and two equiprobable packings) is based on the comparison between experimental and re-computed X-ray powder diffraction diagrams, and also on the interpretation of an actual TEM image in the light of the proposed cell parameters. This choice is confirmed by the comparison between the vapour-grown face development (proposed by the BFDH or the attachment energy models) and the actual face development in a pure solvent. Finally, the actual habit deduced from comparing the crystal attachment energy with the adsorption energy of solvent or additive molecules is validated by SEM images of NBD micro-crystals in presence of the solvent alone or in presence of both additives. In conclusion, the EAMM approach appears to be a decisive tool for quickly simulating structural and habit properties of the molecular crystals, accessible or not by experimentation. Thus, a numerical selection of molecules becomes possible in view of deriving organic materials with predetermined properties, such as the fluorescence properties of the compound considered in the present study.
ISSN: 0022-0248

hal-00857894
https://hal.archives-ouvertes.fr/hal-00857894
DOI : 10.1016/j.jcrysgro.2011.07.035

Éditeur(s) : Public Library Science
Résumé : The blue mussel, Mytilus edulis, is a commercially important species, with production based on both fisheries and aquaculture. Dynamic Energy Budget (DEB) models have been extensively applied to study its energetics but such applications require a deep understanding of its nutrition, from filtration to assimilation. Being filter feeders, mussels show multiple responses to temporal fluctuations in their food and environment, raising questions that can be investigated by modeling. To provide a better insight into mussel–environment interactions, an experiment was conducted in one of the main French growing zones (Utah Beach, Normandy). Mussel growth was monitored monthly for 18 months, with a large number of environmental descriptors measured in parallel. Food proxies such as chlorophyll a, particulate organic carbon and phytoplankton were also sampled, in addition to non-nutritious particles. High-frequency physical data recording (e.g., water temperature, immersion duration) completed the habitat description. Measures revealed an increase in dry flesh mass during the first year, followed by a high mass loss, which could not be completely explained by the DEB model using raw external signals. We propose two methods that reconstruct food from shell length and dry flesh mass variations. The former depends on the inversion of the growth equation while the latter is based on iterative simulations. Assemblages of food proxies are then related to reconstructed food input, with a special focus on plankton species. A characteristic contribution is attributed to these sources to estimate nutritional values for mussels. M. edulis shows no preference between most plankton life history traits. Selection is based on the size of the ingested particles, which is modified by the volume and social behavior of plankton species. This finding reveals the importance of diet diversity and both passive and active selections, and confirms the need to adjust DEB models to different populations and sites.
Plos One (1932-6203) (Public Library Science), 2014-10 , Vol. 9 , N. 10 , P. 1-13

Droits : 2014 Picoche et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
http://archimer.ifremer.fr/doc/00218/32895/31380.pdf
http://archimer.ifremer.fr/doc/00218/32895/31381.pdf
http://archimer.ifremer.fr/doc/00218/32895/31382.pdf
http://archimer.ifremer.fr/doc/00218/32895/31383.pdf
http://archimer.ifremer.fr/doc/00218/32895/31384.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Lithospheric-scale faults related to oblique subduction are responsible for some of the most hazardous earthquakes reported worldwide. The mega-thrust in the Sunda sector of the Sumatran oblique subduction has been intensively studied, especially after the infamous 2004 Mw 9.1 earthquake, but its onshore kinematic complement within the Sumatran subduction, the transform Sumatran Fault System, has received considerably less attention. In this paper, we apply a combination of analysis of Digital Elevation Models (ASTER GDEM) and field evidence to resolve the kinematics of the leading edge of deformation of the northern sector of the Sumatran Fault System. To this end, we mapped the northernmost tip of Sumatra, including the islands to the northwest, between 4.5°N and 6°N. Here, major topographic highs are related to different faults. Using field evidence and our GDEM structural mapping, we can show that in the area where the fault bifurcates into two fault strands, two independent kinematic regimes evolve, both consistent with the large-scale framework of the Sumatran Fault System. Whereas the eastern branch is a classic Riedel system, the western branch features a fold-and-thrust belt. The latter contractional feature accommodated significant amounts (c. 20%) of shortening of the system in the study area. Our field observations of the tip of the NSFS match a strain pattern with a western contractional domain (Pulau Weh thrust splay) and an eastern extensional domain (Pulau Aceh Riedel system), which are together characteristic of the tip of a propagating strike-slip fault, from a mechanical viewpoint. For the first time, we describe the strain partitioning resulting from the propagation of the NSFS in Sumatra mainland. Our study helps understanding complex kinematics of an evolving strike-slip system, and stresses the importance of field studies in addition to remote sensing and geophysical studies.
ISSN: 0040-1951

hal-01467196
https://hal.archives-ouvertes.fr/hal-01467196
DOI : 10.1016/j.tecto.2016.04.050