Éditeur(s) : HAL CCSD
Résumé : Given the technological development of embedded satellite sensors, the potential of available satellite images increases so that the question now arises of their most efficient exploitation possible. This is the purpose of the CARTAM-SAT project to fluidize the processing workflow from satellite images to users. The thesis is part of this framework.Processing operations relating to images have evolved over the years. Low-resolution images were processed by a so-called pixel approach while the high-resolution has allowed the development of a so-called object approach. The latter focuses on analysing not about the isolated pixels, but about groups of pixels representative of concrete objects on the ground. Thus, in principle, these are groups of pixels with a domain-specific remote sensing semantics.Along with satellite imagery, knowledge representation has evolved. The standards of representation have benefited from the expansion of the web to give rise to standards like OWL. This one is widely based on description logics that allow the use of automated reasoners able to infer implicit knowledge.This thesis is at the junction of these two sciences and provides an ontological approach for analysing satellite images. The aim is to formalize different types of knowledges and conceptualizations implicitly used by image processing programs and by remote sensing experts, and then reasoning automatically on an image description to obtain one semantic interpretation.This general principle may have numerous technical variations. The implementation consisted in a prototype combining a satellite image analysis library and an ontology-based reasoner. The implementation proposed in the thesis allows to explore four technical variations of the principle that lead to discussions on the complementarity of pixel and object analysis paradigms, the representation of some of the spatial relations and the role of knowledge in relation to processing.
Étant donnée l'évolution technologique des capteurs embarqués à bord des satellites, le potentiel d'images satellitaires accessible s'accroît de telle manière que se pose maintenant la question de son exploitation la plus efficace possible. C'est l'objectif du projet CARTAM-SAT que de fluidifier la chaîne de traitement depuis les satellites jusqu'aux utilisateurs des images. La thèse s'inscrit dans ce cadre. Les traitements relatifs aux images ont évolué au cours des années. Les images basse résolution étaient traitées par une approche dite pixel alors que la haute résolution a permis le développement d'une approche dite objet. Cette dernière s'attache à analyser non plus des pixels isolés, mais des groupes de pixels représentatifs d'objets concrets sur le terrain. Ainsi, en principe, ces groupes de pixels sont dotés d'une sémantique propre au domaine de la télédétection. La représentation des connaissances a évolué parallèlement aux images satellitaires. Les standards de représentation ont profité de l'expansion du web pour donner naissance à des standards comme OWL. Celui-ci repose en grande partie sur les logiques de description qui permettent l'utilisation de raisonneurs automatiques capables d'inférer une connaissance implicite.Cette thèse se place à la jonction de ces deux sciences et propose une approche ontologique d'analyse des images satellitaires. Il s'agit de formaliser différents types de connaissances et de conceptualisations implicitement utilisés par les logiciels de traitement d'image et par les experts en télédétection, puis de raisonner automatiquement sur la description d'une image pour en obtenir une interprétation sémantique.Ce principe général est susceptible de nombreuses déclinaisons techniques. La mise en œuvre a consisté en la réalisation d'un prototype alliant une bibliothèque d'analyse d'images satellitaires et un raisonneur basé sur les ontologies. L'implémentation proposée dans la thèse permet d'explorer quatre déclinaisons techniques du principe qui mènent à des discussions sur la complémentarité des paradigmes d'analyse pixel et objet, la représentation de certaines relations spatiales et la place de la connaissance par rapport aux traitements.
https://tel.archives-ouvertes.fr/tel-00998692

NNT : 2013MON20059
tel-00998692
https://tel.archives-ouvertes.fr/tel-00998692
https://tel.archives-ouvertes.fr/tel-00998692/document

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Wallace (1951) and Bott (1959) were the first to introduce the idea that the slip on each fault surface has the same direction and sense as the maximum shear stress resolved on that surface. However, this simplified hypothesis is questionable since fault mechanical interactions may induce slip reorientations. Earlier numerical geomechanical models confirmed that the slickenlines (slip vectors) are not necessarily parallel to the maximum resolved shear stress but are consistent with local stress perturbations. This leads us to ask as to what extent the Wallace and Bott simplifications are reliable as a basis hypothesis for stress inversion from fault slip data. Here, a geomechanical multi-parametric study using a 3D boundary element method, covering (i) fault geometries such as intersected faults or corrugated fault surfaces, (ii) the full range of Andersonian state of stress, (iii) fault friction, (iv) fault fluid pressure, (v) half space effect and (vi), rock properties, is performed in order to understand the effect of each parameter on the misfit angle between geomechanical slip vectors and the resolved shear stresses. It is shown that significant misfit angles can be found under specific configurations invalidating the Wallace and Bott assumptions, even though fault friction tends to minimize the misfit. We therefore conclude that in such cases, stress inversions based on fault slip data should be interpreted with care.
ISSN: 0040-1951

hal-01218418
https://hal.archives-ouvertes.fr/hal-01218418
DOI : 10.1016/j.tecto.2015.06.030

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The present study aims at better deciphering the different mechanisms involved in the functioning of the subduction interplate. A 2D thermo-mechanical model is used to simulate a subduction channel, made of oceanic crust, free to evolve. Convergence at constant rate is imposed under a 100 km thick upper plate. Pseudo-brittle and non-Newtonian behaviours are modelled. The influence of the subduction channel strength, parameterized by the difference in activation energy between crust and mantle () is investigated to examine in detail the variations in depth of the subduction plane down-dip extent, . First, simulations show that numerical resolution may be responsible for an artificial and significant shallowing of if the weak crustal layer is not correctly resolved. Second, if the age of the subducting plate is 100 Myr, subduction occurs for any . The stiffer the crust is, that is, the lower is, the shallower is (60 km depth if kJ/mol) and the hotter the fore-arc base is. Conversely, imposing a very weak subduction channel ( J/mol) leads there to an extreme mantle wedge cooling and inhibits mantle melting in wet conditions. Partial kinematic coupling at the fore-arc base occurs if kJ/mol. If the incoming plate is 20 Myr old, subduction can occur under the conditions that the crust is either stiff and denser than the mantle, or weak and buoyant. In the latter condition, cold crust plumes rise from the subduction channel and ascend through the upper lithosphere, triggering (1) partial kinematic coupling under the fore-arc, (2) fore-arc lithosphere cooling, and (3) partial or complete hindrance of wet mantle melting. then ranges from 50 to more than 250 km depth and is time-dependent if crust plumes form. Finally, subduction plane dynamics is intimately linked to the regime of subduction-induced corner flow. Two different intervals of are underlined: 80–120 kJ/mol to reproduce the range of slab surface temperature inferred from geothermometry, and 10–40 kJ/mol to reproduce the shallow hot mantle wedge core inferred from conditions of last equilibration of near-primary arc magmas and seismic tomographies. Therefore, an extra process controlling mantle wedge dynamics is needed to satisfy simultaneously the aforementioned observations. A mantle viscosity reduction, by a factor 4–20, caused by metasomatism in the mantle wedge is proposed. From these results, I conclude that the subduction channel down-dip extent, , should depend on the subduction setting, to be consistent with the observed variability of sub-arc depths of the subducting plate surface.
ISSN: 0031-9201

hal-01623155
https://hal.archives-ouvertes.fr/hal-01623155
DOI : 10.1016/j.pepi.2017.05.008

Éditeur(s) : HAL CCSD PeerJ
Résumé : International audience
Understanding the role of predators in food webs can be challenging in highly diverse predator/prey systems composed of small cryptic species. DNA based dietary analysis can supplement predator removal experiments and provide high resolution for prey identification. Here we use a metabarcoding approach to provide initial insights into the diet and functional role of coral-dwelling predatory fish feeding on small invertebrates. Fish were collected in Moorea (French Polynesia) where the BIOCODE project has generated DNA barcodes for numerous coral associated invertebrate species. Pyrosequencing data revealed a total of 292 Operational Taxonomic Units (OTU) in the gut contents of the arc-eye hawkfish (Paracirrhites arcatus), the flame hawkfish (Neocirrhites armatus) and the coral croucher (Caracanthus maculatus). One hundred forty-nine (51%) of them had species-level matches in reference libraries (>98% similarity) while 76 additional OTUs (26%) could be identified to higher taxonomic levels. Decapods that have a mutualistic relationship with Pocillopora and are typically dominant among coral branches, represent a minor contribution of the predators' diets. Instead, predators mainly consumed transient species including pelagic taxa such as copepods, chaetognaths and siphonophores suggesting non random feeding behavior. We also identified prey species known to have direct negative interactions with stony corals, such as Hapalocarcinus sp, a gall crab considered a coral parasite, as well as species of vermetid snails known for their deleterious effects on coral growth. Pocillopora DNA accounted for 20.8% and 20.1% of total number of sequences in the guts of the flame hawkfish and coral croucher but it was not detected in the guts of the arc-eye hawkfish. Comparison of diets among the three fishes demonstrates remarkable partitioning with nearly 80% of prey items consumed by only one predator. Overall, the taxonomic resolution provided by the metabarcoding approach highlights a highly complex interaction web and demonstrates that levels of trophic partitioning among coral reef fishes have likely been underestimated. Therefore, we strongly encourage further empirical approaches to dietary studies prior to making assumptions of trophic equivalency in food web reconstruction. How to cite this article Leray et al. (2015), Metabarcoding dietary analysis of coral dwelling predatory fish demonstrates the minor contribution of coral mutualists to their highly partitioned, generalist diet. PeerJ 3:e1047
ISSN: 2167-8359

Droits : http://creativecommons.org/licenses/by/
hal-01174184
https://hal-univ-perp.archives-ouvertes.fr/hal-01174184
https://hal-univ-perp.archives-ouvertes.fr/hal-01174184/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01174184/file/peerj-1047.pdf
DOI : 10.7717/peerj.1047

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
The dynamics of mantle plumes and the origin of their associated swells remain some of the most controversial topics in geodynamics. Here we construct a numerical model of the mantle flow beneath the French Polynesia region. Our study is based on a new regional seismic tomography model, which high resolution allows obtaining information at the scale of plumes. We find excellent correlations between the observed and the modeled dynamic swells, between the modeled flow pattern and the active volcanism and between the buoyancy fluxes obtained from our numerical model and the ones deduced from the swells morphology. These outstanding fits reveal for the first time that a direct link exists between the surface observations and mantle flows.
ISSN: 0094-8276

hal-01236157
http://hal.univ-reunion.fr/hal-01236157
http://hal.univ-reunion.fr/hal-01236157/document
http://hal.univ-reunion.fr/hal-01236157/file/Adam_South_Pacific_Superswell_GRL2010.pdf
DOI : 10.1029/2010GL042534

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Algorithms issued from the NonLinear Galerkin method have been used in many situations and with different discretizations for the resolution of evolutionary nonlinear equations. The main idea of these methods is to use a splitting of the solution in order to model the equation. According to the splitting of the solution, a splitting of the equation is obtained. The modeling principle is to freeze terms which have a small time variation. In this work we use wavelet discretizations of the 2-D Burgers equations and compare the results with the hierarchical finite elements method. The numerical tests indicate that wavelets give better results than finite elements
ISSN: 0885-7474

hal-00383423
https://hal.archives-ouvertes.fr/hal-00383423
DOI : 10.1007/s10915-004-4806-4

Éditeur(s) : HAL CCSD Institute of Electrical and Electronics Engineers
Résumé : International audience
An effective solution for increasing the exposure uniformity and efficiency of biological samples in in vitro bioelectromagnetic experiments at 60 GHz is proposed by introducing a novel choke ring antenna (CRA). The CRA is optimized to provide a uniform exposure of samples, whose dimensions are equivalent to those of a standard 35-mm Petri dish, positioned close to the antenna aperture, i.e., 10-20 wavelengths. The antenna prototype is fabricated in metallized foam. The realized exposure efficiency of the sample exceeds 55% (if estimated for an exposure uniformity better than - 0.5 dB). To validate the numerical results, the field intensity profiles on the surface of a high-water-content phantom have been experimentally obtained using a high-resolution infrared camera. Compared to the standard open-ended waveguide and horn antennas, typically used for millimeter-wave dosimetry, a twofold advantage of the proposed CRA is demonstrated, namely, the improvement of the exposure efficiency by a factor of 1.5 to 2 with a simultaneous reduction of the exposure distance by a factor of 8-2, respectively, depending on the type of the reference antenna. These advantages make the proposed CRA an excellent candidate for 60-GHz short-range exposure systems for in vitro bioelectromagnetic studies.
ISSN: 0018-9480

hal-00874349
https://hal.archives-ouvertes.fr/hal-00874349
DOI : 10.1109/TMTT.2013.2255619

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
In the mid-afternoon of 15 July 2007, during the Convective and Orographically induced Precipitation Study (COPS), in a very warm and dry environment, an isolated, short-lived, deep convective system developed over the southern Black Forest. Most of the high-resolution, convection-permitting models involved in COPS were unable to capture this event whereas the Meso-NH forecast was quite skilful. To assess the Meso-NH performance further, the model results were carefully checked against the various and numerous COPS observations. In full agreement with clear-air radar observations, model results underlined the triggering role of a low-level convergence line that developed in the lee of the Feldberg. The main departure from the observations was found to be in the low-level moisture fields, which appeared significantly moister in the model than in the observations and also slightly moister than in the other models. Sensitivity studies showed that this departure from the observations was strongly controlled by the initial surface moisture conditions. When the surface moisture was reduced by 20% or replaced by the value derived from a different analysis, the evolution of the planetary boundary layer was more accurately represented while the storm evolution was still correctly captured. These results demonstrate that the quality of the initial forecast cannot be ascribed to the moist bias of the model. It could therefore be hypothesized that the key parameters for a satisfactory forecast of this event lie more in the ability of the model to reproduce the dynamical forcing accurately than in the characteristics of the air-mass instability.
ISSN: 0035-9009

hal-00554400
https://hal.archives-ouvertes.fr/hal-00554400
DOI : 10.1002/qj.710

Éditeur(s) : Université Paris 7 – Denis Diderot
Résumé : Sea surface salinity (SSS) influences numerous oceanic phenomena, for instance surface water ventilation, deep water formation and thermohaline circulation. SSS also controls some ocean-atmosphere coupled processes, such as the intensity of freshwater flux and the penetration of heat flux and turbulence. Salinity is more difficult to measure than temperature from in situ surveys, which results in 20 times less data being currently available. Moreover, sea surface temperature (SST) is routinely estimated from satellites, which is not possible yet for SSS. Two space missions will fill this gap soon: SMOS from the European Space Agency and Aquarius/SAC-D from NASA and CONAE. To contribute to the SMOS project, we propose a method for estimating SSS from current satellite observations and for studying the mechanisms governing its variability. We developed a simplified model of the ocean mixed layer, based on the "slab mixed layer" formulation (Frankignoul et Hasselmann, 1977). This 2D horizontal model is implemented over the global ocean, using a near 100 km resolution, and integrated during a climatological year. Air-sea fluxes are taken from the ECMWF meteorological model (ERA40 reanalysis) and the surface currents are provided by altimeter data (SSALTO-DUACS analysis). The mixed layer depth (MLD) is derived from SST observations, using an original inversion technique. The MLD fields obtained from this inversion are well correlated to in situ estimates. This effective depth represents the air-sea fluxes penetration and ensures consistency between fluxes, les currents and SST. We first validate the simulation through examination of the heat balance in north-eastern Atlantic, by comparing to measurements and models from the POMME experiment. Then we study the salinity balance in the global domain, in terms of its geographical distribution and seasonal evolution. Equilibrium between the various processes appears generally more complex than for temperature. Noteworthy, the role of atmospheric flux is less predominant (22%), while geostrophic advection (33%) and diapycnal mixing (22%) contribute more strongly. Our results indicate this model succeeds in reconstructing SSS variability over most of the oceans. Daily SSS variations are also simulated, whereas they are not represented in current observed data at a global scale. Owing to its simplicity and fast computation, the model will be useful to the SMOS mission. It can help for the measurement calibration/validation and provide a first guess estimate to the sophisticated algorithm required for SSS restitution.
La salinité de surface des océans (SSS) influence de nombreux phénomènes océaniques, parmi lesquels la ventilation des eaux de surface, la formation d'eaux profondes et la circulation thermohaline. Elle détermine aussi certains processus couplés océan-atmosphère, notamment l'intensité du flux d'eau douce, la pénétration du flux de chaleur et de la turbulence. La mesure in situ de salinité est plus compliquée que celle de température, si bien qu'on dispose actuellement de 20 fois moins de données pour cette propriété. De plus, la température de surface (SST) est couramment estimée par satellite, ce qui n'est pas encore le cas de la SSS. Deux missions spatiales vont prochainement combler cette lacune : le satellite SMOS de l'Agence Spatiale Européenne et le satellite Aquarius/SAC-D de la NASA et de la CONAE. En préparation du projet SMOS, nous proposons une méthode pour estimer la SSS à partir des observations satellitaires actuelles et étudier les mécanismes de sa variabilité. Nous avons développé un modèle simplifié de couche mélangée océanique, basé sur la formulation "slab mixed layer" (Frankignoul et Hasselmann, 1977). Ce modèle 2D horizontal est implémenté sur l'océan global, avec une résolution proche de 100 km, et intégré au cours d'une année climatologique. Les flux air-mer proviennent du modèle météorologique ECMWF (réanalyse ERA40) et les courants de surface sont issus de l'altimétrie (analyse SSALTO-DUACS). La profondeur de la couche mélangée (MLD) est dérivée des observations de SST, grâce à une technique d'inversion originale. La MLD obtenue par inversion est bien corrélée aux estimations basées sur des données in situ. Cette profondeur effective représente la pénétration des flux air-mer et assure la cohérence entre les flux, les courants et la SST. La simulation est d'abord validée en examinant le bilan de chaleur dans l'Atlantique Nord-Est, par comparaison aux mesures et aux modèles de l'expérience POMME. Puis le bilan de salinité est étudié dans le domaine global, en termes de distribution géographique et d'évolution saisonnière. L'équilibre entre les différents processus est généralement plus complexe que pour la température. Notamment, le rôle du flux atmosphérique est moins prépondérant (22%), tandis que l'advection géostrophique (33%) et le mélange diapycnal (22%) contribuent fortement. Nos résultats montrent que ce modèle parvient à restituer la variabilité de la SSS sur la majeure partie des océans. Le modèle simule aussi les variations journalières de SSS, qui ne sont pas représentées à l'échelle globale dans les observations actuelles. Grâce à sa simplicité et à sa rapidité, le modèle pourra être utile dans le cadre de SMOS. Il pourra aider à la calibration/validation de la mesure et fournir une estimation a priori pour l'algorithme complexe nécessaire à la restitution de la SSS.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2006/these-2302.pdf
http://archimer.ifremer.fr/doc/00000/2302/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
The benefit of assimilating high spatial and temporal resolution Global Positioning System (GPS) zenith tropospheric delay (ZTD) observations within a high-resolution numerical weather prediction (NWP) system is evaluated during IOP 9 of the Convective and Orographically-induced Precipitation Study (COPS) campaign. In the framework of the international COPS field experiment, which took place from June to August 2007, a dense GPS network was deployed in the Vosges mountain region in eastern France and in the Black Forest region in southwestern Germany. GPS ZTD observations collected during the COPS field campaign, in addition to the European operational GPS data, are assimilated into the AROME/3D-Var system. We investigate the impact of assimilating these GPS ZTD observations on the forecast of convective systems that travelled over eastern France during the three days of COPS IOP 9 (18-20 July 2007). The results show a clear positive impact on short-range quantitative precipitation forecasts when GPS ZTD observations are assimilated. The impact is most important on 19 July 2007 (IOP 9b). The present study benefits from additional validation measurements collected during the COPS campaign. In particular we find that the assimilation of ZTD data induces changes in the low-to-middle tropospheric water vapour vertical structure that are consistent with water vapour measurements from radiosonde and airborne lidar. As most of the improvement is gained by assimilating GPS ZTD observations from the European operational GPS network, this study opens up encouraging horizons for the assimilation of GPS ZTD in new high-resolution operational NWP systems
ISSN: 0035-9009

hal-00424350
https://hal.archives-ouvertes.fr/hal-00424350
DOI : 10.1002/qj.508

Éditeur(s) : Université de Pau et des Pays de l'Adour
Résumé : In a context of decline of European eel (Anguilla anguilla L.) and search for biological markers of habitat use and quality, a multidisciplinary approach was engaged on the Adour estuary and its associated wetlands. Two axes were developed. The first axe aimed at highlighting the successive presence of the species in different ecosystems based on the otolith elemental composition. The second aimed at the evaluation of the chemical pressure underwent by eels based on the contaminant bioconcentration in soft tissues and the early molecular response to the chemical stress. With a view to the analyses of otolith elemental composition taking into account the 3D structure, the low elemental concentration in the matrix and keeping the finest spatial resolution, four micro sampling strategies and multi elemental analyses using femtosecond laser ablation ICP-MS were tested (crater, 1D scan, 2D scan, flash ablation). The strategy showing the best compromise according to the objectives (continuous recording, multi elemental approach) was applied on otolith of yellow eels from the Adour. The simultaneous use of Sr and Ba profiles, after validation, represents a new tool, easy, fast and reliable for the reconstruction of freshwater and brackish ecosystems use by eel avoiding misinterpretation due to vaterite inclusions. Three major behaviors were highlighted on the Adour: a residency in brackish water, a residency in freshwater and nomad behavior. The last one is illustrated by a shift to brackish water after three to four years spent in freshwater. Simultaneously, the study of inorganic and organic contamination of eel soft tissues showed that sampled wetlands are moderately contaminated. These results were confirmed by the first estimation, in wild conditions, of the early response to the chemical stress using the hepatic expression of CYP1A1 gene measured by real time RT-PCR. Conversely, in the downstream part of the Adour estuary, Hg loads in eels, especially methyl mercury, and PCBs analyses indicate values that need further investigations considering the European norms of consumption. The comparison of the different markers used (heavy metal and organochlorinated compounds contamination of soft tissues, condition index) support a lower quality of the estuary despite higher eel growth rate on this site. This study supports the use of numerous markers in integrated studies in order to understand and specify the relationships between eels and their continental growth zones.
Dans un contexte de déclin de l'anguille européenne (Anguilla anguilla L.) et de recherche de marqueurs biologiques retraçant la fréquentation des divers habitats et renseignant sur la qualité de ceux-ci, une approche pluridisciplinaire a été mise en place sur l'estuaire de l'Adour et ses zones humides. Deux axes ont été privilégiés. Le premier cherchait à visualiser la présence successive de l'espèce dans différents écosystèmes en se basant sur la composition élémentaire des otolithes. Le deuxième avait pour but d'évaluer la pression chimique inorganique et organique subie par l'anguille dans les zones d'études en s'appuyant sur la bioconcentration des contaminants dans les tissus mous et la réponse moléculaire précoce au stress chimique. En vue des analyses de la composition élémentaire des otolithes et pour répondre au mieux à la structure en trois dimensions, à la faible concentration des éléments dans la matrice tout en conservant une résolution spatiale la plus fine possible, quatre stratégies de micro-échantillonnage et d'analyses multiélémentaires par ablation laser femtoseconde ICP-MS ont été testées (cratère, scan 1D, scan 2D, ablation flash). La méthodologie présentant le meilleur compromis par rapport aux objectifs fixés (enregistrement continu, approche multiélémentaire) a ensuite été appliquée sur les otolithes d'anguilles jaunes du Bas-Adour. L'utilisation simultanée des profils continus de Sr et de Ba, après validation, constitue un outil facile d'utilisation, rapide et fiable pour reconstruire les historiques de fréquentation des différents écosystèmes estuariens et dulçaquicoles par l'anguille tout en s'affranchissant des problèmes potentiels liés aux inclusions de vatérite, un polymorphe du carbonate de calcium. Trois grands types de comportement ont pu être mis en évidence sur l'Adour : résidence en eau saumâtre, résidence en eau douce et nomadisme. Ce dernier est plus particulièrement illustré par un mouvement marqué vers l'eau saumâtre pour des individus ayant passé de trois à quatre ans dans l'eau douce. Parallèlement, l'étude de la contamination organique et inorganique des tissus mous de l'anguille a permis de déduire à la faible contamination des zones humides échantillonnées. La première estimation en condition naturelle de la réponse précoce au stress chimique par évaluation de l'expression hépatique du gène CYP1A1 par RT-PCR en temps réel confirme ces résultats. En revanche, dans la partie estuarienne aval de l'Adour, les niveaux en Hg, présent en majorité sous sa forme méthylée dans les anguilles, et l'analyse des PCBs indiquent des valeurs qui suscitent un examen plus approfondi au regard des normes européennes en vigueur. La confrontation des différents descripteurs (contamination des tissus mous par les métaux lourds et organochlorés, indice de condition) utilisés conforte la qualité moindre de la zone estuarienne malgré des performances de croissance de l'anguille favorisées sur ces sites. Ainsi, cette étude supporte l'intérêt de la mise en oeuvre de descripteurs multiples utilisés (niveaux de métaux lourds et organochlorés dans les tissus mous, réponse moléculaire au stress chimique, microchimie de l'otolithe, indice de condition, taux de croissance) dans des approches intégrées pour comprendre et préciser les relations existantes entre l'anguille et ses zones de croissance continentales.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2009/these-7381.pdf
http://archimer.ifremer.fr/doc/00000/7381/

Éditeur(s) : American Geophysical Union
Résumé : Microwave Sea Surface Salinity (SSS) measurements can be performed by isolating the emissivity response to salinity changes from numerous geophysical effects, including surface temperature and wind waves. At L-band frequencies (1 to 2 GHz), the sensitivity to SSS is sufficient but it falls off quickly as frequency is increased. Nevertheless, methods using higher microwave frequencies with much lower SSS sensitivity than at L band, can already be tested. In particular, combining 6 and 10 GHz data in vertical polarization efficiently minimizes sea surface roughness and thermal impacts. Using AMSR-E data, the retrieved bi-monthly maps of SSS at 0.5 degrees resolution over the region of the Amazon plume show relative accuracy in-line with the future L-band dedicated mission objectives. Citation: Reul, N., S. Saux-Picart, B. Chapron, D. Vandemark, J. Tournadre, and J. Salisbury (2009), Demonstration of ocean surface salinity microwave measurements from space using AMSR-E data over the Amazon plume, Geophys. Res. Lett., 36, L13607, doi:10.1029/2009GL038860.
Geophysical Research Letters ( GRL ) (0094-8276) (American Geophysical Union), 2009-07 , Vol. 36 , P. 1-5

Droits : 2009. American Geophysical Union. All Rights Reserved
http://archimer.ifremer.fr/doc/2009/publication-6620.pdf
DOI:10.1029/2009GL038860
http://archimer.ifremer.fr/doc/00000/6620/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
The Convective and Orographically-driven Precipitation Study (COPS) carried out in summer 2007 over northeastern France and southwestern Germany provided a fairly comprehensive description of the low-troposphere water-vapour field, thanks in particular to the deployment of two airborne differential absorption lidar systems. These lidar observations were assimilated using the 3D-Var assimilation system of the Application of Research to Operations at MEsoscale (AROME) numerical weather prediction mesoscale model. The assimilation was carried out for the period 4 July-3 August by running a three-hour forward intermittent assimilation cycle. First, the impact of the lidar observations was assessed by comparing the analyses with a set of more than 200 independent soundings. The lidar observations were found to have a positive impact on the analyses by reducing the dry bias in the first 500 m above ground level and by diminishing the root-mean-square error by roughly 15% in the first km. Then the impact of the lidar observations was assessed by comparing the precipitation forecasts (obtained with and without the lidar observations for the period 15 July-2 August) with the gridded precipitation observations provided by the Vienna Enhanced Resolution Analysis. In general, the impact was found to be positive but not significant for the 24 h precipitation and positive and significant for the 6 h precipitation, with an improvement lasting up to 24 h. Some selected case studies show that the improvement was obtained through a better depiction of convection initiation or through a more accurate positioning of the precipitation systems
ISSN: 0035-9009

hal-00659497
https://hal.archives-ouvertes.fr/hal-00659497
DOI : 10.1002/qj.1864

Éditeur(s) : HAL CCSD Society for the Study of Reproduction
Résumé : International audience
Matrix-assisted laser desorption/ionization (MALDI) tissue imaging mass spectrometry is particularly promising among the numerous applications of mass spectrometry. It is used for probing and analyzing the spatial arrangement of a wide range of molecules, including proteins, peptides, lipids, drugs, and metabolites, directly in thin slices of tissue. In the field of proteomics, the technology avoids tedious and time-consuming extraction and fractionation steps classically required for sample analysis. MALDI imaging mass spectrometry is increasingly recognized as a powerful method for clinical proteomics, particularly in cancer research. The technology has particular potential for the discovery of new tissue biomarker candidates, classification of tumors, early diagnosis or prognosis, elucidating pathogenesis pathways, and therapy monitoring. Over recent years, MALDI imaging mass spectrometry has been used for molecular profiling and imaging directly in male and female reproductive tissues. This review will consider some of the recent publications in the field, addressing a range of issues covering embryo development, gene expression product profiling during gametogenesis, and seeking and identifying biomarkers of reproductive cancers. The wealth of advances in mass spectrometry imaging will inevitably attract biologists and clinicians as the advantages and power of this technology become more widely known. This review will also discuss bottlenecks and the many technical issues that remain to be resolved before laboratories in the field can adopt the technology. We foresee that MALDI imaging mass spectrometry will have a major impact in reproductive research by opening new avenues to the understanding of various molecular mechanisms and the diagnosis of reproductive pathologies.
ISSN: 0006-3363

hal-00877851
https://hal.archives-ouvertes.fr/hal-00877851
DOI : 10.1095/biolreprod.111.094896
PUBMED : 22156474

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
Our knowledge and understanding of the 3-D lithospheric structure of the Himalayas and the Tibetan Plateau is still challenging although numerous geophysical studies have been performed in the region. The GOCE satellite mission has the ambitious goal of mapping Earth's gravity field with unprecedented precision (i.e. an accuracy of 1-2 mGal for a spatial resolution of 100 km) to observe the lithosphere and upper-mantle structure. Consequently, it gives new insights in the lithospheric structure beneath the Himalayas and the Tibetan Plateau. Indeed, the GOCE gravity data now allow us to develop a new strategy for joint gravimetry-seismology inversion. Combined with teleseismic data over a large region in a joint inversion scheme, they will lead to lithospheric velocity-density models constrained in two complementary ways. We apply this joint inversion scheme to the Hi-CLIMB (Himalayan-Tibetan Continental Lithosphere during Mountain Building) seismological network which was deployed in South Tibet and the Himalayas for a 3-yr period. The large size of the network, the high quality of the seismological data and the new GOCE gravity data set allow us to image the entire lithosphere of this active area in an innovative way. We image 3-D low velocity and density structures in the middle crust that fit the location of discontinuous low S-velocity zones revealed by receiver functions in previous geophysical studies. In the deeper parts of our velocity model we image a positive anomaly interpreted to be the heterogenous Indian lithosphere vertically descending beneath the centre of the Tibetan Plateau.
ISSN: 0956-540X

hal-00858024
https://hal.archives-ouvertes.fr/hal-00858024
DOI : 10.1093/gji/ggs110

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
In this paper we investigate finite-frequency effects in crustal tomography. We developed an inversion procedure based on an exact numerical computation of the sensitivity kernels. In this approach we compute the 3D travel-time sensitivity kernels by using (1) graph theory and an additional bending to estimate accurately both rays and travel-times between source/receiver and diffraction points and (2) paraxial ray theory to estimate the amplitude along theses rays. We invert both the velocity and the hypocentre parameters, using these so-called banana-doughnut kernels and the LSQR iterative solver. We compare the ray-theoretical and the finite-frequency tomography to image the intermediate structures beneath the Gulf of Corinth (Greece), which has long been recognized as the most active continental rifting zone in the Mediterranean region. Our dataset consists of 451 local events with 9233 P- firstarrival times recorded in the western part of the Gulf (Aigion area) in the framework of the 3F-Corinth European project. Previous tomographic images showed a complex velocity crustal model and a low-dip surface that may accommodate the deformation. Accurate velocity models will help to better constrain the rifting process, which is still a subject of debate. The main results of this study show that finite-frequency tomography improves crustal tomographic images by providing better resolved images of the 3D complicated velocity structure. Because the kernels spread the information over a volume, finite-frequency tomography results in a sharpening of layer boundaries as we observed for the shallower part of the crust (down to 5 km depth) beneath the Gulf of Corinth.
ISSN: 0016-8025

insu-00354702
https://hal-insu.archives-ouvertes.fr/insu-00354702
DOI : 10.1111/j.1365-2478.2007.00683.x

Éditeur(s) : Elsevier Science Bv
Résumé : In this study, the Capbreton canyon head, just off the coast, is investigated using high-resolution multibeam bathymetry datasets, sediment samples and numerical modeling. The HR bathymetry analysis reveals a morphological connection between the longshore trough and the head of the canyon. The analysis of recent sediment samples shows a clear correlation between the sediment of the canyon head and that of the nearshore. Hydrodynamic modeling (a coupled wave-flow model) shows that for high-energy waves, the rotational nature of surf-zone circulation reverses and wave-induced currents have the potential to transport large quantities of nearshore sands toward the canyon head. All these arguments support the assumption that the canyon head captures a part of the sand transported by longshore drift. Over the 15 years of observation (1998–2013), time-lapse bathymetry shows that the floor of the canyon head and one lateral gully network experienced significant morphological reworking. In terms of hazards, despite this strong activity, the position of the canyon head and the profile of its longitudinal slope remained stable and appears as a comforting factor. However, the activity of unusual lateral erosions needs to be monitored.
Marine Geology (0025-3227) (Elsevier Science Bv), 2014-05 , Vol. 351 , P. 1-12

Droits : 2014 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00180/29118/27524.pdf
DOI:10.1016/j.margeo2014.03.001
http://archimer.ifremer.fr/doc/00180/29118/

Éditeur(s) : HAL CCSD Elsevier
Résumé : We present the hierarchical matrix (H-matrix) technique combined with the adaptive cross-approximation (ACA) applied to a three-dimensional (3D) elastostatic problem using the boundary element method (BEM). This is used in structural geology and geomechanics for the evaluation of the deformation and perturbed stress field associated with surfaces of displacement discontinuity. Such optimization significantly reduces (i) the time and memory needed for the resolution of the system of equations, but more importantly (ii) the time needed for the post-processing at observation points where the deformation and the perturbed stress field are evaluated. Specifically, it is shown that the H-matrix structure used with the ACA, clearly captures the kernel smoothness during the post-processing stage according to the field point positions, and optimizes the computation accordingly. Combined with the parallelization on multi-core processors, this technique allows intensive computations to be done on personal desktop and laptop computers. Numerical simulations are presented, showing the advantages of such optimizations compared to the standard method.
ISSN: 0955-7997

hal-00561032
https://hal.archives-ouvertes.fr/hal-00561032
DOI : 10.1016/j.enganabound.2009.10.016

Éditeur(s) : HAL CCSD American Geophysical Union (AGU)
Résumé : International audience
Nowadays, technological advances in satellite imagery measurements as well as the development of dense geodetic and seismologic networks allow for a detailed analysis of surface deformation associated with active fault seismic cycle. However, the study of earthquake dynamics faces several limiting factors related to the difficulty to access the deep source of earthquake and to integrate the characteristic time scales of deformation processes that extend from seconds to thousands of years. To overcome part of these limitations and better constrain the role and couplings between kinematic and mechanical parameters, we have developed a new experimental approach allowing for the simulation of strike-slip fault earthquakes and analyze in detail hundreds of successive seismic cycle. Model rheology is made of multilayered visco-elasto-plastic analog materials to account for the mechanical behavior of the upper and lower crust and to allow simulating brittle/ductile coupling, postseismic deformation phase and far-field stress transfers. The kinematic evolution of the model surface is monitored using an optical system, based on subpixel spectral correlation of high-resolution digital images. First, results show that the model succeed in reproducing the deformation mechanisms and surface kinematics associated to the main phases of the seismic cycle indicating that model scaling is satisfactory. These results are comforted by using numerical algorithms to study the strain and stress distribution at the surface and at depth, along the fault plane. Our analog modeling approach appears, then, as an efficient complementary approach to investigate earthquake dynamics.
ISSN: 0278-7407

hal-01174176
https://hal.archives-ouvertes.fr/hal-01174176
DOI : 10.1002/2014TC003701

Éditeur(s) : HAL CCSD European Geosciences Union
Résumé : International audience
Impact of GPS (Global Positioning System) data assimilation is assessed here using a high-resolution numerical weather prediction system at 2.5 km horizontal resolution. The Zenithal Tropospheric Delay (ZTD) GPS data from mesoscale networks are assimilated with the 3DVAR AROME data assimilation scheme. Data from more than 280 stations over the model domain have been assimilated during 15-day long assimilation cycles prior each of the two studied events. The results of these assimilation cycles show that the assimilation of GPS ZTD with the AROME system performs well in producing analyses closer to the ZTD observations in average. Then the impacts of assimilating GPS data on the precipitation forecast have been evaluated. For the first case, only the AROME runs starting a few hours prior the triggering of the convective system are able to simulate the convective precipitation. The assimilation of GPS ZTD observations improves the simulation of the spatial extent of the precipitation, but slightly underestimates the heaviest precipitation in that case compared with the experiment without GPS. The accuracy of the precipitation forecast for the second case is much better. The analyses from the control assimilation cycle provide already a good description of the atmosphere state that cannot be further improved by the assimilation of GPS observations. Only for the latest day (22 November 2007), significant differences have been found between the two parallel cycles. In that case, the assimilation of GPS ZTD allows to improve the first 6 to 12 hours of the precipitation forecast.
ISSN: 0992-7689

hal-00403847
https://hal.archives-ouvertes.fr/hal-00403847
https://hal.archives-ouvertes.fr/hal-00403847/document
https://hal.archives-ouvertes.fr/hal-00403847/file/angeo-27-2739-2009.pdf