Éditeur(s) : 3e Rencontres Scientifiques Internationales du contrat de baie de la rade de Brest. Brest 14-16 mars 1995
Résumé : Aquaculture production of scallop has been identified by a series of technical operations during the past ten years programme under a partnership involving the fishermen organizations with regional and national grants. 3 million juveniles have been produced annually, giving a potential recapture by fishing of 100 to 120 tonnes 3 years later. Results in terms of technical and economical approach have pointed out the principal unknown factors responsable for high costs. 7he pilot programme aims to increase the production to reach a level of 5 million juveniles to support the fishery of the rade de Brest and induce new management of the resources. Two priorities were selected, control of the reproduction in the hatchery to obtain reliable larval and postlarval rearing during a larger period of the year, mainly during summer, and improvement of survival rate of the juveniles by minimizing stress when manipulating the animals. But biological and ecological mechanisms are still poorly understoodfor scallop and generally bibvalves and the last two years have shown unchanged results. The technical pathways shows interactions between the different steps of the production of juveniles where different teams operate separately. Management of the livestock has to be developed to increase the survival rate by better breeding but also to reduce the loss by adapted and coordinated practices. Recapture results indicate that fishery strategies depend also on the production of juvenile, and could orientate the management of the hatchery.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00044/15494/12860.pdf
http://archimer.ifremer.fr/doc/00044/15494/

Éditeur(s) : Edp Sciences S A
Résumé : Reared sea bass were submitted to six stressful situations: hyperoxia with or without hypercapnia, increased stocking density in an open flow or recirculating system, transfer to another tank and nodavirus injection. The potentially negative impact of these factors on the lives of sea bass was investigated by measuring 9 water parameters and 19 fish parameters including total serum protein (TSP). TSP has already been used to evaluate stress. The present study investigates data of previous and new experiments, concentrating on the potential use of TSP as a routine indicator to assess welfare in sea bass reared on fish farms. In the current experiment, oxygen and carbon dioxide were seen to affect levels of TSP, but alterations were too erratic to enable proper comparison, probably because they are normal components of the fish environment and become toxic only by dose increase. TSP decreased when stocking density increased. After transfer to another tank, TSP decreased to 14% for three weeks and then increased during the fourth week through compensative overproduction, before returning to normal levels after 2 months. The results confirmed that transfer is an important stress factor for fish, with cumulative effects for successive transfers. TSP alteration of nodavirus-injected fish depends on the type of symptoms, which can be divided into 3 groups: (i) dying fish, in which TSP increased sharply due to over-production of protein involved in non-specific defences and inflammation, then decreased dramatically before death; (ii) whirling fish, a group that included both fish that later died, in which TSP decreased, and fish that subsequently survived, in which TSP increased due to development of specific immunity; and (iii) asymptomatic fish, in which TPS was similar to control levels and which were probably insensitive to nodavirus and/or had developed defences. In this paper, different mechanisms of TSP alteration are proposed and the interest of TSP as a field parameter is discussed. TSP is a non-destructive parameter that is robust, easy to measure everywhere and cheap, representing a suitable way of monitoring the overall welfare of fish by its regular increase. It can be used only as a "warning" of poor rearing conditions, however, and further investigations would be needed to identify the specific stress or health disorder.
Aquatic Living Resources (0990-7440) (Edp Sciences S A), 2011-04 , Vol. 24 , N. 2 , P. 121-127

Droits : EDP Sciences, IFREMER, IRD 2011
http://archimer.ifremer.fr/doc/00043/15382/12740.pdf
DOI:10.1051/alr/2011130
http://archimer.ifremer.fr/doc/00043/15382/

Éditeur(s) : Elsevier
Résumé : We investigated the influence of bioturbation by macrofauna on the vertical distribution of living (stained) benthic foraminifera in marine intertidal sediments. We investigated the links between macrofaunal bioturbation and foraminiferal distribution, by sampling from stations situated on a gradient of perturbation by oyster-farming, which has a major effect on benthic faunal assemblages. Sediment cores were collected on the French Atlantic coast, from three intertidal stations: an oyster farm, an area without oysters but affected by oyster biodeposits, and a control station. Axial tomodensitometry (CT-scan) was used for three-dimensional visualization and two-dimensional analysis of the cores. Biogenic structure volumes were quantified and compared between cores. We collected the macrofauna, living foraminifera, shells and gravel from the cores after scanning, to validate image analysis. We did not investigate differences in the biogenic structure volume between cores. However, biogenic structure volume is not necessarily proportional to the extent of bioturbation in a core, given that many biodiffusive activities cannot be detected on CT-scans. Biodiffusors and larger gallery-diffusors were abundant in macrofaunal assemblage at the control station. By contrast, macrofaunal assemblages consisted principally of downward-conveyors at the two stations affected by oyster farming. At the control station, the vertical distribution of biogenic structures mainly built by the biodiffusor Scorbicularia plana and the large gallery-diffusor Hediste diversicolor was significantly correlated with the vertical profiles of living foraminifera in the sediment, whereas vertical distributions of foraminifera and downward-conveyors were not correlated at the station affected by oyster farming. This relationship was probably responsible for the collection of foraminifera in deep sediment layers (> 6 cm below the sediment surface) at the control station. As previously suggested for other species, oxygen diffusion may occur via the burrows built by S. plana and H. diversicolor, potentially increasing oxygen penetration and providing a favorable microhabitat for foraminifera in terms of oxygen levels. By contrast, the absence of living foraminifera below 6 cm at the stations affected by oyster farming was probably associated with a lack of biodiffusor and large gallery-diffusor bioturbation. Our findings suggest that the effect of macrofaunal bioturbation on the vertical distribution of foraminiferal assemblages in sediments depends on the effects of the macrofauna on bioirrigation and sediment oxidation, as deduced by Eh values, rather than on the biogenic structure volume produced by macrofauna. The loss of bioturbator functional diversity due to oyster farming may thus indirectly affect infaunal communities by suppressing favorable microhabitats produced by bioturbation.
Journal of Experimental Marine Biology and Ecology (0022-0981) (Elsevier), 2009-03 , Vol. 371 , N. 1 , P. 20-33

Droits : 2009 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/2009/publication-6146.pdf
DOI:10.1016/j.jembe.2008.12.012
http://archimer.ifremer.fr/doc/00000/6146/

Éditeur(s) : Elsevier Science Bv
Résumé : Recent advances in technologies have lead to a vast influx of data on movements, based on discrete recorded position of animals or fishing boats, opening new horizons for future analyses. However, most of the potential interest of tracking data depends on the ability to develop suitable modelling strategies to analyze trajectories from discrete recorded positions. A serious modelling challenge is to infer the evolution of the true position and the associated spatio-temporal distribution of behavioural states using discrete, error-prone and incomplete observations. In this paper, a Bayesian Hierarchical Model (HBM) using Hidden Markov Process (HMP) is proposed as a template for analyzing fishing boats trajectories based on data available from satellite-based vessel monitoring systems (VMS). The analysis seeks to enhance the definition of the fishing pressure exerted on fish stocks, by discriminating between the different behavioural states of a fishing trip, and also by quantifying the relative importance of each of these states during a fishing trip. The HBM approach is tested to analyse the behaviour of pelagic trawlers in the Bay of Biscay. A hidden Markov chain with a regular discrete time step is used to model transitions between successive behavioural states (e.g., fishing, steaming, stopping (at Port or at sea)) of each vessel. The parameters of the movement process (speed and turning angles) are defined conditionally upon the behavioural states. Bayesian methods are used to integrate the available data (typically VMS position recorded at discrete time) and to draw inferences on any unknown parameters of the model. The model is first tested on simulated data with different parameters structures. Results provide insights on the potential of HBM with HMP to analyze VMS data. They show that if VMS positions are recorded synchronously with the instants at which the process switch from one behavioural state to another, the estimation method provides unbiased and precise inferences on behavioural states and on associated movement parameters. However, if the observations are not gathered with a sufficiently high frequency, the performance of the estimation method could be drastically impacted when the discrete observations are not synchronous with the switching instants. The model is then applied to real pathways to estimate variables of interest such as the number of operations per trip, time and distance spent fishing or travelling. (C) 2010 Elsevier B.V. All rights reserved.
Ecological Modelling (0304-3800) (Elsevier Science Bv), 2010-07 , Vol. 221 , N. 15 , P. 1757-1769

Droits : 2010 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00009/11993/9342.pdf
DOI:10.1016/j.ecolmodel.2010.04.005
http://archimer.ifremer.fr/doc/00009/11993/

Éditeur(s) : HAL CCSD Ecological Society of America
Résumé : Tropical plant diversity is extraordinarily high at both local and regional scales. Many studies have demonstrated that natural enemies maintain local diversity via negative density dependence, but we know little about how natural enemies influence beta-diversity across habitats and/or regions. One way herbivores could influence plant beta-diversity is by driving allocation trade-offs that promote habitat specialization across resource gradients. We therefore predicted that increasing resource availability should be accompanied by increasing herbivory rates and decreasing plant allocation to defense. Second, relative abundances within plant lineages are predicted to reflect patterns of habitat specialization and allocation trade-offs. A phylogenetic context is vital not only to compare homologous plant traits (including defense strategies) across habitat types, but also to connect evolutionary trade-offs to patterns of species diversification in each phylogenetic lineage. We tested these predictions for trees in white-sand, clay terra firme, and seasonally flooded forests in Peru and French Guiana that represent the range of soil fertility, forest structure, and floristic compositions found throughout the Amazon region. We established 74 0.5-ha plots in these habitats and sampled all trees. Within 12 representative plots we marked newly expanding leaves of 394 saplings representing 68 species, including the most abundant species in each plot in addition to species from five focal lineages: Swartzia and Inga (Fabaceae), Protieae (Burseracaeae), Bombacoideae (Malvaceae), and Micropholis (Sapotaceae). We measured total leaf production rates for each sapling and calculated relative herbivory impact as the ratio between herbivory rate and leaf production rate. Herbivory rates averaged 2.1% per month, did not correlate with leaf production rate, and were similar across habitats. Relative herbivore impacts exceeded leaf production rates for most species. Leaf production rate averaged 2.8%, was significantly higher in seasonally flooded forests than the other two habitats, and exhibited significant correlations with specific leaf area. Species with high herbivory rates exhibited significantly lower relative abundances in terra firme forests. Overall, focal species within lineages present contrasting patterns regarding their herbivory rates and leaf production rate within habitats. These results highlight why a lineage-based approach is necessary when attempting to connect hypotheses regarding evolutionary trade-offs to community assembly patterns.
ISSN: 0012-9658

hal-01032418
https://hal.archives-ouvertes.fr/hal-01032418

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This study presents microstructural evidence for deformation-controlled melt organization and for changes in olivine deformation associated with the presence of melt in an 80 m vertical section of the crust-mantle transition zone in the Oman ophiolite. This zone represents an 'end member' case for analyzing feedbacks between deformation and melt distribution in the upper mantle, since it experienced strong shear strains in presence of large melt fractions. It is characterized by a subhorizontal compositional layering at the mm to meter scale, from weakly impregnated dunites to olivine-rich gabbros, which parallels a pervasive foliation containing a strong stretching lineation. The parallelism between the compositional layering and the foliation, the diffuse limits of the layers, the alignment of elongated plagioclase-rich aggregates devoid of internal deformation structures with the elongation of olivine crystals in the dunitic layers, and the sharp compositional changes across some, but not all layer limits suggest deformation plays an essential role on the development of the layering. The variation on a mm-scale of the olivine crystal preferred orientation (CPO) symmetry as a function of the modal content: from axial-[100] symmetry in layers with <70% modal olivine to axial-[010] in more gabbroic levels (<40% olivine), which is repeated over the entire section, implies deformation in presence of variable melt fractions. Axial-[100] olivine CPO in olivine-rich layers is consistent with deformation by dislocation creep under high temperature, low pressure, dry conditions. Axial-[010] olivine CPO patterns imply additional sliding along preferentially wetted (010) grain boundaries, increase in the activity of [001] glide, or transpression localized in the melt-rich layers. Since the change in CPO symmetry is not accompanied by dispersion, instantaneous melt fractions must have remained <30-40% in all layers. The continuous variation in olivine CPO symmetry with decreasing olivine content implies therefore that the former depends on the cumulated strain in presence of melt rather than on the instantaneous melt fraction.
ISSN: 0012-821X

hal-00795508
https://hal.archives-ouvertes.fr/hal-00795508
DOI : 10.1016/j.epsl.2012.10.003

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Zelus annulosus is an assassin bug species mostly noted on Hirtella physophora, a myrmecophyte specifically associated with the ant Allomerus decemarticulatus known to build traps on host tree twigs to ambush insect preys. The Z. annulosus females lay egg clutches protected by a sticky substance. To avoid being trapped, the first three instars of nymphs remain grouped in a clutch beneath the leaves on which they hatched, yet from time to time, they climb onto the upper side to group ambush preys. Long-distance prey detection permits these bugs to capture flying or jumping insects that alight on their leaves. Like some other Zelus species, the sticky substance of the sundew setae on their forelegs aids in prey capture. Group ambushing permits early instars to capture insects that they then share or not depending on prey size and the hunger of the successful nymphs. Fourth and fifth instars, with greater needs, rather ambush solitarily on different host tree leaves, but attract siblings to share large preys. Communal feeding permits faster prey consumption, enabling small nymphs to return sooner to the shelter of their leaves. By improving the regularity of feeding for each nymph, it likely regulates nymphal development, synchronizing molting and subsequently limiting cannibalism.
ISSN: 0028-1042

hal-01091981
https://hal.archives-ouvertes.fr/hal-01091981
https://hal.archives-ouvertes.fr/hal-01091981/document
https://hal.archives-ouvertes.fr/hal-01091981/file/Dejean_11543.pdf
DOI : 10.1007/s00114-013-1091-9

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : La tectonique récente, du Tertiaire à l'Actuel, est omniprésente dans l'Est et le Sud-Est asiatique, et s'y manifeste notamment sous la forme de décrochements crustaux de grande ampleur, comme celui du fleuve Rouge. Pour importante qu'elle soit, cette tectonique ne saurait faire oublier les événements orogéniques antérieurs auxquels elle s'est superposée et qui ont largement participé à la construction des confins orientaux de l'Asie. En tout premier lieu, il s'agit de l'événement orogénique qui s'est produit au Trias et qui a eu comme conséquence de rassembler, par collision, des blocs continentaux d'origine gondwanienne, alors séparés par des espaces océaniques dépendant de la Paléotéthys. La distribution actuelle des principaux blocs et microblocs engagés dans ce processus est illustrée sur la Fig. 1.
ISSN: 1631-0713

hal-00411595
https://hal.archives-ouvertes.fr/hal-00411595
DOI : 10.1016/j.crte.2007.12.003

Résumé : The theory of the evaluation of discards applied in phase 1 to the main eight species is described. Then, for each one, the biological parameters are calculated and diagnosis based on length cohorts analysis JONES (1981) are proposed The gadoids, whiting and cod, are heavily exploited and the catches are always recruitment dependant. The bottom species (monks, megrim, rays and Nephrops) are fully exploited or lightlhy over - exploited. Using the fisheries statistics of the data basis about the Celtic Sea, a first classification of fleets is proposed with the individual fishing powers.
La théorie de la technique d'évaluation des rejets utilisée dans la phase 1 est développée et appliquée aux huit espèces principales de la Mer Celtique. Pour chacune, les paramètres biologiques sont réactualisés ou calculés et des diagnostics sont effectués à l'aide de l'analyse de JONES (1981). Les gadidés, merlan et morue sont fortement tributaires des recrutements. L'exploitation du merlu est stable. Les stocks des espèces de fond : baudroies, cardine, raie fleurie et langoustine sont pleinement exploités ou légèrement surexploités. Le diagnostic d'ensemble est rassurant. Une première classification des flottilles basée sur les puissances de pêche est proposée.

Droits : 1989 Ifremer
http://archimer.ifremer.fr/doc/1989/rapport-1562.pdf
http://archimer.ifremer.fr/doc/00000/1562/

Éditeur(s) : HAL CCSD Wiley Open Access
Résumé : International audience
Coral disease outbreaks have increased over the last three decades, but their causal agents remain mostly unclear (e.g., bacteria, viruses, fungi, protists). This study details a 14-month-long survey of coral colonies in which observations of the development of disease was observed in nearly half of the sampled colonies. A bimonthly qPCR method was used to quantitatively and qualitatively evaluate Symbiodinium assemblages of tagged colonies, and to detect the presence of Vibrio spp. Firstly, our data showed that predisposition to disease development in general, and, more specifically, infection by Vibrio spp. in Acropora cytherea depended on which clades of Symbiodinium were harbored. In both cases, harboring clade D rather than A was beneficial to the coral host. Secondly, the detection of Vibrio spp. in only colonies that developed disease strongly suggests opportunistic traits of the bacteria. Finally, even if sporadic cases of switching and probably shuffling were observed, this long-term survey does not suggest specific-clade recruitment in response to stressors. Altogether, our results demonstrate that the fitness of the coral holobiont depends on its initial consortium of Symbiodinium, which is distinct among colonies, rather than a temporary adaptation achieved through acquiring different Symbiodinium clades.
ISSN: 2045-7758

hal-01346931
https://hal-uvsq.archives-ouvertes.fr/hal-01346931
https://hal-uvsq.archives-ouvertes.fr/hal-01346931/document
https://hal-uvsq.archives-ouvertes.fr/hal-01346931/file/2016%20Rouze%20EcolEvol.pdf
DOI : 10.1002/ece3.1895

Résumé : En 2013, Le Groupe d'experts Intergouvernemental sur l'Evolution du Climat (GIEC) publie son cinquième rapport concernant les changements climatiques. Il y est souligné que le réchauffement climatique est sans équivoque, et que de nouvelles émissions de gaz à effet de serre impliqueront une poursuite du réchauffement et des changements affectant toutes les composantes du système climatique. En région tropicale, une hausse de la température, ainsi qu'une intensification des événements de sécheresse et de pluviométrie extrêmes sont à prévoir. C'est dans ce contexte que s'inscrit ce travail, dont le but est d'étudier la réponse de la forêt tropicale à ces changements climatiques prédits en Guyane Française. Pour ce faire, j'ai utilisé les données du dispositif de suivi forestier de Paracou pour construire un modèle de dynamique individuel basé sur les traits fonctionnels des arbres. Un modèle de mortalité a d'abord été réalisé puis couplé à un modèle de croissance.Le modèle couplé ainsi construit permet de modéliser la croissance et la mortalité des arbres sur un pas de temps de 2 ans tout en tenant compte de leur ontogénie et de leurs traits fonctionnels. Ce modèle a d'abord été appliqué aux essences commerciales de Guyane Française en forêt naturelle et exploitée en y ajoutant un indice de stress hydrique. Ceci permet de montrer que le stress hydrique fait baisser la croissance et augmenter la mortalité, tandis que l'exploitation a l'effet inverse. Malgré le signal commun, différentes réponses sont observées selon les espèces. Le modèle a ensuite été appliqué à la communauté en forêt naturelle pour identifier les drivers climatiques et les processus impactés. Il ressort que la croissance est impactée par le stress hydrique et la température, et que la mortalité est impactée par le stress hydrique et la pluviométrie totale.Ces résultats ont enfin permis de construire un modèle complet de dynamique forestière climat dépendant, et de simuler l'évolution d'une communauté pendant un siècle selon différents scénarios correspondant aux prédictions du GIEC. Les simulations mettent en évidence une très forte diminution de la croissance, ainsi qu'une plus faible diminution de la mortalité. Ceci entraine une diminution notable de la surface terrière, du diamètre quadratique et de la biomasse fraiche. Une analyse de sensibilité montre que ces changements sont principalement dus à l'augmentation sévère des températures prédites pour le siècle à venir. Des pistes de réflexion sur les enjeux de modélisation et les échelles considérées sont proposées en discussion de ce travail.
In 2013 the intergovernmental panel on climate change (ipcc) publishes its fifth report. This report underlines that an increase of temperature and a strengthening of drought and extreme rainfall are expected in tropical regions. This work was made in this context of climate changes, and aimed to study the response of the rainforest to predicted climate changes. To do this, i used the data from the study site of Paracou French Guiana to build an individual based dynamics model based on the functional traits of trees. This model was first applied to species with a commercial interest in French Guiana, in natural and logged forest and adding a water stress index as predictor. Water stress decreases growth and increases mortality, while logging had the opposite effect. The model was then applied to the community in natural forest for identifying potential climate drivers and impacted processes. Growth is impacted by the water stress and temperature and mortality is imp acted by the water stress and the total rainfall. These results allowed us to build a climate dependent model of forest dynamics and to run simulations of the evolution of a community under different scenarios for the next century. Simulations showed a decrease of growth and a small decrease of mortality. This resulted in a substantial decrease of basal area, squared diameter and fresh biomass.

http://www.theses.fr/2014AGUY0802/document

Éditeur(s) : HAL CCSD Elsevier
Résumé : Carbon emission at volcanic centers requires a constant balance between output (mostly by volcanism, either at plate boundaries or intraplate) and input (mostly at trench settings) of carbon from and to the Earth's mantle. The form of carbon that resides in the mantle is controlled by depth (pressure) and oxygen fugacity, the latter in turn depending on the depth and the concentration of iron in the mantle. In the shallow, lithospheric mantle, carbon is likely to be present in the oxidized form of CO2 (except under cratons where carbon is reduced to graphite or diamond). Below approximately 90 km, in the asthenosphere, the oxidized form of carbon is carbonate, either mineral or melt, depending on the thermal regime. At depths greater than approximately 150 km, the asthenospheric mantle is too reducing for carbon to stay in its oxidized form and only diamond is present, unless there is sufficient hydrogen to form reduced C–H fluids. Hence, the region located in the depth range of 90 to 150 km deep is where carbonatitic melts can most likely be produced and impregnate the surrounding mantle through metasomatism. The upper bound of this region is called the carbonate ledge. This limit prevents carbonate (either solid or molten) from ascending because of degassing and CO2 liberation. The lower bound is a redox front where redox melting (that is, melting caused by oxidation) may take place in an ascending portion of carbon-containing mantle. Carbonatite eruptions and presence of carbonate mineral inclusions in deep-seated diamonds provide evidence that these boundaries can be trespassed in some cases.An analysis of the experimental data that has bearing on silicate melting in the presence of carbon further shows that the carbonate ledge is a melting curve with a negative or flat Clapeyron (dP/dT) slope. In the carbonated ultrabasic (peridotite) systems, the carbonate ledge is located between ~ 2–3 GPa. The ledge divides the pressure–temperature space into a region of low-pressure silicate melt production, and a high-pressure region where carbonatites can be produced. Carbonatitic melts in equilibrium with mantle peridotite have compositions close to dolomitic (approximately equal amounts of Ca and Mg) with a general trend of becoming markedly more magnesian with increasing pressure. Calcic carbonatites may be stable at pressures < 2 GPa if clinopyroxene is absent. At mantle transition zone pressure range, there seems to be a melting temperature decrease (negative fusion slope), which may be caused by the stabilization of majoritic garnet.The carbonated basic (broadly eclogitic) system is more complex than the peridotitic one, because of the strong control of bulk silicate composition on melting temperatures, and hence, on melt composition. In carbonated eclogite systems, we propose that the effect of bulk composition upon all observed features can perhaps be related to silica super-saturation, or lack thereof. In some cases, high calcium (> 80 mol% CaCO3) melts can be produced, making the melting of carbonated eclogites an appealing scenario for the genesis of calcio-carbonatites in the Earth's mantle. Comparison with modeled pressure–temperature paths of subducted oceanic lithosphere shows that fusion of carbonated eclogite at depths shallower than 200 km should be expected for hot (Cascadian-type) subduction thermal regimes. On the other hand, in the case of cooler thermal regimes (Honshu-type, for instance), subducted carbonates may be stable to greater depths in Earth at trench settings, depending on the bulk composition of the system.Furthermore, high-pressure experiments show evidence of a continuum among carbonatitic, kimberlitic, melilititic, and basaltic liquids, for increasing melting degree of carbonated peridotite. This continuum has not been documented in the case of fusion of carbonated eclogite. It may be present, however, when certain sediments are fused, although the silicate melts are granitic to rhyodacitic instead of being kimberlitic in composition. Additional high-pressure work on phase relations in the simple binary system CaCO3–MgCO3 and specific focus on oxide solubility in the vapor phase have the potential to further clarify phase relations on complex silicate–carbonate systems at mantle conditions.
ISSN: 0009-2541

hal-01277770
https://hal.archives-ouvertes.fr/hal-01277770
DOI : 10.1016/j.chemgeo.2015.05.018

Éditeur(s) : HAL CCSD Wiley
Résumé : [b]1.[/b] Plant functional traits, in particular specific leaf area (SLA), wood density and seed mass, are often good predictors of individual tree growth rates within communities. Individuals and species with high SLA, low wood density and small seeds tend to have faster growth rates.[br/][br/][b]2.[/b] If community-level relationships between traits and growth have general predictive value, then similar relationships should also be observed in analyses that integrate across taxa, biogeographic regions and environments. Such global consistency would imply that traits could serve as valuable proxies for the complex suite of factors that determine growth rate, and, therefore, could underpin a new generation of robust dynamic vegetation models. Alternatively, growth rates may depend more strongly on the local environment or growth–trait relationships may vary along environmental gradients.[br/][br/][b]3.[/b] We tested these alternative hypotheses using data on 27 352 juvenile trees, representing 278 species from 27 sites on all forested continents, and extensive functional trait data, 38% of which were obtained at the same sites at which growth was assessed. Data on potential evapotranspiration (PET), which summarizes the joint ecological effects of temperature and precipitation, were obtained from a global data base.[br/][br/][b]4.[/b] We estimated size-standardized relative height growth rates (SGR) for all species, then related them to functional traits and PET using mixed-effect models for the fastest growing species and for all species together.[br/][br/][b]5.[/b] Both the mean and 95th percentile SGR were more strongly associated with functional traits than with PET. PET was unrelated to SGR at the global scale. SGR increased with increasing SLA and decreased with increasing wood density and seed mass, but these traits explained only 3.1% of the variation in SGR. SGR–trait relationships were consistently weak across families and biogeographic zones, and over a range of tree statures. Thus, the most widely studied functional traits in plant ecology were poor predictors of tree growth over large scales.[br/][br/][b]6.[/b] Synthesis. We conclude that these functional traits alone may be unsuitable for predicting growth of trees over broad scales. Determining the functional traits that predict vital rates under specific environmental conditions may generate more insight than a monolithic global relationship can offer.
ISSN: 0022-0477

hal-01204226
https://hal.archives-ouvertes.fr/hal-01204226
DOI : 10.1111/1365-2745.12401
PRODINRA : 307144

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Melting experiments were performed on a silica-rich peridotite composition at 10-17 GPa to determine majoritic garnet-melt partition coefficients (D) for major and trace elements. Our results show that D for many elements, including Na, Sc, Y and rare earth elements (REE), varies significantly with increasing pressure or proportion of majorite component. Lu and Sc become incompatible at 17 GPa, with D decreasing from 1.5 at 10 GPa to 0.9 at 17 GPa. As predicted from lattice strain, log D for isovalent cations entering the large site of majoritic garnet exhibits a near-parabolic dependence on ionic radius. Our data are used to refine a previously published predictive model for garnet-melt partitioning of trivalent cations, which suffered from a lack of calibration in the 10-20 GPa range. Our results suggest that Archean Al-depleted komatiites from Barberton (South Africa) may have been generated by partial melting of dry peridotite at depths between 200 and 400 km. We also speculate that transition zone diamonds from Kankan (Guinea), which contain inclusions of majoritic garnet, may have formed from the partial reduction of CO2-rich magmas that subsequently transported them to the surface. This hypothesis would provide an explanation for the REE patterns of majoritic garnet trapped within these diamonds, including Eu anomalies. Finally, we show that segregation of majoritic garnet-bearing cumulates during crystallisation of a deep Martian magma ocean could lead to a variety of Lu/Hf and Sm/Nd ratios depending on pressure, leading to a range of ε143Nd and ε176Hf isotope signatures for potential mantle sources of Martian rocks.
ISSN: 0024-4937

hal-00767567
https://hal.archives-ouvertes.fr/hal-00767567
DOI : 10.1016/j.lithos.2012.06.013

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Transmission electron microscopy observations on olivine crystals deformed at moderate (≤1273 K) temperature evidenced dislocations interactions explaining the hardening observed in the experiments, but also recovery mechanisms by the absorption or emission of point defects. Thus we investigate the possibility that, at geological strain-rates, these recovery processes allow steady-state deformation by dislocation creep at low to moderate temperatures in the lithospheric mantle. We test this hypothesis using a 2.5-D dislocation dynamics (DD) model, which combines dislocation glide and recovery by climb. This model shows that diffusion-controlled recovery processes allow for steady-state deformation by dislocation creep in the lithospheric mantle at stresses <500 MPa. For stresses of 50–200 MPa, steady-state strain-rates of 10−15 s−110−15 s−1 may be attained at temperatures as low as 900 K. Fitting of the DD model produces a flow law, which represents a lower bound for the lithospheric mantle strength, since the models describe the deformation of an olivine single crystal in an easy slip orientation. Comparison of strain-rates and Moho temperatures inferred for different geodynamic environments and the predictions of this model-based flow law implies, nevertheless, that, except in incipient rifts, most of the observed deformation may be produced by stress levels ≤200 MPa, consistent with those inferred to be produced by convection. This convergence suggests that the present models, which explicitly calculate the time-dependent dislocation dynamics, may provide a correct first order estimate of the mechanical behaviour of the lithospheric mantle, which cannot be derived directly from any existing data.
ISSN: 0012-821X

hal-01277178
https://hal.archives-ouvertes.fr/hal-01277178
https://hal.archives-ouvertes.fr/hal-01277178/document
https://hal.archives-ouvertes.fr/hal-01277178/file/Boioli.pdf
DOI : 10.1016/j.epsl.2015.10.012

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
The easy-to-use in vivo model, zebrafish larva, is being increasingly used to screen chemical-induced hepatotoxicity, with a good predictivity for various mechanisms of liver injury. However, nothing is known about its applicability in exploring the mechanism called membrane remodeling, depicted as changes in membrane fluidity or lipid raft properties. The aim of this study was, therefore, to substantiate the zebrafish larva as a suitable in vivo model in this context. Ethanol was chosen as a prototype toxicant because it is largely described, both in hepatocyte cultures and in rodents, as capable of inducing a membrane remodeling leading to hepatocyte death and liver injury. The zebrafish larva model was demonstrated to be fully relevant as membrane remodeling was maintained even after a 1-week exposure without any adaptation as usually reported in rodents and hepatocyte cultures. It was also proven to exhibit a high sensitivity as it discriminated various levels of cytotoxicity depending on the extent of changes in membrane remodeling. In this context, its sensitivity appeared higher than that of WIF-B9 hepatic cells, which is suited for analyzing this kind of hepatotoxicity. Finally, the protection afforded by a membrane stabilizer, ursodeoxycholic acid (UDCA), or by a lipid raft disrupter, pravastatin, definitely validated zebrafish larva as a reliable model to quickly assess membrane remodeling involvement in chemical-induced hepatotoxicity. In conclusion, this model, compatible with a high throughput screening, might be adapted to seek hepatotoxicants via membrane remodeling, and also drugs targeting membrane features to propose new preventive or therapeutic strategies in chemical-induced liver diseases.
ISSN: 0260-437X

hal-01526425
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01526425
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01526425/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01526425/file/Zebrafish%20larva%20as%20a%20reliable%20model-Podechard%20JAT%202016%20revised.pdf
DOI : 10.1002/jat.3421

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Rheological properties of mantle minerals and rocks at temperatures (T) appropriate to much of Earth's lithosphere have remained poorly constrained, even though past experimental studies on olivine single crystals and polycrystalline aggregates have quantified the high-temperature creep mechanisms (T > 1200 degrees C). Consequently, we have performed deformation experiments on crystals of San Carlos olivine at lower temperatures, from 900 degrees to 1200 degrees C, in triaxial compression along the [101](c) direction. The experiments were carried out at a confining pressure of 300 MPa in a high-resolution gas-medium mechanical testing apparatus at differential stresses of 100 to 500 MPa. Several samples were deformed at constant displacement rate and others at constant load, in order to provide insight into possible effects of work-hardening. Under the deformation conditions investigated, little evidence of work-hardening was observed. The data follow a power-law dependence on stress, as in previous high-temperature deformation studies. The samples were, however, considerably weaker than predicted by the experimentally determined high-temperature constitutive equation for olivine crystals of this orientation from the study of Bai et al. (1991). The mechanical behavior correlates instead with the weaker of the two mechanisms (flow laws) that contribute to the high-temperature constitutive equation. Thus, our experiments demonstrate that published high-temperature constitutive equations overestimate the strength of lithospheric mantle and that the transition to low-temperature creep occurs at lower temperatures than previously inferred. Citation: Demouchy, S., S. E. Schneider, S. J. Mackwell, M. E. Zimmerman, and D. L. Kohlstedt (2009), Experimental deformation of olivine single crystals at lithospheric temperatures, Geophys. Res. Lett., 36, L04304, doi: 10.1029/2008GL036611.
ISSN: 0094-8276

hal-00420070
https://hal.archives-ouvertes.fr/hal-00420070
DOI : 10.1029/2008GL036611

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Displacement-length data from dilatant fractures (joints, veins, igneous dikes) and several varieties of deformation bands were analyzed statistically to investigate the applicability of mechanical models proposed for their formation. All 17 datasets are generally consistent with equilibrium or long-term power-law slopes on the displacement-length diagram of either 1.0 or 0.5. Similar to many faults, disaggregation deformation bands are consistent with a power-law scaling relation having a slope of approximately c = 1, implying a linear dependence of maximum displacement and discontinuity length (Dmax = γL). In contrast, dilatant fractures, cataclastic deformation bands, and shear-enhanced compaction bands are consistent with a power-law scaling relation with a slope of approximately c = 0.5, implying a dependence of maximum displacement on the square root of length (Dmax = αL1/2). The scaling relations represent an average, or long-term equilibrium outcome of deformation for conditions such as length-scale, time-scale, temperature, chemistry, and an effectively homogeneous far-field stress field, allowing for variations such as rapid and/or localized behaviors. The displacement-length scaling of these geologic structures follows systematic relationships that provide information on host-rock properties and the physics of fracture and deformation-band propagation.
ISSN: 0191-8141

hal-00818130
https://hal.archives-ouvertes.fr/hal-00818130
DOI : 10.1016/j.jsg.2012.12.005

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Ecological signs of Earth's biosphere forewarn an alarming trajectory towards a global mass-extinction. Assessing species performance and susceptibilities to decline is essential to comprehend and reverse this trend. Yet it is challenging, given difficulties associated with quantifying individual and population processes that are variable across time, space, and life-stages. We describe a new approach to estimating and comparing species performances that combines empirical data, a novel theoretical consideration of population dynamics, and modern statistics. Our approach allows for a more realistic continuous representation of individual performances along development stages while taking into account non-linearity, and natural variability as captured by spatio-temporally replicated observations. We illustrate its application in a coral meta-assemblage composed of populations of the three major reef-building taxa Acropora, Pocillopora, Porites. Using a unique set of highly replicated observations of individual coral dynamics under various environmental conditions, we show how taxa differ in their investment in recruitment and size-specific aptitude for growth and survival, notably through different use of clonal shrinkage, fragmentation, fission, and fusion processes. Our results reveal contrasting life-history trade-offs among taxa which, along with differing patterns of density-dependent recruitment, modulate species responses to decline. These differences in coral life history traits reflect opposing life-strategies, imply regulation at differing life-stages, and explain divergence in species trajectories. Our findings indicate a high potential for resilience in Pocillopora and Porites populations, thanks respectively to a sustained recruitment that promotes demographic elasticity through replacement of individuals, and a steady resistance to mortality which confers persistence through lingering of individuals. Resilience in Acropora appears more arbitrary, given high susceptibility to perturbations and dependency of recruitment on presence of established local populations. We identify management actions that can complement Acropora's life history and benefit recovery of its populations following mortality events. Our regression-modelling approach to quantifying and comparing species performances in different population processes is applicable to all taxa, as illustrated even those with complex clonal life histories, and can be implemented at wide spatio-temporal and taxonomic coverage. It can promote more accurate representation of species dynamics in both descriptive and predictive modelling approaches. The semi-parametric contrast curve method we develop facilitates comparing response variables along continuous explicative metrics while accounting for multiple sources of complexity in empirical data. It should widely benefit investigations in ecology and quantitative science.
ISSN: 1476-945X

hal-01212337
https://hal-univ-perp.archives-ouvertes.fr/hal-01212337
DOI : 10.1016/j.ecocom.2015.07.003

Éditeur(s) : HAL CCSD Elsevier Masson
Résumé : International audience
Adult lymphatic filariae (Wuchereria bancrofti, Brugia malayi) can cause blocking of lymphatics producing obliterating endolymphitis lesions. The subsequent extravasation of lymph (or chyle when the obstruction is canal) is at the origin of the formation of lymphedema or elephantiasis, in which the main histological finding is great hypertrophy of collagen elements. This theory involving filaria only is not the full picture, and bacterial infection, mainly by streptococci, is an important factor. The association of filaria with microbes is particularly dangerous because the presence of the latter, or its toxins, causes death of local microfilariae and even adult worms, which are known to be more harmful dead than alive. The progression of the disease, especially in cases with lymphedema, which mainly affects the limbs and the genital organs, depends on three factors: the species of filaria, the degree of transmission, and the receptivity of the patient to the parasite. Large differences are found according to the region involved, and in the same endemic zone, according to the individuals affected. However, they almost always occur progressively in areas where there have been recurrent attacks of acute lymphangitis.
ISSN: 0398-0499

hal-00715440
https://hal.univ-antilles.fr/hal-00715440
PUBMED : 7007545