Éditeur(s) : INRA : Institut National de la Recherche Agronomique Université des Antilles. Service commun de la documentation
Extrait de : 52e congrès annuel de la Société caribéenne des plantes alimentaires / 52nd annual meeting of the Caribbean food crops society (CFCS), du 10 au 16 juillet 2016. INRA, CFCS
Description : In the new context of the agro-ecological transition, present agricultural systems will have to produce more and better in a more constraint world. Mixed crop livestock systems (MCLS) represent sound alternative ways to progressively achieve these goals through crop-livestock integration (CLI). CLI exploits the synergies between cropping and livestock systems through organic fertilization with manure or plant association, use of crop residues to feed livestock, .... It offers many opportunities to improve productivity, as well as to increase resource use efficiency and improve the resilience of the whole farming system. In the scientific literature, authors advocate the interest of MLCS and CLI, based on theoretical considerations, modelling and empirical evidence from local case studies. But these studies do not clearly identify the respective roles of diversity of activities and CLI management practices in improving performances at the level of the whole farming system. Our aim was thus to assess CLI at farm scale in a range of MCLS and to explain farm performances by analyzing the combination of activities and the level of integration. We conducted our analyses in Guadeloupe, (French West Indies), where MCLS and CLI are complex but important challenges for local agricultural. In order to analyze CLI in a holistic and systemic way, we applied a method traditionally used in ecology, ecological network analysis, to study the structure, functioning and performance of agrosystems. This method was implemented on a range of Guadeloupian MCLS where CLI practices where identified. Nitrogen was retained to conduct the analysis due to its central role for both animal and vegetal productions. The ENA method allows an estimation of productivity, resilience, efficiency, productivity and self- sufficiency of the flows network. Our results show that 1/ efficiency and resilience appear correlated to the complexity and intensity of the network of flows; 2/ efficiency and resiliency are positively correlated when we consider them in terms of N flows; 3/ in the Guadeloupian context, CLI concerns mainly specific practices, as feeding pigs with a wide range of crop residues and organic fertilization of small market gardens and plots used to grow tubers. But at whole system level, CLI remains rare and mainly depends on conventional management practices as mineral fertilization and animal complementation of some farming activities as sugar cane, cattle breeding and banana. Moreover, the combination of productions implemented determines the potential of CLI and related performances linked to relative N efficiency of each production. Consequently, performance and especially efficiency and self-sufficiency depend more on the nature of the activity than on CLI management practices. There is still a gap between theoretical studies and CLI in practice, even though CLI is more complicated than simple flows and provides other services and functions. Dans le nouveau contexte de la transition agro-écologique, les systèmes agricoles actuels devront produire plus et les améliorer dans plus de monde de contrainte. Les systèmes mélangés de bétail de culture (MCLS) représentent des manières alternatives saines d'atteindre progressivement ces buts par l'intégration de culture-bétail (CLI). Le CLI exploite les synergies entre l'emblavage et les systèmes de bétail par la fertilisation organique avec l'association d'engrais ou d'usine, utilisation des résidus de culture d'alimenter le bétail,?. Il donne beaucoup d'occasions d'améliorer la productivité, aussi bien que d'augmenter l'efficacité d'utilisation de ressource et d'améliorer la résilience du système d'exploitation agricole entier. Dans la littérature scientifique, les auteurs préconisent l'intérêt de MLCS et de CLI, basé sur des considérations théoriques, modeler et des preuves empiriques des études de cas locales. Mais ces études n'identifient pas clairement les rôles respectifs de la diversité des activités et des pratiques de gestion de CLI en améliorant des interprétations au niveau du système d'exploitation agricole entier. Notre but était ainsi d'évaluer le CLI à l'échelle de ferme dans une gamme de MCLS et d'expliquer des interprétations de ferme en analysant la combinaison des activités et du niveau de l'intégration. Nous avons réalisé nos analyses en Guadeloupe, (des Antilles françaises), où MCLS et le CLI sont des défis complexes mais importants pour agricole local. Afin d'analyser le CLI d'une manière holistique et systémique, nous avons appliqué une méthode traditionnellement employée en écologie, analyse réseau écologique, pour étudier la structure, le fonctionnement et l'interprétation des agrosystems. Cette méthode a été appliquée sur une chaîne de Guadeloupian MCLS où des pratiques en matière de CLI où identifiée. L'azote a été maintenu pour réaliser l'analyse due à son rôle central pour les productions animales et végétales. La méthode d'ENA permet une évaluation de la productivité, de la résilience, de l'efficacité, de la productivité et de l'autosuffisance du réseau d'écoulements. Nos résultats prouvent que 1 efficacités et résiliences semblent corrélées avec la complexité et l'intensité du réseau des écoulements ; 2 efficacité et élasticité sont franchement corrélés quand nous les considérons en termes d'écoulements de N ; 3 dans le contexte de Guadeloupian, CLI concerne principalement des pratiques spécifiques, en tant que les porcs de alimentation par un large éventail de résidus de culture et de fertilisation organique de petits jardins du marché et complots employés pour cultiver des tubercules. Mais à au niveau système entier, le CLI demeure rare et dépend principalement des pratiques de gestion conventionnelles en tant que complémentation minérale de fertilisation et d'animal de quelques activités agricoles comme canne à sucre, élevage et banane. D'ailleurs, la combinaison des productions mises en application détermine le potentiel du CLI et des interprétations relatives liés à l'efficacité relative de N de chaque production. En conséquence, l'interprétation et particulièrement l'efficacité et l'autosuffisance dépendent davantage de la nature de l'activité que sur des pratiques de gestion de CLI. Il y a toujours un espace entre les études et le CLI théoriques dans la pratique, quoique le CLI soit plus compliqué que des écoulements simples et fournisse d'autres services et fonctions.
Siècle(s) traité(s) : 21
Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V16247
V16247

Éditeur(s) : Université des Antilles AREBio Groupe de recherche BIOSPHERES : BIOlogie, Sciences Physiques & Humaines pour les énergies Renouvelables, l
Extrait de : 1er colloque international BIOSPHERES, du 18 au 20 juin 2019. Université des Antilles
Description : Antarctica is a continent of enigmas. Stunning geographic beauty belies its inhospitable climate. Covered a mile thick in ice, it is the world's largest desert. Fossil ferns found in its mountains speak of its prehistory as a tropical rainforest, but now is largely devoid of life. Its most famous inhabitant, the penguin, is thought of as a flightless bird, but soars underwater much as a falcon glides the sky. Perhaps one of the greatest enigmas is the contrast between the terrestrial and marine environments. On land, monochromatic snow and ice support little life, yet the sea teams with life, life that expresses itself with the full rainbow of colors. Color is but one manifestation of chemical ecology. The Antarctic benthos supports an extensive community of predators and prey, competitors and facilitators. A harsh geographic history has contributed to marine diversification and enhanced what we now recognize as a rich flora and fauna, commensurate in some instances with temperate kelp forests and even approaching the richness of tropical marine environments. Not surprisingly, Antarctic benthic ecology is highly dependent on chemical mediation of interspecific interactions, interweaving chemodiversity with biodiversity in a classical yin and yang feedback loop. The evolution of selective chemical defenses facilitates drug discovery research, producing suites of metabolites that inform structure-activity studies and add breadth to bioactivity profiles. This presentation will focus on recent and contextual research from our lab which has demonstrated the potential for new biomedical lead molecules and scaffolds from these difficult to access biological resources.

Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V19067
V19067

Éditeur(s) : Université des Antilles AREBio Groupe de recherche BIOSPHERES : BIOlogie, Sciences Physiques & Humaines pour les énergies Renouvelables, l
Extrait de : 1er colloque international BIOSPHERES, du 18 au 20 juin 2019. Université des Antilles
Description : In the current ecological, economic and social context, the systematic use of drugs (prescription or self-medication) has direct health and environmental consequences. As a result, it is important to understand their perception by their main consumers. In this sense, social and environmental psychology aims to highlight the socio-psychological factors likely to influence the actors to adopt new practices or not (Zbinden et al., 2011). The present study, conducted in 2016 in CACEM territory, focuses on the analysis of social representations (SR) of drugs of the population from Martinique. The theory of SR allows the analysis of this mediation between man and his physical and social environment because these representations are highly contextualized and depend on the social anchoring of the groups (Doise, 1992).

Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V19084
V19084

Éditeur(s) : FSM, University of Florida FSM, University of Florida ( Gainesville, Gainesville )
Résumé : (Bibliography) Bibliography: p. 406-408.
Cover title.
"This study was submitted as partial fulfillment of the Ph.D. degree in the Department of Zoology, University of Florida."
Bulletin of the Florida State Museum, Biological sciences, vol. 24, no. 4
(Statement of Responsibility) Frank J. Bonaccorso.
Panama
Panama
Barro Colorado Island
Panama
Barro Colorado Island
Panama
Barro Colorado Island

Droits : Copyright held by the Florida Museum of Natural History, University of Florida. All rights reserved. Text, images and other media are for nonprofit, educational, and personal use of students, scholars, and the public. Any commercial use or republication by printed or electronic media is strictly prohibited without written permission of the museum. For permission or additional information, please contact the current editor of the Bulletin at bulletin@flmnh.ufl.edu.
06532998
80621195

Éditeur(s) : ISTPM
Résumé : I.S.T.P.M. lab of La Reunion (Indian Ocean) studies L. enigmaticus, its taxonomy, morphology, ecology, biology, feeding, reproduction and growth, and its fishing in the La Reunion and Mauritius Islands area.
Revue des Travaux de l'Institut des Pêches Maritimes (0035-2276) (ISTPM), 1975-12 , Vol. 39 , N. 4 , P. 415-442

Droits : Ifremer
http://archimer.ifremer.fr/doc/1975/publication-2030.pdf
http://archimer.ifremer.fr/doc/00000/2030/

Éditeur(s) : INRA : Institut National de la Recherche Agronomique Université des Antilles. Service commun de la documentation University of Suriname
Extrait de : 52e congrès annuel de la Société caribéenne des plantes alimentaires / 52nd annual meeting of the Caribbean food crops society (CFCS), du 10 au 16 juillet 2016. INRA, CFCS
Description : Many rural areas in Suriname are lacking information on technology from extension agents from the government extension agency, and research institutes. Communication and informal voices of farmers are shared by media. As part of a baseline study conducted for the sixth operational strategic plan of the Small Grants Programme in Suriname, four communities were selected: Moengo, Pokigron, Nickerie, Sipaliwini and Para. The purpose of this study was to collect data from communities regarding problems related to climate change, agricultural innovation and landscape management. This qualitative study was done through the focus group method. Eight focus group meetings were organized and consisted of 8-15 participants each. The key questions were extracted from the SEPLS method (Socio-ecological Production Landscapes and Seascapes). The data was analyzed through the SWOT method. Based on the results, the communities have a good level of awareness about management of their landscapes. Improvement of agriculture management will be possible by access to innovative and new knowledge developed in and outside the community. Climate change is an important issue that the community already is aware of, they developed their own local strategy in resilience to this issue. Beaucoup de zones rurales au Surinam manquent d'information sur la technologie des agents de vulgarisation de l'agence d'extension de gouvernement, et des instituts de recherche. La communication et les voix informelles des agriculteurs sont partagées par media. En tant qu'élément d'une étude de ligne de base entreprise pour le sixième plan stratégique opérationnel du petit programme de concessions au Surinam, les quatre communautés ont été sélectionnées : Moengo, Pokigron, Nickerie, Sipaliwini et paragraphe. Le but de cette étude était de rassembler des données de communautés concernant des problèmes liés au changement climatique, à l'innovation agricole et à la gestion de paysage. Cette étude qualitative a été faite par la méthode de groupe cible. Huit réunions de groupe cible ont été organisées et se sont composées de 8-15 participants chacun. Les questions clé ont été extraites à partir de la méthode de SEPLS (des paysages et des paysages marins Socio-écologiques de production). Les données ont été analysées par la méthode de BÛCHEUR. Basé sur les résultats, les communautés ont un bon niveau de conscience au sujet de la gestion de leurs paysages. L'amélioration de la gestion d'agriculture sera possible par l'accès aux connaissances innovatrices et nouvelles développées à l'intérieur et à l'extérieur de la communauté. Le changement climatique est une question importante que la communauté a pris en compte et développé sa propre stratégie locale dans la résilience.
Siècle(s) traité(s) : 21
Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V16256
V16256

Éditeur(s) : University of the Virgin Islands Cooperative Extension Service University of the Virgin Islands Cooperative Extension Service ( Kingshill Saint Croix, Virgin Islands of the United States )
Résumé : (Statement of Responsibility) by Olasee Davis and Rudy G. O'Reilly, Jr.
"February 1996."
Virgin Islands of the United States -- Virgin Islands of the United States
Virgin Islands of the United States
Saint Croix
Virgin Islands of the United States
Saint Croix
Saint Croix (V.I.)

49936691
http://ufdc.ufl.edu/UF00096200/00001

Éditeur(s) : Kluwer
Résumé : We reviewed the literature concerning fish aggregation devices (FADs) to determine areas of relative research deficiency. Using specific searches of the Aquatic Sciences and Fisheries Abstracts ( ASFA) database from 1978 to December 2003 and a classical search of the pre-1978 literature, we collected 407 references on FADs. Publications before 1980 were predominantly peer-reviewed, although non-peer reviewed literature has dominated since 1980, due to the numerous technical reports produced as FADs became more widely used in artisinal and large-scale industrial. sheries in the 1980s. Most studies of the ecology of FAD-associated fish were descriptive, with few mensurative experimental studies and even fewer manipulative experimental studies that tested specific hypotheses, due to inherent difficulties in working in the open ocean on objects that are temporary in space and time. Research on the ecology of FAD-associated fish has focused on moored FADs, despite the major FAD-based. sheries being around drifting FADs. Publications presenting information on moored FADs outnumbered papers on drifting FADs by a ratio of 3.5: 1. We recommend that greater emphasis be placed by. sheries scientists and funding agencies on researching drifting FADs to provide better information for management of large-scale FAD-based industrial. sheries. Future research should focus on determining the patterns of use of drifting FADs by pelagic species, the underlying sensory processes of attraction and the ecological consequences for individual fish stocks and the wider pelagic ecosystem of the use of FADs as. sheries enhancement tools.
Reviews in Fish Biology and Fisheries (0960-3166) (Kluwer), 2004-03 , Vol. 14 , N. 1 , P. 21-42

Droits : 2004 Springer
http://archimer.ifremer.fr/doc/2004/publication-721.pdf
DOI:10.1007/s11160-004-3151-x
http://archimer.ifremer.fr/doc/00000/721/

Éditeur(s) : HAL CCSD
Résumé : International audience
STUDY QUESTION: Do freezing and in vitro culture procedures enhance the expression of proteins involved in apoptotic or autophagic pathways in murine pre-pubertal testicular tissue? SUMMARY ANSWER: IVM strongly modified apoptosis- and autophagy-related relative protein levels in mice testicular tissue whereas the impact of cryopreservation procedures was minimal at the end of the culture. WHAT IS KNOWN ALREADY: In vitro spermatogenesis remains a challenging technical issue as it imposes to find a very close balance between survival and death of germ cell natural precursors (i.e. gonocytes and spermatogonia), which will eventually undergo a complete spermatogenesis close to in vivo conditions. The establishment of efficient culture conditions coupled with suitable cryopreservation procedures (e.g. controlled slow freezing [CSF] and solid surface vitrification [SSV]) of pre-pubertal testicular tissue is a crucial step in the fields of fertility preservation and restoration to improve the spermatic yield obtained in vitro. STUDY DESIGN, SIZE, DURATION: Here, we study cryopreservation procedures (i.e. CSF or SSV) and the impact of culture media compositions. A first set of 66 mouse pre-pubertal testes were directly cultured during 30, 36, 38 and 60 days (D) from 2.5 to 6.5-day-old CD-1 mice to evaluate the impact of time-aspect of culture and to endorse the reverse phase protein microarrays (RPPM) technique as an adapted experimental tool for the field of in vitro spermatogenesis. Ninety others fresh, slow-frozen and vitrified pre-pubertal testes were cultured during 30 days for the principal study to evaluate the impact of cryopreservation procedures before and after culture. Thirty-four testes dissected from 2.5, 6.5, 36.5, 40.5, 42.5 and 62.5 days postpartum (dpp) mice, corresponding to the time frames of spermatogenesis orchestrated in vitro, were used as in vivo controls. PARTICIPANTS/MATERIALS, SETTING, METHODS: After in vitro culture, testicular tissue samples originated from 2.5 or 6.5-day-old CD-1 male mice were analyzed using RPPM. This targeted proteomic technique allowed us to assess the expression level of 29 apoptosis- and autophagy-related factors by normalizing blank-corrected signal values. In addition, morphological analyses (e.g. HES, PAS, TRA98 and CREM) and DNA fragmentation in intra-tubular cells (i.e. terminal deoxynucleotidyl transferase dUTP nick end labeling; TUNEL) were assessed for the distinct experimental conditions tested as well as for in vivo control mouse testes. MAIN RESULTS AND THE ROLE OF CHANCE: A validation of the RPPM procedure in the field of in vitro spermatogenesis was completed with assay and array robustness before a principal study concerning the evaluation of the impact of in vitro culture and cryopreservation procedures. The proportion of elongated spermatids and the total cell number per seminiferous tubule tended to be very different between the in vivo and in vitro conditions (P < 0.05), suggesting the presence of a beneficial regulation on the first spermatogenesis wave by intrinsic apoptosis (Caspase₉) and autophagy (Atg5) factors (P < 0.0003 and r2 = 0.74). Concerning the impact of culture media compositions, a basic medium (BM) composed of αMEM plus 10% KnockOut™ serum replacement and gentamicin supplemented with retinol (Rol) and vitamin E (Vit. E) was selected as the best culture medium for fresh 6.5 dpp tissue cultured during 30D with 27.7 ± 8.10% of seminiferous tubules containing elongated spermatids. Concerning the impact of cryopreservation procedures, SSV did not have any impact on the morphological parameters evaluated after culture in comparison to fresh tissue (FT) controls. The proportion of tubules with elongated spermatids on testicular explants cultured with BMRol+Vit. E was not different between SSV (6.6 ± 1.6%) and CSF (5.3 ± 1.9%); however, round spermatids were observed more frequently for SSV (19 ± 6.2%) than CSF (3.3 ± 1.9%, P = 0.0317). Even if the proportion of TUNEL-positive cells for BMRol+Vit. E was higher at D30 after SSV (4.12 ± 0.26%) than CSF (1.86 ± 0.12%, P = 0.0022) and FT (2.69 ± 0.33%, P = 0.0108), the DNA damages observed at the end of the culture (i.e. D30) were similar to respective 6.5 dpp controls. In addition, the relative protein level expression ratio of an apoptotic factor, the phosphorylated FADD on Fas, was reduced by 64-fold in vitrified testes cultured with BMRol+Vit. E. Furthermore, we found in this study that the StemPro®-34 SFM culture medium supplemented with growth factors (e.g. EGF, bFGF, GDNF and LIF) prevented the differentiation of spermatogonial stem cells in favor of a significant proliferation with a better architectural pattern than in vivo 6.5 dpp controls with an increase of seminiferous tubules area for FT (P = 0.0357) and CSF (P = 0.0317). LIMITATIONS REASONS FOR CAUTION: Despite our promising results, the evaluation of apoptotic- and autophagic-related proteins was studied for a limited amount of proteins and on global testicular tissue. WIDER IMPLICATIONS OF THE FINDINGS: The data presented herein will help to improve apoptotic and autophagic understanding during the first spermatogenic wave. Moreover, our findings illustrate for the first time that, using finely-tuned experimental conditions, a testicular in vitro culture combined with proteomic technologies may significantly facilitate the study of cryopreservation procedures and in vitro culture evaluations. This study may also contribute to improve work on testicular tissues from pre-pubertal and adolescent cancer survivors. STUDY FUNDING/COMPETING INTEREST(S): This study was supported by a Ph.D. grant from the Rouen Normandie Université and a financial support from 'la Ligue nationale contre le cancer' (both awarded to L.D.), funding from Institute for Research and Innovation in Biomedicine (IRIB), Agence de la Biomédecine, and co-supported by European Union and Région Normandie. Europe gets involved in Normandie with European Regional Development Fund (ERDF). The authors declare that there is no conflict of interest.
Molecular Human Reproduction

hal-01647081
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01647081
DOI : 10.1093/molehr/gax054
PUBMED : 29040674

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: Sampling design is a key issue when establishing species inventories and characterizing habitats within highly heterogeneous landscapes. Sampling efforts in such environments may be constrained and many field studies only rely on subjective and/or qualitative approaches to design collection strategy. The region of Cacao, in French Guiana, provides an excellent study site to understand the presence and abundance of Anopheles mosquitoes, their species dynamics and the transmission risk of malaria across various environments. We propose an objective methodology to define a stratified sampling design. Following thorough environmental characterization, a factorial analysis of mixed groups allows the data to be reduced and non-collinear principal components to be identified while balancing the influences of the different environmental factors. Such components defined new variables which could then be used in a robust k-means clustering procedure. Then, we identified five clusters that corresponded to our sampling strata and selected sampling sites in each stratum. RESULTS: We validated our method by comparing the species overlap of entomological collections from selected sites and the environmental similarities of the same sites. The Morisita index was significantly correlated (Pearson linear correlation) with environmental similarity based on i) the balanced environmental variable groups considered jointly (p = 0.001) and ii) land cover/use (p-value<0.001). The Jaccard index was significantly correlated with land cover/use-based environmental similarity (p-value = 0.001). CONCLUSIONS: The results validate our sampling approach. Land cover/use maps (based on high spatial resolution satellite images) were shown to be particularly useful when studying the presence, density and diversity of Anopheles mosquitoes at local scales and in very heterogeneous landscapes.
BMC Ecology

pasteur-00914104
https://hal-riip.archives-ouvertes.fr/pasteur-00914104
https://hal-riip.archives-ouvertes.fr/pasteur-00914104/document
DOI : 10.1186/1472-6785-13-45
PUBMED : 24289184

Éditeur(s) : Copernicus Gesellschaft Mbh
Résumé : Deep-sea bivalves found at hydrothermal vents, cold seeps and organic falls are sustained by chemosynthetic bacteria which ensure part or all of their carbon nutrition. These symbioses are of prime importance for the functioning of the ecosystems. Similar symbioses occur in other bivalve species living in shallow and coastal reduced habitats worldwide. In recent years, several deep-sea species have been investigated from continental margins around Europe, West Africa, East America, the Gulf of Mexico, and from hydrothermal vents on the Mid-Atlantic Ridge. In parallel, numerous more easily accessible shallow marine species were studied. We here provide a summary of the current knowledge available on chemosymbiotic bivalves in the area ranging west-to-east from the Gulf of Mexico to Marmara Sea, and north-to-south from the Arctic to the Gulf of Guinea. Characteristics of symbioses in 51 species from the area are summarized for each of the five bivalve families documented to harbor chemosynthetic symbionts (Mytilidae, Vesicomyidae, Solemyidae, Thyasiridae and Lucinidae), and compared among families with special emphasis on ecology, life cycle, and connectivity. Chemosynthetic symbioses are a major adaptation to ecosystems and habitats exposed to reducing conditions, yet relatively little is known regarding their diversity and functioning apart from a few "model species" on which effort has focused over the last 30 yr. In the context of increasing concern about biodiversity and ecosystems, and increasing anthropogenic pressure on Oceans, we advocate for a better assessment of bivalve symbioses diversity in order to evaluate the capacities of these remarkable ecological and evolutionary units to withstand environmental change
Biogeosciences (1726-4170) (Copernicus Gesellschaft Mbh), 2013 , Vol. 10 , N. 5 , P. 3241-3267

Droits : Author(s) 2012. CC Attribution 3.0 License.
http://archimer.ifremer.fr/doc/00133/24417/22431.pdf
DOI:10.5194/bg-10-3241-2013
http://archimer.ifremer.fr/doc/00133/24417/

Éditeur(s) : EDP Sciences
Résumé : The present paper aims at identifying and assessing indicators of the effects of Marine Protected Areas (MPAs) in coral reef regions, based on a bibliography review in ecology, economics and social sciences. First the various effects Studied within each of these domains and the variables used to measure them were censused. Potential ecological indicators were assessed through their link with the question used (here termed "relevance") and their "effectiveness" which encompasses the issues of precision, accuracy and statistical power. Relevance and effectiveness were respectively measured by the frequency of use of each indicator and the proportion of significant results in the reviewed articles. For social and economic effects, the approach was not possible due to the low number of references: we thus discussed the issue of finding appropriate indicators for those fields. Results indicate: 1- the unbalance in literature between disciplines: 2- the need for protocols and methodologies which include controls in order to assess MPA effects: 3- an important proportion of ecological indicators with low effectiveness: 4- the large number of ecological effects still not studied or not demonstrated at present.
Cet article vise à identifier des indicateurs de l'effet des aires marines protégées (AMP) en milieu corallien, sur la base d'une synthèse bibliographique dans les domaines écologiques, économiques et sociaux, et principalement en milieu corallien. Nous recensons d'abord les différents effets attendus des AMP pour chacun des domaines, et les variables retenues pour les étudier. Les indicateurs écologiques potentiels sont évalués au travers de leur lien avec l'effet étudié (ici appelé "pertinence") et de leur "efficacité" qui regroupe les notions de précision, justesse et puissance statistique. Pertinence et efficacité sont respectivement mesurées par la fréquence d'utilisation et la proportion de résultats significatifs trouvés dans les articles recensés. Pour les aspects économiques et sociaux, le faible nombre de références ne permet pas une approche comparable à celle utilisée pour les indicateurs écologiques, et nous discutons donc de la question de l'identification d'indicateurs, et suggérons quelques pistes de recherche. Les principales conclusions de ce travail sont: i) le décalage entre les nombres de publications entre disciplines; ii) la nécessité de protocoles et méthodologies incluant des situations de contrôle pour évaluer les effets des MPA; iii) la faible efficacité de nombreux indicateurs écologiques; et iv) le nombre élevé d'effets peu ou pas étudiés ou démontrés à l'heure actuelle.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2005 , Vol. 18 , N. 1 , P. 15-33

Droits : EDP Sciences, IFREMER, IRD 2005
http://archimer.ifremer.fr/doc/2005/publication-409.pdf
DOI:10.1051/alr:2005011
http://archimer.ifremer.fr/doc/00000/409/

Éditeur(s) : Inter-research
Résumé : Chemical tracers (e. g. stable isotopes or trace metals) are increasingly used to study trophic ecology and feeding habits of marine organisms and various factors can affect their values. The aim of the present study was to provide information on ontogenic effects on stable carbon and nitrogen values (delta C-13 and delta N-15) and on cadmium (Cd) and mercury (Hg) concentrations in 5 cephalopod species from the Bay of Biscay (North-East Atlantic Ocean). To this end, individuals belonging to 3 species showing the widest range of sizes were analysed for muscle delta C-13 and delta N-15 values and muscle Hg, and digestive gland Cd concentrations. Results showed that stable isotope ratios allowed discrimination of specific feeding strategies during ontogenesis. Segregation between 5 cephalopod species in terms of trophic ecology was also evidenced (different isotopic niches). In contrast, Hg concentrations varied over the same order of magnitude in these 5 cephalopod species, despite higher levels in the benthic octopus Eledone cirrhosa. Consistently, Hg concentrations followed the same ontogenic pattern and increased with increasing body size/age of cephalopods. Finally, Cd concentrations varied over 3 orders of magnitude among the 5 species. Despite possible effects of physiology in terms of metal bioaccumulation, Cd concentrations were likely to reflect specific feeding preferences or feeding zones and ontogenic variability within a single species. Thus, ontogenic effects have to be taken into account when stable isotope ratios of carbon and nitrogen or trace metals are used as ecological tracers; the best recommendation being to focus on a given class age.
Marine Ecology Progress Series (0171-8630) (Inter-research), 2011 , Vol. 433 , P. 107-120

Droits : Inter-Research 2011 · www.int-res.com
http://archimer.ifremer.fr/doc/00166/27761/25938.pdf
DOI:10.3354/meps09159
http://archimer.ifremer.fr/doc/00166/27761/

Éditeur(s) : HAL CCSD Springer International Publishing
Résumé : The intensive farming practices that have been developed over the past 60 years are based mainly on the use of chemical inputs such as fertilisers and pesticides, mechanical tillage and monoculture. The limitations of these methods are now clear: long-term degradation of soil fertility, impacts on the environment and human health, high consumption of fossil fuels, low efficiency of inputs and threats to food security in a context of climate change. Would farming practices that rely on the activation of ecological processes be an alternative to achieve a balance between high productivity and environmental preservation? While many studies suggest a positive relationship between soil biodiversity and ecosystem services, there is considerable debate on the form such agricultural systems should take. This study reviewed the state of current knowledge and identified aspects requiring further research to achieve the aim of sustainable intensification of agriculture. The following major points emerged: 1) Most studies focused on the evaluation of individual practices. However, changes in farmers’ cropping practices to take advantage of soil biodiversity services would need to manage not only the interactions between various practices but also the trade-off between the technical and socio economic constraints of cropping systems. Advances in agricultural system design approaches may help to ensure appropriate trade-offs. 2) More attention should be given to drawing on knowledge from different sources: laboratory studies focusing on the ecological functions of soil biodiversity, experimental surveys on farmers’ fields to rank the farming practices and processes to be included in site-specific models, and on- station experiments to test hypotheses and acquire additional reference material. 3) Whereas advances in technical and scientific knowledge provide an increasing number of relevant indicators for characterizing biodiversity and ecological functions, studies are rarely targeted at the development of indicators that are accessible to farmers or their technical advisors. The lack of indicators accessible to grassroots players for evaluating the impacts of their decisions on soil biodiversity remains a serious obstacle to the development of innovative agro-ecological systems.
Sustainable Agriculture Reviews 14

ISBN : 978-3-319-06015-6
hal-01268743
https://hal.archives-ouvertes.fr/hal-01268743
DOI : 10.1007/978-3-319-06016-3_5
PRODINRA : 270786

Résumé : After a period of rapid development of the sites (an increase in both reared surface area and production), tropical shrimp aquaculture is currently being faced with critical problems due to economical and ecological constraints. In many countries with favourable conditions for shrimp aquaculture such as indonesia or Vietnam, sites are often badly selected and/or over-exploited. This conducts to sorne extent to decreases or collapses in the production due to the difficulty in predicting the maximum production capacity of the sites. Furthermore, it appears that production sustainability depends on many factors among which socio-economy and ecolo gy are of prime importance. The STD3 project titled « Assessment of tropical shrimp aquaculture impact on the environment in tropical countries using hydrobiology, ecology and remote sensing as helping tools for diagnosis )) was initiated in 1994, with the aim to study the sustainability of marine shrimp aquaculture in tropical areas, main! y Indonesia and Vietnam, through the following tasks: (i) improve site selection and study the impact of aquaculture on marine environments presenting a variable sensitivity to organic sewage, (ii) analyse the socio-economical aspects and profitability of the aquaculture industry and of common resources (iii) use remote sensing and geographical data bases for diagnosis and monitoring of site degradation (iv) reinforce the capacity of Asian scientists through training. Severa! aquaculture sites have been investigated in the Lampung region (South Sumatra, Indonesia), the Mekong delta (Vietnam) and on the West coast of New-Caledonia, providing a large range of typical ecosystems encountered in Asia and in the Pacifie, from coralline sites to coastal plains with mangrove and deltaic areas. The study concerned the spatial structure and seasonal influence of these ecosystems, the temporal variation during the course of the project (3 years) and the relation between the ecological structure and farm productions. Remote sensing provides a synoptic vision over large land expanses. Severa! scenes were processed for landuse mapping using conventional classification techniques. Concerning water quality assessment, a general relation for the Java sea was found between image and field data in terms of total suspended matter. Applying this relation to a new site in Sumatra has provided an initial approach to water type and, together with land use mapping, a preliminary assessment of the suitability of the area to shrimp aquaculture development. Socio-economic research has been focused on the identification ofneeds for collective action, including public policy, in the perspective of shrimp farming sustainability. The main concern is in the regulation of shrimp farming intensification and extensification at the scale of coastal ecosystemic entities in a common property resource management perspective. The common considered here is coastal water quality. Comparing the local development profiles and the institutional grounds for the design and implementation of collective management rules shows that variables such as land tenure system, farm owner socio-economic profile, social homogeneity or heterogeneity of the farmers are key factors to analyse the potential for sustainability. The defmition of water quality and the possible means to ensure its collective management are discussed. The main conclusion is that the economie incentives to farming development are strong but there is no significant difference among traditional, semi-intensive and intensive systems in terms of economie efficiency or wealth distribution. The description of the functioning of the different kinds of ecosystems make it possible to give an advice concerning the positioning of the activity inside the ecosystem, and furthermore to have a reference state in order to determine the impact of the activity on the coastal environnement. This impact can be summarized as an increase in the concentration of total suspended matt€?r, of particulate organic matter and of sulfate reducing bacterias. This organic ma~.er is either issued from rearing activities or from telluric origine, due to mangrove eradication when building the ponds. An evaluation of the relationship existing between productivity and characteristics of each ecosystem bas been conducted by correlating ecological indicators data (concentration of total suspended matter, particulate organic matter, chlorophyll, percentage of pheopigments in total pigments and cyanobacteria and sulfatereducing bacteria in water and sediments) with the average production of the farms. This comparison lead to the compilation of a scale of observed production integrating the range of these environmental parameters with shrimp production levels, bound to facilitate the positioning of shrimp farming in relation with the confmement leve! of each ecosystem. Lastly, ali geographie data originated from the various compartments of the study have been geo-referenced and loaded into a geographical information system. This allows to display any query made on spatial variables and their related statistical data, including the ir variations over the last few years and to reveal patterns and phenomena otherwise not obvious.
Le programme mis en oeuvre par la DRV (Paris, CREMA-L'Houmeau, DELIAO Brest, COP Tahiti, GIE/RA Nouvelle Calédonie), dans le cadre d'un projet européen STD3 «(Sciences et Technique au Service du Développement», en collaboration avec l'Université de Montpellier II, l'Ecole Nationale d'Agronomie de Rennes, l'ITC (Hollande), l'Institut Océanographique de Nha Trang (Vietnam), le BADC de Jepara et le BPPT de Jakarta (Indonésie), avait pour but la mise au point de méthodes permettant d'améliorer la sélection des sites ainsi que le suivi du développement et de l'impact de l'aquaculture des crevettes Péneides en milieu tropical pour éviter la surexploitation. Quatre axes de recherche ont été défmis : a) identifier la nature et quantifier les rejets de déchets issus de ce type d'aquaculture, b) définir les caractéristiques écologiques des écosystèmes susceptibles d'accueillir l'activité aquacole et suivre leur évolution sous l'influence des rejets, c) déterminer l'influence de la gestion des fermes et des ressources (aspects économiques) sur les performances de productivité, d) déterminer la capacité de la télédétection comme outil de diagnostic d'impact à l'échelle de la région, e) mener un programme de formation d'étudiants et jeunes chercheurs Vietnamiens et Indonésiens.

Droits : 1998 Ifremer
http://archimer.ifremer.fr/doc/00132/24357/22357.pdf
http://archimer.ifremer.fr/doc/00132/24357/

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
AimBiological invasions are major contributors to global change and native biodiversity decline. However, they are overlooked in marine conservation plans. Here, we examine for the first time the extent to which marine conservation planning research has addressed (or ignored) biological invasions. Furthermore, we explore the change of spatial priorities in conservation plans when different approaches are used to incorporate the presence and impacts of invasive species.LocationGlobal analysis with a focus on the Mediterranean Sea region.MethodsWe conducted a systematic literature review consisting of three steps: (1) article selection using a search engine, (2) abstract screening and (3) review of pertinent articles, which were identified in the second step. The information extracted included the scale and geographical location of each case study as well as the approach followed regarding invasive species. We also applied the software Marxan to produce and compare conservation plans for the Mediterranean Sea that either protect, or avoid areas impacted by invasives, or ignore the issue. One case study focused on the protection of critical habitats, and the other on endemic fish species.ResultsWe found that of 119 papers on marine spatial plans in specific biogeographic regions, only three (2.5%) explicitly took into account invasive species. When comparing the different conservation plans for each case study, we found that the majority of selected sites for protection (ca. 80%) changed in the critical habitat case study, while this proportion was lower but substantial (27%) in the endemic fish species case study.Main conclusionsBiological invasions are being widely disregarded when planning for conservation in the marine environment across local to global scales. More explicit consideration of biological invasions can significantly alter spatial conservation priorities. Future conservation plans should explicitly account for biological invasions to optimize the selection of marine protected areas.
ISSN: 1366-9516

hal-01431351
https://hal-univ-perp.archives-ouvertes.fr/hal-01431351
DOI : 10.1111/ddi.12491

Éditeur(s) : HAL CCSD Wiley
Résumé : Unveiling the genetic basis of local adaptation to environmental variation is a major goal in molecular ecology. In rugged landscapes characterized by environmental mosaics, living populations and communities can experience steep ecological gradients over very short geographical distances. In lowland tropical forests, interspecific divergence in edaphic specialization (for seasonally flooded bottomlands and seasonally dry terra firme soils) has been proven by ecological studies on adaptive traits. Some species are nevertheless capable of covering the entire span of the gradient; intraspecific variation for adaptation to contrasting conditions may explain the distribution of such ecological generalists. We investigated whether local divergence happens at small spatial scales in two stands of Eperua falcata (Fabaceae), a widespread tree species of the Guiana Shield. We investigated Single Nucleotide Polymorphisms (SNP) and sequence divergence as well as spatial genetic structure (SGS) at four genes putatively involved in stress response and three genes with unknown function. Significant genetic differentiation was observed among sub-populations within stands, and eight SNP loci showed patterns compatible with disruptive selection. SGS analysis showed genetic turnover along the gradients at three loci, and at least one haplotype was found to be in repulsion with one habitat. Taken together, these results suggest genetic differentiation at small spatial scale in spite of gene flow. We hypothesize that heterogeneous environments may cause molecular divergence, possibly associated to local adaptation in E. falcata.
ISSN: 1010-061X

hal-01032412
https://hal.archives-ouvertes.fr/hal-01032412
DOI : 10.1111/jeb.12069

Éditeur(s) : Pêche thonière et dispositifs de concentration de poissons, Caribbean-Martinique, 15-19 Oct 1999
Résumé : This paper discusses the hypothesis that small tunas and the various species found in association with drifting fads (such as "mahi-mahi", rainbow runner, wahoo, etc.) may be biologically trapped by such a strong association. Massive seeding of drifting artificial fads was observed worldwide during recent years. In this hypothesis, we suggest that fads may alter some biological characteristics of epipelagic populations associated with them: migration, growth, condition factors, predation and natural mortality. As fads are most often used in the equatorial currents, they tend to exhibit zonal drift. Therefore, the associated populations would be artificially transferred from one part of the ocean to another, when they would show different movement patterns in the absence of fads. Natural logs were probably beneficial in terms of ecology and evolution, because they tend to accumulate in convergence areas, most often considered as rich forage areas. Now, fads are seeded in offshore areas, which are not necessarily favourable for tuna feeding. This apparently strong association between fishes and drifting fads may then produce an unexpected biological impact on tuna populations and their associated fauna. The plan is to test this hypothesis in the Atlantic, developing an ad hoc research programme based on tagging, biological and physiological studies, in association to an analysis of high resolution fishery data before and after the development of the fad fishery.Original Abstract: Cet article discute l'hypothese selon laquelle les petits thons et les differentes especes associees a des DCP derivants (comme les coryphenes, elagatis, thazards, etc.) pourraient etre pris dans un piege biologique resultant de cette forte association. Le deploiement massif de DCP artificiels derivants a ete constate a l'echelle mondiale au cours des dernieres annees. Dans cette hypothese, ces DCP, colonises en permanence par de grandes fractions de populations epipelagiques, pourraient modifier les caracteristiques biologiques des especes concernees: leur migration, leur croissance, leurs facteurs de condition, la predation et la mortalite naturelle. Les DCP etant plus frequemment utilises dans les courants equatoriaux, ils tendent a deriver zonalement. Ainsi, les populations associees seraient artificiellement transferees d'un bord a l'autre de l'ocean, alors qu'elles manifesteraient d'autres types de deplacements en l'absence de DCP. Les debris naturels etaient probablement benefiques sur le plan de l'ecologie et de l'evolution car ils s'accumulent dans des zones de convergence le plus souvent considerees comme des zones riches en nourriture. Maintenant, les DCP sont mouilles au large, dans des zones qui peuvent ou non etre favorables a l'alimentation des thons. Cette association apparemment forte entre poissons et DCP derivants pourrait alors causer un impact biologique inattendu sur les populations pelagiques (thons et faune accompagnante). L'objectif est de tester cette hypothese dans l'Atlantique au moyen d'un programme de recherche s'appuyant sur du marquage et des etudes biologiques et physiologiques, parallelement a une analyse des donnees de peche (tailles et CPUE, avant et apres le deploiement des DCP derivants).

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00042/15303/12636.pdf
http://archimer.ifremer.fr/doc/00042/15303/

Éditeur(s) : Gauthier-Villars
Résumé : The variability of ''yellow substance'' in waters of the Skagerrak and the Kattegat was studied during the international Skagex programme in 1990 and 1991. Data on attenuation of light and fluorescence of dissolved organic matter (DOM) in sea water were collected with a spectral transmissiometer and a submersible fluorometer within a depth range of 0-250 m at several stations. More than fifty-fold variations of fluorescence intensity over space and time were due to the combined action of different sources of DOM in the straits. The surface maximum of fluorescing DOM, related to river outflow, was spreading from Oslo fjord to the central Skagerrak in late spring. This maximum may be ecologically important because it diminishes shortwave PAR. In the autumn the brightest DOM fluorescence was found in the Kattegat and along the Norwegian coast in accordance with earlier studies. The local minima of DOM fluorescence are associated with the Jutland current. Both the instability of the current and a ten-fold difference in DOM content between deep layers of the Skagerrak and Kattegat resulted in strong synoptic variability of fluorescence in the transitional area between the straits. Seasonal and synoptic variabilities of ''yellow substance'' were minimal in the southern Kattegat. The vertical gradients of DOM fluorescence were mostly negative at the depth of the thermocline of the open Skagerrak in spring, reaching values of 40-50 % m-1. Fine structure and complex shape were inherent to fluorescence profiles from areas of intensive water mixing. DOM fluorescence closely covaried with attenuation of UV light: the correlation coefficient was + 0.9 for wavelength w <= 350 nm regardless of season. The inverse dependence between wavelength derivative and magnitude of UV attenuation in the straits did not change with season. DOM fluorescence and water salinity were negatively correlated at depths of 25-50 m but they varied independently in the upper 10 m. No significant correlation between fluorescence and nitrates has been found. Estimates of correlation with phosphates ranged from 0.7 to 0.8. In general, the changes of fluorescence were due to variations of DOM content in sea water but not to variability of DOM composition or state. The properties of DOM fluorescence in the Skagerrak-Kattegat area make it a useful natural tracer of water movements suitable for active remote sensing with airborne lidar.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1993 , Vol. 16 , N. 2 , P. 115-125

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00099/21041/18667.pdf
http://archimer.ifremer.fr/doc/00099/21041/

Résumé : The study conducted in the framework of an agreement between Ifremer and the Local fisheries committee at Audierne is part of a project to restore spiny lobster Palinurus elephas stock levels in the Iroise Sea. It is supported by professional fishermen from Finistère and by the Regional fisheries committee of Brittany. After a brief review of the way lobster stocks are managed worldwide, followed by the major biological and ecological features of red lobster and the state of fisheries in Europe and North Africa, the very poor state of the resource along French coast is borne out by the statistics of landings. Various scenarios (not alternatives) to promote the rebuilding of the biomass are suggested: minimum landing size increase, seasonal closure of the fishery, berried females protection, no fishing zones. The drift of phyllosoma larvae during their long larval stage is addressed using a 3-D hydrodynamic simulation model.
L'étude réalisée dans le cadre d'une convention entre Ifremer et le Comité local des Pêches d'Audierne s'inscrit dans un projet de reconquête des niveaux de ressource en langouste rouge Palinurus elephas en mer d'Iroise soutenu par les pêcheurs professionnels de la pointe du Finistère et par le Comité régional des Pêches de Bretagne. Après avoir rappelé brièvement les modalités de gestion des stocks de langoustes dans le monde puis les grands traits biologiques et écologiques de la langouste rouge et l'état des pêcheries en Europe et dans le nord de l'Afrique, le très mauvais état de cette ressource sur les côtes françaises est confirmé au travers des statistiques de débarquement. Divers scénarios (non alternatifs) visant à favoriser la reconstitution d'une biomasse sont proposés : augmentation de la taille minimale au débarquement, fermeture saisonnière de la pêche, protection des femelles ovigères et création de zones protégées. La dérive des larves phyllosomes au cours de leur longue phase larvaire est abordée par un modèle de simulation hydrodynamique en trois dimensions.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2005/rapport-1198.pdf
http://archimer.ifremer.fr/doc/00000/1198/