Éditeur(s) : Université des Antilles AREBio Groupe de recherche BIOSPHERES : BIOlogie, Sciences Physiques & Humaines pour les énergies Renouvelables, l
Extrait de : 1er colloque international BIOSPHERES, du 18 au 20 juin 2019. Université des Antilles
Description : Chlordecone is a persistent organochlorine pesticide widely used between 1972 and 1993 in the French West Indies to control the root borer in banana fields. Chlordecone use resulted in long-term pollution of soils, contamination of waters, of aquatic organisms, and of fields. Chlordecone is known to be neurotoxic, to increase prostate cancer, and to have negative effects on cognitive and motor development during infancy. In Guadeloupe, most of the freshwater species living in contaminated rivers exceed the French legal limit of 20 ?g·kg?1 wet weight. In the present study (ANR MACHLOMA), we chose a transcriptomic approach to study the cellular effects of chlordecone in the giant freshwater prawn Macrobrachium rosenbergii, an important economical species in Guadeloupe.

Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V19065
V19065

Éditeur(s) : University of Florida University of Florida ( Gainesville, FL )
Résumé : Sustainable Development Practice (MDP) Program final field practicum report
The MDP Program is administered jointly by the Center for Latin American Studies and the Center for African Studies.

Droits : Copyright Hans Goertz. Permission granted to the University of Florida to digitize, archive and distribute this item for non-profit research and educational purposes. Any reuse of this item in excess of fair use or other copyright exemptions requires permission of the copyright holder.
http://ufdc.ufl.edu/AA00023803/00001

Éditeur(s) : University of Florida University of Florida ( [Gainesville, FL] )
Résumé : Sustainable Development Practice (MDP) Program final field practicum report
The MDP Program is administered jointly by the Center for Latin American Studies and the Center for African Studies.

Droits : Copyright Gentry Mander. Permission granted to the University of Florida to digitize, archive and distribute this item for non-profit research and educational purposes. Any reuse of this item in excess of fair use or other copyright exemptions requires permission of the copyright holder.
http://ufdc.ufl.edu/AA00023805/00001

Éditeur(s) : The College of the Bahamas The College of the Bahamas ( Nassau, Bahamas )
Résumé : (Statement of Responsibility) School of Nursing and Allied Health Professions
First annual pinning ceremony held in the Forecourt, Portia M. Smith Student Services Centre, Sunday May 22, 2005 at the College of The Bahamas, Oakes Field Campus.
Bahamas
Bahamas
Bahamas

Droits : All rights reserved by the source institution.
http://ufdc.ufl.edu/AA00021212/00001

Éditeur(s) : Université des Antilles. Service commun de la documentation University of West Indies, Barbados
Extrait de : 52e congrès annuel de la Société caribéenne des plantes alimentaires / 52nd annual meeting of the Caribbean food crops society (CFCS), du 10 au 16 juillet 2016. INRA, CFCS
Description : Mulch application of Sargassum seaweed (Sargassum spp.) to soil can help to reduce beach contamination in the Caribbean Region while providing beneficial horticultural effects. This study investigated the effects of fresh Sargassum mulch on soil properties and plant growth in a test crop of tomato (Solanum lycopersicum L. â? ? HA 3019â? TM). Fresh Sargassum material (washed and unwashed) was applied as mulches (0, 5 and 8cm thick) to small field plots one week after transplanting of 3-week-old seedlings. The mulch material was raked away from the plots after three weeks exposure. Observations on soil moisture, electrical conductivity, pH and biological activity, and plant growth were made at 1 to 2-week intervals over a 6-week period with additional soil measurements after 10 weeks. Soil biological activity (respiration) was increased by the Sargassum mulch with values being similar for the 5cm and 8cm mulch layers. Soil moisture content, pH and electrical conductivity (EC) were increased as the mulch layer increased and EC values were only marginally reduced by Sargassum washing. An increase in plant growth compared to the control treatment was noted only in the washed Sargassum treatments. Potential benefits of Sargassum seaweed mulches on soil properties and plant growth can be nullified due to soil salinization effects.
Siècle(s) traité(s) : 21
Droits : CC-BY-NC-ND - Attribution - Pas d'utilisation commerciale - Pas de modification
Permalien : http://www.manioc.org/fichiers/V16269
V16269

Éditeur(s) : HAL CCSD
Résumé : International audience
STUDY QUESTION: Do freezing and in vitro culture procedures enhance the expression of proteins involved in apoptotic or autophagic pathways in murine pre-pubertal testicular tissue? SUMMARY ANSWER: IVM strongly modified apoptosis- and autophagy-related relative protein levels in mice testicular tissue whereas the impact of cryopreservation procedures was minimal at the end of the culture. WHAT IS KNOWN ALREADY: In vitro spermatogenesis remains a challenging technical issue as it imposes to find a very close balance between survival and death of germ cell natural precursors (i.e. gonocytes and spermatogonia), which will eventually undergo a complete spermatogenesis close to in vivo conditions. The establishment of efficient culture conditions coupled with suitable cryopreservation procedures (e.g. controlled slow freezing [CSF] and solid surface vitrification [SSV]) of pre-pubertal testicular tissue is a crucial step in the fields of fertility preservation and restoration to improve the spermatic yield obtained in vitro. STUDY DESIGN, SIZE, DURATION: Here, we study cryopreservation procedures (i.e. CSF or SSV) and the impact of culture media compositions. A first set of 66 mouse pre-pubertal testes were directly cultured during 30, 36, 38 and 60 days (D) from 2.5 to 6.5-day-old CD-1 mice to evaluate the impact of time-aspect of culture and to endorse the reverse phase protein microarrays (RPPM) technique as an adapted experimental tool for the field of in vitro spermatogenesis. Ninety others fresh, slow-frozen and vitrified pre-pubertal testes were cultured during 30 days for the principal study to evaluate the impact of cryopreservation procedures before and after culture. Thirty-four testes dissected from 2.5, 6.5, 36.5, 40.5, 42.5 and 62.5 days postpartum (dpp) mice, corresponding to the time frames of spermatogenesis orchestrated in vitro, were used as in vivo controls. PARTICIPANTS/MATERIALS, SETTING, METHODS: After in vitro culture, testicular tissue samples originated from 2.5 or 6.5-day-old CD-1 male mice were analyzed using RPPM. This targeted proteomic technique allowed us to assess the expression level of 29 apoptosis- and autophagy-related factors by normalizing blank-corrected signal values. In addition, morphological analyses (e.g. HES, PAS, TRA98 and CREM) and DNA fragmentation in intra-tubular cells (i.e. terminal deoxynucleotidyl transferase dUTP nick end labeling; TUNEL) were assessed for the distinct experimental conditions tested as well as for in vivo control mouse testes. MAIN RESULTS AND THE ROLE OF CHANCE: A validation of the RPPM procedure in the field of in vitro spermatogenesis was completed with assay and array robustness before a principal study concerning the evaluation of the impact of in vitro culture and cryopreservation procedures. The proportion of elongated spermatids and the total cell number per seminiferous tubule tended to be very different between the in vivo and in vitro conditions (P < 0.05), suggesting the presence of a beneficial regulation on the first spermatogenesis wave by intrinsic apoptosis (Caspase₉) and autophagy (Atg5) factors (P < 0.0003 and r2 = 0.74). Concerning the impact of culture media compositions, a basic medium (BM) composed of αMEM plus 10% KnockOut™ serum replacement and gentamicin supplemented with retinol (Rol) and vitamin E (Vit. E) was selected as the best culture medium for fresh 6.5 dpp tissue cultured during 30D with 27.7 ± 8.10% of seminiferous tubules containing elongated spermatids. Concerning the impact of cryopreservation procedures, SSV did not have any impact on the morphological parameters evaluated after culture in comparison to fresh tissue (FT) controls. The proportion of tubules with elongated spermatids on testicular explants cultured with BMRol+Vit. E was not different between SSV (6.6 ± 1.6%) and CSF (5.3 ± 1.9%); however, round spermatids were observed more frequently for SSV (19 ± 6.2%) than CSF (3.3 ± 1.9%, P = 0.0317). Even if the proportion of TUNEL-positive cells for BMRol+Vit. E was higher at D30 after SSV (4.12 ± 0.26%) than CSF (1.86 ± 0.12%, P = 0.0022) and FT (2.69 ± 0.33%, P = 0.0108), the DNA damages observed at the end of the culture (i.e. D30) were similar to respective 6.5 dpp controls. In addition, the relative protein level expression ratio of an apoptotic factor, the phosphorylated FADD on Fas, was reduced by 64-fold in vitrified testes cultured with BMRol+Vit. E. Furthermore, we found in this study that the StemPro®-34 SFM culture medium supplemented with growth factors (e.g. EGF, bFGF, GDNF and LIF) prevented the differentiation of spermatogonial stem cells in favor of a significant proliferation with a better architectural pattern than in vivo 6.5 dpp controls with an increase of seminiferous tubules area for FT (P = 0.0357) and CSF (P = 0.0317). LIMITATIONS REASONS FOR CAUTION: Despite our promising results, the evaluation of apoptotic- and autophagic-related proteins was studied for a limited amount of proteins and on global testicular tissue. WIDER IMPLICATIONS OF THE FINDINGS: The data presented herein will help to improve apoptotic and autophagic understanding during the first spermatogenic wave. Moreover, our findings illustrate for the first time that, using finely-tuned experimental conditions, a testicular in vitro culture combined with proteomic technologies may significantly facilitate the study of cryopreservation procedures and in vitro culture evaluations. This study may also contribute to improve work on testicular tissues from pre-pubertal and adolescent cancer survivors. STUDY FUNDING/COMPETING INTEREST(S): This study was supported by a Ph.D. grant from the Rouen Normandie Université and a financial support from 'la Ligue nationale contre le cancer' (both awarded to L.D.), funding from Institute for Research and Innovation in Biomedicine (IRIB), Agence de la Biomédecine, and co-supported by European Union and Région Normandie. Europe gets involved in Normandie with European Regional Development Fund (ERDF). The authors declare that there is no conflict of interest.
Molecular Human Reproduction

hal-01647081
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01647081
DOI : 10.1093/molehr/gax054
PUBMED : 29040674

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: Sampling design is a key issue when establishing species inventories and characterizing habitats within highly heterogeneous landscapes. Sampling efforts in such environments may be constrained and many field studies only rely on subjective and/or qualitative approaches to design collection strategy. The region of Cacao, in French Guiana, provides an excellent study site to understand the presence and abundance of Anopheles mosquitoes, their species dynamics and the transmission risk of malaria across various environments. We propose an objective methodology to define a stratified sampling design. Following thorough environmental characterization, a factorial analysis of mixed groups allows the data to be reduced and non-collinear principal components to be identified while balancing the influences of the different environmental factors. Such components defined new variables which could then be used in a robust k-means clustering procedure. Then, we identified five clusters that corresponded to our sampling strata and selected sampling sites in each stratum. RESULTS: We validated our method by comparing the species overlap of entomological collections from selected sites and the environmental similarities of the same sites. The Morisita index was significantly correlated (Pearson linear correlation) with environmental similarity based on i) the balanced environmental variable groups considered jointly (p = 0.001) and ii) land cover/use (p-value<0.001). The Jaccard index was significantly correlated with land cover/use-based environmental similarity (p-value = 0.001). CONCLUSIONS: The results validate our sampling approach. Land cover/use maps (based on high spatial resolution satellite images) were shown to be particularly useful when studying the presence, density and diversity of Anopheles mosquitoes at local scales and in very heterogeneous landscapes.
BMC Ecology

pasteur-00914104
https://hal-riip.archives-ouvertes.fr/pasteur-00914104
https://hal-riip.archives-ouvertes.fr/pasteur-00914104/document
DOI : 10.1186/1472-6785-13-45
PUBMED : 24289184

Éditeur(s) : Amer Geophysical Union
Résumé : Recent ROV dives and high-resolution bathymetric data acquired over the Ashadze fields on the Mid-Atlantic Ridge (13 degrees N) allow us to derive constraints on the regional and local geological setting of ultramafic-hosted hydrothermal fields. The active vent fields of Ashadze hydrothermal fields are located in the western axial valley wall, downslope from the termination of a prominent corrugated surface and in a transitional domain with respect to ridge segmentation. The study of the shipboard and ROV bathymetry shows that decameter (100 m by 60 m) to kilometer-scaled rockslides shape the axial valley wall slopes in this region. The Ashadze 1 vent field occurs on a coherent granular landslide rock mass that is elongated in an E-W direction. The Ashadze 1 vent field comprises hundreds of active and inactive sulfide chimneys. The Ashadze 2 vent field is located in a NNE-trending linear depression which separates outcrops of gabbros and serpentinized peridotites. Active black smokers in the Ashadze 2 field are located on ultramafic substratum in a 40-m diameter crater, 5-m deep. This crater recalls similar structures described at some vents of the Logatchev hydrothermal field (Mid-Atlantic Ridge 15 degrees N). We discuss the mode of formation for these craters, as well as that for a breadcrust-like array of radial fissures identified at Ashadze 1. We propose that hydrothermalism at Ashadze can be an explosive phenomena associated with geyser-like explosions. Our study also constrains the geological and geophysical context of the ultramafic-hosted Ashadze hydrothermal system that may use the oceanic detachment fault as a preferred permeability conduit.
Geochemistry Geophysics Geosystems (1525-2027) (Amer Geophysical Union), 2012-11 , Vol. 13 , N. 1 , P. Q0AG14

Droits : 2012. American Geophysical Union. All Rights Reserved.
http://archimer.ifremer.fr/doc/00111/22223/19895.pdf
DOI:10.1029/2012GC004433
http://archimer.ifremer.fr/doc/00111/22223/

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
The brittle to ductile transition (BDT) in rocks may strongly influence their transport properties (i.e., permeability, porosity topology ...) and the maximum depth and temperature where hydrothermal fluids may circulate. To examine this transition in the context of Icelandic crust, we conducted deformation experiments on a glassy basalt (GB) and a glass-free basalt (GFB) under oceanic crust conditions. Mechanical and micro-structural observations at a constant strain rate of 10(-5) s(-1) and at confining pressure of 100-300 MPa indicate that the rocks are brittle and dilatant up to 700-800 degrees C. At higher temperatures and effective pressures the deformation mode becomes macroscopically ductile, i.e., deformation is distributed throughout the sample and no localized shear rupture plane develops. The presence of glass is a key component reducing the sample strength and lowering the pressure of the BDT. In the brittle field, strength is consistent with a Mohr-Coulomb failure criterion with an internal coefficient of friction of 0.42 for both samples. In the ductile field, strength is strain rate-and temperature-dependent and both samples were characterized by the same stress exponent in the range 3 < n < 4.2 but by very different activation energy Q(GB) = 59 +/- 15 KJ/mol and Q(GFB) = 456 +/- 4 KJ/mol. Extrapolation of these results to the Iceland oceanic crust conditions predicts a BDT at similar to 100 degrees C for a glassy basalt, whereas the BDT might occur in non-glassy basalts at deeper conditions, i.e., temperatures higher than 550 +/- 100 degrees C, in agreement with the Icelandic seismogenic zone.
ISSN: 0148-0227

hal-00760905
https://hal.archives-ouvertes.fr/hal-00760905
DOI : 10.1029/2011JB008884

Éditeur(s) : Elsevier
Résumé : The family Kareniaceae is mostly known in France for recurrent blooms of Karenia mikimotoi in the Atlantic, English Channel, and Mediterranean Sea and for the unusual green discoloration in the saltwater lagoon of Diana (Corsica) caused by Karlodinium corsicum in April 1994. In terms of diversity, this taxonomic group was long overlooked owing to the difficult identification of these small unarmored dinoflagellates. In this study, thanks to the molecular characterization performed on single cells from field samples and cultures, twelve taxonomic units were assigned to the known genera Karenia, Karlodinium and Takayama, whereas one could not be affiliated to any described genus. The molecular phylogeny inferred from the D1–D2 region of the LSU rDNA showed that five of them formed a sister taxon of a known species, and could not be identified at species-level, on the basis of molecular analysis only. Among these latter taxa, one Karlodinium which was successfully cultured was investigated by studying the external morphological features (using two procedures for cells fixation), ultrastructure, pigment composition, and haemolytic activity. The results of our analyses corroborate the genetic results in favour of the erection of Karlodinium gentienii sp. nov., which possesses an internal complex system of trichocysts connected to external micro-processes particularly abundant in the epicone, and a peculiar pigment composition. In addition, preliminary assays showed a haemolytic activity.
Harmful Algae (1568-9883) (Elsevier), 2014-12 , Vol. 40 , P. 75-91

Droits : 2014 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00225/33611/32310.pdf
DOI:10.1016/j.hal.2014.10.006
http://archimer.ifremer.fr/doc/00225/33611/

Éditeur(s) : HAL CCSD
Résumé : The Earth's magnetic field shows a large range of temporal variations from the year to several million years. I studied during my PhD thesis several aspects of these fluctuations, from recent secular variations to reversals. The first part of my manuscript deals with archeomagnetism, a discipline that allows to track the temporal variations of the Earth's magnetic field through millennia, mainly from archeological materials. I studied two sets of samples , one from Greece (Neolithic period 6800-3200 B.C.) and the other from Mexico (Palenque, Maya Classic period 320-840 A.D.), to acquire new archeointensity data in order to better constrain the secular variation of the geomagnetic field. By comparing my data with those available in the literature and with the various global and regional models, I showed that the secular variations during the Neolithic in Greece and during the first millennium in Central America are poorly defined. My data suggest that local components, not described by global models, may exist in these regions. They reinforce the importance of developing specific regional models. As a consequence, the acquisition of new high quality data is of main importance. The second part presents the description of a geomagnetic field reversal. This work was based on two points : first by studying transitional directions to provide new constraints on the possible preferred longitudinal paths of virtual geomagnetic poles (VGPs) and second by checking transitional paleointensities obtained on a volcanic sequence in Akaroa volcano (New Zealand). Indeed the transitional field intensity is significantly higher than the field intensity before and after the reversal. We re-sampled this sequence, and the directional results show a complex sequence of N-T-R-T-N-T-R polarity. The transitional VGPs obtained are clustered in two longitudinal bands through Australia and America. This observation seems to reinforce the assumption of a core-mantle interaction over several million years. Following a rock magnetic study, I selected samples that could provide a value for the Thellier and multispecimen paleointensity methods. The obtained paleointensity are relatively low (about 20 μT) during the polarity change and strong at the end of the sequence. Based both on the field strength values and on the radiochronological ages, showing that the sequence was erupted in a very short time, I suggest that only the C4AR.1n-C4Ar.1r reversal was recorded in this sequence. In this assumption, the reversal shows a complex path comparable to other reversals recorded in the northern hemisphere (for example the Steens Mountain ), including a rebound before stabilizing. Finally the last part is devoted to the development of a new methodology and a new apparatus to determine absolute paleointensity. Following the low success rate of paleointensity experiments from the previous study, I decided to test the multispecimen protocol, which can be applied to samples yielding a predominant multidomaine behavior. The main technical drawback of this method lies in the application of the laboratory field along the natural remanent magnetization, a difficult task to perform accurately in standard paleointensity ovens. Thus, we decided to adapt sample holders from our standard oven in order to allow the sample orientation in space and to develop an ultra-fast heating oven prototype particularly well-suited for this method, allowing to apply the laboratory field in the 3 dimensions. I checked the different multispecimen protocols on historical lavas from Reunion and Etna volcano, yielding very different magnetic mineralogies. For all flows, I obtained paleointensities very close from the expected values, regardless from the magnetic mineralogy, revealing the feasibility of our apparatus and the promising interest of the method. The application of various corrections on the statistical estimation of the intensity value or on the cooling rate had no significant impact on my results.
La première partie de ma thèse porte sur l'archéomagnétisme, discipline qui permet de retracer l'évolution temporelle du champ magnétique terrestre au travers des derniers millénaires, principalement à partir des matériaux archéologiques. J'ai étudié deux jeux d'échantillons provenant pour l'un de la Grèce (période néolithique, 6800-3200 avant J.C.) et pour l'autre du Mexique (Palenque, période Maya Classique 320-840 après J.C.), dans le but d'acquérir de nouvelles données d'archéointensité et de mieux contraindre la variation séculaire du champ magnétique terrestre. La comparaison de mes données avec celles disponibles dans la bibliographie et avec les différents modèles globaux et régionaux a mis en évidence que les variations séculaires au Néolithique en Grèce et au cours du premier millénaire en Amérique Centrale sont très mal définies. Mes données suggèrent que des composantes locales, non prisent en compte dans les modèles globaux peuvent exister au niveau de ces régions. Elles renforcent l'intérêt de développer des modèles régionaux précis. Pour ce faire, l'acquisition de nouvelles données de haute qualitéest un élément majeur. La deuxième partie traite de la description d'un renversement du champ magnétique terrestre. Cette étude a été basée sur deux points précis : étudier les directions transitionnelles afin d'apporter de nouvelles contraintes sur le possible confinement longitudinal des pôles géomagnétiques virtuels (PGV) d'une part, et d'autre part vérifier des paléointensités transitionnelles obtenues sur la séquence volcanique d'Akaroa (Nouvelle Zélande), dont l'intensité est significativement supérieure à celles des intensités avant et après le renversement. Nous avons ré-échantillonné cette séquence, et l'évolution directionnelle obtenue pour ce renversement est une succession complexe de polarités N-T-R-T-N-T-R. Les PGV obtenus semblent se regrouper sous deux bandes longitudinales sous l'Australie et l'Amérique, ce qui renforce l'hypothèse d'une interaction entre le manteau et le noyau sur plusieurs millions d'années. Suite à une étude de minéralogie magnétique, j'ai sélectionné les échantillons susceptibles de fournir une valeur de paléointensité par les méthodes de Thellier et du multispecimen. Les paléointensités obtenues sont relativement faibles (environ 20 μT) au cours du changement de polarité et forte à la fin de la séquence. Mon interprétation, basée à la fois sur les valeurs de l'intensité du champ et sur les données radiochronologiques montrant que la séquence s'est mise en place très rapidement, est de considérer que seul le renversement C4Ar.1n-C4Ar.1r a été enregistré dans cette séquence. Dans cette hypothèse, le renversement montre un cheminement complexe comparable à d'autres renversements enregistrés dans l'hémisphère nord (comme celui de la Steens Mountain par exemple), incluant un phénomène de rebond avant de se stabiliser. La troisième partie de ma thèse est consacrée au développement d'une nouvelle méthodologie et d'un nouvel appareillage pour déterminer des paléointensités. Le faible taux de réussite des expériences de paléointensité de l'étude précédente m'a poussé à m'intéresser au protocole multispecimen, qui peut s'appliquer aux échantillons possédant un comportement polydomaine. L'inconvénient technique majeur de cette méthode réside dans l'application du champ le long de l'aimantation naturelle, difficile à réaliser avec précision dans les fours standards. Pour ce faire, nous avons décidé de développer des porte-échantillons permettant d'orienter les échantillons dans l'espace pour le four standard et un prototype de four à chauffage ultra-rapide particulièrement bien adapté avec la possibilité d'orienter le champ appliqué dans les 3 dimensions. J'ai testé les différents protocoles de la méthode sur des laves historiques de la Réunion et de l'Etna, possédant des minéralogies très différentes. Pour l'ensemble des coulées étudiées, j'ai obtenu des paléointensités très proches des valeurs attendues, et ce indépendamment de la minéralogie, révélant ainsi le faisabilité de notre appareillage et le côté prometteur de la méthode. L'application de diverses corrections sur la statistique d'estimation de la valeur de l'intensité ou sur le taux de refroidissement n'ont eu aucun impact notable sur mes résultats.
https://tel.archives-ouvertes.fr/tel-00719380

tel-00719380
https://tel.archives-ouvertes.fr/tel-00719380
https://tel.archives-ouvertes.fr/tel-00719380/document
https://tel.archives-ouvertes.fr/tel-00719380/file/thesefanjat2012.pdf

Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BackgroundFor a long time biologists and linguists have been noticing surprising similarities between the evolution of life forms and languages. Most of the proposed analogies have been rejected. Some, however, have persisted, and some even turned out to be fruitful, inspiring the transfer of methods and models between biology and linguistics up to today. Most proposed analogies were based on a comparison of the research objects rather than the processes that shaped their evolution. Focusing on process-based analogies, however, has the advantage of minimizing the risk of overstating similarities, while at the same time reflecting the common strategy to use processes to explain the evolution of complexity in both fields.ResultsWe compared important evolutionary processes in biology and linguistics and identified processes specific to only one of the two disciplines as well as processes which seem to be analogous, potentially reflecting core evolutionary processes. These new process-based analogies support novel methodological transfer, expanding the application range of biological methods to the field of historical linguistics. We illustrate this by showing (i) how methods dealing with incomplete lineage sorting offer an introgression-free framework to analyze highly mosaic word distributions across languages; (ii) how sequence similarity networks can be used to identify composite and borrowed words across different languages; (iii) how research on partial homology can inspire new methods and models in both fields; and (iv) how constructive neutral evolution provides an original framework for analyzing convergent evolution in languages resulting from common descent (Sapir’s drift).ConclusionsApart from new analogies between evolutionary processes, we also identified processes which are specific to either biology or linguistics. This shows that general evolution cannot be studied from within one discipline alone. In order to get a full picture of evolution, biologists and linguists need to complement their studies, trying to identify cross-disciplinary and discipline-specific evolutionary processes. The fact that we found many process-based analogies favoring transfer from biology to linguistics further shows that certain biological methods and models have a broader scope than previously recognized. This opens fruitful paths for collaboration between the two disciplines.
ISSN: 1745-6150

Droits : http://creativecommons.org/licenses/by/
hal-01378396
http://hal.upmc.fr/hal-01378396
http://hal.upmc.fr/hal-01378396/document
http://hal.upmc.fr/hal-01378396/file/unity.pdf
DOI : 10.1186/s13062-016-0145-2

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Lithospheric-scale faults related to oblique subduction are responsible for some of the most hazardous earthquakes reported worldwide. The mega-thrust in the Sunda sector of the Sumatran oblique subduction has been intensively studied, especially after the infamous 2004 Mw 9.1 earthquake, but its onshore kinematic complement within the Sumatran subduction, the transform Sumatran Fault System, has received considerably less attention. In this paper, we apply a combination of analysis of Digital Elevation Models (ASTER GDEM) and field evidence to resolve the kinematics of the leading edge of deformation of the northern sector of the Sumatran Fault System. To this end, we mapped the northernmost tip of Sumatra, including the islands to the northwest, between 4.5°N and 6°N. Here, major topographic highs are related to different faults. Using field evidence and our GDEM structural mapping, we can show that in the area where the fault bifurcates into two fault strands, two independent kinematic regimes evolve, both consistent with the large-scale framework of the Sumatran Fault System. Whereas the eastern branch is a classic Riedel system, the western branch features a fold-and-thrust belt. The latter contractional feature accommodated significant amounts (c. 20%) of shortening of the system in the study area. Our field observations of the tip of the NSFS match a strain pattern with a western contractional domain (Pulau Weh thrust splay) and an eastern extensional domain (Pulau Aceh Riedel system), which are together characteristic of the tip of a propagating strike-slip fault, from a mechanical viewpoint. For the first time, we describe the strain partitioning resulting from the propagation of the NSFS in Sumatra mainland. Our study helps understanding complex kinematics of an evolving strike-slip system, and stresses the importance of field studies in addition to remote sensing and geophysical studies.
ISSN: 0040-1951

hal-01467196
https://hal.archives-ouvertes.fr/hal-01467196
DOI : 10.1016/j.tecto.2016.04.050

Éditeur(s) : Elsevier Science Bv
Résumé : The overexploitation of fishery resources has led to a major fisheries crisis. In this context, artisanal fisheries, and in particular small-scale coastal fisheries, appear as relevant alternatives for a sustainable use of coastal resources. Marine Protected Areas (MPA) are more and more used as management tools for these fisheries, as protection effects and targeted access regulations may benefit to commercial fishers. Managers and scientists need then quantitative information not only to adapt their management to the fishing activity present on their territory, but also to estimate the effects of MPA management on it. This study provides catch and effort estimates that are essential for appraising and managing the artisanal fishery in the Côte Bleue Marine Park (CBMP), a French Mediterranean MPA including two No-Take Zones of different age and size. A field protocol was defined and implemented between July 2009 and June 2010 within the CBMP. Seven métiers were identified and characterized by target species, gear type, fishing grounds and fishing periods. During the one-year studied period, 3512 fishing trips and 4645 fishing operations were performed by 30 active boats in the Côte Bleue fishing territory, amounting to 9500 km of immersed nets. In total, approximately 130 tons of catch were landed in the six CBMP harbors, out of which 58% depend on the three main species caught on the Côte Bleue: hake (Merluccius merluccius), gilthead seabream (Sparus aurata) and common sole (Solea solea). The presented methodology could be part of a long term monitoring requiring close collaboration with local fishers. It enables adaptive management with respect to changes in fishing pressure (from inside and outside the MPA) that may impact the environment and its resources.
Fisheries Research (0165-7836) (Elsevier Science Bv), 2014-06 , Vol. 154 , P. 93-101

Droits : 2014 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00180/29120/29367.pdf
DOI:10.1016/j.fishres.2014.02.006
http://archimer.ifremer.fr/doc/00180/29120/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A detailed rock-magnetic and archeointensity study was carried out on materials baked by a western Mexican artisan following traditional techniques to produce faithful reproductions of archeological pieces of the Michoacan region (Western Mesoamerica). The field strength at the site (41.0 +/- 0.51 mu T) was measured with a fluxgate magnetometer and the temperature of the furnace during the baking process was monitored continually by means of a thermocouple placed in the middle of the baking cavity.;Rock-magnetic experiments performed on the raw material (clay and paste) and on in situ prepared baked ceramics and bricks included measurement of thermomagnetic curves (susceptibility and strong-field magnetization versus temperature), first-order reversal curves (FORC), anisotropy of magnetic susceptibility (AMS) and anisotropy of thermoremanent magnetization (A-TRM). Magnetite and probably hematite are present in the samples as carriers of the remanence. Hysteresis ratios suggest that the samples fall in the pseudo-single-domain grain size region, which may indicate a mixture of multidomain and a significant amount of single-domain grains.;Ceramic pieces and brick fragments were subjected to the Thellier-Coe archeointensity method and to an alternative paleointensity experiment, with a TRIAXE magnetometer, in order to check whether they are faithful recorders of the local geomagnetic field strength.;Mean raw-intensity of sample M1 (pottery) overestimates a 7% the expected site intensity, while those corresponding to the brick samples (LQ1 and LQ2) underestimate it 15%. Brick sample LNQ shows a slightly lower intensity (7%), but agrees with the expected site intensity within the experimental uncertainty. The intensity retrieved from the volcanic fragment also included closely reproduces the expected intensity. After A-TRM and cooling-rate corrections, all mean raw values move closer to the expected intensity.;Measurement of temperatures at different parts inside the kiln (bottom and upper parts of both central and peripheral parts) revealed the existence of significant thermal gradients, similar to those observed in ovens from other localities. Different cooling rates are then expected in a single oven.;The scatter in the intensity determinations observed in this study, retrieved from pieces elaborated together in the same oven, could arise from this differentiated cooling rate within the oven and thus, to an inappropriate cooling rate correction in the archeointensity protocol. As this situation was probably reproduced in the baking of ancient ceramic artifacts, a better knowledge of the temperature distribution inside these types of kiln would be desirable in order to choose the appropriate cooling rate correction.
ISSN: 0031-9201

hal-00644559
https://hal.archives-ouvertes.fr/hal-00644559
DOI : 10.1016/j.pepi.2011.06.007

Résumé : During the years 1972-1993, kepone a persistent pesticide has been used in the banana fields of the French West Indies (Martinique and Guadeloupe) to content a weevil. A slow desorption of the molecule from soil induces its transfer to the sea through the rivers from leaching and erosion. This study intended to take stock on the contamination by kepone of the fishery species around the islands fifteen years after the kepone ban. Furthermore other chemical pollutants were sought in fish and shellfish around the Martinique island. The results confirmed persistence of marine fauna contamination by kepone, mainly in the alluvium areas in front of polluted rivers. They shown also that this contamination may spread more widely but with fast decreasing through the marine food webs. For the other pollutants sought, the results were in general lower than the statutory values. Within these substances, only mercury gave a signal close to the prescribed threshold for top predator samples. Finally, on the whole the observed systems appeared preserved from human chemical pollutants, apart from kepone.
Pendant les années 1972-1993 un pesticide persistant, la chlordécone, a été utilisé dans les bananeraies des Antilles françaises (Martinique et Guadeloupe) pour lutter contre un charançon. Une désorption lente de la molécule fixée dans les sols conduit à son transfert progressif dans les milieux aquatiques puis vers le domaine marin au gré du lessivage et de l'érosion des sols contaminés. La présente étude visait à faire le point sur la contamination de la faune halieutique côtière des Antilles françaises quinze ans après l'interdiction d'usage de la molécule. En parallèle, une recherche systématique d'autres polluants chimiques a été effectuée sur des poissons et des crustacés ainsi que dans des sédiments autour de la Martinique. Les résultats confirment la persistance d'une contamination de la faune par la chlordécone, particulièrement dans les zones alluvionnaires des cours d'eau contaminés. Ils montrent également que cette contamination diffuse plus largement en s'atténuant, à travers les réseaux trophiques marins. Parmi les autres substances recherchées, les résultats dans les espèces d'intérêt halieutique se situent en général sous les concentrations maximales admissibles fixées par la réglementation. Parmi ces molécules, seul le mercure donne un signal de contamination proche de ce seuil chez des grands prédateurs. Ce constat souligne l'état de préservation des milieux observés vis-à-vis de la contamination chimique environnementale, hormis bien évidemment le cas de la chlordécone.

Droits : 2010 Onema / Ifremer
http://archimer.ifremer.fr/doc/2009/rapport-6896.pdf
http://archimer.ifremer.fr/doc/00000/6896/

Éditeur(s) : Wiley-blackwell Publishing, Inc
Résumé : Recent theoretical and field studies conducted in both terrestrial and marine ecosystems have suggested that diversity could be a more complex and multi-component concept than previously thought. However, it is still poorly understood to what extent the information provided by the various indices is complementary with regard to diversity, and to what extent this complementarity is reproducible in different situations or at different scales of observation. In the present work, we have analysed the reproducibility of the empirical relationships between 11 diversity indices related to four major aspects (components) of species diversity (species richness, rarity, evenness and species taxonomy) in order to determine whether there is a general pattern of redundancy or complementarity in diversity measures that holds across years, areas and spatial scales. We have applied this approach to groundfish diversity through the analysis of 2404 trawl hauls collected during the first large-scale annual surveys carried out using a single sampling design throughout the northern Mediterranean Sea (ranging from 36.3 to 45.7 degrees N, and 5.3 degrees W to 28 degrees E). Whatever the years, areas and scales studied, we found a strong reproducibility in the number and the nature of the main complementary components of diversity. The whole set of diversity indices considered may be roughly split into 6 complementary groups of descriptors. This result highlights that, in contrast to what is still the usual practice, monitoring diversity should not be based on only one or two of the most widely used components, even at large scale. Finally, in a context where developing tools for monitoring diversity is considered as a high priority worldwide, the strong reproducibility of the relationships between diversity indices we observed offers a basis for discussion of the feasibility and relevance of proposing a general shortlist of indices for monitoring diversity at different management scales.
Ecography (0906-7590) (Wiley-blackwell Publishing, Inc), 2010-12 , Vol. 33 , N. 6 , P. 1123-1135

Droits : 2010 The Authors / Ecography
http://archimer.ifremer.fr/doc/00029/14064/11382.pdf
DOI:10.1111/j.1600-0587.2009.06259.x
http://archimer.ifremer.fr/doc/00029/14064/

Éditeur(s) : HAL CCSD Institute of Electrical and Electronics Engineers
Résumé : International audience
: A new set-up for exposure of human cells in vitro at 37°C to pulse-modulated 300 MHz and 500 MHz signals of future magnetic resonance imaging (MRI) systems is designed, built up, and characterized. Two dipole antennas, specifically designed for ultra high field MRI, are used as radiating structures. The electromagnetic (EM) field distribution inside the incubator containing the cells is computed, and it is shown to be in a good agreement with measurements. The electric field at the cell level is quantified numerically. Local, 1g average, and averaged over the culture medium volume SAR are provided along with the standard deviation values for each well. Temperature increments are measured inside the culture medium during the exposure using an optical fiber thermometer. Then we identify the pulse parameters corresponding to the thermal threshold of 1°C, usually considered as a threshold for thermally-induced biological effects. For these parameters, the induction of heat shock proteins is assessed to biologically verify a potential thermal response of cells. The data demonstrate that, under the considered experimental conditions, exposure to pulsemodulated radiations emulating typical ultra high field MRI signals, corresponding to temperature increments below 1°C, does not trigger any heat shock response in human brain cells.
ISSN: 0018-9294

hal-00874329
https://hal.archives-ouvertes.fr/hal-00874329
DOI : 10.1109/TBME.2013.2270371
PUBMED : 23799680

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Within the framework of the international field campaign COPS (Convective and Orographically induced Precipitation Study), a large suite of state-of-the-art meteorological instrumentation was operated, partially combined for the first time. This includes networks of in situ and remote-sensing systems such as the Global Positioning System as well as a synergy of multi-wavelength passive and active remote-sensing instruments such as advanced radar and lidar systems. The COPS field phase was performed from 01 June to 31 August 2007 in a low-mountain area in southwestern Germany/eastern France covering the Vosges mountains, the Rhine valley and the Black Forest mountains. The collected dataset covers the entire evolution of convective precipitation events in complex terrain from their initiation, to their development and mature phase until their decay. Eighteen Intensive Observations Periods with 37 operation days and eight additional Special Observations Periods were performed, providing a comprehensive dataset covering different forcing conditions. In this article, an overview of the COPS scientific strategy, the field phase, and its first accomplishments is given. Highlights of the campaign are illustrated with several measurement examples. It is demonstrated that COPS research provides new insight into key processes leading to convection initiation and to the modification of precipitation by orography, in the improvement of quantitative precipitation forecasting by the assimilation of new observations, and in the performance of ensembles of convection-permitting models in complex terrain.
ISSN: 0035-9009

hal-00565513
https://hal.archives-ouvertes.fr/hal-00565513
DOI : 10.1002/qj.752

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : International audience
The influence of magnetic interactions on the anisotropy of magnetic susceptibility (AMS) have been largely studied by several theoretical models or experiments. Numerical models have shown that when magnetostatic interactions occur, the distributions of particles over the volume rather than their individual orientations control the AMS. We have shown recently from a comprehensive rock magnetic study and from a theoretical 2-dimensional (2-D) model that single domain particles closely packed in globule aggregates could produce strong local random interaction magnetic fields which could influence the magnetic susceptibility and decrease the degree of anisotropy. In this paper, we first present in detail this 2-D theoretical model and then we extend it to the 3-D case. The possible distribution function of the magnetostatic interaction fields comprises two extreme states: it is either isotropic or ordered. The former case corresponds to the thermal-demagnetized state while the second case corresponds to the alternating field (AF) demagnetized state. We show that when easy axes of magnetization are not uniformly distributed, the degree of anisotropy decreases as the interaction field increases in both AF- and thermal-demagnetized states in 2-D and 3-D geometry. Thus we conclude that random magnetic fields generated by a random arrangement of magnetic particles over the sample volume decrease the degree of anisotropy of AMS and may alter the magnetic fabric.
ISSN: 0039-3169

hal-00758113
https://hal.archives-ouvertes.fr/hal-00758113
https://hal.archives-ouvertes.fr/hal-00758113/document
https://hal.archives-ouvertes.fr/hal-00758113/file/SGEG-2012-HAL.pdf
DOI : 10.1007/s11200-010-9097-7