Éditeur(s) : HAL CCSD BioMed Central
Résumé : International audience
BACKGROUND: Sampling design is a key issue when establishing species inventories and characterizing habitats within highly heterogeneous landscapes. Sampling efforts in such environments may be constrained and many field studies only rely on subjective and/or qualitative approaches to design collection strategy. The region of Cacao, in French Guiana, provides an excellent study site to understand the presence and abundance of Anopheles mosquitoes, their species dynamics and the transmission risk of malaria across various environments. We propose an objective methodology to define a stratified sampling design. Following thorough environmental characterization, a factorial analysis of mixed groups allows the data to be reduced and non-collinear principal components to be identified while balancing the influences of the different environmental factors. Such components defined new variables which could then be used in a robust k-means clustering procedure. Then, we identified five clusters that corresponded to our sampling strata and selected sampling sites in each stratum. RESULTS: We validated our method by comparing the species overlap of entomological collections from selected sites and the environmental similarities of the same sites. The Morisita index was significantly correlated (Pearson linear correlation) with environmental similarity based on i) the balanced environmental variable groups considered jointly (p = 0.001) and ii) land cover/use (p-value<0.001). The Jaccard index was significantly correlated with land cover/use-based environmental similarity (p-value = 0.001). CONCLUSIONS: The results validate our sampling approach. Land cover/use maps (based on high spatial resolution satellite images) were shown to be particularly useful when studying the presence, density and diversity of Anopheles mosquitoes at local scales and in very heterogeneous landscapes.
BMC Ecology

pasteur-00914104
https://hal-riip.archives-ouvertes.fr/pasteur-00914104
https://hal-riip.archives-ouvertes.fr/pasteur-00914104/document
DOI : 10.1186/1472-6785-13-45
PUBMED : 24289184

Éditeur(s) : Université du Littoral Côte d'Opale (Dunkerque)
Résumé : In the Bay of Biscay and Celtic Sea waters, hake is considered as genetically homogeneous and form a unique stock with identical meristic characteristics. The vertebral mean vary from 50,68 (vertebrae) during the first year of life to 51,11 (vertebrae) for adults. 0-group Merluccius display a rapid growth with significant interannual variability (0.71 mm.day-1 in 2001 versus 0.74 mm.day-1 in 2002). The spawning period occurs in April and the average length on the firth January following the hatching is of 17.3 cm (first seasonal check / increment on the sagittal otolith is located about 0.143 cm from the nucleus). At the end of the first year of life the average length is about 24 cm. The longevity of the species is important and growth parameters (L = 138,24 cm ; K = 0,132) explain natural mortality coefficient of M = 0.21. No difference for growth between male and female has been observed for this stock. The ratio total weight / eviscerated weight is equal to Fc = 1,086. Both male and female have same spatial and bathymetric distribution. Juveniles are found in deep waters (< 17 cm length) and move to coastal waters where they display an average length of (33 cm length). Longer individuals are found in nursery areas where they feed and grow then move to deeper areas to spawn. Nursery areas are numerous and located in the Celtic Sea and in the bay of Biscay. In the bay of Biscay, disturbances resulted from hydrondynamics affect the settlement on the nursery grounds particularly in the southern part of the bay. Diet composition varies with age. Juveniles feed mainly on crustaceans (Euphausia kroni). At the length of 23 cm, individuals feed strictly on fishes. Sizes of preys are proportional with sizes of predators and preys are composed mainly of species that feed and reproduce close to the bottom. Cannibalism has been observed for this specie, and increases with age notably in the northern part of the bay of Biscay and in the Celtic Sea. Main preys are 0-group juveniles. This specie is assumed to be a passive predator catching its preys when they come to feed in the bottom. Although they are punctual, these results have been obtained after studies on the evolution of sizes during the first year of life (daily increments measurements) and on the spawning period parameters (back-calculating). Average length on the firth January following hatching and the position of the first seasonal check on the otolith are based on observations of the sizes on the firth January following hatching (obtained with growth rates and spawning period parameters). The results are similar to those described in previous studies, nevertheless they have to be confirmed with growth and diet composition analyses. A long term study appear essential to determine biological and ecological parameters of this species for sustainable management of the stock.
Les alertes quant à la surexploitation du stock de merlu européen sont nombreuses et récurrentes. Seulement l'estimation du niveau réel de l'état du stock a toujours posé des problèmes du fait de certaines lacunes dans la connaissance de la biologie et de l'écologie de cette espèce. Dans les eaux du golfe de Gascogne et de la mer Celtique, le merlu européen fait partie de la même population génétique et possède les mêmes caractéristiques meristiques. Sa moyenne vertébrale est de 50,68 durant sa première année de vie et évolue pour se stabiliser à 51,11 chez l'adulte. La croissance du merlu durant sa première année de vie et très rapide mais présente une variabilité interannuelle significative (0,71 mm .J-1 en 2001 et 0,74 mm .J-1 en 2002). Sa période de ponte maximale se déroule au mois d'avril et sa longueur au premier janvier suivant sa naissance est de 17,3 cm (la première marque hivernale est positionnée à 0,143 cm du nucléus de la sagittae). Au terme de sa première année de vie le merlu atteint une longueur de 24 cm. Sa longévité est assez longue (23 ans environ) et ses paramètres de croissance (L = 138,24 cm ; K = 0,132) permettent d'estimer son coefficient de mortalité naturelle à M = 0,21. Il n'a pas été établi de croissance différentielle entre sexe chez le merlu dans ces eaux. Le rapport poids total / poids éviscéré a été estimé à Fc = 1,086. Mâles ou femelles, les merlus ont une même répartition spatiale et bathymétrique. En général, ils sont très profonds à leurs stades juvéniles (< 17 cm) et ils se dirigent vers les eaux côtières pour les atteindre à 33 cm de longueur environ. Au-delà de cette taille, les merlus se concentrent au niveau des zones de nourricerie pour s'y alimenter avant de rejoindre les eaux plus profondes pour y pondre. Les zones de nourricerie du merlu sont très nombreuses et sont localisées en mer Celtique et dans le golfe de Gascogne aussi bien dans sa partie sud que dans sa partie nord. Les perturbations importantes dans l'hydrodynamisme du golfe de Gascogne (upwelling) semble influencer les niveaux de colonisation des zones de nourricerie notamment celles situées dans la partie sud du golfe. Le régime alimentaire du merlu évolue avec l'âge. Juvénile, il se nourrit principalement de crustacés (Euphausia krohni) et devient ichtyophage exclusif dès 23 cm de longueur. Le cannibalisme est une réalité chez le merlu et les merlus-proies sont les juvéniles du groupe d'âge G-0. Il s'intensifie avec l'âge notamment dans la partie nord du golfe de Gascogne et en mer Celtique ; Il est très faible dans le sud du golfe de Gascogne. La taille des proies évolue avec la taille du merlu et les poissons proies sont en général des espèces qui vont se nourrir ou se reproduire sur le fond. Ce comportement alimentaire fait que le merlu est un prédateur peu actif et qui attaque ses proies lorsqu'elles viennent sur le fond. Ces résultats, bien qu'ils ne soient que ponctuels, ont été obtenus après avoir déterminé le schéma d'évolution de la longueur du merlu durant sa première année de vie (dénombrement des accroissement journaliers) et des paramètres de sa période de ponte (rétro-calcul).La taille au premier hiver et la position de la première marque hivernale ont été déterminées en relativisant nos observations à l'estimation de la longueur du merlu au premier janvier suivant sa naissance : celle-ci étant obtenue en utilisant le taux de croissance et les paramètres de la période de ponte. Bien que l'ensemble des résultats obtenus, en ce qui concerne la répartition spatiale et les données sur la période de ponte, soient généralement conformes à ceux décrits dans la littérature, il est nécessaire de confirmer ceux concernant la croissance et le régime alimentaire. Pour cela, une étude à plus long terme semble indispensable pour parvenir à bien maîtriser l'ensemble des paramètres de biologie et d'écologie du merlu permettant ainsi une meilleure gestion de son stock.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2004/these-1247.pdf
http://archimer.ifremer.fr/doc/00000/1247/

Éditeur(s) : HAL CCSD Seismological Society of America
Résumé : With the assistance of the ASTER team (M. Arnold, G. Aumaître, D. Bourlès, and K. Keddadouche)
International audience
The Bulnay earthquake of 23 July 1905 (Mw 8.3–8.5), in north‐central Mongolia, is one of the world’s largest recorded intracontinental earthquakes and one of four great earthquakes that occurred in the region during the twentieth century. The 375 km long surface rupture of the left‐lateral, strike‐slip, N095°E‐trending Bulnay fault associated with this earthquake is remarkable for its pronounced expression across the landscape and for the size of features produced by previous earthquakes. Our field observations suggest that in many areas the width and geometry of the rupture zone is the result of repeated earthquakes; however, in those areas where it is possible to determine that the geomorphic features are the result of the 1905 surface rupture alone, the size of the features produced by this single earthquake are singular in comparison to most other historical strike‐slip surface ruptures worldwide. Along the 80 km stretch, between 97.18° E and 98.33° E, the fault zone is characterized by several meters width and the mean left‐lateral 1905 offset is 8.9±0.6  m with two measured cumulative offsets that are twice the 1905 slip. These observations suggest that the displacement produced during the penultimate event was similar to the 1905 slip. Morphotectonic analyses carried out at three sites along the eastern part of the Bulnay fault allow us to estimate a mean horizontal slip rate of 3.1±1.7  mm/yr over the Late Pleistocene–Holocene period. In parallel, paleoseismological investigations show evidence for two earthquakes prior to the 1905 event, with recurrence intervals of ∼2700–4000  yrs.
ISSN: 0037-1106

hal-01179837
https://hal.archives-ouvertes.fr/hal-01179837
https://hal.archives-ouvertes.fr/hal-01179837v2/document
https://hal.archives-ouvertes.fr/hal-01179837/file/rizza2015.pdf
DOI : 10.1785/0120140119

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : under revision for IJCV
International audience
The k-nearest neighbors (k-NN) classification rule has proven extremely successful in countless many computer vision applications. For example, image categorization often relies on uniform voting among the nearest prototypes in the space of descriptors. In spite of its good properties, the classic k-NN rule suffers from high variance when dealing with sparse prototype datasets in high dimensions. A few techniques have been proposed to improve k-NN classification, which rely on either deforming the nearest neighborhood relationship or modifying the input space. In this paper, we propose a novel boosting algorithm, called UNN (Universal Nearest Neighbors), which induces leveraged k-NN, thus generalizing the classic k-NN rule. We redefine the voting rule as a strong classifier that linearly combines predictions from the k closest prototypes. Weak classifiers are learned by UNN so as to minimize a surrogate risk. A major feature of UNN is the ability to learn which prototypes are the most relevant for a given class, thus allowing one for effective data reduction. Experimental results on the synthetic two-class dataset of Ripley show that such a filtering strategy is able to reject "noisy" prototypes. We carried out image categorization experiments on a database containing eight classes of natural scenes. We show that our method outperforms significantly the classic k-NN classification, while enabling significant reduction of the computational cost by means of data filtering.
ISSN: 0920-5691

hal-00481712
https://hal.archives-ouvertes.fr/hal-00481712
DOI : 10.1007/s11263-012-0539-2
ARXIV : 1001.1221

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We performed torsional deformation experiments on pre-hydrated fine-grained olivine aggregates using an innovative experimental assembly to investigate water weakening in mantle rocks at high shear strains. San Carlos olivine powder was cold-pressed and then hot-pressed under hydrous conditions, producing aggregates with average grain sizes of 7 or 15 μm. Deformation experiments were performed in a high-resolution gas-medium apparatus equipped with a torsional actuator, under a confining pressure of 300 MPa, a temperature of 1200 °C, and constant shear strain rates ranging from 8 × 10−5 to 1.4 × 10−4 s−1. Maximum shear stresses range from 150 to 195 MPa. These values are 30% lower relative to those determined in previous torsion experiments on dry, fined-grained dunites under similar conditions. Textures and microstructures of the starting and deformed specimens were characterized by scanning and transmission electron microscopy. All deformed aggregates exhibit a shape-preferred orientation marking a foliation and lineation, as well as a reduction in mean grain size from 15 μm down to 3-4 μm due to dynamic recrystallization. Olivine crystallographic fabrics developed rapidly (γ < 0.1), but their strength, characterized by the J-index, is low compared to naturally deformed peridotites or to polycrystalline olivine deformed at similar finite shear strains under dry conditions. The crystallographic fabrics are consistent with deformation by a dislocation accommodated creep mechanism with activation of multiple {0 k l}[1 0 0] systems, among which the (0 1 0)[1 0 0] slip system is dominant, and minor participation of the (0 1 0)[0 0 1] slip system. Transmission electron microscopy confirmed the occurrence of dislocations with [1 0 0] and [0 0 1] Burgers vectors in most grains. Analysis of unpolarized infrared spectra indicates that hydrogen concentration in the olivine lattice is below the saturation level of 18 ppm wt H2O, which is similar to those typically observed in spinel-bearing peridotite xenoliths, and also provide evidence for water-rich inter-granular material trapped in pores and grain boundaries. Seismic properties computed from the CPO observations correspond to those most commonly observed in naturally deformed mantle peridotites with fast P-wave propagation and S-wave polarization subparallel to the shear direction. These torsion experiments on fine-grained olivine polycrystals under hydrous conditions indicate that water weakening under lithospheric conditions is linked to various defects with hydrogen in the olivine structure, as well as with water-derived species in grain boundaries or pores.
ISSN: 0031-9201

hal-00745170
https://hal.archives-ouvertes.fr/hal-00745170
DOI : 10.1016/j.pepi.2012.05.001

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Blake excursion was among the first recognized with directional and intensity behavior known mainly from marine sediment and Chinese loess. Age estimates for the directional shifts in sediments are poorly constrained to about 118−100 ka, i.e., at the marine isotope stage (MIS) 5e/5d boundary. Moreover, sediments at Lac du Bouchet maar, France and along the Portuguese margin reveal what may be a "post-Blake" excursion at about 105−95 ka. The excursional directions are associated with a prominent paleointensity minimum between about 125 and 95 ka in global stacked records. Lava flow recordings of the Blake excursion(s) have, however, been questionable because precise ages required for correlation with these sediment records are lacking. To establish new, independent records of the Blake excursion, and link these into a larger Quaternary GITS, we have undertaken 40Ar/39Ar incremental heating and unspiked K-Ar experiments on groundmass from the transitionally magnetized Inzolfato flow on Lipari Island. We also obtained 40Ar/39Ar incremental heating results for a lava flow on Amsterdam Island originally thought to record the Mono Lake excursion and from the transitionally magnetized El Calderon basalt flow, New Mexico that was K-Ar dated by Champion et al. (1988) at 128 ± 66 ka. Unspiked K-Ar ages of four samples from the Inzolfato flow are 102.5 ± 4.7, 101.3 ± 3.3, 97.1 ± 2.6, and 96.8 ± 3.1 ka and thus indistinguishable from one another. 40Ar/39Ar results are more complex, with three samples yielding discordant age spectra. Based on incremental heating data obtained in both the UW-Madison and Gif-sur-Yvette 40Ar/39Ar laboratories, a fourth sample yields six concordant age plateaus and a weighted mean age of 105.2 ± 1.4 ka that we take as the best estimate of time since the flow erupted. Five 40Ar/39Ar incremental heating experiments on the Amsterdam Island lava yield a plateau age of 120 ± 12 ka, whereas ages from two sites in the Calderon flow are 112 ± 23 and 101 ± 14 ka, together giving a weighted mean of 104 ± 12 ka. The age of 120 ± 12 ka from Amsterdam Island, though imprecise, correlates with the Blake excursion. In contrast, the 104-105 ka age obtained from both Lipari and New Mexico indicates that these lavas record a younger period of dynamo instability, most probably associated with the post-Blake excursion. These radioisotopic ages are consistent with the astronomical ages of two paleointensity minima in the PISO-1500 global stack. Our findings indicate that the Blake and post-Blake excursions are both global features of past geodynamo behavior and support the hypothesis that Brunhes chron excursions are temporally clustered into two groups of at least a half-dozen each spanning over 220 to 30 ka and 720 to 520 ka.
ISSN: 1871-1014

hal-01054336
https://hal.archives-ouvertes.fr/hal-01054336
DOI : 10.1016/j.quageo.2012.12.005

Éditeur(s) : HAL CCSD
Résumé : International audience
We propose in this article a color image segmentation technique based on an optimization of the Mean Shift method. It consists in classifying clusters of data points of a digital image, it does not require any preliminary designation of the number of classes and of their centers. The Mean Shift method applied to a digital color image creates a new image made up of aggregates of points belonging to a finished number of color classes. The complexity of this method based on a global approach of the image is in O(NxN), N being the number of pixels of the image. Our idea consists in applying a change of scale to the image to be segmented, to reduce the quantity of information and, in using a median filter to decrease the number of colors to minimize the complexity of the latter. The comparative study which we present shows that the optimization which we proposed gives better, reliable results than the classic use of the Mean Shift method.
Complex, Intelligent and Software Intensive Systems, International Conference
Cracovie, Poland

hal-00508427
https://hal.archives-ouvertes.fr/hal-00508427
DOI : 10.1109/CISIS.2010.62

Éditeur(s) : HAL CCSD Society for Range Management
Résumé : Grasslands and agroecosystems occupy one-third of the terrestrial area, but their contribution to the global carbon cycle remains uncertain. We used a set of 316 site-years of CO(2) exchange measurements to quantify gross primary productivity, respiration, and light-response parameters of grasslands, shrublands/savanna, wetlands, and cropland ecosystems worldwide. We analyzed data from 72 global flux-tower sites partitioned into gross photosynthesis and ecosystem respiration with the use of the light-response method (Gilmanov, T. G., D. A. Johnson, and N. Z. Saliendra. 2003. Growing season CO(2) fluxes in a sagebrushsteppe ecosystem in Idaho: Bowen ratio/energy balance measurements and modeling. Basic and Applied Ecology 4:167-183) from the RANGEFLUX and WORLDGRASSAGRIFLUX data sets supplemented by 46 sites from the FLUXNET La Thuile data set partitioned with the use of the temperature-response method (Reichstein, M., E. Falge, D. Baldocchi, D. Papale, R. Valentini, M. Aubinet, P. Berbigier, C. Bernhofer, N. Buchmann, M. Falk, T. Gilmanov, A. Granier, T. Grunwald, K. Havrankova, D. Janous, A. Knohl, T. Laurela, A. Lohila, D. Loustau, G. Matteucci, T. Meyers, F. Miglietta, J.M. Ourcival, D. Perrin, J. Pumpanen, S. Rambal, E. Rotenberg, M. Sanz, J. Tenhunen, G. Seufert, F. Vaccari, T. Vesala, and D. Yakir. 2005. On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm. Global Change Biology 11: 1.424-1439). Maximum values of the quantum yield (alpha = 75 mmol.mol(-1)), photosynthetic capacity (A(max) = 3.4 mg CO(2) . m(-2).s-1), gross photosynthesis (P(g,max) = 1.16 g CO(2) . m(-2).d(-1)), and ecological light-use efficiency (epsilon(ecol) = 59 mmol . mol(-1)) of managed grasslands and high-production croplands exceeded those of most forest ecosystems, indicating the potential of nonforest ecosystems for uptake of atmospheric CO(2). Maximum values of gross primary production (8 600 g CO(2) . m(-2).yr(-1)), total ecosystem respiration (7 900 g CO(2) . m(-2).yr(-1)), and net CO(2) exchange (2 400 g CO(2) . m(-2).yr(-1)) were observed for intensively managed grasslands and high-yield crops, and are comparable to or higher than those for forest ecosystems, excluding some tropical forests. On average, 80% of the nonforest sites were apparent sinks for atmospheric CO(2), with mean net uptake of 700 g CO(2) . m(-2).yr(-1) for intensive grasslands and 933 g CO(2) . m(-2).d(-1) for croplands. However, part of these apparent sinks is accumulated in crops and forage, which are carbon pools that are harvested, transported, and decomposed off site. Therefore, although agricultural fields may be predominantly sinks for atmospheric CO(2), this does not imply that they are necessarily increasing their carbon stock.
ISSN: 1550-7424

hal-01190754
https://hal.archives-ouvertes.fr/hal-01190754
DOI : 10.2111/rem-d-09-00072.1
PRODINRA : 214043

Éditeur(s) : Elsevier
Résumé : The purpose of this study was to determine whether diploid and triploid sea bass differed in terms of main haematological and physiological characteristics. Diploid and triploid fish were produced by sub-optimal pressure treatments and held in communal environments under standard rearing conditions. Total red blood cell count (RBCC), haemoglobin concentration (Hb), hematocrit (Hct), mean cell volume (MCV), mean cellular haemoglobin content (MCH), mean cell haemoglobin concentration (MCHC), plasma metabolites, osmotic pressure, gill Na+/K+-ATPase activity, electrolytes, cortisol, and 3,5,3'-triiodo-L-thyronine (T-3) were measured and compared. Triploidisation in sea bass led to an increase in erythrocyte size (32% in cytoplasm surface area, and 50% in nucleus) and a decrease in erythrocyte number (similar to34%). Haemoglobin and basal plasma cortisol levels were significantly lower in triploid sea bass than in diploids. There were also differences between ploidies in the plasma concentrations of some electrolytes, with triploids showing lower concentrations of K, Fe, Zn, S, and Cu than their diploid counterparts.
Aquaculture (0044-8486) (Elsevier), 2005-02 , Vol. 244 , N. 1-4 , P. 359-367

Droits : 2004 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/2005/publication-508.pdf
DOI:10.1016/j.aquaculture.2004.11.028
http://archimer.ifremer.fr/doc/00000/508/

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : Vertical displacements on the SW-NE T (e) over capt fault (Eastern Pyrenees Axial Zone, France), which separates the Variscan Canigou-Caranca and Mont-Louis massifs, were constrained using a thermochronologic multi-method approach. Ar-40/Ar-39 data from the granitic Mont-Louis massif record its Variscan cooling history and reveal no ages younger than Early Cretaceous, while the Canigou-Caranca gneiss massif records systematically younger Ar-40/Ar-39 ages. These younger Ar-40/Ar-39 ages in the Canigou-Caranca gneiss massif are the result of partial to total rejuvenation of argon isotopic systems related to a thermal flow coeval with the Cretaceous HT-BP metamorphism in the North Pyrenean Zone. Only the deepest rocks from the Canigou-Caranca suffered this extensive Mid-Cretaceous thermal overprint probably due to differential burial around 4 km at that time. The post Mid-Cretaceous vertical displacements along the T (e) over capt fault are recorded by "low" temperature thermochronology using K-feldspar Ar-40/Ar-39, zircon and apatite fission track and (U-Th)/He datings. The Mont-Louis granite samples experienced a long period of protracted cooling reflecting a lack of thermo-tectonic activity in this area from Late Palaeozoic to Early Cenozoic, followed by cooling from 55-60 Ma to Late Eocene at a mean rate of 15-20 degrees C/Ma in the final stage. This cooling stage corresponds to T (e) over capt fault reactivation with a reversed component, promoting exhumation of the Mont-Louis roof zone contemporaneously with the south-vergent Pyrenean thrusting. In the Canigou-Caranca massif, the main cooling event occurred from 32 to 18 Ma at a maximum rate of 30 degrees C/Ma during Early Oligocene followed by a more moderate rate of 3 degrees C/Ma from Late Oligocene to Early Burdigalian, coeval with the normal reactivation of the T (e) over capt fault in brittle conditions that accommodated the final exhumation of the massif during the opening of the Gulf of Lion.
ISSN: 1437-3254

hal-00411442
https://hal.archives-ouvertes.fr/hal-00411442
DOI : 10.1007/s00531-007-0179-x

Éditeur(s) : HAL CCSD
Résumé : International audience
Objective To guide nosology and classification of patients with eosinophilic granulomatosis with polyangiitis (EGPA) based on phenotype and presence or absence of ANCA. Methods Organ manifestations and ANCA status were retrospectively analyzed based on the presence or not of predefined definite vasculitis features or surrogates of vasculitis in patients asthma, eosinophilia, and at least one systemic organ manifestation attributable to systemic disease. Results The study population included 157 patients (mean age 49.4 ± 14.1), with a follow-up of 7.4 ± 6.4 years. Patients with ANCA (31%) more frequently had weight loss, myalgias, arthralgias, biopsy-proven vasculitis, glomerulonephritis on biopsy, hematuria, leukocytoclastic capillaritis and/or eosinophilic infiltration of arterial wall on biopsy, and other renal disease. A total of 41% of patients had definite vasculitis manifestations (37%) or strong surrogates of vasculitis (4%), of whom only 53% had ANCA. Mononeuritis multiplex was associated with systemic vasculitis (p = 0.005) and with the presence of ANCA (p < 0.001). Overall, 59% of patients had polyangiitis as defined by definite vasculitis, strong surrogate of vasculitis, mononeuritis multiplex, and/or ANCA with at least one systemic manifestation other than ENT or respiratory. Patients with polyangiitis had more systemic manifestations including arthralgias (p = 0.02) and renal disease (p = 0.024), had higher peripheral eosinophilia (p = 0.027), and a trend towards less myocarditis (p = 0.057). Using predefined criteria of vasculitis and surrogates of vasculitis, ANCA alone were found to be insufficient to categorise patients with vasculitis features. Conclusion We suggest a revised nomenclature and definition for EGPA and a new proposed entity referred to as hypereosinophilic asthma with systemic (non vasculitic) manifestations. © 2016 Elsevier B.V.
Autoimmunity Reviews

hal-01467544
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01467544
DOI : 10.1016/j.autrev.2016.09.018
PUBMED : 27671089

Éditeur(s) : EDP Sciences
Résumé : Daily growth increments measured in the otolith of Thunnus atlanticus were used to estimate the age and growth of individuals. which were sampled from an artisanal fishery operating around fish aggregating devices (FADs) moored off Martinique Island. In this study, 76 otoliths were analysed for fish ranging from 20 to 68 cm fork lengths (FL). The fish were caught using trolling lines at depths ranging from 0 to 10 m. Counts were made, under a light microscope, on the external part of the transverse section of the sagittae, from the primordium to the ventral edge. The mean coefficient of variation of the age reading was 2.4%. To validate readings, the number of increments for 11 individuals was counted using both optic and scanning electron microscopes. The calculated relationship between readings of both methods was found to be linear, with a slope of 1.03 and R-2 = 0.99. Frequency of growth increment formation could not be validated. Growth rates derived from otolith readings were, however, compared to those obtained using a modal progression analysis, which was performed on the length-frequency distributions of the landings over a period of two months. The corroboration between the growth rates was good. One increment was assumed to represent one day. The parameters of the von Bertalanffy growth curve for both sexes were L-infinity = 71.4 cm FL, k = 0.002 day(-1) and tau(0) = -80 days. According to our results, there is no evidence that Martinican moored FADs act as ecological traps for blackfin tuna. Instead, young blackfin tuna probably leave the vicinity of Martinican moored FADs to undergo a trophic migration at 7 to 8 month-old, and then come back about 8 months later to breed in the Lesser Antilles area.
Les microstructures présentes dans les otolithes de Thunnus atlanticus ont été utilisées pour estimer l'âge et la croissance des thons capturés par la pêcherie artisanale exploitant les dispositifs de concentrations de poissons (DCP) mouillés autour de la Martinique. Des thons de 20 à 68 cm de longueur à la fourche (LF) ont été capturés à la ligne de traîne de surface entre 0 et 10 m de profondeur. Les stries d'accroissement ont été comptées sur 76 otolithes en microscopie optique sur la partie externe des coupes transversales de la sagitta, du nucléus jusqu'à l'extrémité verticale de la coupe (coefficient de variations 2,4 %). Afin de vérifier qu'il n'y avait pas de sous-estimation du nombre de stries, nous avons effectué un comptage, en microscopie électronique à balayage, pour 11 individus. La relation établie entre ces deux méthodes de comptage est linéaire avec un pente égale à 1,03 et R2 = 0,99. La vitesse de croissance issue de l'analyse des otolithes a été comparée à celle estimée à partir de l'analyse en progression modale des distributions en fréquence de taille des débarquements sur une période de 2 mois. La corroboration entre les deux méthodes était bonne. Nous avons supposé que la formation des stries de croissance suivait un rythme journalier. Les paramètres de l'équation de croissance de von Bertalanffy pour les 2 sexes confondus sont: L-infinity = 71.4 cm FL, k = 0.002 day(-1) and tau(0) = -80 days. Les résultats de cette étude n'indiquent pas que les DCP ancrés martiniquais puissent agir comme des pièges écologiques pour les thons noirs. Les jeunes thons noirs semblent au contraire quitter la proximité des DCP et entreprendre une migration trophique lorsqu'ils atteignent 7 à 8 mois. Ils ne reviendraient ensuite dans la zone des Petites Antilles qu'environ 8 mois plus tard, manifestement pour se reproduire.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2004 , Vol. 17 , N. 1 , P. 13-18

Droits : EDP Sciences, IFREMER, IRD 2004
http://archimer.ifremer.fr/doc/2004/publication-396.pdf
DOI:10.1051/alr:2004009
http://archimer.ifremer.fr/doc/00000/396/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Heletz sandstone (Israel) reactivity is studied by means of CO2-rich brine percolation experiments and modeling. Experiments are performed at in situ temperature and pressure conditions with two distinctly different injection flow rates and for two different brine compositions: the genuine Heletz brine and a similar brine but in equilibrium with gypsum. The Heletz sandstone is composed of quartz, dolomite, ankerite, K-feldspar, clay minerals and minor amounts of gypsum and pyrite. The main reaction is the dissolution of the carbonates which is fastest for the highest flow rate injection and for the genuine Heletz brine. Permeability increases during the five percolation experiments, regardless of flow rate and brine type. This increase in permeability is associated to a decrease in porosity during the gypsum-equilibrated brine experiments due to gypsum precipitation. The precipitation of secondary minerals (kaolinite, muscovite and smectite) is mainly controlled by the dissolution of K-feldspar and largest at low flow rate injection, indicating that these precipitation processes are diffusion-controlled and localized in immobile zones where favorable chemical micro-environments exist. These processes are quantified by means of a reactive transport model. These results indicated that the CO2 injection at the Heletz site should trigger both permeability increase in interface between brine and CO2, which may extend over a large extension and where mixing processes are very active, especially near the well under intermittent injection conditions.
ISSN: 1750-5836

hal-01356329
https://hal.archives-ouvertes.fr/hal-01356329
DOI : 10.1016/j.ijggc.2015.10.023

Éditeur(s) : HAL CCSD
Résumé : International audience
Along with the words of F. Cros " the concept of innovation has nowadays an increased status in the training world", we will attempt qualify the notion of innovation itself in pedagogics Let us start by remindings of this concept in litterature. We will first shortly deal with the meaning of our actions in an "innovating" pedagogy. Then we will progressively go to the "latourian" position by calling to mind some of the key features of his thinking. We willpartially go into the innovation by touching upon a perspective through some of the works of B. Latour and more specifically "The Existence Modes" Broadly speaking, we need to reflect upon the role itself of the researcher in his approach of the study object. We will introduce a theoretical framework that seems to include B. Latour's remarks. According to Karl Marx : "the windmill belongs to the feudal society, whereas the steam mill belongs to the middleclass society" To paraphrase K. Marx, we may ponder to which type of society (of innovation) our 2.0 Windmills correspond?
A l’instar des propos tenus par F. Cros1”la notion d’innovation est aujourd’hui très valorisée dans le monde de la formation”, nous tenterons de comprendre certains mécanismes mis en oeuvre et nuancerons la notion même d’innovation en pédagogie. Nous débuterons par un rappel sur cette notion dans la littérature. Nous mènerons une courte réflexion sur le sens de nos actions en pédagogie dite « innovante ». Puis nous nous glisserons petit à petit dans la posture « latourienne » en évoquant quelques points clés de sa pensée. C’est partiellement que nous aborderons l’innovation par une mise en perspective « effleurée » au travers de certains travaux de B. Latour et plus particulièrement « Les Modes d’Existence ».De manière plus large, il s’agit de mener une réflexion sur le rôle même du chercheur dans son approche de l’objet de recherche. Nous résenterons un cadre théorique qui semble inclure les propos de B. Latour. Selon K. Marx2 : « Au moulin à eau correspond la société féodale, au moulin à vapeur, la société bourgeoise ». Pour paraphraser K. Marx, on peut se demander à quel type de société (de l’innovation) correspondent nos éoliennes 2.0. ?
Les écosystèmes numériques et la démocratisation informationnelle : Intelligence collective, Développement durable, Interculturalité, Transfert de connaissances
Schoelcher, France

hal-01258318
https://hal.univ-antilles.fr/hal-01258318
https://hal.univ-antilles.fr/hal-01258318/document
https://hal.univ-antilles.fr/hal-01258318/file/Armand%20Lietart%20%281%29.pdf

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Estimations of zenith total delays (ZTD) were obtained during postprocessing of a high-resolution (2.4 km) nonhydrostatic atmospheric model (Méso-NH). These estimations were used to determine their sensitivity with respect to formulations of atmospheric refractivity, the approximation of zenith hydrostatic delays (ZHD) deduced from ground pressure, and the contributions of hydrometeors. The factor k for the conversion of zenith wet delay (ZWD) to integrated water vapor (IWV) was examined. Méso-NH is applied here to the extreme flash flood event of 8–9 September 2002 in southeastern France. The use of the hydrostatic formulation (to infer ZHD) leads to an overestimation of up to 18 mm with respect to the vertical integration of refractivity. Delay contributions of hydrometeors simulated by the high-resolution model reached more than 70 mm (%11 kg/m 2 IWV) in the heart of the convective cells in the case of the extreme flood event. The mean variations of IWV due to the use of different conversion factors (k used to transform ZWD to IWV) are evaluated to be less than 0.3 kg/m 2. This is less than the mean underestimation of IWV by 0.6 kg/m 2 relative to the GPS-like evaluation of IWV using the hydrostatic formulation and the ground temperature. In this study we also use GPS ZTD observations to validate three different numerical simulations of this extreme flood event. The simulation with the best fit to the GPS observations is also in best agreement with the surface rainfall measurements.
ISSN: 2169-897X

hal-01417608
https://hal.archives-ouvertes.fr/hal-01417608
https://hal.archives-ouvertes.fr/hal-01417608/document
https://hal.archives-ouvertes.fr/hal-01417608/file/Brenot_JGR_2006.pdf
DOI : 10.1029/2004JD005726

Éditeur(s) : HAL CCSD
Résumé : International audience
This paper deals with texture classification using a multifractal approach. More precisely we analyse the singularity/regularity exponent that compose the textures because they theoretically carry most of the information. The analysis is made using the Legendre spectrum. Then a parameter vector is computed to describe this spectrum in order to classify the textures with an unsupervised k-means classifier. The resulting algorithm is evaluated against a classification directly based on the textures.
CAS Proceedings
GOSIER, France

hal-00634750
https://hal.archives-ouvertes.fr/hal-00634750

Éditeur(s) : HAL CCSD American Society of Tropical Medicine and Hygiene
Résumé : International audience
Anti-leishmaniasis drug resistance is a common problem worldwide. The aim of this study was to inventory the general in vitro level of sensitivity of Leishmania isolates circulating in French Guiana and to highlight potential in vitro pentamidine-resistant isolates. This sensitivity study was conducted on 36 patient-promastigote isolates for seven drugs (amphotericin B, azithromycin, fluconazole, meglumine antimoniate, miltefosine, paromomycin, and pentamidine) using the Cell Counting Kit-8 viability test. The IC50 values obtained were heterogeneous. One isolate exhibited high IC50 values for almost all drugs tested. Pentamidine, which is the first-line treatment in French Guiana, showed efficacy at very low doses (mean of 0.0038 μg/mL). The concordance of the in vitro pentamidine results with the patients' clinical outcomes was 94% (K = 0.82).
ISSN: 0002-9637

inserm-01481512
http://www.hal.inserm.fr/inserm-01481512
http://www.hal.inserm.fr/inserm-01481512/document
http://www.hal.inserm.fr/inserm-01481512/file/2017%2C%20Ginouves%20-%20In%20vitro%20sensitivity%20of%20cutaneous%20leishmania.pdf
DOI : 10.4269/ajtmh.16-0373

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Microstructures, U-Pb SHRIMP zircon ages and temperature estimates were used to constrain the fabric evolution and timing of mylonitisation in the Patos shear zone (NE Brazil). Melt-bearing HT-mylonitic orthogneiss displays solid-state fabrics with coarse quartz ribbons and sutured grain boundaries. K-feldspar is often fractured and shows peripheral myrmekite. The textures typically become magmatic at the contacts with the Espinho Branco anatexite. Zircon crystals from two samples of the leucosome show Paleoproterozoic (ca. 2.2 Ga) inherited cores that are enveloped by recrystallised Neoproterozoic rims. These zircon grains define a discordia with lower intercept ages of 558 and 562 Ma but with large analytical errors. A leucogranite with transitional contacts with host diatexites provides a well-constrained zircon mean age of 566 ± 6 Ma (n = 15, 95% conf.), which is considered the best estimate for the peak metamorphic conditions. The transition from HT-mylonites to fine-grained mylonites and ultramylonites is marked by a progressive grain size reduction assisted by recrystallisation. Quartz crystallographic fabrics display [0 0 0 1] concentrations between Z and Y. K-feldspar and plagioclase fabrics record the activity of the (0 1 0)[0 0 1] and (0 1 0)[1 0 0] slip systems and, in the lower-temperature tectonites, the (1 0 0)[0 1 0] slip system. These results suggest a diachronic evolution in which an initial HT northern domain was deformed by intracrystalline slip and melt-assisted granular flow, followed by medium- to low-temperature solid-state creep in the southern shear zone domain. The mylonites therefore record the rheological heterogeneities responsible for the formation of a late continental shear zone that nucleated under partially molten conditions and was later reactivated through melt-absent strain localization following exhumation.
ISSN: 0301-9268

hal-01053497
https://hal.archives-ouvertes.fr/hal-01053497
DOI : 10.1016/j.precamres.2013.12.020

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Questions: Several studies have described aggregated spatial patterns in tropical tree species. This study investigates aggregate dynamics of Vouacapoua americana (Aublet), a climax species whose spatial pattern is not simply related to light and soil conditions or to its short seed dispersal range. Location: Two rain forest sites: Nouragues and Paracou, in the Guiana Shield. Methods: We described the spatial pattern of tree locations and spatial autocorrelation of tree diameters, using statistics derived from Ripley's K. We particularly used methods to define analysis subplots according to local density or local mean diameter. We investigated relationships between spatial distributions of adults and saplings. Results: At both sites, populations of Vouacapoua demonstrated several nested levels of aggregation. Tree diameters were spatially autocorrelated, revealing the existence of clusters with similar diameters. In the largest aggregates, tree diameters declined from the centre to the edge. Regeneration was aggregated and occurred mainly at cluster edges and around rare isolated trees, and sapling densities and basal area of adults were negatively correlated. We show that long-distance dispersal events are rare. Conclusions: Environmental factors and seed dispersal only explain part of the observed spatial patterns. We provide two main hypotheses about Vouacapoua population dynamics. First, the lack of regeneration in aggregate centres results in the ageing of existing aggregates. We suggest that this lack of recruitment close to mature trees is due to a Janzen-Connell effect. However, aggregates can continue to grow along colonization fronts. Second, long-distance dispersal events allow the formation of new clusters and play a crucial role in the colonization process. We investigate aggregate dynamics of Vouacapoua americana (Aublet) whose spatial pattern is not simply related to environmental conditions or to its seed dispersal. Regeneration does not occur in centers of aggregate of adults. We suggest that rare long-distance dispersal events and density-dependence predation of seeds and seedlings play a crucial role in formation of new clusters and structuration of larger aggregates.
ISSN: 1100-9233

hal-01502642
https://hal-agroparistech.archives-ouvertes.fr/hal-01502642
DOI : 10.1111/jvs.12080

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
We report trace element analyses by laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) of metal grains from nine different CR chondrites, distinguishing grains from chondrule interior ("interior grains"), chondrule surficial shells ("margin grains"), and the matrix ("isolated grains"). Save for a few anomalous grains, Ninormalized trace element patterns are similar for all three petrographic settings, with largely unfractionated refractory siderophile elements and depleted volatile Au, Cu, Ag, S. All three types of grains are interpreted to derive from a common precursor approximated by the least-melted, fine-grained objects in CR chondrites. This also excludes recondensation of metal vapor as the origin of the bulk of margin grains. The metal precursors were presumably formed by incomplete condensation, with evidence for high-temperature isolation of refractory platinum-group-element (PGE)-rich condensates before mixing with lower temperature PGE-depleted condensates. The rounded shape of the Ni-rich, interior grains shows that they were molten and that they equilibrated with silicates upon slow cooling (1-100 K h 1), largely by oxidation/evaporation of Fe, hence their high Pd content, for example. We propose that Ni-poorer, amoeboid margin grains, often included in the pyroxene-rich periphery common to type I chondrules, result from less intense processing of a rim accreted onto the chondrule subsequent to the melting event recorded by the interior grains. This means either that there were two separate heating events, which formed olivine/ interior grains and pyroxene/margin grains, respectively, between which dust was accreted around the chondrule, or that there was a single high-temperature event, of which the chondrule margin records a late "quenching phase," in which case dust accreted onto chondrules while they were molten. In the latter case, high dust concentrations in the chondrule-forming region (at least three orders of magnitude above minimum mass solar nebula models) are indicated.
ISSN: 1086-9379

hal-01003975
https://hal.archives-ouvertes.fr/hal-01003975
DOI : 10.1111/maps.12212