Éditeur(s) : HAL CCSD PeerJ
Résumé : International audience
Understanding the role of predators in food webs can be challenging in highly diverse predator/prey systems composed of small cryptic species. DNA based dietary analysis can supplement predator removal experiments and provide high resolution for prey identification. Here we use a metabarcoding approach to provide initial insights into the diet and functional role of coral-dwelling predatory fish feeding on small invertebrates. Fish were collected in Moorea (French Polynesia) where the BIOCODE project has generated DNA barcodes for numerous coral associated invertebrate species. Pyrosequencing data revealed a total of 292 Operational Taxonomic Units (OTU) in the gut contents of the arc-eye hawkfish (Paracirrhites arcatus), the flame hawkfish (Neocirrhites armatus) and the coral croucher (Caracanthus maculatus). One hundred forty-nine (51%) of them had species-level matches in reference libraries (>98% similarity) while 76 additional OTUs (26%) could be identified to higher taxonomic levels. Decapods that have a mutualistic relationship with Pocillopora and are typically dominant among coral branches, represent a minor contribution of the predators' diets. Instead, predators mainly consumed transient species including pelagic taxa such as copepods, chaetognaths and siphonophores suggesting non random feeding behavior. We also identified prey species known to have direct negative interactions with stony corals, such as Hapalocarcinus sp, a gall crab considered a coral parasite, as well as species of vermetid snails known for their deleterious effects on coral growth. Pocillopora DNA accounted for 20.8% and 20.1% of total number of sequences in the guts of the flame hawkfish and coral croucher but it was not detected in the guts of the arc-eye hawkfish. Comparison of diets among the three fishes demonstrates remarkable partitioning with nearly 80% of prey items consumed by only one predator. Overall, the taxonomic resolution provided by the metabarcoding approach highlights a highly complex interaction web and demonstrates that levels of trophic partitioning among coral reef fishes have likely been underestimated. Therefore, we strongly encourage further empirical approaches to dietary studies prior to making assumptions of trophic equivalency in food web reconstruction. How to cite this article Leray et al. (2015), Metabarcoding dietary analysis of coral dwelling predatory fish demonstrates the minor contribution of coral mutualists to their highly partitioned, generalist diet. PeerJ 3:e1047
ISSN: 2167-8359

Droits : http://creativecommons.org/licenses/by/
hal-01174184
https://hal-univ-perp.archives-ouvertes.fr/hal-01174184
https://hal-univ-perp.archives-ouvertes.fr/hal-01174184/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01174184/file/peerj-1047.pdf
DOI : 10.7717/peerj.1047

Éditeur(s) : Inter-research
Résumé : Marine protected areas (MPAs) have the potential to enhance the long-term sustainability of coastal resources, and the artisanal fisheries which depend on them. However, recreational fisheries, which are increasing their impacts on coastal resources worldwide, may reduce the benefits that MPAs provide to declining artisanal fisheries. Here we used the Bonifacio Straits Natural Reserve (BSNR) Corsica as a study case to simulate the combined effects on coastal resources of artisanal and recreational fishing efforts. The BSNR ecosystem was modelled using mass-balance modelling of trophic interactions. This model was compared to another built on a non-protected area from the same region. We aggregated fishing fleets into artisanal and recreational categories, and we simulated various combinations of fishing effort over a 20 yr dynamic simulation using Ecosim. We showed that fishing activities have an additional top-down effect on the food web and that they decrease the targeted group's biomass, such as piscivorous species. We found, for some trophic groups, non-trivial patterns of biomass variation through trophic cascades. Our trophic approach revealed that some groups may suffer a biomass decrease when MPAs are set or enforced, due to the combined effect of artisanal and recreational fisheries. Overall, our results illustrate the value of modelling to manage MPAs, as a complementary tool to surveys. Models provide the opportunity to anticipate the potential consequences, at the ecosystem level, of socio-political decisions that aim to sustain coastal resources while managing artisanal and recreational fisheries.
Marine Ecology-progress Series (0171-8630) (Inter-research), 2010-08 , Vol. 412 , P. 207-221

Droits : Inter-Research 2010
http://archimer.ifremer.fr/doc/00013/12436/9246.pdf
http://archimer.ifremer.fr/doc/00013/12436/9247.pdf
DOI:10.3354/meps08679
http://archimer.ifremer.fr/doc/00013/12436/

Éditeur(s) : HAL CCSD Springer
Résumé : International audience
The aim of this chapter is to provide a general overview of the main ecological aspects of Anthozoan-Symbiodinium mutualisms in the Mediterranean Sea. There are reports of at least twelve species of symbiotic anthozans in the basin. These anthozoans establish symbiotic relations with Symbiodinium Temperate A and B2 (Symbiodinium psygmophilum), corresponding to the only two species of Symbiodinium described in the region. A synthesis of the trophic and biochemical aspects of the interaction between Symbiodinum and their cnidarian hosts is given to contribute to the understanding of the mechanisms that maintain this special association. Finally, current knowledge about the ecological importance of this interaction in engineering species is examined. This review is framed to highlight the ecological importance of this symbiotic relationship in ecosystem construction and maintenance on an enclosed, temperate marine basin.
The Cnidaria, Past, Present and Future

ISBN : 978-3-319-31303-0
hal-01546929
http://hal.upmc.fr/hal-01546929
DOI : 10.1007/978-3-319-31305-4_24

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Coral reefs are increasingly being altered by a myriad of anthropogenic activities and natural disturbances. Long-term studies offer unique opportunities to understand how multiple and recurrent disturbances can influence coral reef resilience and long-term dynamics. While the long-term dynamics of coral assemblages have been extensively documented, the long-term dynamics of coral reef fish assemblages have received less attention. Here, we describe the changes in fish assemblages on Tiahura reef, Moorea, from 1979 to 2011. During this 33-yr period, Tiahura was exposed to multiple disturbances (crown-of-thorns seastar outbreaks and cyclones) that caused recurrent declines and recoveries of coral cover and changes in the dominant coral genera. These shifts in coral composition were associated with long-term cascading effects on fish assemblages. The composition and trophic structure of fish assemblages continuously shifted without returning to their initial composition, whereas fish species richness remained stable, albeit with a small increase over time. We detected nonlinear responses of fish density when corals were most degraded. When coral cover dropped below 10 % following a severe crown-of-thorns sea star outbreak, the density of most fish trophic groups sharply decreased. Our study shows that historical contingency may potentially be an important but largely underestimated factor explaining the contemporary structure of reef fish assemblages and suggests that temporal stability in their structure and function should not necessarily be the target of management strategies that aim at increasing or maintaining coral reef resilience.
ISSN: 0722-4028

hal-01282725
https://hal-univ-perp.archives-ouvertes.fr/hal-01282725
DOI : 10.1007/s00338-015-1371-2

Éditeur(s) : Pergamon-elsevier Science Ltd
Résumé : Metazooplankton abundance, biomass (<80 mu m, 200-500 mu m and >500 mu m) and community structure in the Ahe atoll were studied together with their relationships with environmental factors (temperature, salinity, wind) and trophic factors (phytoplankton, bacteria, heterotrophic nanoflagellates (HNF) and ciliates) during three periods in 2008-2009. Meroplankton, mainly bivalve and gastropod larvae, was dominant. Holoplankton was dominated by copepods, the main species being Oithona spp., Paracalanus parvus, Clausocalanus spp., Corycaeus spp., Acartia fossae and Undinula vulgaris. The results suggest a clear wind influence on the structure and horizontal distribution of the zooplankton communities. The metazooplankton appeared to be controlled mainly by food resources, suggesting a bottom-up control. The low nanophytoplankton biomass in contrast to the high abundance of picophytoplankton, HNF and nano-particle grazers (mainly Oithona spp., Paracalanus and bivalve larvae) highlighted the importance of the microbial loop in the food web. (C) 2012 Elsevier Ltd. All rights reserved.
Marine Pollution Bulletin (0025-326X) (Pergamon-elsevier Science Ltd), 2012 , Vol. 65 , N. 10-12 , P. 538-548

Droits : 2012 Elsevier Ltd. All rights reserved.
http://archimer.ifremer.fr/doc/00101/21207/19419.pdf
DOI:10.1016/j.marpolbul.2012.01.025
http://archimer.ifremer.fr/doc/00101/21207/

Éditeur(s) : HAL CCSD EDP Sciences
Résumé : International audience
The dynamic model of plant growth GreenLab describes plant architecture and functional growth at the level of individual organs. Structural development is controlled by formal grammars and empirical equations compute the amount of biomass produced by the plant, and its partitioning among the growing organs, such as leaves, stems and fruits. The number of organs initiated at each time step depends on the trophic state of the plant, which is evaluated by the ratio of biomass available in plant to the demand of all the organs. The control of the plant organogenesis by this variable induces oscillations in the simulated plant behaviour. The mathematical framework of the GreenLab model allows to compute the conditions for the generation of oscillations and the value of the period according to the set of parameters. Two case-studies are presented, corresponding to emergence of oscillations associated to fructification and branching. Similar alternating patterns are commonly reported by botanists. In this article, two examples were selected: alternate patterns of fruits in cucumber plants and alternate appearances of branches in Cecropia trees. The model was calibrated from experimental data collected on these plants. It shows that a simple feedback hypothesis of trophic control on plant structure allows the emergence of cyclic patterns corresponding to the observed ones.
ISSN: 0973-5348

hal-00780592
https://hal-ecp.archives-ouvertes.fr/hal-00780592
https://hal-ecp.archives-ouvertes.fr/hal-00780592/document
https://hal-ecp.archives-ouvertes.fr/hal-00780592/file/Mathieu_2012_Published_mmnp201276p47.pdf
DOI : 10.1051/mmnp/20127603

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé : International audience
Abstract Numerous freshwater species are consumed or exploited through artisanal fisheries in the rivers of the islands of Guadeloupe, French West Indies. Autochthonous production of organic matter is limited in these flowing rivers and is mainly represented by scarce filamentous green algae and an abundant epilithic biofilm growing on wet stones in the river bed. Stable isotope analysis was used to quantify the relative importance of biofilm and other riverine allochthonous and autochthonous food sources in the diet of tropical shrimps (Palaemonidae, Atyidae and Xiphocarididae) and fishes (Gobiidae and Eleotridae) consumed by the local people. The epilithic biofilm was exploited by most species, constituted an important source of autochthonous carbon and was an important source of organic matter production at the base of freshwater food webs in Caribbean rivers. Biofilm percentages in the diet reached 32% for molluscs, 85% for atyid shrimps, 29% for xiphocaridid shrimps, 14% for palaemonid shrimps and 13% for fish. Assessment of biofilm in nine rivers showed that blue and red cyanobacteria were quantitatively dominant with a moderately rich diatom flora. These results address the interactions between river biofilm and Caribbean freshwater fauna where trophic links between consumers and their potential resources have poorly been documented.
ISSN: 0969-997X

hal-00744809
https://hal.univ-antilles.fr/hal-00744809
DOI : 10.1111/j.1365-2400.2010.00767.x

Éditeur(s) : Université des Antilles et de la Guyane
Résumé : The need for an integrated approach to fisheries is now widely affirmed, including the FAO, in particular in the context of tropical artisanal fisheries. These small-scale fisheries, often multispecies are very important in terms of production, employment and food security. However these fisheries and the exploited resources are often characterized by a lack of data making difficult their management within an ecosystem approach, and by the ecological and economic system complexities including trophic and technological interactions. This thesis aims to contribute to the development of bioeconomic tools for small tropical fisheries in a sustainable management perspective based on the ecosystem approach. In this perspective, the French Guiana coastal fishery constitutes an interesting case study. The thesis proposes multi-criteria evaluations, complex bioeconomic models and viable management scenarios for this fishery. At first, multivariate statistical analysis suggests a satisfactory overall status of the fishery in terms of sustainability. However, some performance differences are noted within the fishery, particularly at border areas. Also, management improvements are proposed. Then, through bioeconomic modeling, projections of different fishing scenarios show that, in the long-term, the current exploitation level may not be consistent with the future increase of local demand and a loss of biodiversity may occur. A scenario called "co-viability" reconciling ecological, economic and social objectives, with a high probability of achievement is exhibited. Finally, the comparison of optimal behavior in cooperative and non-cooperative conditions, confirms that harvest levels are greater when actors do not cooperate. Furthermore, it is shown that the state of the ecosystem depends on the fishing strategies and the type of interaction between species. Beyond the diagnosis made for the case study, the method is promising in the context of small tropical fisheries, while the co-viability approach allows finding the exploitation conditions under which ecological and socio-economic sustainability are meet, what the conventional fisheries management generally do not allow.
La nécessité d’une approche intégrée des pêches est actuellement largement affirmée, notamment par la FAO, en particulier dans le contexte des pêcheries artisanales tropicales. Ces pêcheries à petites échelles, souvent multi-spécifiques sont très importantes en termes d’emploi et de production, y compris pour la sécurité alimentaire. Néanmoins ces pêcheries et la biodiversité exploitées sont souvent marquées, d’une part, par le manque de données rendant difficile leur gestion dans le cadre d’une approche écosystémique, d’autre part, par la complexité des systèmes écologiques et économiques sous-jacents incluant interactions trophiques et techniques. Cette thèse contribue à la mise au point d’outils bioéconomiques adaptés aux petites pêcheries tropicales dans la perspective d’une gestion durable des pêches fondée sur l’approche écosystémique. Dans cette perspective, la pêcherie côtière en Guyane Française constitue un cas d’étude particulièrement fécond. La thèse propose ainsi des évaluations multi-critères, des modèles bioéconomiques complexes et des scénarios de gestion viable pour cette pêcherie. Dans un premier temps l’analyse statistique multivariée suggère un statut global satisfaisant de la pêcherie en termes de durabilité. Cependant des différences de performance sont notées au sein de la pêcherie, notamment au niveau des zones frontalières. Aussi des améliorations dans le mode de gestion sont proposées. Ensuite, à travers la modélisation bioéconomique, les projections des différents scénarios de pêche montrent qu’à long terme le niveau d’exploitation actuel peut ne pas être en adéquation avec la future augmentation de la demande locale et qu’une perte de biodiversité peut avoir lieu. Un scenario dit de "co-viabilité" conciliant des objectifs à la fois écologique, économique et social, avec une probabilité de réalisation satisfaisante, est mis en exergue. Enfin, la comparaison des comportements optimaux en situation coopératif et non coopératif, montre dans quelle mesure la viabilité est favorisée quand les acteurs coopèrent. Au-delà du diagnostic apporté pour le cas d’étude, la méthode utilisée s’avère prometteuse dans le contexte des petites pêcheries tropicales, tandis que l’approche de co-viabilité permet de trouver les modalités d’exploitation dans le cadre de compromis entre durabilité écologique et socio-économique, ce que les principes de gestion halieutiques traditionnels ne permettent généralement pas.

Droits : 2013 Université des Antilles et de la Guyane
http://archimer.ifremer.fr/doc/00144/25492/23646.pdf
http://archimer.ifremer.fr/doc/00144/25492/

Éditeur(s) : Elsevier
Résumé : The aim of this study was to distinguish between sources of the complex variety of Marennes-Oléron Bay suspended particulate organic matter (SPOM) contributing to the tropho-dynamics of the Marennes-Oléron oyster farming bay. Basic biomarkers (Chl a, C/N and POC/Chl a ratios), carbon and nitrogen stable isotopes from SPOM were analyzed and the microalgae community was characterized. The sampling strategy was bimonthly from March 2002 to December 2003; samples were taken from an intertidal mudflat. Four main sources contributed to the SPOM pool: terrigenous input from rivers, neritic phytoplankton, resuspended microphytobenthos and periodic inputs from intertidal Zostera noltii meadows. Seasonal fluctuations were observed in both years of the study period: (1) SPOM collected in the spring of 2002 (δ13C = −250/00 to −230/00) was mainly composed of fresh estuarine inputs; (2) SPOM from the summer and fall of 2002 and 2003 was predominantly neritic phytoplankton (δ13C = − 220/00 to −190/00); (3) SPOM from the winter of 2002, spring of 2003 and winter of 2003 (δ13C = −21 to −230/00) was composed of a mixture of decayed terrigenous river inputs and pelagic phytoplankton, which was predominantly resuspended microphytobenthos. In the summer of 2003—the warmest summer on record in southern France and Europe—SPOM was particularly enriched for 13C, with δ13C values ranging from −140/00 to −120/00. Pulses in δ13C values, indicative of 13C-enriched decaying materials, extended into the fall. These were attributed to benthic intertidal inputs, including both resuspended microphytobenthos and Z. noltii detritus. Changes in SPOM sources in Marennes-Oléron Bay may lead to differences in the quality of the trophic environment available for reared oysters.
Estuarine, Coastal and Shelf Science (0272-7714) (Elsevier), 2008-07 , Vol. 78 , N. 3 , P. 576-586

Droits : 2008 Elsevier Ltd All rights reserved.
http://archimer.ifremer.fr/doc/2008/publication-4313.pdf
DOI:10.1016/j.ecss.2007.11.001
http://archimer.ifremer.fr/doc/00000/4313/

Éditeur(s) : Gauthier-Villars
Résumé : Four planktonic coastal ecosystems from the western Channel to the southern part of the North Sea have been compared. The characteristics of the south of the North Sea are a very high planktonic biomass with an annual maximum value of 45 mg C m-3 h-1 for primary production, a maximum of 11 mg m-3 for Chlorophyll a and 60 mg C m-3 for zooplanktonic biomass (expressed in term of carbon weight), linked with an oscillating ecosystem. In the western Channel primary production shows an annual maximum value of 8 mg C m-3 h-1, die chlorophyll a, a maximum of 2.5 mg m-3 and zooplanktonic carbon weight of 14 mg C m-3 linked to a greater inertia in the system. Turnover is faster in the north. Trophic efficiency ratios have been calculated and linked to hydrodynamic conditions and currents. The impacts of a thermal perturbation from a nuclear power plant effluent (DT 11-degrees - 15-degrees-C) applied to ecosystems are compared.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1993 , Vol. 16 , N. 5-6 , P. 661-670

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00100/21130/18750.pdf
http://archimer.ifremer.fr/doc/00100/21130/

Éditeur(s) : HAL CCSD
Résumé : The trophic endosymbiosis interaction between a cnidarian host and its photosynthetic dinoflagellatessymbionts form the basis of coral reef ecosystems. Cnidarians host their symbionts in gastrodermis cells, in a phagocytosis-derived vacuole. Establishment and maintenance of the symbiotic interaction depend on an intimate molecular communication between the two partners. However, environmental and/or anthropogenic disturbances can lead to the breakdown of the symbiotic association, which is responsible for the worldwide decline of coral reefs. The main objectives of my research project are to improve the knowledge regarding symbiosis maintenance and disruption mechanisms, but also to define the molecular key players involved at the symbiotic interface in the sea anemone, Anemonia viridis. First, we have described the cellular mechanisms involved in the different types of symbiosis breackdown. Meanwhile, the characterization of npc1 and npc2 genes (involved in endosomal sterol transport), showed a duplication and a sub-functionalization of the npc2d gene. Both NPC1 and NPC2 proteins are expressed around symbionts. We therefore suggest that the duplicated protein NPC2-d is a biomarker of symbiosis health and that NPC1 protein is a marker of the perisymbiotic membrane. We then developed a protocol to characterize the proteome of the symbiotic interface between the two symbiotic partners. The newly-identified symbiotic key players will increase the general knowledge on the symbiotic interaction and its regulation during both stable and bleaching conditions.
L’endosymbiose trophique établie entre un hôte Cnidaire et ses symbiotes Dinoflagellés photosynthétiques est à l’origine du succès évolutif des écosystèmes coralliens. Les symbiotes sont internalisés par un mécanisme de phagocytose et maintenus dans les cellules du gastroderme de l'hôte. La symbiose est régie par un dialogue moléculaire intime entre les deux partenaires, interrompu lors de perturbations environnementales ou anthropiques, responsables du déclin mondial des récifs coralliens. Les objectifs de mon projet de recherche sont de définir les acteurs moléculaires localisés à l’interface symbiotique chez l’anémone de mer, Anemonia viridis. Premièrement, nous avons étudié les mécanismes cellulaires impliqués dans différents types de rupture de la symbiose et mis en évidence des phénomènes d’apoptose, nécrose et symbiophagie. Parallèlement, nous avons caractérisé chez l’anémone les gènes npc1 et npc2, impliqués chez les vertébrés dans le transport endosomal de stérols, et dont l’expression est modulée par l’état symbiotique. Nous avons pu montrer que le gène npc2d est issus d’une duplication et vraisemblablement d’une sub-fonctionnalisation et que les protéines NPC1 et NPC2 sont exprimées au voisinage des symbiotes. Nous proposons donc que la protéine NPC2-d soit utilisée comme marqueur de l’état de santé des Anthozoaires symbiotiques et que la protéine NPC1 soit un marqueur de la membrane périsymbiotique. Nous avons également développé un protocole afin d’identifier les protéines associées à l’interface symbiotique entre les deux partenaires. A terme, les cibles identifiées permettront une meilleure compréhension des mécanismes qui régulent la relation symbiotique.
https://tel.archives-ouvertes.fr/tel-01673491

NNT : 2015NICE4105
tel-01673491
https://tel.archives-ouvertes.fr/tel-01673491
https://tel.archives-ouvertes.fr/tel-01673491/document
https://tel.archives-ouvertes.fr/tel-01673491/file/2015NICE4105.pdf

Éditeur(s) : HAL CCSD Wiley
Résumé : In the Amazon basin and the Guiana Shield, white-sand (WS) forests are recognized as a low-resource habitat often composed by a distinct flora with many edaphic endemic plants. Small patches of nutrient-poor white-sand forests can pose a series of challenges to plants and animals. For plants, these challenges have been shown to function as strong filters that in turn drive taxonomic, functional and phylogenetic plant composition. However, very little is known about animal communities in WS forest and the effect that low-resource availability may have on higher trophic levels. Here, we investigate the diversity of both taxonomic and phylogenetic diversity of three Lepidoptera families' (Nymphalidae, Saturniidae, and Sphingidae) assemblages between low-resource (White-Sand Forest) and two adjacent high-resource habitats, terra firme clay and seasonally flooded forests. We found no clear effect of habitat type on taxonomic composition although butterfly and moth species abundance differed among the three contrasted habitats. The WS forest Lepidoptera community is significantly more phylogenetically overdispersed than expected by chance. We suggest that these low-resource habitats filter the number of plant lineages which, in turn, creates a bottom-up control structuring Lepidoptera phylogenetic structure. We recommend long-term sampling on Lepidoptera community both at larval and adult stages that may complement this study and test hypotheses linking herbivore phylogenetic structure to plant resource availability and trophic cascade theory.
ISSN: 0006-3606

hal-01532550
https://hal.archives-ouvertes.fr/hal-01532550
DOI : 10.1111/btp.12294
PRODINRA : 353400

Éditeur(s) : Springer
Résumé : Because of their characteristic living environments, marine organisms produce a variety of lipids. Fatty acids constitute the essential part of triglycerides and wax esters, which are the major components of fats and oils. Nevertheless, phospholipids and glycolipids have considerable importance and will be taken into account, especially the latter compounds that excite increasing interest regarding their promising biological activities. Thus, in addition to the major polyunsaturated fatty acids (PUFA) such as eicosapentaenoic (EPA) and docosahexaenoic (DHA) acids, a great number of various fatty acids occur in marine organisms, e.g. saturated, mono- and diunsaturated, branched, halogenated, hydroxylated, methoxylated, non-methylene-interrupted. Various unprecedented chemical structures of fatty acids, and lipid-containing fatty acids, have recently been discovered, especially from the most primitive animals such as sponges and gorgonians. This review of marine lipidology deals with recent advances in the field of fatty acids since the end of the 1990s. Different approaches will be followed, mainly developing biomarkers of trophic chains in marine ecosystems and of chemotaxonomic interest, reporting new structures, especially those with biological activities or biosynthetic interest. An important part of this review will be devoted to the major PUFA, their relevance to health and nutrition, their biosynthesis, their sources (usual and promising) and market.
Marine Biotechnology I (0724-6145) (Springer), 2005 , Vol. 96 , P. 49-125

Droits : 2005 Springer-Verlag
http://archimer.ifremer.fr/doc/2005/publication-937.pdf
DOI:10.1007/b135782
http://archimer.ifremer.fr/doc/00000/937/

Éditeur(s) : Soc Francaise D Ichtyologie
Résumé : The ichtyofauna of Geyser and Zelee coral banks (north of Mozambique canal) was investigated in 1996, this work being the first quantitative study on this area. Quantitative data were collected on 11 stations (mean depth 18 m) by visual observations along 50 m transect, widened to 2 m for small sedentary species, and to 5 m for commercial species with a large action range. The main descriptors of the fish communities (species richness, abundance per species) and the trophic structure (omnivorous, herbivorous, carnivorous, browsers of sessile invertebrates) were described and analysed.A total of 294 fish species, belonging to 43 families were recorded. The species richness varied from 45 to 83 species / station, and the abundance, from 292 to 1322 individuals / 100 m(2), the lower values being recorded on the inner slope and the higher ones on the outer slope. In terms of number of individuals, diurnal planktivores were highly represented at all sites (mean 63.7%). Pomacentridae and Caesionidae were the most abundant families, damselfishes being mainly represented by Chromis ternatensis (mean 73 ind., max, 148 ind. 100 m(2)), C. dimidiata (mean 33 ind., max. 151 ind. / 100 m(2)) and Dascyllus carneus (mean 38 ind., max. 92 ind. 100 m(2)), and fusiliers by Pterocaesio chrysozona (mean 19 ind., max. 128 ind. / 100 m(2)), P. tile (mean 12 ind., max. 38 ind. / 100 m(2)) and Caesio teres (mean 6 ind., max. 32 ind. / 100 m(2)). The high values recorded showed that small and isolated coral banks can support relatively rich fish faunas and substantial populations of individuals. This result may be explained by different factors such as the oceanographic circulation favourable to a localised enrichment of nutrients from surface water, the low human impact, a good coral cover and a high degree of self-recruitment associated with regional recruitment. Nevertheless, the main commercial species such as Lutjanus bohar and Variola louti, observed at each station, were represented at a low density (mean 0.8 ind., max. 6 ind. / 100 m(2) and mean 0.2 ind., max. 0.8 ind. / 100 m(2) respectively). This result may be due to the exploitation of these coral banks between 1990 and 1992, which was interrupted following the fast decreasing output.Such an experience shows us the fragility of these small coral banks and the necessity to establish a rational management of the resource.
Cybium (0399-0974) (Soc Francaise D Ichtyologie), 2002 , Vol. 26 , N. 1 , P. 11-26

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00000/10132/7687.pdf
http://archimer.ifremer.fr/doc/00000/10132/

Éditeur(s) : HAL CCSD Institute of Oceanography and Fisheries, Split
Résumé : International audience
This study deals with temporal variations in eel Anguilla anguilla diet, sampled seasonally in the Languedocian Mauguio lagoon (Gulf of Lion), from Autumn 1998 to Summer 1999. Eel mainly feeds on benthic organisms, primarily small Amphipoda, Crustacea (mainly Gammarus gr. locusta), Polychaeta, insect larvae (Chironomidae) and small fish. Based on variations in the eels feeding regime, seasonal influence is illustrated by decreased feeding activity in summer, which progressively increases during the following seasons. The trophic quality available to eels in the Mauguio lagoon depends more on allochtonous inputs from the catchment area than on its own hydrodynamics on which water of marine origin has little influence due to its long distance from the sea. Variations observed during the four seasons illustrate the opportunist type feeding behaviour of eels. They consume the most available benthic preys at a given moment without using a particular feeding strategy like specialisation or generalisation. Eel adapts its diet according to the available resources offered by the ecosystem. Because of this eel, as an amphihaline migrant species, can be characterised as an obvious indirect bioindicator of the trophic capacity and very marked level of confinement in the brackish lagoon ecosystem of Mauguio.
ISSN: 0001-5113

hal-00750416
https://hal.univ-antilles.fr/hal-00750416
https://hal.univ-antilles.fr/hal-00750416/document
https://hal.univ-antilles.fr/hal-00750416/file/Acta_Adriatica_2009_50_2_.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
Filamentous sulfur bacteria of the genus Beggiatoa form large mats covering the sediment in the shallow waters of a Guadeloupean mangrove (French West Indies). The abundance of these bacteria varies over the year and their trophic role may, therefore, also vary. We investigated this variation by conducting a survey examining the stable isotopic compositions of four grazers and four food sources during nine sampling sessions in three different periods of the year. We analyzed bulk isotopic compositions for each component except for the bacterial and diatom communities, for which we carried out a compound-specific 13C analysis of phospholipid-derived fatty acids (PLFAs). Correlations between isotopic compositions revealed a predominance of diatoms in the diet of nematodes and the important role of detritus and bacteria in the diet of the polychaete Ceratocephale sp. None of the grazers had an isotopic composition correlated with that of Beggiatoa suggesting that sulfur bacteria were not a predominant part of the diet of any grazer. Beggiatoa has a large central vacuole, resulting in a very low carbon content-to-volume ratio, potentially accounting for its low level of attractiveness to grazers. Mangrove sediments are habitats rich in organic carbon, in which, the addition of a food source, such as Beggiatoa, would have a limited effect on the structure of the food web over the course of the year.
Food Webs

hal-01545906
https://hal.archives-ouvertes.fr/hal-01545906
DOI : 10.1016/j.fooweb.2016.04.001

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Losses of corals worldwide emphasize the need to understand what drives reef decline. Stressors such as overfishing and nutrient pollution may reduce resilience of coral reefs by increasing coral–algal competition and reducing coral recruitment, growth and survivorship. Such effects may themselves develop via several mechanisms, including disruption of coral microbiomes. Here we report the results of a 3-year field experiment simulating overfishing and nutrient pollution. These stressors increase turf and macroalgal cover, destabilizing microbiomes, elevating putative pathogen loads, increasing disease more than twofold and increasing mortality up to eightfold. Above-average temperatures exacerbate these effects, further disrupting microbiomes of unhealthy corals and concentrating 80% of mortality in the warmest seasons. Surprisingly, nutrients also increase bacterial opportunism and mortality in corals bitten by parrotfish, turning normal trophic interactions deadly for corals. Thus, overfishing and nutrient pollution impact reefs down to microbial scales, killing corals by sensitizing them to predation, above-average temperatures and bacterial opportunism.
ISSN: 2041-1723

Droits : http://creativecommons.org/licenses/by/
hal-01340547
https://hal-univ-perp.archives-ouvertes.fr/hal-01340547
https://hal-univ-perp.archives-ouvertes.fr/hal-01340547/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01340547/file/ncomms11833.pdf
DOI : 10.1038/ncomms11833

Éditeur(s) : EDP Sciences
Résumé : Twelve diel surveys were carried out in three reservoirs of Sri Lanka viz. Minneriya, Udawalawe and Victoria, to investigate diel feeding patterns, daily ration and relative food consumption in fish populations. Stomach content weights of different size classes of various fish species in the three reservoirs in 12 diel surveys were analysed using an iterative method, MAXIMS. Predominantly herbivorous or detritivorous fish species such as Amblypharyngodon melettinus and Oreochromis niloticus exhibited one peak in the diel feeding pattern. Two peak feeding periods were evident in predominantly insectivores and/or zooplanktivores (e. g., Puntius chola and Rasbora daniconius) and interestingly in macrophyte feeders (i.e., Etroplus suratensis, Puntius filamentosus and Tilapia rendalli). It might be possible that all species with two feeding peaks in diel feeding patterns rely on vision for feeding. Food consumption per biomass (Q/B ratio) defined as amount of food consumed per unit weight of an age-structured population of fish was estimated on the basis of the average quantities of food consumed over a long period of time by various size classes in order to minimize the bias of estimates.
Douze séries d'échantillonnage ont été effectuées dans trois lacs-réservoirs du Sri Lanka : Minneriya, Udawalawe et Victoria, afin d'étudier le modèle journalier d'alimentation, les rations journalières et à la consommation relative des populations de poissons. Les poids des contenus stomacaux de différentes classes de taille ont ainsi été analysés en utilisant une méthode itérative, MAXIMS. Les espèces herbivores ou détritivores telles que Amblypharyngodon melettinus et Oreochromis niloticus montrent un pic dans l'activité de nutrition. Tandis que les espèces détrivores et/ou zooplanctivores en présentent deux (ex., Puntius chola et Rasbora daniconius) de même que des espèces se nourrissant de macrophytes (ex., Etroplus suratensis, Puntius filamentosus et Tilapia rendalli). Il est possible que la vision joue un rôle chez ces espèces présentant deux pics journaliers d'alimentation. La consommation de nourriture par rapport à la biomasse (le rapport Q/B) est défini comme la quantité d'aliment consommé par unité de poids d'une population de poissons structurée en âge, sur la base de quantités moyennes de nourriture consommée sur une longue période de temps et par diverses classes de taille, afin de minimiser les biais dans les estimations.
Aquatic Living Resources (0990-7440) (EDP Sciences), 2006-07 , Vol. 19 , N. 3 , P. 229-237

Droits : 2006 EDP
http://archimer.ifremer.fr/doc/2006/publication-2134.pdf
DOI:10.1051/alr:2006023
http://archimer.ifremer.fr/doc/00000/2134/

Éditeur(s) : Communication, ICES Conference and Meeting (CM), 2010, Nantes
Résumé : Chlordecone is a very persistent insecticide used in banana plantations of the French West Indies between 1972 and 1993. Chlordecone residues were found in inland water, in agricultural and freshwater products, and in marine organisms. This pollution has become of great concern in 2007. Therefore, a governmental action Plan was launched to better assess the pollution and to improve the consumer’s protection. Within this plan, 1048 samples from 69 different species of marine fishes and crustaceans were collected all around both the Guadeloupe and the Martinique Islands and analyzed. The results confirm the presence of chlordecone in marine organisms, with highly variable concentrations (from the detection limit to 1000 μg.kg-1). In 17.9 % of the samples, concentrations exceeded 20 μg.kg-1, the maximum acceptable level in fish according to the French regulation (Anon, 2008). Two main features of this contamination were characterized. 1) Because of the sedimentation of contaminated suspended soil particles, the sheltered bays are more exposed to chlordecone than the open coast where terrigenous flux are dispersed. 2) Species biology, particularly their lifestyle and diet, appear to influence contamination levels. Thus, the more contaminated species live in relation with sediment or are at high trophic level. These results have directly supported political decisions in order to prevent too high exposure of consumers to chlordecone. Fishing activities in sheltered bays have been forbidden for potentially highly contaminated species like benthic crustaceans and top predators. Further studies are under way to assess the importance of the trophic transport of chlordecone within the foodweb, and to evaluate the historical deposition of this insecticide in sediment and its further bioavailability.

Droits : 2010 ICES/CIEM ; Ifremer
http://archimer.ifremer.fr/doc/00014/12511/9361.pdf
http://archimer.ifremer.fr/doc/00014/12511/

Éditeur(s) : The National Academy of Sciences of the USA
Résumé : The patterns of variations in fisheries time series are known to result from a complex combination of species and fisheries dynamics all coupled with environmental forcing (including climate, trophic interactions, etc.). Disentangling the relative effects of these factors has been a major goal of fisheries science for both conceptual and management reasons. By examining the variability of 169 tuna and billfish time series of catch and catch per unit effort (CPUE) throughout the Atlantic as well as their linkage to the North Atlantic Oscillation (NAO), we find that the importance of these factors differed according to the spatial scale. At the scale of the entire Atlantic the patterns of variations are primarily spatially structured, whereas at a more regional scale the patterns of variations were primarily related to the fishing gear. Furthermore, the NAO appeared to also structure the patterns of variations of tuna time series, especially over the North Atlantic. We conclude that the patterns of variations in fisheries time series of tuna and billfish only poorly reflect the underlying dynamics of these fish populations; they appear to be shaped by several successive embedded processes, each interacting with each other. Our results emphasize the necessity for scientific data when investigating the population dynamics of large pelagic fishes, because CPUE fluctuations are not directly attributable to change in species' abundance.
Proceedings of the National Academy of Sciences of the United States of America (0027-8424) (The National Academy of Sciences of the USA), 2008-04 , Vol. 105 , N. 14 , P. 5420-5425

Droits : 2008 by The National Academy of Sciences of the USA
http://archimer.ifremer.fr/doc/2008/publication-3984.pdf
DOI:10.1073/pnas.0709034105
http://archimer.ifremer.fr/doc/00000/3984/