Éditeur(s) : HAL CCSD
Résumé : Coral reefs are amongst the richest and more emblematic ecosystems of the world. These hotspots of biodiversity provide many services to Human societies, bringing leisure and economic added values. In many areas, especially developing countries, these ecosystems are submitted to both climate change (rise of sea temperature and level, acidification) and human coastal pressures (urbanisation, resources exploitation). In this context, an increasing number of Marine Protected Areas is settled on coral reefs environments in order to ensure their conservation and to mitigate local pressures. Hence, one of MPAs Managers' missions is to bring ecological and social data together to build integrated indicators of effectiveness. In Reunion Island, a MPA called the Marine reserve of La Réunion was settled in 2007 along a densely urbanised and populated fringing reef coast. In order to better evaluate its MPA effectiveness, the manager requires the integration of social stakes to the management plan. A uses monitoring protocol was developed in this purpose using an ultra light aircraft and a camera. Data on 15 different recreational and non-recreational uses were acquired between 2010 and 2013, flying 48 times a year, and entered into a Geographic Information System. A huge resulting database allowed the building of an initial knowledge of the spatio-temporal distribution of uses within the Reserve. It also enabled the analysis of the uses' evolution regarding various factors of variations (amenities, facilities, shark attacks, tourism, etc.). Finally, we assessed the contribution to management efficiency using social indicators (governance, pressure indicators), and to interdisciplinary research in bringing ecologic and uses data together. This thesis brings a brand new information about coastal human activity and spatio-temporal dynamics of direct pressures on reef. This tool, designed to be reproducible and cost-optimized, enables the production of a set of indicators. Its integration to the management plan exclusively depends on the strategic choices of the manager.
Les récifs coralliens figurent parmi les biomes côtiers les plus emblématiques de la planète. Ces points chauds de la biodiversité mondiale sont convoités par les sociétés humaines pour leurs qualités paysagères et leur plus-value économique. Exposés au même titre que de nombreux écosystèmes côtiers aux changements climatiques (élévation de la température, acidification des océans), ils sont de toutes parts soumis à une anthropisation littorale mal maitrisée (urbanisation, surexploitation des ressources). Dans ce contexte, de plus en plus d' Aires Marines Protégées (AMP) s'établissent sur des écosystèmes anthropisés, les amenant à intégrer l'Homme au coeur de la gestion. À La Réunion où l'urbanisation littorale est dense et où le paysage des usages littoraux ne cesse de s’étoffer, une Réserve Naturelle Marine (RNMR) a été établie en 2007 sur un récif frangeant. L’évaluation de l’efficacité de cette AMP par son gestionnaire doit se faire par le biais d'un ensemble d'indicateurs écologiques et socio-économiques. C’est en vue d’apporter des connaissances sur la fréquentation et les usages pratiqués au sein de la RNMR que cette thèse a été initiée. Elaboré sur la base d'un suivi en ULM, un protocole a été reproduit chaque année entre 2010 et 2013 et a permis la constitution d'une base de données spatialisée, dont l'exploitation a produit trois types de résultats: i) une connaissance initiale de la répartition spatio-temporelle des usages au sein de la RNMR; ii) une compréhension de l'évolution des dynamiques spatio-temporelles à la lumière des facteurs de variations identifiés (aménagements, aménités, crise requin, tourisme, etc.), et iii) une contribution à la gestion par le développement d'indicateurs sociaux (gouvernance, pressions), et à la recherche interdisciplinaire par une confrontation des données de fréquentation et des données écologiques du milieu. La réflexion menée dans le cadre de cette thèse apporte un éclairage nouveau sur les usages et la fréquentation des littoraux coralliens à La Réunion, et leur traduction en termes de pression anthropique directe. Pensé pour être reproductible et optimisé en termes de coût, cet outil permet la production d’un ensemble d’indicateurs dont l’intégration au plan de gestion dépend exclusivement des choix stratégiques du gestionnaire.
https://tel.archives-ouvertes.fr/tel-01308703

Droits : http://creativecommons.org/licenses/by-nc-sa/
tel-01308703
https://tel.archives-ouvertes.fr/tel-01308703
https://tel.archives-ouvertes.fr/tel-01308703/document
https://tel.archives-ouvertes.fr/tel-01308703/file/Th%C3%A8se_Lemahieu.pdf

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : Publication Inra prise en compte dans l'analyse bibliométrique des publications scientifiques mondiales sur les Fruits, les Légumes et la Pomme de terre. Période 2000-2012. http://prodinra.inra.fr/record/256699
Background and Aims Plastic tree-shelters are increasingly used to protect tree seedlings against browsing animals and herbicide drifts. The biomass allocation in young seedlings of deciduous trees is highly disturbed by common plastic tree-shelters, resulting in poor root systems and reduced diameter growth of the trunk. The shelters have been improved by creating chimney-effect ventilation with holes drilled at the bottom, resulting in stimulated trunk diameter growth, but the root deficit has remained unchanged. An experiment was set up to elucidate the mechanisms behind the poor root growth of sheltered Prunus avium trees. Methods Tree seedlings were grown either in natural windy conditions or in tree-shelters. Mechanical wind stimuli were suppressed in ten unsheltered trees by staking. Mechanical stimuli (bending) of the stem were applied in ten sheltered trees using an original mechanical device. Key Results Sheltered trees suffered from poor root growth, but sheltered bent trees largely recovered, showing that mechano-sensing is an important mechanism governing C allocation and the shoot-root balance. The use of a few artificial mechanical stimuli increased the biomass allocation towards the roots, as did natural wind sway. It was demonstrated that there was an acclimation of plants to the imposed strain. Conclusions This study suggests that if mechanical stimuli are used to control plant growth, they should be applied at low frequency in order to be most effective. The impact on the functional equilibrium hypothesis that is used in many tree growth models is discussed. The consequence of the lack of mechanical stimuli should be incorporated in tree growth models when applied to environments protected from the wind (e.g. greenhouses, dense forests).
ISSN: 0305-7364

hal-01032056
https://hal.archives-ouvertes.fr/hal-01032056
DOI : 10.1093/aob/mcn054

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : This paper presents an inversion method using the interseismic velocity field to determine effective rigidity of the lithosphere. The method is based on the minimization of a cost function defined as the quadratic measure of the difference between measured and modelled velocity fields on a discrete set of points. The continuous mapping of the rigidity is fulfilled with a limited set of parameters and the forward solution is achieved using a plane stress finite element code. The computation of the cost function gradient in the parameters' space allows one to iteratively find the best parameters set through a suitable optimization algorithm.;We first design a benchmark including an abrupt rigidity variation that cannot be described by a continuous function. For such a case, we show that increasing the number of parameters is a way to accurately describe sharp variations of the rigidity map. Then, we use a dense GPS velocity field over the southwestern United States to estimate the corresponding rigidity variations for different spatial resolutions of the parameters' grid. We analyse the conceptual and practical difficulties associated with our methodology. Finally, rigidity maps obtained by our inversion method in southwestern United States and particularly across the San Andreas Fault System are reviewed and compared to current plate rigidity estimates and geophysical data over this area.
ISSN: 0956-540X

hal-00669897
https://hal.archives-ouvertes.fr/hal-00669897
DOI : 10.1111/j.1365-246X.2011.05192.x

Éditeur(s) : Springer
Résumé : The Var turbidite system is a small sandy system located in the Ligurian Basin. It was deposited during the Pliocene-Quaternary in a flat-floored basin formed during the Messinian salinity crisis. The system was fed through time by the Var and Paillon canyons that connect directly to the Var and Paillon rivers. It is still active during the present sea-level highstand. Two main mechanisms are responsible for gravity-flow triggering in the Var turbidite system: (1) mass-wasting events affect mainly the upper part of the continental slope, in areas where volumes of fresh sediment delivered by rivers are highest, and result from the under-consolidation state of slope sediments and earthquakes, and (2) high-magnitude river floods resulting from melting of snow and convective rainfall during fall and spring seasons, and generating hyperpycnal turbidity currents at river mouths when the density of freshwater transporting suspended particles exceeds that of ambient seawater. Failure- and flood-induced gravity flows are involved through time in the construction of the Var Sedimentary Ridge, the prominent right-hand levee of the Var system, and sediment waves. Processes of construction of both the Var Ridge and sediment waves are closely connected. Sandy deposits are thick and abundant in the eastern (downchannel) part of the ridge. Their distribution is highly constrained by the strong difference of depositional processes across the sediment waves, potentially resulting through time in the individualization of large and interconnected sand bodies.
Geo-Marine Letters (0276-0460) (Springer), 2006-12 , Vol. 26 , N. 6 , P. 361-371

Droits : 2006 Springer
http://archimer.ifremer.fr/doc/2006/publication-2258.pdf
DOI:10.1007/s00367-006-0047-x
http://archimer.ifremer.fr/doc/00000/2258/

Éditeur(s) : Université de Bretagne Occidentale
Résumé : The major objectives of this thesis were to study the structure, functioning and dynamics of different faunal assemblages associated with cold seep ecosystems in the eastern Mediterranean Sea. We focused our study on three main sites: the Marmara Sea, the Mediterranean ridge and the Nile deep sea fan. This thesis aims at determining the environmental signature of Mediterranean sites and the characteristics of the associated fauna at European and global scales. The specific objectives were to (1) determine the composition, diversity, density, biomass of invertebrate assemblages, (2) characterize biogeochemical conditions within different microhabitats in the vicinity of organisms, (3) to define the trophic relationships amongst seep fauna using stable isotope analyses (collaboration) and lastly, (4) to compare the spatial distribution and assemblage characteristics at different spatial scales (local, structure-scale, regional). The results show that (1) the Napoli mud volcano is the richest structure in terms of numbers of taxa while the Nile deep-sea fan sites need additional sampling, (2) a high variability is observed both between the different microhabitats but also within a single microhabitat, (3) the methane and oxygen gradients as well as substratum type are the main structuring factors explaining the distribution of the fauna and (4) the characteristics of the microhabitats, rather than the study area, influence the structure of benthic communities associated with Mediterranean cold seeps.
Les objectifs principaux de cette thèse sont d’étudier la structure, le fonctionnement et la dynamique de différents assemblages de faune associée aux émissions de fluides froids de Méditerranée orientale. Trois principaux sites ont été étudiés : la mer de Marmara, la ride méditerranéenne et le delta profond du Nil. Cette thèse tente de déterminer la « signature environnementale » des sites méditerranéens et les caractéristiques de la faune qui y est associée dans un contexte de marges européennes et mondiale. Les objectifs spécifiques sont (1) de déterminer la composition, la diversité, la densité et la biomasse des assemblages d'invertébrés ; (2) de caractériser les conditions biogéochimiques au sein des différents microhabitats à proximité des organismes; (3) de caractériser les relations trophiques sur les différents assemblages de faune par une approche isotopique (en collaboration) et finalement, (4) de comparer la distribution spatiale et les caractéristiques des assemblages à différentes échelles spatiales (locale, à l’échelle d’une structure géologique, régionale). Les résultats montrent que : (1) le volcan de boue Napoli est le site le plus riche en taxons alors que les sites du delta du Nil nécessiteraient un échantillonnage plus approfondi ; (2) il existe une grande variabilité entre les microhabitats ainsi qu’au sein d’un même microhabitat ; (3) les gradients en méthane, en oxygène ainsi que la nature du substrat sont les principaux facteurs abiotiques expliquant la distribution de la faune, (4) les caractéristiques des microhabitats, plutôt que la zone d’étude, influencent la structure des communautés benthiques associées aux écosystèmes de fluides froids méditerranéens.

Droits : 2010 The Author, UBO
http://archimer.ifremer.fr/doc/00020/13138/10178.pdf
http://archimer.ifremer.fr/doc/00020/13138/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
This paper examines the thermal properties of cement composites reinforced with vegetable bagasse fibres (1.5% and 3% wrtc). Thermal properties have been correlated to macroscopic density and porosity in order to estimate thermal conductivity of fibres using a calculation inspired from the Maxwell-Eucken modelling. Experimental investigations reveal that adding retified bagasse fibres reduces composites thermal conductivity and yields a weaker specific heat in comparison with composites made with alkaline bagasse fibres. Moreover, the more the fibres, the lighter the specimen; lower its thermal conductivity and lower its specific heat. Thermal conductivity of alkaline fibres is lower than retified fibres one.
ISSN: 1359-835X

hal-00809831
https://hal.univ-antilles.fr/hal-00809831
DOI : 10.1016/j.compositesa.2010.01.002

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : Isozyme markers were used to characterize levels of diversity, genotypic structure and spatial genetic structure for the low-density tree species, Carapa procera (five adults per ha), within 300 ha of a continuous tropical rain forest stand. Both seed and adult stages were investigated, a high level of genetic diversity being found in both. Fixation indices showed excess homozygosity in seeds, and excess heterozygosity in adults, which might be caused by selection in favour of heterozygotes. Autocorrelation analysis of the spatial distribution of genotypes revealed no significant pattern in adults or in seeds before dispersal, and there was a high variability in correlogram shapes among alleles. This suggests that gene flow is extensive in C. procera, probably mainly through long-distance pollen dispersal, as seed dispersal is expected to be rather limited in this species (maximum distances of about 50 m). No clear-cut spatial pattern was observed in pollen allele frequencies, which supports the hypothesis of extensive pollen flow. This overall lack of structure is consistent with the data already available on the mating system of this predominantly outcroissing species.
ISSN: 0018-067X

hal-01032057
https://hal.archives-ouvertes.fr/hal-01032057
DOI : 10.1038/hdy.1997.124

Éditeur(s) : HAL CCSD Elsevier
Résumé : The motion of oceanic plates is commonly related to the subduction of cold and dense oceanic material into the mantle. These models predict plate velocities from subduction velocities but the trench motion is not directly included in the computation. Here, using a recent compilation of a global data set, we found that the motion of trenches (either advancing or retreating with respect to upper plates) scales with their corresponding subducting plates motion. Based on simple experimental tests, we found that subduction of strong slabs inside the upper mantle correctly predicts these kinematic relationships. We deduce that the motion of the trenches represent the surface manifestation of the resistance encountered by the subducting lithosphere to bend and penetrate within the upper mantle.
ISSN: 0012-821X

hal-00407200
https://hal.archives-ouvertes.fr/hal-00407200
DOI : 10.1016/j.epsl.2007.02.016

Résumé : Selective breeding of shrimp for viral resistance is established for species like L. vannamei and L. stylirostris. However, selection for bacterial infection resistance is not documented. In New Caledonia, "Syndrome 93" is a vibriosis that affects cultured shrimps during the cool season with survival from 15 to 30%. Current practises for breeders rearing at low densities do not improve the resistance of the offsprings mainly because selection pressures for "Syndrome 93" are low. Even after the fifth generation, survival improvement is not significant.
La sélection génétique de lignées de crevettes résistantes à certains virus a démontré son efficacité en particulier chez L. vannamei et L. stylirostris. En revanche, la sélection de crevettes résistantes à une bactérie du genre Vibrio est peu documentée. En Nouvelle-Calédonie, le « Syndrome 93 », vibriose à V. penaeicida, affecte toutes les fermes de crevettes L. stylirostris lors des élevages de saison fraîche. Les survies en bassins de grossissement, de l’ordre de 40 à 60% dans un élevage sain, tombent à des valeurs de 15 à 30%. L’élevage de géniteurs à faible densité, s’il maximise les performances de reproduction, ne semble pas optimiser la qualité de la descendance du fait des faibles pressions de sélection qui s’exercent vis-à-vis du syndrome 93. Les améliorations significatives du nombre d’animaux survivant aux infections et aux épisodes de mortalité en bassin restent faibles en valeur absolue à la 5ème génération de sélection expérimentale en conditions d’élevage, mais sur le long terme la stratégie testée pourrait se révéler économiquement efficace.

Droits : 2005 Ifremer
http://archimer.ifremer.fr/doc/00117/22848/20658.pdf
http://archimer.ifremer.fr/doc/00117/22848/

Éditeur(s) : Société Française de Malacologie
Résumé : The introduction of the limpet Crepidula fornicata on French coasts occurred through a number of stages of unequal amplitude. The two main stages are the result of a) its transportation on the hulls of the Allies ships during WWII, and b) the voluntary introduction of the Japanese oyster Crassostrea gigas in the 1970s. A recent assessment of its distribution shows that it can be found from the North Sea to the Mediterranean shores, resulting in some conflicts, due to its high density.
L'introduction de la crépidule Crepidula fornicata sur les côtes de France s'est effectuée en plusieurs phases d'inégale amplitude. Les deux plus importantes sont dues au transport par les coques de bateaux alliés, à la fin de la deuxième guerre mondiale et à l'introduction volontaire, durant les années 1970, de l'huître japonaise Crassostrea gigas. Un bilan actuel de sa répartition montre qu'elle est présente de la Mer du Nord aux rives de Méditerranée, engendrant parfois des situations de conflit, du fait de sa forte densité.
Haliotis (Société Française de Malacologie), 1995 , Vol. 24 , P. 75-86

Droits : 1995 Société Française de Malacologie
http://archimer.ifremer.fr/doc/1995/publication-6191.PDF
http://archimer.ifremer.fr/doc/00000/6191/

Éditeur(s) : HAL CCSD
Résumé : International audience
Despite their dynamic nature, certain chromatin marks must be maintained over the long term. This is particulary true for histone 3 lysine 9 (H3K9) trimethylation, that is involved in the maintenance of healthy differentiated cellular states by preventing inappropriate gene expression, and has been recently identified as the most efficient barrier to cellular reprogramming in nuclear transfer experiments. We propose that the capacity of the enzymes SUV39H1/2 to rebind to a minor fraction of their products, either directly or via HP1α/β, contributes to the solidity of this mark through (i) a positive feedback involved in its establishment by the mutual enforcement of H3K9me3 and SUV39H1/2 and then (ii) a negative feedback sufficient to strongly stabilize H3K9me3 heterochromatin in post-mitotic cells by generating local enzyme concentrations capable of counteracting transient bursts of demethylation. This model does not require direct molecular interactions with adjacent nucleosomes and is favoured by a series of additional mechanisms including (i) the protection of chromatin-bound SUV39H1/2 from the turnovers of soluble proteins, which can explain the uncoupling between the cellular contents in SUV39H1 mRNA and protein; (ii) the cooperative dependence on the local density of the H3K9me3 of HP1α/β-dependent heterochomatin condensation and, dispensably (iii) restricted enzyme exchanges with chromocenters confining the reactive bursts of SUV39H1/2 in heterochromatin. This mechanism illustrates how seemingly static epigenetic states can be firmly maintained by dynamic and reversible modifications. © 2016 Elsevier B.V.
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms

hal-01467548
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01467548
DOI : 10.1016/j.bbagrm.2016.11.006
PUBMED : 27876670

Éditeur(s) : HAL CCSD
Résumé : In this paper we report a study of the mating system and gene flow of Sextonia rubra, a hermaphroditic, insect pollinated tropical tree species with a geographic distribution in the Guyana Plateau and the Amazon. Using five microsatellites we analysed 428 seeds of 27 open pollinated families at the experimental site "Paracou" in French Guiana. We observed, compared to other tropical tree species, a high level of genetic diversity. We estimated parameters of the mating system and gene flow by using the mixed mating model and the TwoGenerapproach. The estimated multilocus outcrossing rate, tm, was 0.992 indicating nearly complete outcrossing. A significant level of biparental inbreeding and a small proportion of full-sibs were estimated for the 27 seed arrays. The differentiation of allelic frequencies among the pollen pools was ΦFT = 0.061. We estimated mean pollen dispersal distances between 65 m and 89 m according to the dispersal models used. The joint estimation of pollen dispersal and density of reproductive trees gave an effective density estimate of 2.1-2.2 trees/ha
Silvae genetica

hal-01031483
https://hal.archives-ouvertes.fr/hal-01031483

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
P>The Strait of Hormuz area is a transition zone between the continental collision of the Zagros (west) and the subduction of an oceanic part of the Arabian Plate beneath the Makran wedge (east). Geology and recent GPS measurements indicate that about 15 mm yr-1 of relative motion in N10 degrees E direction is accommodated by two major fault systems: (1) the NNW-trending Minab-Zendan-Palami (MZP) fault system that connects the Main Zagros Thrust (MZT) to the inner Makran thrust system and the Frontal subduction thrust and (2) the N-trending Sabzevaran-Kahnuj-Jiroft (SKJ) fault system that bounds the Jazmurian depression to the west. We use dense GPS measurements along four transects across these fault systems in order to determine the strains spatial distribution. The northern GPS transect confirms the total fault slip rates for both fault systems estimated by the tectonic analyses (about 10 and 7.3 mm yr-1 in N10 degrees direction across the MZP and SKJ fault systems, respectively). For both fault systems, the elastic deformation spreads over shear zones that are several tens of kilometres wide. However, transects located close to latitude 27 degrees N reveal a much narrower shear zone (similar to 10 km) for the MZP fault system. Moreover, we confirm that most of the present-day strain is transferred towards the frontal subduction thrust rather than towards the inner Makran thrusts. In order to complement this new GPS velocity field with spatially dense measurements, we processed a set of ERS radar images by the radar interferometry (InSAR) technique. We used both a 'stacking' and a 'persistant-scatterers' approach to differentiate the ground deformation signal which spatial gradient is expected to be very low, from the atmospheric signal. Results from these interferograms appear to be relatively in agreement with the GPS-determined strain distribution. Nevertheless, they confirm the absence of any superficial creep behaviour since no sharp discontinuity on interferometric phase can be noted on any interferogram. Finally, we use a purely kinematic 'block model' inversion process to calculate slip rates and locking depths for each fault system from our GPS measurements. These models suggest that the relative quiescence over the last 200 yr has certainly produced a slip deficit as high as 2 m. So, we may wonder if the MZP fault system is not late in the interseismic phase of its earthquake cycle.
ISSN: 0956-540X

hal-00429386
https://hal.archives-ouvertes.fr/hal-00429386
DOI : 10.1111/j.1365-246X.2009.04321.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Regional-scale deformation taking place in a strongly anisotropic, yet homogeneous metapelitic protolith during an apparently single tectonic event was systematically investigated as a function of the distance to the main tectonic contact (i.e., the Filabres shear zone, a major detachment in the Betic Cordilleras, Spain). The density of C3' shear bands (or extensional crenulation cleavage) reworking the earlier S2 schistosity increases exponentially towards the contact, in parallel with the decrease in the size of the shear domains. Systematic variations in angles and shape ratios are also reported. Deformation and age patterns, however, suggest that this spectacular trend at least partly results from a progressive localization of the deformation through time. This fossilized shear strain gradient was thus produced somewhat diachronously. Such shear strain patterns nevertheless provide a mean to constrain the rheological properties for such weak lithologies and a mean to better understand crustal deformation.
ISSN: 0191-8141

insu-00545043
https://hal-insu.archives-ouvertes.fr/insu-00545043
https://hal-insu.archives-ouvertes.fr/insu-00545043/document
https://hal-insu.archives-ouvertes.fr/insu-00545043/file/JSGagardetal2.pdf
DOI : 10.1016/j.jsg.2010.11.011

Éditeur(s) : HAL CCSD Taylor & Francis
Résumé : International audience
We provide an inequality relating the radial directional derivative and the subdifferential of proper lower semicontinuous functions, which extends the known formula for convex functions. We show that this property is equivalent to other subdifferential properties of Banach spaces, such as controlled dense subdifferentiability, optimality criterion, mean value inequality and separation principles. As an application, we obtain a first-order sufficient condition for optimality, which extends the known condition for differentiable functions in finite-dimensional spaces and which amounts to the maximal monotonicity of the subdifferential for convex lower semicontinuous functions. Finally, we establish a formula describing the subdifferential of the sum of a convex lower semicontinuous function with a convex inf-compact function in terms of the sum of their approximate epsilon-subdifferentials. Such a formula directly leads to the known formula relating the directional derivative of a convex lower semicontinuous function to its approximate epsilon-subdifferential.
ISSN: 0233-1934

hal-00694601
https://hal.archives-ouvertes.fr/hal-00694601
DOI : 10.1080/02331934.2011.645034

Éditeur(s) : Ecole Nationale Supérieure Agronomique de Rennes (ENSAR)
Résumé : Artificial Fish Aggregating Devices (FADs) are known to concentrate tropical tunas. This aggregative behaviour drastically increases the vulnerability of these species to fishing. Alternatively, FADs can be used as oceanic observatories to study the aggregative behaviour of large pelagic fish. We conducted sea surveys in Martinique (Lesser Antilles) to i) establish a typology of the pelagic fish aggregations found around moored FADs ii) study their relations with their biotic and abiotic environment and the local fishery. The mean biomass of large pelagic fish aggregations was also estimated to provide scientific inputs to achieve a sustainable management of the moored FAD fishery. The first part presents the background of the study. We introduce the regional pelagic ecosystem, the aggregative behaviour of pelagic fish around FADs and the Martinican moored FAD fishery. The second part begins with a presentation of the conceptual framework of the study: the hierarchy theory. Observation scales and survey methodology are therefore described. Repeated echosounder surveys run in a star pattern were conducted around 2 moored FADs, in combination with underwater video observations, classical fishing experiments and CTD profiles. In the third part, the elements of the [moored FAD ¿ pelagic fish - environment - fishing] system and their interactions are numerically characterised in the vertical plane. The main type of pelagic fish aggregation was a large aggregation distributed in sub-surface (40-100 m) within a radius of 400 m of the FAD. This aggregation was mostly made of 60 cm FL blackfin tunas (Thunnus atlanticus). It appeared at sunrise and mostly spread away in the late afternoon. It was observed during all daytime surveys. The average density and the vertical structure of the micronektonic sound scattering layers (SSLs) were assessed locally around a FAD for 48h cycles. These SSLs descriptors showed positive correlation with the size and the abundance of the sub-surface tuna aggregation. Whereas this aggregation accounted for about 95% of the total biomass aggregated around a moored FAD, it was nearly unexploited by the local commercial fishermen. The fourth part focuses on the sub-surface tuna aggregation. A high variability of the spatial distribution of the aggregation was evidenced in the horizontal plane at daily, day to day and monthly temporal scales. These variations were related to fluctuations of the global abundance of the aggregation. The daytime average density of sub-surface tuna was modelled as a function of the distance to FAD, within an advection-diffusion framework. Based on these results, a universal kriging model was designed to assess the mean maximum daily biomass of the sub-surface tuna aggregation. This mean biomass estimate yielded 11 tons with an estimation error of 26%. To conclude, we present a hierarchical organization in space and time of a sub-surface tuna population distributed within a network of moored FADs, from micro to meso-scale. We suggest that the spatial distribution of tunas can be explained from fine to coarse-scales by behavioural processes (self-organization, feeding, aggregative behaviour) whereas their spatial distribution is mainly forced by environmental processes at broader scales.
L'utilisation de Dispositifs de Concentration de Poissons permet de provoquer la formation de larges agrégations de thonidés autour de dispositifs artificiels, ce qui augmente considérablement la vulnérabilité de ces ressources vis-à-vis de l'exploitation halieutique. Les DCP peuvent également être utilisés en tant qu'observatoires océaniques, afin d'étudier le comportement agrégatif du macronecton pélagique. Nous avons ainsi réalisé des observations autour de DCP ancrés en Martinique, afin de définir une typologie des agrégations de macronecton et de étudier leurs relations avec leur environnement biotique, abiotique et l'exploitation halieutique locale. Nous avons ensuite estimé la biomasse moyenne de macronecton agrégé autour d'un DCP ancré, afin de fournir des éléments scientifiques nécessaires à une gestion durable de ces ressources. La première partie présente le contexte de l'étude i.e. l'écosystème pélagique régional, le phénomène d'agrégation du macronecton autour des DCP et la pêche associée aux DCP ancrés en Martinique. La deuxième partie introduit la théorie de la hiérarchie qui a fourni le cadre conceptuel de l'étude et présente les échelles et méthodes d'observation. Le principal outil d'observation est un échosondeur scientifique, mis en oeuvre le long de parcours en étoile autour du DCP. Les prospections acoustiques ont été combinées à des observations vidéo sous marines, des pêches expérimentales et un suivi in-situ de l'environnement abiotique. La troisième partie présente une typologie des éléments constituant le système [DCP ancré - macronecton - environnement - pêche] dans le plan vertical et précise leurs interactions. Le type d'agrégation de macronecton dominant est une grande agrégation composée d'une majorité de thons noirs (Thunnus atlanticus) de taille moyenne (60 cm) distribuée en sub-surface (40-100 m), dans un rayon de 300 m autour de la tête des DCP. Cette agrégation se forme au lever du soleil et se disperse presque totalement dans l'après midi. Elle a été observée de jour lors de toutes les campagnes. Une corrélation positive entre la densité et la structure moyenne des couches micronectoniques diurnes évaluée localement autour du DCP au cours de 48 h et les dimensions et l'énergie acoustique de l'agrégation de thons de subs-surface a été mise en évidence. Malgré le fait que cette agrégation représente en moyenne 95 % de l'énergie acoustique du macronecton autour des DCP, elle est presque inexploitée par les pêcheurs artisans locaux. La quatrième partie met en évidence les fortes variations conjointes de la distribution spatiale dans le plan horizontal de la densité de l'agrégation de thons de sub-surface et de son abondance globale. Ces variations ont été observées au cours du cycle nycthéméral et aux échelles inter-journalières et mensuelles. La distribution spatiale moyenne de la densité diurne de l'agrégation en fonction de la distance au centre de gravité de l'agrégation est cependant très stable et peut être modélisée au moyen d'une équation d'advection-diffusion. Un modèle de krigeage universel, utilisant les résultats du modèle d'advection-diffusion, a permis d'évaluer la biomasse maximale journalière moyenne de l'agrégation de thons de sub-surface à une dizaine de tonnes, avec un coefficient de variation d'estimation de 26%. Nous proposons une représentation hiérarchique synthétique de la distribution spatiale d'une sous-population de thons dans un réseau de DCP ancrés de la micro à la méso-échelle. Nous suggérons que la distribution spatiale des thons est déterminée principalement à l'échelle fine (100m-1km) et à l'échelle grossière (1-10 km) par des processus comportementaux (auto-organisation, agrégation, nutrition) et par des processus environnementaux à échelle plus large.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2006/these-1735.pdf
http://archimer.ifremer.fr/doc/2006/sup-1735.pdf
http://archimer.ifremer.fr/doc/00000/1735/

Éditeur(s) : HAL CCSD Elsevier
Résumé : The Borborema Province, in the NE of Brazil, is a rather complex piece in the Brazil-Africa puzzle as it represents the junction of the Dahomeyide/Pharusian, Central African, Aracuai and Brasilia fold belts located between the West-African/Sao Luis, Congo/Sao Francisco and Amazonas craton. The correlation between the Dahomeyides from W-Africa (Ghana, Benin, Togo, and Mali) and the Borborema Province involves the Medio Coreau and Central Ceara domains. The inferred continuation of the main oceanic suture zone exposed in the Dahomeyides of W Africa is buried beneath the Phanerozoic Parnaiba Basin in Brazil (northwest of the Medio Coreau domain) where some high density gravity anomalies may represent hidden remnants of an oceanic suture. In addition to this major suture a narrow, nearly continuous strip composed of mainly mafic pods containing relics of eclogite-facies assemblages associated with partially migmatized granulite-facies metapelitic gneisses has been found further east in the NW Borborema Province. These high pressure mafic rocks, interpreted as retrograded eclogites, are located between the Transbrasiliano Lineament and the Santa Quiteria continental arc and comprise primitive to evolved arc-related rocks with either arc- or MORB-type imprints that can indicate either deep subduction of oceanic lithosphere or roots of continental and oceanic magmatic arcs. Average peak P-T conditions under eclogite-facies metamorphism (T=770 degrees C and P = 17.3 kbar) were estimated using garnet-clinopyroxene thermometry and Jd content in clinopyroxene. Transition to granulite-facies conditions, as well as later widespread re-equilibration under amphibolite facies, were registered both in the basic and the metapelitic rocks and suggest a clockwise P-T path characterized by an increase in temperature followed by strong decompression. A phenomenon possibly related to the exhumation of a highly thickened crust associated with the suturing of the Medio Coreau and Central Ceara domains, two distinct crustal blocks separated by the Transbrasiliano Lineament.
ISSN: 1342-937X

hal-00413584
https://hal.archives-ouvertes.fr/hal-00413584
DOI : 10.1016/j.gr.2009.01.003

Éditeur(s) : HAL CCSD Springer Verlag/EDP Sciences
Résumé : International audience
We present a plant trait database covering autecology for rain forest trees of French Guiana. The database comprises more than thirty traits including autecology (e.g., habitat associations and reproductive phenology), wood structure (e.g., density and tension characteristics) and physiology at the whole plant (e.g., carbon and nitrogen isotopes) and leaf level (e.g., specific leaf area, photosynthetic capacity). The current database describes traits for about nine hundred species from three hundred genera in one hundred families. For more than sixty species, data on twelve morphological and ecophysiological traits are provided for individual plants under different environmental conditions and at different ontogenetic stages. The database is thus unique in permitting intraspecific analyses, such as the effects of ontogenetic stages or environmental conditions on trait values and their relationships.
ISSN: 1286-4560

Droits : info:eu-repo/semantics/OpenAccess
hal-00884130
https://hal.archives-ouvertes.fr/hal-00884130
https://hal.archives-ouvertes.fr/hal-00884130/document
https://hal.archives-ouvertes.fr/hal-00884130/file/hal-00884130.pdf

Éditeur(s) : HAL CCSD Wiley
Résumé : 1. Considerable debate surrounds the extent to which tropical forests can be managed for resource extraction while conserving biodiversity and ecosystem properties, which depend on functional composition. Here we evaluate the compatibility of these aims by examining the effects of logging on taxonomic and functional diversity and composition in a tropical forest. 2. Twenty years after selective logging, we inventoried 4140 stems regenerating in logging gaps and adjacent undisturbed areas, and we integrated a database of 13 functional traits describing leaf and wood economics of tropical trees. 3. We found no differences in taxonomic and functional richness among habitats, but logging gaps had significantly higher taxonomic and functional evenness. 4. Logging also effected striking, long-term changes in both species and functional composition. In particular, the xylem density of recruits in logging gaps was 6% less than in unlogged forests, leaves were 11% less tough and had 613% greater mineral nutrient concentrations. 5. Synthesis and applications. Our results suggest that managers of tropical forests should limit overall surface area converted to logging gaps by creating fewer, larger gaps during selective logging, to reduce impacts on the taxonomic and functional composition of the regenerating stand.
ISSN: 0021-8901

hal-01032420
https://hal.archives-ouvertes.fr/hal-01032420
DOI : 10.1111/j.1365-2664.2012.02164.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Recent research has demonstrated the importance of dermal exposure for some semivolatile organic compounds (SVOCs) present in the gas phase of indoor air. Though models for estimating dermal intake from gaseous SVOCs exist, their predictions can be subject to variations in input parameters, which can lead to large variation in exposure estimations. In this sensitivity analysis for a steady state model, we aimed to assess these variations and their determinants using probabilistic Monte Carlo sampling for 8 SVOCs from different chemical families: phthalates, bisphenols, polycyclic aromatic hydrocarbons (PAHs), organophosphorus (OPs), organochlorines (OCs), synthetic musks, polychlorinated biphenyls (PCBs) and polybromodiphenylethers (PBDEs). Indoor SVOC concentrations were found to be the most influential parameters. Both Henry's law constant (H) and octanol/water partition coefficient (Kow) uncertainty also had significant influence. While exposure media properties such as volume fraction of organic matter in the particle phase (fom-part), particle density (ρpart), concentration ([TSP]) and transport coefficient (ɣd) had a slight influence for some compounds, human parameters such as body weight (W), body surface area (A) and daily exposure (t) make a marginal or null contribution to the variance of dermal intake for a given age group. Inclusion of a parameter sensitivity analysis appears essential to reporting uncertainties in dermal exposure assessment.
ISSN: 0160-4120

hal-01635769
https://hal.archives-ouvertes.fr/hal-01635769
https://hal.archives-ouvertes.fr/hal-01635769/document
https://hal.archives-ouvertes.fr/hal-01635769/file/Pelletier%202017%20Dermal%20expo%20rev2.pdf
DOI : 10.1016/j.envint.2017.02.005