Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Both oedometric and plane-strain tests were performed with parallelepipedic samples made of synthetic granular, cohesive, frictional and dilatant rock analogue material GRAM2. For the first time parallel sets of fractures that have all the characteristics of natural joints were reproduced in the laboratory. The fractures are regularly spaced, normal to σ3, and have plumose morphology very similar to that of natural joints. These fractures can form at tensile stress σ3 much smaller in magnitude than the tensile strength of material and even at slightly compressive σ3. When mean stress σ exceeds a certain value, the fractures become oblique to σ1 (the obliquity increases with σ), forming networks of conjugate shear bands/fractures. These results of plane-strain experiments are in good agreement with those of better controlled conventional axisymmetric tests on a similar material in Chemenda et al. (2011b) and are closer to real geological situations. Both types of experiments are complementary. Their results lead to the conclusion that at least certain categories of natural fractures (including joints, and conjugate shear fractures/bands) were initiated as deformation localization bands. The band orientation is defined by the constitutive properties/parameters (notably the dilatancy factor) that are sensitive to σ.
ISSN: 0040-1951

hal-00795555
https://hal.archives-ouvertes.fr/hal-00795555
DOI : 10.1016/j.tecto.2011.11.021

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Recent sedimentary facies and processes along the offshore slope of east Taiwan are investigated using a large set of geophysical and sedimentological data. The Taiwan orogen is often considered as one of the most tectonically active regions in the world and also suffers important climatic activity with an average of four typhoons per year. We have mapped in details the morphosedimentary features and characterized the sedimentary facies along offshore eastern Taiwan. There, we show that the slope is driven by a variety of erosional processes from mass wasting to turbidity current. Mass movements such as slides or mass transport deposits (MTDs) are ubiquitous and affect the whole east coast off Taiwan. Detailed core investigations, such as grain size analysis, chemical and mineralogical composition, revealed that turbidite facies range from thin fine-grained turbidites to thick massive turbidite facies. The detailed analysis of turbidite beds allow us to discuss the controlling factors of turbidity current generation. Turbidity currents represent an important sedimentary process that governs the slope morphology off east Taiwan. Triggering mechanisms likely range from slope instabilities related to earthquakes shaking to failure relative to climatic-controlled pulses of sediment supply. We propose that at least two end-members are characteristics in our turbidite records in term of controlling factor:1) Turbidity currents likely generated by tectonic activity and earthquakes shaking in particular; and2) Turbidity currents likely generated by climatic activity such as typhoon-induced floods.
ISSN: 0025-3227

hal-01277768
https://hal.archives-ouvertes.fr/hal-01277768
DOI : 10.1016/j.margeo.2015.05.013

Éditeur(s) : Gauthier-Villars
Résumé : Calcareous nannofossil assemblages of the family Noelaerhabdaceae have been studied in sediments of seventeen Quaternary cores raised from various climatic areas of the Atlantic and Pacific oceans. These sections display a regular, hiatus-free sedimentation for the last 500000 years. They have been dated using oxygen-isotopic measurements, variations of calcium carbonate content, variations of total nannofossil abundance, thorium measurements and volcanic ash horizons. Coccoliths of the genus Gephyrocapsa have been placed in three distinct taxonomic groups, based on morphological criteria inferred from light-microscope observations. Their acmes, as well as the acme of Emiliania huxleyi, are considered as stratigraphic markers. These markers characterize most of the last thirteen glacial-interglacial climatic stages, as well as some climatic events of lower magnitude (8.5 and 6.5). Most of these markers have global stratigraphic significance: acme of ''closed'' Gephyrocapsa during stages 13,11 and 9, and during event 8.5; acme of ''small'' Gephyrocapsa during stage 7 and event 6.5; acme of ''open'' Gephyrocapsa at top of event 6.5, and during stages 5 and 3; acme of E. huxleyi during stages 3 and 1. Others are only valid south of the southernmost latitude reached by the North-Atlantic polar front during the Quaternary: acme of ''closed'' Gephyrocapsa during stage 12; acme of ''small'' Gepkyrocapsa in early and middle stage 5; acme of E. huxleyi during stage 2. Others are only valid south of 20-degrees-S: acme of ''small'' Gephyrocapsa at the 10/9 stage boundary; acme of ''open'' Gephyrocapsa during stage 6.
Oceanologica Acta (0399-1784) (Gauthier-Villars), 1993 , Vol. 16 , N. 4 , P. 349-362

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00099/21061/18687.pdf
http://archimer.ifremer.fr/doc/00099/21061/

Éditeur(s) : HAL CCSD Société des amis du Musée national de préhistoire et de la recherche archéologique — SAMRA
Résumé : International audience
Lithic technology studies have been late developed in the Antilles. The first important works about the knapping technology of the first agro-ceramist cultures (saladoid) have shown the use of the bipolar technique. A new research program based on the analysis of cedrosan and huecan saladoid lithic collections from Martinique and Guadeloupe, gave us the possibility to confirm and refine those first data. The technological analysis, associated to an experimentation program defined to help us to characterize the striking techniques used, have shown a systematic use of the bipolar technique for the débitage of good quality raw materials. The chaînes opératoires of reduction are highly efficient producing a set of small flakes. The morphology of those flakes, linked to the use of the bipolar technique, is perfectly adapted to their use as manioc grater teeth.
L'étude des restes de débitage a connu un développement tardif dans les Antilles. Les premiers travaux importants sur les débitages des premières cultures formatives (saladoïde) ont mis en évidence l'utilisation de la percussion posée sur enclume. Le développement d'un programme de recherche sur les séries lithiques saladoïdes cedrosanes et huecanes de Martinique et de Guadeloupe nous a permis de confirmer et d'affiner ces premières observations. L'analyse technologique, complétée par un programme expérimental destiné à éclaircir la question des techniques de percussion, a montré l'existence d'une utilisation systématique de la percussion posée sur enclume pour l'exploitation de matières premières de bonne qualité. Les chaînes opératoires de débitage sont d'une grande efficacité et permettent très rapidement d'obtenir des séries de petits éclats faiblement standardisés. Les caractéristiques morphologiques de ces éclats, étroitement liées à la technique de percussion employée, en font des supports parfaitement adaptés à une utilisation comme dents de râpes à manioc.
ISSN: 1145-3370

hal-00974212
https://hal.univ-antilles.fr/hal-00974212

Éditeur(s) : HAL CCSD Coastal Education and Research Foundation
Résumé : Nearshore bars are generally present on sandy coasts and play a significant role in wave breaking and sediment exchange between beach and shoreface. The study area is located on the Languedoc-Roussillon coast in the Gulf of Lions (southern part of the French Mediterranean coast). This microtidal environment is classified as a wave-dominated coast. The sand coast displays different bar systems (single or multiple; straight or crescentic). The alongshore variability of bar morphology in the nearshore zone was investigated in August 2009 during one week, using a topo-bathymetric LIDAR data set (300 km(2)). LIDAR makes it possible to cover a large area in a very short time with a high resolution. The topo-bathymetric LIDAR offers the added benefit of morphological information about the beach-sea transition in very shallow water (below I in), data often difficult if not impossible to obtain with traditional techniques. The purpose of this paper is 1) to depict the distribution of bars and their characteristics along the 180 km coast of the Gulf of Lions; 2) to update the classifications of sand bars typologies in Languedoc-Roussillon; 3) to pay particular attention to the description of the intricate inner system. Globally, cross-shore distribution of subtidal morphologies is characterized by both an outer and an inner system. The outer system is crescent-shaped in the south and straight in the northern part with a distinctive regional delimitation. The inner system comprises an inner bar and, near the coast, a complex fluctuating bar called Low Bar Beach (LBB). Several intermediate states were identified and added to the new classification proposed in this paper. These results clearly emphasize the importance of LIDAR technology for a better understanding of bar behaviour and single and/or multi-bar beach organisation.
ISSN: 0749-0208

hal-00783187
https://hal.archives-ouvertes.fr/hal-00783187

Éditeur(s) : HAL CCSD Springer-Verlag
Résumé : The Chile-Argentina Patagonian Cordillera is a natural laboratory to study the interactions between oceanic and continental lithosphere during the subduction of an active spreading ridge beneath a continent. Subduction of the South Chile spreading ridge, which separates the Nazca plate from the Antarctic plate, started around 15–14 Ma at the southern tip of Patagonia. Presently, the southernmost segment of the Chile Ridge enters the Peru-Chile trench at 46°S, at the site of the Chile Triple Junction (CTJ). We review the main events which occurred on land in the CTJ region (46–47°S), related with processes of ridge subduction. We summarize tectonic, sedimentary, and magmatic features in a 30 Ma-to Present chronological table. A preridge subduction stage, from 30 to 15 Ma, is characterized by the onset and growth of Patagonian relief and by a shift from marine to continental detrital sedimentation in the foreland at 20–22 Ma. The change from pre-ridge subduction to ridge subduction is marked on land by a transition from calc-alkaline to alkaline volcanism, at 14–12 Ma, and by the onset of eruption of very large fl ood basalt provinces (future volcanic plateaus) following rapid erosion of the eastern foreland belt. Post-plateau basaltic volcanism (<4 Ma) is coeval with a period of tectonic and morphological rejuvenation during which the eastern foreland of the Cordillera has been affected by extensional/transtensional tectonics. We place these events in the framework of a tectonomagmatic model involving the opening of slab windows due to both slab tear and ridge axis subduction.
Subduction Zone Geodynamics

hal-00421053
https://hal.archives-ouvertes.fr/hal-00421053
DOI : 10.1007/978-3-540-87974-9_12

Éditeur(s) : HAL CCSD Wiley
Résumé : The routes through which Norway spruce recolonized the Alps after the last ice age were investigated at the genetic level. Seven populations along the Alpine range plus one Apennine population were characterized for seven sequence-characterized amplified region (SCAR) loci, detecting an overall FST = 0.118. This rather high value for forest species reflects an uneven distribution of genetic variability, and was analysed through different statistical methods. Alternative hypotheses were tested under the isolation-by-distance model and using the analysis of molecular variance (amova) frame. We conclude that the hypothesis of the existence of a glacial refugium in the Apennines should be rejected, while a putative relict population is identified in the Maritime Alps. The Alpine range of Norway spruce appears to be split in two parts across a north-south line. The results are discussed in comparison with data based on morphological markers, isozymes, chloroplast microsatellites and mitochondrial markers.
ISSN: 0962-1083

hal-01031243
https://hal.archives-ouvertes.fr/hal-01031243
DOI : 10.1046/j.1365-294x.2000.00911.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
We developed a new granular material (MatIV) to study experimentally landscape evolution in active mountain belt piedmonts. Its composition and related physical properties have been determined using empirical criteria derived from the scaling of deformation, erosion-transport and sedimentation natural processes. MatIV is a water-saturated composite material made up with 4 granular components (silica powder, glass microbeads, plastic powder and graphite) whose physical, mechanical and erosion-related properties were measured with different laboratory tests. Mechanical measurements were made on a modified Hubbert-type direct shear apparatus. Erosion-related properties were determined using an experimental set-up that allows quantifying the erosion/sedimentation budget from tilted relaxation topographies. For MatIV, we also investigated the evolution of mean erosion rates and stream power erosion law exponents in 1D as a function of slope.;Our results indicate that MatIV satisfies most of the defined criteria. It deforms brittlely according to the linear Mohr-Coulomb failure criterion and localizes deformation along discrete faults. Its erosion pattern is characterized by realistic hillslope and channelized processes (slope diffusion, mass wasting, channel incision). During transport, eroded particles are sorted depending on their density and shape, which results in stratified alluvial deposits displaying lateral fades variations. To evaluate the degree of similitude between model and nature, we used a new experimental device that combines accretionary wedge deformation mechanisms and surface runoff erosion processes. Results indicate that MatIV succeeded in producing detailed morphological and sedi-mentological features (drainage basin, channel network, terrace, syntectonic alluvial fan). Geometric, kinematic and dynamic similarity criteria have been investigated to compare precisely model to nature. Although scaling is incomplete, it yields particularly informative orders of magnitude. With all these characteristics, MatIV appears as a very promising material to investigate experimentally a wide range of scientific questions dealing with relief dynamics and interactions between tectonics, erosion and sedimentation processes.
ISSN: 0040-1951

hal-00669904
https://hal.archives-ouvertes.fr/hal-00669904
DOI : 10.1016/j.tecto.2011.09.029

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The Zandjan province is situated in the NW of Iran, at the junction between the southern termination of the Tabriz right-lateral strike-slip fault and the western end of the Alborz active mountain range. Despite this key location, in terms of active tectonics, there is no destructive earthquake reported in available historical seismicity catalogues. Even if a few low magnitude instrumental earthquakes have been recorded indicating that this area is actively deforming, the Zandjan region can be considered as a seismic gap. Based on detailed field investigations, digital elevation models (DEMs), satellite image and aerial photo interpretations, we have identified a major active fault network affecting this regions. It is mainly constituted by several west and est verging thrust faults, trending NW-SE to N-S, that clearly cut Late Quaternary to Holocene deposits. Evidences in the morphology indicate also that they accommodate some right-lateral slip component. This fault network can be divided into four major fault zones affecting Zandjan city (present day population over 500,000) and part of the Zandjan-Mianeh basin more to the west. Based on fault geometrical characteristics (fault length, segmentation ... ) and kinematics, the Zandjan fault system is certainly capable to produce moderate to large earthquakes (Mw = 6.5-7.0) and serious damages in the Zandjan city and surrounding areas. The study of these faults is, then, of major interest for seismic hazard assessment in Zandjan province where total population exceed 1.5 million but also to better understand present day geodynamic of NW Iran.
ISSN: 0040-1951

hal-00617526
https://hal.archives-ouvertes.fr/hal-00617526
DOI : 10.1016/j.tecto.2011.04.012

Éditeur(s) : HAL CCSD
Résumé : International audience
As part of an inventory of Carabidae from Tunisia many field surveys were conducted specifically targeting endogean and hypogean environments. This work led to the discovery of two new endemic Trechus species belonging to the species-complex of Trechus fulvus Dejean, 1831. Characters of these species are related to the group of Trechus lallemantii Fairmaire, 1859 that we redefine on the basis of a set of morphological characters.
BULLETIN MENSUEL DE LA SOCIETE LINNEENNE DE LYON

hal-01544482
https://hal.archives-ouvertes.fr/hal-01544482

Éditeur(s) : The Japanese Society of Systematic Zoology
Résumé : Prior to this study, two species of ophiuroid had been described from hydrothermal vent sites, and another from methane cold seeps, all from the Atlantic Ocean. Although ophiuroids have occasionally been reported from vents in the Pacific Ocean as well, none has been described before. This study presents two new species, Spinophiura jolliveti gen. et sp. nov., family Ophiuridae, and Ophiolamina eprae gen. et sp. nov., family Ophiacanthidae, which are most likely endemic to reducing environments in the East Pacific. We also include detailed descriptions of the post-metamorphic development of these species. Spinophiura jolliveti is characterized by up to five rather long, semi-erect arm spines and a relatively small oral shield. Its postlarva is unusual in lacking a buccal scale and in that the tooth forms later in development than in all other species the postlarvae of which have been examined. The most characteristic features of O. eprae are the attitude of the three proximal laminar mouth papillae, standing almost vertically on the oral plate, and the presence of two oval, scale-like, distal papillae. Additional migrant (non-vent-endemic) species found at Pacific vent sites are tabularized, but not identified below genus level due to the poor taxonomic state of the Pacific ophiuroid fauna. Biogeographic and ecological issues are discussed.
Species Diversity (1342-1670) (The Japanese Society of Systematic Zoology), 2006-02 , Vol. 11 , N. 1 , P. 7-32

Droits : 2006 The Japanese Society of Systematic Zoology
http://archimer.ifremer.fr/doc/2006/publication-6475.pdf
http://archimer.ifremer.fr/doc/00000/6475/

Éditeur(s) : HAL CCSD
Résumé : The spreading ridge subduction is an unavoidable process during the subduction-related belt elovution. The aim of this thesis concerns the evolution of the Central Patagonian Cordillera, at the latitude of the Chile triple junction, in relation with the Chile spreading ridge subduction inducing the opening of a slab-window beneath the South American plate. By a morphologic, and a structural analysis, coupled with the analysis of satelittes and topographic images, we show the influence of the slab-window development at 3 Ma on the morphostructural evolution of the Central Patagonia. During the Pliocene, the Central Patagonian Cordillera experiences a major extensional phase inducing the formation of transverse and internal depressions. Negative tectonic inversion, responsible to the rift-type topography, induces the inversion of the morphotectonic front and the disruption of the volcano-sedimentary piedmont with the rest of the Cordillera at 3 Ma. Radial extensional regime is characterized by a magnitude comprises between 800 m and 3500 meters and vertical movements are localized along polyphazed faults. We suggest that the Plio-Quaternary morphostructural evolution is related to the opening of the slab-window at 3 Ma beneath the Central Patagonia. The upwelling of asthenospheric hot mantle through the slab window induces the regional collapse of the Central Patagonian Cordillera.
La subduction d'une dorsale active sous un continent est un processus inévitable dans l'évolution des chaînes de subduction. Le travail de cette thèse concerne l'évolution de la Cordillère de Patagonie Centrale, à la latitude du point triple du Chili, en relation avec la subduction de la dorsale active du Chili induisant le développement d'une fenêtre asthénosphérique sous la plaque sudaméricaine. A l'aide d'une approche morphologique, structurale, couplée à l'analyse d'images satellites et topographiques, nous montrons l'influence de la fenêtre asthénosphérique depuis 3 Ma sur l'évolution morphostructurale de la Patagonie Centrale. Au cours du Pliocène, la Cordillère de Patagonie Centrale est marquée par une phase d'extension majeure induisant la formation de dépressions transverses et internes à la chaîne. L'inversion négative du relief responsable de la topographie générale de type rift induit l'inversion du front morphotectonique et la déconnexion du piedmont volcano-sédimentaire du reste de la Cordillère à partir de 3 Ma. L'extension radiale dont l'amplitude est comprise entre 800 mètres et 3500 mètres, se localise dans la plupart des cas au niveau de failles polyphasées. L'évolution morphostructurale plioquaternaire proposée est directement reliée à l'ouverture de la fenêtre asthénosphérique à 3 Ma sous la Patagonie et à la remontée de matériel asthénosphérique chaud induisant la collapse régionale de la Cordillère de Patagonie Centrale.
https://tel.archives-ouvertes.fr/tel-00557618

tel-00557618
https://tel.archives-ouvertes.fr/tel-00557618
https://tel.archives-ouvertes.fr/tel-00557618/document
https://tel.archives-ouvertes.fr/tel-00557618/file/scalabrinothese.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
Some morphological and biochemical taxonomic markers are also affecting factors of dynamic mechanical properties of wood. Thus, could these properties reflect the classification/phylogeny of taxa? This work is a first insight into this question. It relied on the gathering (through experimental campaigns and exhaustive literature review) of a large database on the viscoelastic (i.e. including damping) vibrational properties of 445 woody species. relationship between damping was confirmed at a wide interspecific scale, but described no more than 40% of not in a way that could be easily related to the phylogenetic tree. Damping was a bit more -Papilionoideae and, to a lesser extent, Lauraceae, Cupressaceae and Moraceae) damping than average, independently While for some other families no clear characteristics could be observed at least with the present number of represented species. In the future, increasing the amount of data and compiling anatomical and chemical markers / affecting factors will allow further analysis at sub-family levels, and a better understanding of this wide topic.
6th Plant Biomechanics Conference PBM09
Cayenne, French Guiana

hal-00808398
https://hal.archives-ouvertes.fr/hal-00808398
https://hal.archives-ouvertes.fr/hal-00808398/document
https://hal.archives-ouvertes.fr/hal-00808398/file/Mechanical_damping_wood_Bremaud_al.pdf

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : International audience
Forest successional processes following disturbance take decades to play out, even in tropical forests. Nonetheless, records of vegetation change in this ecosystem are scarce, increasing the importance of the chronosequence approach to study forest recovery. However, this approach requires accurate dating of secondary forests, which until now was a difficult and/or expensive task. Cecropia is a widespread and abundant pioneer tree genus of the Neotropics. Here we propose and validate a rapid and straightforward method to estimate the age of secondary forest patches based on morphological observations of Cecropia trees. We found that Cecropia-inferred ages were highly correlated with known ages of the forest. We also demonstrate that Cecropia can be used to accurately date disturbances and propose twenty-one species distributed all over the geographical range of the genus as potential secondary forest chronometer species. Our method is limited in applicability by the maximal longevity of Cecropia individuals. Although the oldest chronosequence used in this study was 20 years old, we argue that at least for the first four decades after disturbance, the method described in this study provides very accurate estimations of secondary forest ages. The age of pioneer trees provides not only information needed to calculate the recovery of carbon stocks that would help to improve forest management, but also provides information needed to characterize the initial floristic composition and the rates of species remigration into secondary forest. Our contribution shows how successional studies can be reliably and inexpensively extended without the need to obtain forest ages based on expensive or potentially inaccurate data across the Neotropics.
ISSN: 1932-6203

halsde-00757518
https://hal.archives-ouvertes.fr/halsde-00757518
DOI : 10.1371/journal.pone.0042643
PUBMED : 22916144

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Dental and postcranial remains (an atlas, carpus and metacarpus elements, and a part of the pelvic girdle) of an embrithopod mammal are described from Bir Om Ali, Tunisia, a new late Eocene locality. The enamel microstructure of a tooth fragment found in association shows 'arsinoitheriid radial enamel', an enamel condition which is characteristic of Arsinoitherium (Arsinoitheriidae, Embrithopoda). Although the postcranial elements slightly differ in size and morphology from those of Arsinoitherium zitteli (late Eocene to early Oligocene), we tentatively refer this new Eocene Tunisian material to that genus. These fossils represent the first known embrithopod from the Eocene of Tunisia.
ISSN: 0899-5362

hal-00903435
https://hal.archives-ouvertes.fr/hal-00903435
DOI : 10.1016/j.jafrearsci.2013.07.010

Éditeur(s) : HAL CCSD
Résumé : International audience
Afro-­ Caribbean sprinters often reach high performance levels at an early age. Adolescence is a time of morphological and physiological changes. This study was designed to analyze the evolution in parameters of short sprint performance during adolescence in Afro-­Caribbean boys, especially the stride number/body height ratio (SN/BH), which is at the interface of technical and morphological factors. Seventy-­‐‑ one 13-­‐‑ year-­‐‑ old boys performed vertical jumps and short sprint races. The races were filmed with a view to determine stride variables. Anthropometric parameters were also measured. The same tests were performed two years later. Body height and SN/BH were the main predictors of sprint performance. The delta of performance was principally explained by stride length and stride number. Although deterioration in technical parameters was expected, the parameters related to body size and stride length were the main sprint performance predictors rather than explosive force. These results could be useful in developing tests to detect sprint potential in youth.
Journal of Human Kinetics

hal-01143539
https://hal.univ-antilles.fr/hal-01143539

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
BACKGROUND: Evidence of human sexual transmission during Zika virus emergence is a matter of concern, particularly in procreation, but to date, kinetics of seminal shedding and the effects of infection on human reproductive function have not been described. To investigate the effects of Zika virus infection on semen and clearance of Zika virus from semen and body fluids, we aimed to study a cohort of Zika virus-infected men. METHODS: This prospective observational study recruited men presenting with acute Zika virus infection at Pointe-à-Pitre University Hospital in Guadeloupe, French Caribbean, where a Zika virus outbreak occurred between April and November, 2016. Blood, urine, and semen were collected at days 7, 11, 20, 30, 60, 90, and 120 after symptom onset, and semen characteristics, such as total sperm count, sperm motility, vitality, and morphology, and reproductive hormone concentrations, such as testosterone, inhibin, follicle-stimulating hormone, and luteinising hormone, were assessed. At days 7, 11, and 20, semen was processed to isolate motile spermatozoa. Zika virus RNA was detected by RT-PCR using whole blood, serum, urine, seminal plasma, semen cells, and motile spermatozoa fractions. Zika virus was isolated from different sperm fractions on Vero E6 cultures. FINDINGS: 15 male volunteers (mean age 35 years [SD 5; range 25-44) with acute Zika virus infection and positive Zika virus RNA detection in blood or urine were enrolled. Total sperm count was decreased from median 119 × 10(6) spermatozoa (IQR 22-234) at day 7 to 45·2 × 10(6) (16·5-89·6) at day 30 and 70 × 10(6) (28·5-81·4) at day 60, respectively, after Zika virus infection. Inhibin values increased from 93·5 pg/mL (IQR 55-162) at day 7 to 150 pg/mL (78-209) at day 120 when total sperm count recovered. In motile spermatozoa obtained after density gradient separation, Zika virus RNA was found in three of 14 patients at day 7, four of 15 at day 11, and four of 15 at day 20, and replication-competent virus was found in the tested patient. Seminal shedding kinetics seemed heterogeneous among patients. Whole blood was the fluid most frequently positive for Zika virus RNA (62 of 92 samples) and three patients remained positive at day 120. INTERPRETATION: Semen alterations early after acute Zika virus infection might affect fertility and could be explained by virus effects on the testis and epididymis. Frequency of shedding and high viral load in semen, together with the presence of replicative virus in a motile spermatozoa fraction, can lead to Zika virus transmission during sexual contact and assisted reproduction procedures. Whole blood seems to be the best specimen for Zika virus RNA detection, diagnosis, and follow-up. FUNDING: Agence de la Biomédecine/Agence Régionale de Santé de la Guadeloupe/Inserm-REACTing.
ISSN: 0140-6736

hal-01647078
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01647078
DOI : 10.1016/S1473-3099(17)30444-9
PUBMED : 28838639

Éditeur(s) : Royal Soc
Résumé : Since its description from the Galapagos Rift in the mid-1980s, Archinome rosacea has been recorded at hydrothermal vents in the Pacific, Atlantic and Indian Oceans. Only recently was a second species described from the Pacific Antarctic Ridge. We inferred the identities and evolutionary relationships of Archinome representatives sampled from across the hydrothermal vent range of the genus, which is now extended to cold methane seeps. Species delimitation using mitochondrial cytochrome c oxidase subunit I (COI) recovered up to six lineages, whereas concatenated datasets (COI, 16S, 28S and ITS1) supported only four or five of these as clades. Morphological approaches alone were inconclusive to verify the identities of species owing to the lack of discrete diagnostic characters. We recognize five Archinome species, with three that are new to science. The new species, designated based on molecular evidence alone, include: Archinome levinae n. sp., which occurs at both vents and seeps in the east Pacific, Archinome tethyana n. sp., which inhabits Atlantic vents and Archinome jasoni n. sp., also present in the Atlantic, and whose distribution extends to the Indian and southwest Pacific Oceans. Biogeographic connections between vents and seeps are highlighted, as are potential evolutionary links among populations from vent fields located in the east Pacific and Atlantic Oceans, and Atlantic and Indian Oceans; the latter presented for the first time.
Proceedings Of The Royal Society B-biological Sciences (0962-8452) (Royal Soc), 2013-11 , Vol. 280 , N. 1770 , P. 1-9

Droits : 2013 The Author(s) Published by the Royal Society. All rights reserved.
http://archimer.ifremer.fr/doc/00157/26814/24961.pdf
DOI:10.1098/rspb.2013.1876
http://archimer.ifremer.fr/doc/00157/26814/

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé :  
We present a plant trait database covering autecology for rain forest trees of French Guiana. The database comprises more than thirty traits including autecology (e.g., habitat associations and reproductive phenology), wood structure (e.g., density and tension characteristics) and physiology at the whole plant (e.g., carbon and nitrogen isotopes) and leaf level (e.g., specific leaf area, photosynthetic capacity). The current database describes traits for about nine hundred species from three hundred genera in one hundred families. For more than sixty species, data on twelve morphological and ecophysiological traits are provided for individual plants under different environmental conditions and at different ontogenetic stages. The database is thus unique in permitting intraspecific analyses, such as the effects of ontogenetic stages or environmental conditions on trait values and their relationships.
Annals of Forest Science

hal-01032196
https://hal.archives-ouvertes.fr/hal-01032196
DOI : 10.1051/forest:2007058

Éditeur(s) : Gauthier-Villars
Résumé : The mangroves of Senegal are limited to the inlet of the Casamance - a river with very low discharge - and to the Sine-Saloum. The mineralogical and geochemical analysis of sediments (derived from 30 deep bore-holes) shows the thickness of the mangrove substrate, which overlies the continental terminal formation. Kaolinite and smectite account for over 90% of the clay fraction. The former is derived from the continental terminal whereas the latter is of marine origin. The chemical composition of the mangrove sediments is remarkably stable and clays play an overwhelming role in the preservation of organic matter and pyrite. Since 1968, a drought in Senegal has caused an important increase in the salinity levels of streams and water-tables; a considerable modification of vegetation zones in the Casamance, especially manifest in the extension of bare flats locally known as "tannes" at the expense of mangroves and marked changes in the morphology and geochemistry of mangrove soils. Compared to most mangrove areas in the humid tropics, mangroves in Senegal are characterized by a very fragile equilibrium.
Oceanologica Acta, Special issue (0399-1784) (Gauthier-Villars), 1982

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00246/35744/34252.pdf
http://archimer.ifremer.fr/doc/00246/35744/